BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] (123 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 232 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++V+D ++L R +E SG+ + +G +AL+L ++ +PD++I+DI L I Sbjct: 1 MAKEKILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ + + ++IPVI +TA + D+ + G + YI+KP S + +K Sbjct: 61 DGLEVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAV 120 Query: 120 IGEA 123 + A Sbjct: 121 LRRA 124 >gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 231 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 72/121 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D E +L + ++ GY NG EAL+L R+ K D+I++D+ L EI GL Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +IPV+ +TA + D+ + G + YI+KP S+ M +K + Sbjct: 64 EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 228 Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+++VED++ +L + + +G+ +G L LA KPD++++D+ + + Sbjct: 1 MSAHKILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +QIK +S L IPVI +TA + D+ + G + YI KP S + IK Sbjct: 61 DGLEVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAV 120 Query: 120 IGEA 123 + A Sbjct: 121 LRRA 124 >gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 231 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 72/121 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D E +L + ++ GY NG EAL++ R+ K D+I++D+ L EI GL Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +IPV+ +TA + D+ + G + YI+KP S+ M +K + Sbjct: 64 EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 231 Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 72/121 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D E +L + ++ GY NG EAL++ R+ K D+I++D+ L EI GL Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +IPV+ +TA + D+ + G + YI+KP S+ M +K + Sbjct: 64 EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 232 Score = 183 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + K++IV+D E +L R +E GY NG EALE+A++ KP +I++D+ L ++ Sbjct: 1 MSQDKILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I++D+ + P+I +TA + D+ + G + YI+KP S+ + IK Sbjct: 61 DGYDVCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 231 Score = 183 bits (467), Expect = 6e-45, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 72/121 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D E +L + ++ GY NG EAL++ R+ K D+I++D+ L EI GL Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +IPV+ +TA + D+ + G + YI+KP S+ M +K + Sbjct: 64 EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 183 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 68/123 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + +E +GY + +G AL+ AR +PD+I++DI L + Sbjct: 1 MARKILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ +++ P++ +TA + D+ + G + Y++KP + ++ I Sbjct: 61 GLEVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALI 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13] Length = 231 Score = 183 bits (467), Expect = 7e-45, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 72/121 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D E +L + ++ GY NG EAL++ R+ K D+I++D+ L EI GL Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +IPV+ +TA + D+ + G + YI+KP S+ M +K + Sbjct: 64 EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +KL + +E G+ +G ALE +H PD+I++D+ L ++ Sbjct: 2 MSKKVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMD 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ KQI++++ +P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 62 GLEVCKQIRKEN--SHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAIL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 231 Score = 183 bits (466), Expect = 8e-45, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 71/121 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D E +L + ++ GY NG EAL + R+ K D+I++D+ L EI GL Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +IPV+ +TA + D+ + G + YI+KP S+ M +K + Sbjct: 64 EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 233 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 69/123 (56%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D +K+ RD +E +G+ + +G AL LARQ P ++++D+ L + Sbjct: 1 MSRTILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ +++D +P+I +TA + D + G + YI+KP S + ++ + Sbjct: 61 GLDVTRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 231 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 71/121 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D E +L + ++ GY NG EAL + R+ K D+I++D+ L EI GL Sbjct: 4 KKVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +IPV+ +TA + D+ + G + YI+KP S+ M +K + Sbjct: 64 EVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 182 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 73/121 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D E +L + +E +GY + NG+EAL +A++ KPD+I++D+ L + G Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++D+ P+I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 63 YEVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 231 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + +L + +E G+ L +G L++AR PD+II+DI L + G Sbjct: 1 MPKILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + + ++ + IP+I ++A + D+ + G + YI+KP S + +K + Sbjct: 61 LSVCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 239 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + ++L R +E GY L +G + LELAR +PD+I++D+ L ++G Sbjct: 1 MPKILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++ D+ + IPVI ++A A + D + G + YI+KP S + IK + Sbjct: 61 LEVCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB] gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain [Syntrophus aciditrophicus SB] Length = 245 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 72/121 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D + ++L +E G+ Q +G EAL+ R +KPD++I+D+ L +SGL Sbjct: 15 KRILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGL 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I +Q++ + E + +PVI +TA D+ + G + YI+KP ++ + ++ + Sbjct: 75 DICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRR 134 Query: 123 A 123 + Sbjct: 135 S 135 >gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 237 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E ++ + +E GY NGME ++ Q++PD+II+D+ + + Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 61 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + AL++ + PD++++D S Sbjct: 13 MTARILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFPGGS 72 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D + IPVI +TA + D+ + + G + YI+KP S + IK + Sbjct: 73 GIQLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVM 132 Query: 121 GEA 123 A Sbjct: 133 RRA 135 >gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 74/121 (61%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D E +L + +E +GY + NG+EAL +A++ KPD+I++D+ L + G Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++D+ + P+I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 63 YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 74/121 (61%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D E +L + +E +GY + NG+EAL +A++ KPD+I++D+ L + G Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++D+ + P+I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 63 YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 232 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 74/121 (61%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D E +L + +E +GY + NG+EAL +A++ KPD+I++D+ L + G Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++D+ + P+I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 63 YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 228 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED EL +L R +E GY +G EAL R + PD++I+DI L + Sbjct: 1 MASTILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ S P+I +TA + D G + Y+ KP S + +K + Sbjct: 61 GWTVCREIRAMS---NAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family [Nitrosococcus watsonii C-113] Length = 231 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D ++ + GY +G +A + + +PD+I++D L IS Sbjct: 3 MAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPGIS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++K + +E+PVI +TA + D+ R G + YI+KP S + IK + Sbjct: 63 GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKAVL 122 Query: 121 GEA 123 + Sbjct: 123 RRS 125 >gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 230 Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 70/120 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ ++L + + +SGY + +G +AL+ AR+ PD+I++D+ L I GLE Sbjct: 5 KILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLMLPGIDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K++ Q IPVI +TA + D + G + YI KP S + +K + + Sbjct: 65 VCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRRS 124 >gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] Length = 229 Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED ++ + ++E G+ + AL + + PD+I++D S Sbjct: 1 MTAKILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D + IP+I +TA + D+ R + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] Length = 232 Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED++ ++L R +E G+ +G AL ++ PD+II+D+ L + G Sbjct: 1 MAKILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 LELCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 235 Score = 180 bits (459), Expect = 5e-44, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 72/123 (58%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED ++L R +E GY + T NG E LE R+ PD++++D+ L +I Sbjct: 1 MTHTILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+IK D L+ IP+I +TA + + D+ + G + YI+KP S+ + IK + Sbjct: 61 GIDVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 231 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 66/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D E KL + G+ L +G +ALE+ARQH+PDVII+D+ L + G + Sbjct: 4 VLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ D L+EIPVI ++A + D+ R G + Y++KP S +K + Sbjct: 64 CELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRR 121 >gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcus oceani ATCC 19707] gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] Length = 229 Score = 179 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++V+D ++ + GY +G +A + + PD+I++D L IS Sbjct: 1 MVATILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++K + +E+PVI +TA + D+ R G + YI+KP S + + IK + Sbjct: 61 GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family [Treponema succinifaciens DSM 2489] Length = 231 Score = 179 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E +L + +E Y NG +ALEL R PD++I+D+ L ++SGL+ Sbjct: 2 KILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + I+ DS ++ IP+I VTA D + G + Y++KP S + + I+ + Sbjct: 62 ICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRR 120 >gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 240 Score = 179 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 67/119 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + R +E GY + +G EAL + + KPD++++D L +SG+EI Sbjct: 14 VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEI 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QI+ +E+P+I +TA +GD+ R G + Y++KP SL M ++ + A Sbjct: 74 CRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRA 132 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 179 bits (457), Expect = 9e-44, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D+ ++L + ++ GY NG EA++ A KPD+I++D+ + EI G Sbjct: 1 MSKILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +QI+ S +P+I +TA D+ + G + YI+KP + + IK + Sbjct: 61 LEVCRQIRMHSR---VPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 234 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 73/122 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+++ED ++L R +E +GY + + NG E L+ A + KPD++I+D+ L ++ Sbjct: 1 MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K +K++ E + IP+I +TA + + D+ + G + YI+KP S+ + IK + Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 234 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 74/122 (60%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+++ED ++L R +E +GY + + NG E L+ A + KPD++I+D+ L ++ Sbjct: 1 MAHRVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K +K++ E + IP+I +TA + + D+ + G + YI+KP S+ + IK + Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D +K+ RD +E +G+ + +G AL LARQ P +I++D+ L + Sbjct: 1 MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ +++D +P+I +TA + D + G + YI+KP S + ++ + Sbjct: 61 GLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 233 Score = 179 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IVED + L R +E GY + +G EA+ L + +PDV+I+D L +S Sbjct: 1 MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +Q++ +++P++ +TA + D R G + Y+SKP S+ + +K + Sbjct: 61 GIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 237 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E ++ + +E Y NG E +L H+PD+II+D+ + + Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 61 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 234 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 73/122 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+++ED ++L R +E +GY + + NG E L+ A + KPD++I+D+ L ++ Sbjct: 1 MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K +K++ E + IP+I +TA + + D+ + G + YI+KP S+ + IK + Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 248 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K V+IVEDN + R+ +E GY NG E L AR H+PD++++D+ + + G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE ++ + +++PVI +TA + D+ + G + Y++KP S++ + ++ + Sbjct: 82 LEFLRRFRA---TEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLR 138 Query: 122 EA 123 + Sbjct: 139 RS 140 >gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 234 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 73/122 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+++ED ++L R +E +GY + + NG E L+ A + KPD++I+D+ L ++ Sbjct: 1 MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K +K++ E + IP+I +TA + + D+ + G + YI+KP S+ + IK + Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510] gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510] Length = 248 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED + L + +E G+ +G EAL A + P ++++D L +SGLE+ Sbjct: 23 VLIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPLMSGLEV 82 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q++ +++ ++IP+I +TA +GD R G + YI+KP S + + ++ + A Sbjct: 83 CRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRRA 141 >gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 231 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED E + L + G+ G + +E AR+ PD++I+D+ L + Sbjct: 1 MNKNILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + +K+D EL++IP++ +TA + D + + G Y++KP S + + +K + Sbjct: 61 GLEVCETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 178 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + + + ++ GY ++ +G EA+ LA PD+I++DI L ++ Sbjct: 1 MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++++ P++ +TA + D+ + G + YI+KP S M +K + Sbjct: 61 GFTVCRKLRQSI---STPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 237 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E ++ + +E Y NG E +L H+PD+II+D+ + + Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 61 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 237 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E ++ + +E Y NG E +L H+PD+II+D+ + + Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 61 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI] gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 357 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ R +E G+ + +G EAL L K D++I+D+ + + G Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++ +P+I +TA + D + G + Y+ KP S + +K + + Sbjct: 188 VCREVRK---TTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRS 244 >gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] Length = 235 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++ ED+ + D +E+ GY + +G EAL+L + + D++++DI + S Sbjct: 1 MMAHILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ E +IP+I +TA + D+ + G + YI+KP + + I + Sbjct: 61 GYDVCREIRSTDE--DIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 229 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + ALE+ + PD+I++D S Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D ++IP+I +TA + D+ R + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] Length = 234 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 67/119 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L + +E G+ + +G EAL LA + P ++++D L +SGLE+ Sbjct: 9 ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q++ + + ++ PVI +TA + D+ R G + YI+KP S + + ++ + A Sbjct: 69 CRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRA 127 >gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 277 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ ++ ++ +GY+ + +G AL+ A H+PD++++D+ L + GLE Sbjct: 21 RILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLMLPGMDGLE 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E+ +PV+ +TA + D + G + Y++KP S + ++ + A Sbjct: 81 VCRRLRENGP---VPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRA 137 >gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 229 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + AL++ + PD++++D S Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D + IP+I +TA + D+ R + G + +I+KP S + IK + Sbjct: 61 GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVM 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 237 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E ++ + +E Y NG E +L H+PD+II+D+ + + Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 61 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124] gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124] Length = 235 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + GY + +G EALE KPD++I+D+ L E+ G Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126] gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126] Length = 235 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + GY + +G EALE KPD++I+D+ L E+ G Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 231 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D E +L R +E G+ +G EA++ A+ P +II+D+ L ++ G ++ Sbjct: 6 ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++++ E+P+I +TA + D+ + G + Y++KP S + +K + A Sbjct: 66 CREVRK---FSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRA 121 >gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 235 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +D ++L + +G+ + +G +A+ + +PD+II+D + +S Sbjct: 2 MNAKILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMS 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + + +E +++PVI ++A +GD G + YI+KP S + +K + Sbjct: 62 GIEVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALL 121 Query: 121 GEA 123 A Sbjct: 122 RRA 124 >gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 229 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++VED ++ + ++E SGY ++ + ALE + PD+I++D L S Sbjct: 1 MAKRVLLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+ ++IP+I VTA + D+ R G + Y++KP S + IK I Sbjct: 61 GVQLAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 232 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 73/121 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D E +L + +E + Y + NG+EAL +A++ KPD+I++D+ L + G Sbjct: 3 MEKILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++D+ + P+I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 63 YEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus thermophilus ND03] Length = 235 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + GY + +G EALE KPD++I+D+ L E+ G Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 228 Score = 177 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 69/120 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E ++ + GY + +G +A++LA PD+II+D+ L ++ G E Sbjct: 4 RILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMDGWE 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E+ EL+ +PVI +TA + D + G + Y+ KP S+ M ++ ++ + Sbjct: 64 VCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRRS 123 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L R + GY +G E LE Q KPD++++D+ + + GLE Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ L PV+ +TA D+ + G + Y+ KP + IK + Sbjct: 65 VCRRIRK---LGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120 >gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + + + ++ GY ++ +G EA+ LA PD+I++DI L ++ Sbjct: 1 MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++++ P++ +TA + D+ + G + YI+KP S M +K + Sbjct: 61 GFTVCRKLRQSI---STPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D + +K + +E GY L +G EAL + + PD+I++D+ L ++ G Sbjct: 1 MPRVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I++ ++P++ +TA D+ + G + Y++KP + +K + Sbjct: 61 FEVCRNIRK---TSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IV+D+E +L + Y +G EAL+L ++ PD++++D+ L + Sbjct: 1 MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ +I++ P+I ++A D+ K G + YI KP + + + Sbjct: 61 DGYQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGAL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150] gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150] Length = 236 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + GY + +G EALE PD++I+D+ L E+ G Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 231 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 68/121 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + ++L R +E G+ ++ +G ALE+ + D++++DI L + G Sbjct: 1 MARILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++++ ++IPVI ++A + D + G + YI+KP S+ + +K + Sbjct: 61 LTVCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus LMG 18311] Length = 235 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + GY + +G EALE KPD++I+D+ L E+ G Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEVAKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] Length = 249 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED + R +E G+ + +G EAL + +PD++++D L +SG+E Sbjct: 23 TVLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWMLPGLSGIE 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI+ +++P+I VTA D R G + YI+KP ++ I+ + A Sbjct: 83 VCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRA 142 >gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 235 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D ++L + +E + + +G E L LA+Q PD+II+D+ L ++ G Sbjct: 1 MAKILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ +P++ V+A D + G + YI+KP S +K + Sbjct: 61 LEVCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + +L + +E G+ +Q NG AL++A+ PD+I++DI L G Sbjct: 1 MPKILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIMLPGQDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + + +D+ + IP+I ++A + D+ + G + YI+KP S + IK + Sbjct: 61 LSVCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 176 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D L R +E G+ L+ +G + L++ R+ PD++I+D+ + E+ G Sbjct: 7 RRILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDGW 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E +IPV+ +TA D + G + Y++KP ++ I+ + Sbjct: 67 EVCRRLRE---FSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123 >gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 229 Score = 176 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E GY + + AL++ + PD++++D S Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D + IP+I +TA + D+ R + G + +++KP S + IK + Sbjct: 61 GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVM 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 235 Score = 176 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 71/123 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED ++L R +E GY + T NG LE ++ PD++++D+ L +I Sbjct: 1 MAHTILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K D L+ IP+I +TA + + D+ + G + YI+KP S+ + IK + Sbjct: 61 GIDVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 240 Score = 176 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 73/122 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+++ED ++L R +E +GY + + NG E LE A + KPD++I+D+ L ++ Sbjct: 1 MPYTVLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K +K++ + + IP+I +TA + + D+ + G + YI+KP S+ + IK + Sbjct: 61 GLEICKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 176 bits (449), Expect = 8e-43, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IV+D+ ++ +D + + L NG EAL+LA Q PD++++D+ + + Sbjct: 1 MKPKVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ EL +IP+I +TA + D+ R + G + Y++KP S + I+ + Sbjct: 61 GWEVCSRL---HELSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAIL 117 Query: 121 GEA 123 A Sbjct: 118 ARA 120 >gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 237 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ +L + +E G+ R+G ALE + +PD+I++D+ L + GLE Sbjct: 2 KILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLMLPGLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +I++ +++ ++ +TA + D G + Y+ KP S + I+ + + Sbjct: 62 VCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRRS 121 >gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 236 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++V+D + ++L R +E GY + +G ALE + KPD+I++DI L + Sbjct: 1 MSKPKILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLPGV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ + ++ D E Q IP+I +TA + D+ + G + Y++KP S + IK Sbjct: 61 DGLEVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKAR 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] Length = 236 Score = 176 bits (448), Expect = 9e-43, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + + +E G+ +G EA+E ++ +PD+I++DI L Sbjct: 1 MDKRILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ +IP+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKS---YDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 68/121 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+ + +L +E GY + G +ALEL + KPD++++D+ L E+ G Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K+I+ + E IP+I ++A D + G + YI+KP S + IK + Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 122 E 122 E Sbjct: 121 E 121 >gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M +++V+D L R +E +GY+ NG EALEL +PD++I+D+ + + Sbjct: 1 MAATHILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVMMPHL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++I++ +P+I +TA + D + G + Y+ KP S + + ++ Sbjct: 61 DGFSTCERIRQ---FSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAV 117 Query: 120 IGEA 123 + A Sbjct: 118 LRRA 121 >gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 238 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + G+ + +G E L + PD++I+D+ L +I G Sbjct: 1 MKKILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I++ +P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVCREIRK---TSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L R + GY +G E LE KPD++++D+ + + GLE Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ PV+ +TA D+ + G + Y+ KP + IK + Sbjct: 65 VCRRIRKAG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus] Length = 235 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + GY + +G EALE KPD++I+D+ L E+ G Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI K+I++ P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEIVKEIRK---TSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L R + GY +G E LE Q KPD++++D+ + ++ GLE Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ PV+ +TA D+ + G + Y+ KP + IK + Sbjct: 65 VCRRIRKAG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED +L R +E G+ L+ +G EAL LARQH PD++++D+ + Sbjct: 1 MSQQILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGPD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI + + +E IPV+ +TA + D G + Y+ KP S+ M I+ + Sbjct: 61 GFEICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU121] Length = 236 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +ET+GYI +G EAL+ +PD+I++D+ L + Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 229 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED ++ +++ G+ + + L + PD++++D L S Sbjct: 1 MTANILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +++D ++IP+I +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQLAKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus CNRZ1066] Length = 235 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + GY + +G EALE KPD++I+D+ L E+ G Sbjct: 1 MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI K+I++ P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEIVKEIRK---TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 244 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IV+D+E +L + Y +G EAL+L ++ PD++++D+ L + Sbjct: 1 MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ +I++ P+I ++A D+ K G + YI KP + + + Sbjct: 61 DGYQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGAL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. ND132] gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans ND132] Length = 228 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M +K+++VED+ +L + + +G+ +G L LA KPD+I++D+ + Sbjct: 1 MSAQKILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLMMPGT 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +Q+K D IPVI +TA + D+ + G + Y+ KP S + IK Sbjct: 61 DGLEVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAI 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D +L +K R +E G +G EALE A+ + D+I++D+ L ++ Sbjct: 1 MSRKVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+E +P+I +TA D+ + G + Y++KP ++ IK I Sbjct: 61 GLEVCQQIRE---FSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAII 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 175 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 1 MSKKILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] Length = 234 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+++SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKNSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 71/119 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E +L + +E SGY + NG++A++ A++ P++I++DI L + G + Sbjct: 5 KILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGMDGYD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I++D+ + P+I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 65 VCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRR 123 >gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 238 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + L + +ET+GYI +G EAL+ +PD++++D+ L ++ Sbjct: 1 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] Length = 229 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D ++ ++ GY + +A + + PD+I++D L IS Sbjct: 1 MPATILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++K + + +P+I +TA + D+ R G + YI+KP S + + +K + Sbjct: 61 GVDLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum EA 2018] Length = 232 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 68/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E +KL + +E +GY + +G EALE A+ P ++++D+ L + G + Sbjct: 5 KILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ D + +PVI +TA + D+ + G + YI+KP S+ + +K + Sbjct: 65 VCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRR 123 >gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 229 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + AL ++ PD+I++D S Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+D ++IPVI +TA + D+ + + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L R + GY +G E LE KPD++++D+ + + GLE Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ PV+ +TA D+ + G + Y+ KP + IK + Sbjct: 65 VCRRIRKAG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120 >gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 237 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY + +G EAL+ PD+I++D+ L +I Sbjct: 1 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 175 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E GY ++ + + L R+ P++I++D + S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ KQ+K+D ++IPV+ +TA + D+ R + G + YI+KP S + + Sbjct: 61 GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] Length = 234 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 69/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++L + +E GY L+ +G+ ALE+ ++ PD++I+DI L +SGLE Sbjct: 2 KILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIMLPGMSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+ + + EIP+I ++A + D+ + G + Y+ KP S + +K + Sbjct: 62 VCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRR 120 >gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 236 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++VED+ +L +E G+ L+ +G EALE+ + D++++D+ L I G Sbjct: 8 ATVLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGW 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +QI+ +S+L PVI +TA D+ + + G + Y+ KP + +K + Sbjct: 68 EVCRQIRSNSQL---PVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRR 124 Query: 123 A 123 A Sbjct: 125 A 125 >gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 236 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + KPD++I+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 230 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + + +G+ + AL+ + PDVI++D L +S Sbjct: 1 MAANILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++++ D+ Q +P+I +TA + D+ G + YI+KP S + IK + Sbjct: 61 GIDLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] Length = 239 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + A+ L ++ PD+I++D S Sbjct: 11 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+D ++IP+I +TA + D+ + + G + YI+KP S + IK + Sbjct: 71 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 130 Query: 121 GEA 123 + Sbjct: 131 RRS 133 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + +++ + + GY +G EALE + +PD+II+D+ L ++ G Sbjct: 1 MKKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51] gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 238 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+ + +L ++ GY + G AL+L + KPD++++D+ L E+ G Sbjct: 5 MVKILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPELDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I+ + E +P+I ++A D + G + Y++KP S + IK + Sbjct: 65 LEVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLR 124 Query: 122 E 122 E Sbjct: 125 E 125 >gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella avium 197N] gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella avium 197N] Length = 232 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L +S Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +++++D + +PVI +TA + D+ + G + YI+KP S M IK + Sbjct: 61 GLSLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 229 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G++ + AL+L + PD++++D S Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D ++IP+I +TA + D+ R + G + Y++KP S + IK I Sbjct: 61 GIQLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVI 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 241 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D E L + +E SG+ +G E L LA+ D++I+D+ L +I Sbjct: 1 MAQRILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I KQ++++ ++ P++ +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 GLDICKQLRQNKKM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] Length = 234 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 234 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis] Length = 233 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + G+ +G EALE ++ +PD+I++D+ L ++ G Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++I++ + P+I V+A + D+ + G + Y++KP S + IK + Sbjct: 61 LDVAREIRK---TSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 236 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED E ++ + +E Y NG E ++ H+PD+II+D+ + + G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 61 WELCGEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 233 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 6/125 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K K+++V+D E + + + +E GY + +G EA++L ++ ++I+D+ L + Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ISG E+ +I+E +P+I +TA + D+ G + Y++KP S+ + +K Sbjct: 61 ISGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117 Query: 119 YIGEA 123 I A Sbjct: 118 LIRRA 122 >gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 256 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V+IVED E ++ + +E Y NG E +L H+PD+II+D+ + + Sbjct: 20 MKRRVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKD 79 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 80 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIIL 136 Query: 121 GE 122 Sbjct: 137 RR 138 >gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842] gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842] Length = 235 Score = 174 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 229 Score = 174 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + AL + + PD++++D + Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWMFPGGN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D + IP+I +TA + D+ R + G + +++KP S + IK + Sbjct: 61 GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVM 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 235 Score = 174 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 70/121 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D ++L R +++ G+ ++G+ A++ ++PD+I++D+ L I G Sbjct: 1 MAKILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + +++ E +IPVI VTA + + D+ + G + Y++KP S + +K + Sbjct: 61 LEVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 234 Score = 174 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 174 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23] gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23] gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 237 Score = 174 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY + +G EAL+ PD+I++D+ L +I Sbjct: 1 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 234 Score = 174 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L R + GY +G E L+ Q KPD++++D+ + ++ GLE Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ L PV+ +TA D+ + G + Y+ KP + IK + Sbjct: 65 VCRRIRK---LGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120 >gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J] gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J] Length = 236 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + KPD++I+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFEEEKPDLVILDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D L R +E G+ ++ +G + L++ R PD++I+D+ + E+ G Sbjct: 7 RRILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDGW 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E ++PV+ +TA D + G + Y++KP ++ I+ + Sbjct: 67 EVCRRLRE---FSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123 >gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D +L +K R +E GY +G EAL +A+++ D+I++D+ L +++ Sbjct: 1 MANRVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ +QI+E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GLDVCQQIRE---FSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 228 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L ++ Y NG EAL+L ++ ++++D+ + E+ GL Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+E +P+I +TA + + D K G + YI+KP S + I+ + + Sbjct: 67 ACMRIRE---FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 >gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 257 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] Length = 229 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E GY ++ + + L R+ P++I++D + S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVREPYPELIVLDWMMPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ KQ+K+D ++IPV+ +TA + D+ R + G + YI+KP S + + Sbjct: 61 GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 238 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY + +G EAL+ PD+I++D+ L +I Sbjct: 2 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 62 GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 228 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D EL L R +E G+ R+G EAL PD++I+DI L ++ G Sbjct: 5 TILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDGWA 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ P+I +TA + D + G + Y+ KP S + IK + A Sbjct: 65 VCREIRK---TMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRA 121 >gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L S Sbjct: 1 MSTTILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGAS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + + ++ D + +PVI +TA + D+ + G + YI+KP S + IK + Sbjct: 61 GITLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 236 Score = 174 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+E + PD+II+D+ L + G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K++++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 264 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + R + GY +G EAL+ A PD++++DIQ+ + GL Sbjct: 33 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGL 92 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA GD G + Y+ KP L I+ + Sbjct: 93 TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 150 Query: 123 A 123 + Sbjct: 151 S 151 >gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV+IVED +L +E GY +G + +EL R PD++++DI L + Sbjct: 1 MAQKVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E + PVI +TA D+ +GG + YI KP + + I + Sbjct: 61 GWSVLKKIRESDKT---PVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 236 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + + KPD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I +D E +L R +E G+ + +G + L++ + D++++D+ + + G Sbjct: 1 MKTILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K ++ + ++IP++ +TA + D G + YI KP S + +K + Sbjct: 61 WTVCKMLRRE---RKIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363] gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp. cremoris NZ9000] gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis CV56] Length = 233 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + G+ +G EALE ++ +PD+I++D+ L ++ G Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++I++ + P+I V+A + D+ + G + Y++KP S + IK + Sbjct: 61 LDVAREIRK---TSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] Length = 229 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED ++ +++ G+ + A+ + + PD+I++D S Sbjct: 1 MTAKILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++D ++IP+I +TA + D+ R + G + Y++KP S + IK + Sbjct: 61 GIQLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 229 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + A+ L ++ PD+I++D S Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+D ++IP+I +TA + D+ + + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis serovar chinensis CT-43] Length = 235 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 235 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1114 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+++ + + +GY NG +AL + + +PD+I++DI + E+SG E+ Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVEEQRPDLILLDIMMPEMSGYEV 766 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + E+P++ ++A D + + G Y++KP + + I+ Y+ Sbjct: 767 CTILRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 822 >gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] Length = 345 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ ++ ++ +GY +G AL A H+PD++++D+ L + GLE Sbjct: 15 HVLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLMLPGMDGLE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E + +PV+ +TA + D + G + Y++KP S + + + Sbjct: 75 VCRRLRERAA---VPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRR 130 >gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] Length = 230 Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 66/120 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E L + GY L +G EAL + KPD+I++D L ++SG+E Sbjct: 5 RILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ E + IP+I +TA A +GD R G + Y+ KP S+S IK + A Sbjct: 65 VCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRA 124 >gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] Length = 235 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 248 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I+ED E ++ + +E GY NGME +L H+PD+I++D+ + + Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMPKKD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 69 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIIL 125 Query: 121 GE 122 Sbjct: 126 KR 127 >gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + + KPD++I+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] Length = 236 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + L R +E SG+ + +G EAL + PD++++D L +SG+E+ Sbjct: 9 VLVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRINEAMPDLVLLDWMLPTMSGIEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q++ + +PVI +TA A D R + G + YI+KP S + I+ + + Sbjct: 69 CRQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRS 127 >gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 229 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + A+ L ++ PD+I++D S Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+D ++IP+I +TA + D+ + + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EALE R+ +PD+I++D+ L ++ G Sbjct: 1 MKKILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---TFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W] gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II] Length = 238 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY + +G EAL+ PD+I++D+ L +I Sbjct: 2 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 62 GLEVARQIRKE---HDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 236 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + + KPD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + ++ + + GY +G EALE + +PD+II+D+ L ++ G Sbjct: 1 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 174 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L R +E GY T +G++A++ HKPD++++DI L + G + Sbjct: 5 KILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ SE PVI +TA D+ + G + YI KP + IK + Sbjct: 65 VCREIRKKSEK---PVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRR 120 >gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 70/119 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E +L + +E +GY + NG++AL++ ++ P +I++D+ L + G + Sbjct: 5 KILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGYD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ D+ + IPVI +TA + D+ + G + Y++KP S+ + +K + Sbjct: 65 VCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRR 123 >gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 248 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++L ++ G+ + NG +AL++AR PD+II+D+ L ++SG + Sbjct: 2 KILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGFD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + ++ D IP++ TA D + G + Y++KP S + + +K + A Sbjct: 62 ICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRRA 121 >gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] Length = 237 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++ I+ED + ++ + +E+ GY NG E L +Q++PD+I++D+ + + Sbjct: 1 MTTRIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA A + D G + Y++KP S + ++ + Sbjct: 61 GWELCEEIRQHS---NVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 13 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 72 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 73 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 129 Query: 120 IGE 122 + Sbjct: 130 LRR 132 >gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] Length = 230 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK +++VED E + L + G+ G E LE + PD++++D+ L + Sbjct: 1 MAKKHILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETLAEDPPDLVVLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL++ + +KE+++ + I V+ VTA + D + G + Y++KP S I + I+ Sbjct: 61 DGLQVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241] gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L] gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1] gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str. CNEVA-9066] gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055] gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str. Western North America USA6153] gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger B] gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str. Vollum] gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str. Australia 94] gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI] gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241] gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L] gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1] gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar anthracis str. CI] gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016] gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 240 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D E +L + +E +GY + GMEAL++A++ +P +I++D+ L + Sbjct: 10 MSKEKILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGM 69 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I++D + P++ +TA + D+ + G + YI+KP S+ + +K Sbjct: 70 DGYDVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAI 129 Query: 120 IGE 122 + Sbjct: 130 LRR 132 >gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 72/121 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D E +L + +E +GY + NG++AL + ++ KPD++++D+ L + G Sbjct: 3 MEKILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLMLPGMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+I++D+ + +I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 63 YDVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|110640660|ref|YP_668388.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 536] gi|110342252|gb|ABG68489.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 536] Length = 243 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 235 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D + + + +E GY + +G EAL+ PD+I++D+ L +I Sbjct: 1 MAKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ KQ++ + P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAKQVRAK---RSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+E ++ R +E GY + NG ALE R+ D++I+D+ + + G Sbjct: 2 KILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++++++ IP+I +TA + D G + Y+ KP S +K + Sbjct: 62 VCKVLRKETK---IPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRR 117 >gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I+ED + ++ + +E GY NG E + +Q++PD+II+D+ + + Sbjct: 1 MKKRIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ +P+I +TA + D G + Y++KP S + ++ + Sbjct: 61 GWELCEEIRQ---YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 230 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 68/123 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED +L R + GY+ L+ +G AL LAR+ +PD+I++D+ L + Sbjct: 1 MTGKILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + +K SE + +I +TA A + D+ + G + Y+ KP S + IK + Sbjct: 61 GLDVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] Length = 229 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ AL L R PD++++D L S Sbjct: 1 MAANILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLPGAS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+++ D + IP+I +TA + + D+ + G + YI+KP S + IK + Sbjct: 61 GIDVAKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|86610346|ref|YP_479108.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558888|gb|ABD03845.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 373 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D+ + + +E GY NG E LE A P +II D + ++ G Sbjct: 1 MTTILIVDDDPTIRLVLKRSLERQGYTVEMASNGSEGLEQAHLLVPGLIICDWMMPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++IK D + I +TA D + G + ++SKPI + ++ + Sbjct: 61 LEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGLR 120 >gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 232 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++VED++ + L+ GY +G+EAL + PD++++DI L E G Sbjct: 1 MKKILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + +P+I +TA + D+ K G + YI+KP + I+ + Sbjct: 61 WEVCKEIRK---ISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 239 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + L + +E SGY + +G EALE A + PD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ+++ + +P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAIL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] Length = 237 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+E +L + +G+ + NG +AL L ++ PD++++D+ L + G + Sbjct: 11 TILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDGYQ 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I K ++ D + +P+I +TA + D G + YI+KP S I + +K + + Sbjct: 71 ICKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRRS 130 >gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS678] Length = 229 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + A+ L ++ PD+I++D S Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+D ++IP+I +TA + D+ + + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 245 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++++D+ +L +E +GY Q +G++ LA Q PD+I++D+ L + Sbjct: 1 MMPRILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++ D +IPV+ +TA D+ G + Y++KP L + ++ + Sbjct: 61 GFTVCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603] Length = 236 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +ET+GYI +G EAL+ +PD+I++D+ L + Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 245 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE+ + PD++++D+ + ++ G Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++DS ++P+I +TA D + G + Y+ KP S I+ + A Sbjct: 71 VCQELRKDS---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRA 127 >gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 237 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + + ++ GY + +G EAL+ + PD+I++DI L Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] Length = 232 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++VED++ + L+ GY +G+EAL + PD++++DI L E G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + +P+I +TA + D+ K G + YI+KP + I+ + Sbjct: 61 WEVCKEIRK---ISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] Length = 229 Score = 173 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D ++ ++E +G+ A++ + A+ + PD+I++D L S Sbjct: 1 MSRRILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLMEPYPDMILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+IK+ + IP+I +TA + D+ + + G + Y++KP S M IK I Sbjct: 61 GIQIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D +L +K R +E G +G EA+E A+++K D+I++D+ L ++ Sbjct: 1 MSRKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+E +P++ +TA D+ G + YI+KP ++ IK + Sbjct: 61 GLEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 272 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M VMIVED E + L + ++ GY + +G EA L R+ PD+I++D L +S Sbjct: 42 MKPSVMIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWMLPGLS 101 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + D R G + Y++KP S++ + I+ + Sbjct: 102 GIELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVM 161 Query: 121 GE 122 Sbjct: 162 RR 163 >gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555] gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555] Length = 231 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D E +L + +E +GY + GMEAL++A++ +P +I++D+ L + Sbjct: 1 MSKEKILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I++D + P++ +TA + D+ + G + YI+KP S+ + +K Sbjct: 61 DGYDVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAI 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563] Length = 238 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + ++ GY +G +ALE +PD++++D+ L +I G Sbjct: 1 MKKILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +QI++DS+ +P+I +TA + D+ + G + Y++KP S M +K I Sbjct: 61 LEVCRQIRKDSQ---VPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 228 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IV+D E ++L + +E G+ +G +ALE + PD++++D+ L I Sbjct: 1 MPKTSILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ + +K IP+I +TA + D R + G + Y++KP S + + ++ Sbjct: 61 DGLEVARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAV 120 Query: 120 IGE 122 + Sbjct: 121 MRR 123 >gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++VEDN ++ R+ + GY NG+E L R H PD+I++D+ + + G Sbjct: 1 MKTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE ++ + D PV+ +TA + D+ + G + Y++KP S++ + I+ + Sbjct: 61 LEFLRKYRAD---AGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] Length = 228 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED ++ + S Y Q +G L L + PD++++D L +SG Sbjct: 1 MVKILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++K +++P+I +TA + D+ R + G + +++KP S + IK + Sbjct: 61 IDFARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces clavuligerus ATCC 27064] Length = 342 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + + + GY +G++AL A ++PD++++DIQ+ + GL Sbjct: 108 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 167 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ +PV+ +TA GD G + Y+ KP L I+ + + Sbjct: 168 AARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 225 >gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D +L +K R +E G +G EA+E A+ +K D+I++D+ L ++ Sbjct: 1 MSRKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+E +P++ +TA D+ G + YI+KP ++ IK + Sbjct: 61 GLEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 237 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IV+D ++ R + G+ + +G AL R D++I+DI L +I G Sbjct: 8 ARILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGW 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ + ++P++ +TA + D + G + YI KP S + +K + Sbjct: 68 EVCREIRK---ISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRR 124 Query: 123 A 123 A Sbjct: 125 A 125 >gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 236 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + + KPD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ +P+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 340 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + + + GY +G++AL A ++PD++++DIQ+ + GL Sbjct: 106 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 165 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ +PV+ +TA GD G + Y+ KP L I+ + + Sbjct: 166 AARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 223 >gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 237 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + + ++ GY + +G EAL+ + PD+I++DI L Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus 16] Length = 1111 Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 64/115 (55%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + GY ++G+EA E KP+++++DI + +SG ++ Sbjct: 708 LVVDDEPVNLRVLDSFLRLEGYRVQTAKDGLEAFEKLEAEKPELVLLDIMMPGMSGYQVC 767 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++D + ++PVI +TA D R + G Y+SKP + I+ ++ Sbjct: 768 EKLRQDYDHAQLPVIMLTALNQADDRLRGFEAGANDYLSKPFNKQELAARIRAHL 822 >gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] Length = 233 Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 71/120 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED +L +E +G+ + T +G + + A+ P +I++D L +SG+E Sbjct: 8 KILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDENPALIVLDWMLPGLSGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ D++ ++IP+I +TA +GD+ R G + YI KP S++ + ++ +I A Sbjct: 68 VCRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRRA 127 >gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 235 Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L ++ SGY +G AL+ A + D++++DI L E+ GLE+ Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q+K D + IP+I +TA A + D + G + Y+ KP S+ + +K + + Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 >gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] Length = 240 Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++IV+D ++ +E +GY L+ N +A + KPD+I++D + ++ Sbjct: 6 MSSRSILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQV 65 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E +++K D EIP+I +TA + + + G + YI+KP S + +K Sbjct: 66 SGVEFARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAV 125 Query: 120 IGEA 123 + + Sbjct: 126 LRRS 129 >gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 229 Score = 173 bits (441), Expect = 7e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 251 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL RQ +PD++++D+ + ++ G Sbjct: 11 KILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVMMPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 71 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] Length = 236 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ ++ + A L R PD++++D L +S Sbjct: 1 MPANILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ ++++ + +EIP+I +TA + D+ + G + YI+KP S + IK + Sbjct: 61 GIDFARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 233 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L R +E G+ ++NG+ ALE+ +Q +PDVII+D+ L + GLE+ Sbjct: 3 ILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 63 CARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRRS 121 >gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301] gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T] gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401] gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 301] gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 2457T] gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5 str. 8401] gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella flexneri 2002017] gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2a str. 2457T] gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2747-71] gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-671] gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2930-71] gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-304] Length = 229 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 71/122 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + +++ + +E GY + R+G AL+LAR KPD+II+DI L E G Sbjct: 1 MPSVLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++++ + + IP+I V+A + D+ + G + Y++KP S + +K + Sbjct: 61 LAVCRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 233 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L R +E G+ ++NG+ ALE+ +Q +PDVII+D+ L + GLE+ Sbjct: 3 ILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 63 CARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRRS 121 >gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 235 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + ++ GY L +G EALE ++PD+I++D+ L + G Sbjct: 1 MKKILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I++ +P+I +TA + D+ + G + Y++KP S IK + Sbjct: 61 LEVCREIRK---TSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1] gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1] Length = 239 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + L + +E +GY + +G E +LA + PD++I+D+ L +I Sbjct: 1 MSKKILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQI++ + IP++ +TA + D+ + G + Y++KP S M +K + Sbjct: 61 GIEVCKQIRQQKVM--IPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125] gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125] Length = 236 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + +E G+ + +G EA+E Q KPD+I++DI L G+ Sbjct: 4 KKILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDGM 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKQFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120 >gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 229 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ +++ G+ + A+EL ++ PD+I++D S Sbjct: 1 MTARILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+D ++IP+I +TA + D+ + + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 229 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] Length = 236 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + L + +ET+GYI +G EALE + +PD+I++D+ L + Sbjct: 1 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|296133006|ref|YP_003640253.1| response regulator receiver modulated diguanylate cyclase [Thermincola sp. JR] gi|296031584|gb|ADG82352.1| response regulator receiver modulated diguanylate cyclase [Thermincola potens JR] Length = 314 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 71/121 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++++D++ +++ +D +E G+I + A+EL Q PD+I++D+ L +++G Sbjct: 7 QRILVIDDDKFMVRIIKDCLEKVGFIVYGAEDFSSAMELIYQMTPDLILLDVVLPKMNGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ D+ +P+I +T+ AM D+ + G + YI+KP + +K ++ Sbjct: 67 EICRLLRNDTRTSHVPIIMITSKAMTEDKVAGLEAGADDYITKPFDPLELVARVKTHLRR 126 Query: 123 A 123 A Sbjct: 127 A 127 >gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1] gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1] Length = 235 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EAL+ + PD+I++D+ L ++ G Sbjct: 1 MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVARQVRKN---YDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L +E +GY + R+G EALE A +PD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRIQKMM--FPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAIL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] Length = 251 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ ++L + GY L+ +G EAL+LA + D+ I+DI L + G Sbjct: 16 KKILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDGF 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + + PVI ++A + D+ + G + YI+KP S+ + +K Sbjct: 76 ELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 135 >gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6] gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 251 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 18 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 78 LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 134 Query: 122 EA 123 + Sbjct: 135 RS 136 >gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 231 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + R +E GY + +G++ LE AR+ PD+I++DI L + G Sbjct: 1 MPTILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++S ++P+I +TA + D + G + YISKP SL F+ I+ + Sbjct: 61 FSVCRILRQES---DVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 236 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+IV+D + + + + GY + +G EA+ + KPD++I+D+ L E+ G Sbjct: 1 MKKVLIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEKPDLVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] Length = 240 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + +K ++ GY +G EA+ELAR+ K D+II+D+ + +I G Sbjct: 8 MAKILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMPKIDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+ +I+E +P+I +TA + D+ + G + YI+KP ++ ++ + Sbjct: 68 LQACMRIRE---FSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLR 124 Query: 122 EA 123 + Sbjct: 125 RS 126 >gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 110-3] gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H263] Length = 229 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] Length = 229 Score = 173 bits (440), Expect = 8e-42, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E GY ++ + + L + P++I++D + S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVCEPYPELIVLDWMMPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ KQ+K+D ++IPV+ +TA + D+ R + G + YI+KP S + + Sbjct: 61 GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L +E +GY + R+G EALE A +PD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRIQKMM--FPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAIL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB [Shewanella denitrificans OS217] gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 229 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ ++E G+ + + A+ L ++ PD+I++D S Sbjct: 1 MTARILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++K+D ++IP+I +TA + D+ + + G + YI+KP S + IK + Sbjct: 61 GIQLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394] gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782] gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394] gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782] Length = 236 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + + KPD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ +P+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] Length = 237 Score = 173 bits (440), Expect = 9e-42, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVED + + + +E GY L+ +G L+LA + PD++++D+ L + Sbjct: 1 MGKTVLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E +P++ +TA + D+ + G + YI+KP + + +K I Sbjct: 61 GFEVCRRIRETG--SAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANI 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 238 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + + GY +G EAL+ + PD+II+D+ L +I Sbjct: 1 MAKKILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++ P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRK---TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 237 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + + ++ GY + +G EAL+ + PD+I++DI L Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 235 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D + + + +E GY + +G E LE +PD+II+D+ L +I Sbjct: 1 MANKVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+++ P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAKRVRAK---HNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EALE + +PD+I++D+ L ++ G Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197] gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae] gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae Sd197] gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] Length = 229 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638] gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 229 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K IK ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 235 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++L R +E +GY +G AL+ RQ PD+II+DI L I GLE Sbjct: 5 TILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ ++P+I +TA + D+ + G + YI+KP + + +K + Sbjct: 65 VCKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRR 123 >gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 229 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E +GY ++ + A+ + PD++++D L S Sbjct: 1 MAKRILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ+K DS ++IPV+ VTA + D R G + YI+KP S + IK + Sbjct: 61 GIQLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter turnerae T7901] gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB [Teredinibacter turnerae T7901] Length = 235 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + R +E + Y L+ + EA ++ +PD+I++D + +SG+ Sbjct: 4 KKILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWMMPGVSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +++K +EIP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 EFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1] gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1] Length = 223 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ + D +++DI + E+ Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 235 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E GY + +G EALE PD+II+D+ L ++ Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+++ P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAKRVRAK---HTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I++D+ ++ + +E G+ + NGM+ + + + PD++I+DI L + G E Sbjct: 2 KILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + IP+I +TA D+ + G + YI KP + IK + Sbjct: 62 VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 228 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+D E ++ R +E G++ L+ ++G EAL+ +HK D+II+D+ L EI G Sbjct: 1 MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI K+I++ +P+I +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 MEIAKEIRK---TSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|156743164|ref|YP_001433293.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus castenholzii DSM 13941] gi|156234492|gb|ABU59275.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus castenholzii DSM 13941] Length = 443 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I +D +L ++ + GY T+NG + + A++ PD++I+D+ + ++ Sbjct: 1 MTKRILIADDEPAVRQLLELVLRSQGYEVFVTQNGDQLVRTAQEWIPDLVIVDLMMPQMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +Q++ D+ +P++ +TA + D G + YI+KP ++ + I+ ++ Sbjct: 61 GYEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYITKPFNIPELLARIRAHL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 231 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++VED E +L R + GY +G EAL A + PD+I++D+ L Sbjct: 1 MGKEKILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAATEFAPDLILLDLMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL + +++K D+ IP+I +TA + + D + G + Y+ KP S + + IK Sbjct: 61 MDGLAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKS 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|315181014|gb|ADT87928.1| Response regulator [Vibrio furnissii NCTC 11218] Length = 203 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1] gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1] gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 235 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EAL+ + PD+I++D+ L ++ G Sbjct: 1 MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVARQVRKN---YDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 251 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L R +E Y + NG EA+ + D+I++D+ + G+E Sbjct: 19 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 79 VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 135 >gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio angustum S14] gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium angustum S14] Length = 1114 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+++ + + +GY +G +AL++ +Q +PD+I++DI + E+SG E+ Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQALDIVQQQRPDLILLDIMMPEMSGYEV 766 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + E+P++ ++A D + + G Y++KP + + I+ Y+ Sbjct: 767 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 822 >gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E+ G+ ++ +G EAL L + +PD+I++D L SG+EI Sbjct: 8 VLVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWMLPGTSGIEI 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIK + PVI ++A + + D+ R + G + YISKP S+ + +K ++ + Sbjct: 68 CRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRRS 126 >gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ ++ + +E G+ + NG++ + + + PD++I+DI L + G E Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + IP+I +TA D+ + G + YI KP + IK + Sbjct: 62 VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] Length = 227 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V I ED + L + +E G+ NG EAL+ + +PD+I+MD L ++S Sbjct: 1 MSAHVFIAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K +K+D + +IP+I +TA + D+ + G + Y++KP S IK + Sbjct: 61 GVDICKNLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ ++ + +E G+ + NGM+ + + + PD++I+DI L + G E Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + IP+I +TA D+ + G + YI KP + IK + Sbjct: 62 VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + K+++V+D E +L + +E Y NG +AL++A +++ D+I++D+ + Sbjct: 1 MSQDAKILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G+E+ ++I++ + P+I +TA + + + + G + YI KP S + +K Sbjct: 61 IDGIEVCEEIRKH---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKA 117 Query: 119 YIGEA 123 + + Sbjct: 118 LLRRS 122 >gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 226 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++++D E +L + +ET+GY +G E + D+II+D+ L I G Sbjct: 1 MEKILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRLND-SIDLIILDLMLPRIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +Q++ ++ ++IP+I +TA + D+ + G + YI+KP S + IK + Sbjct: 60 LSFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L + G Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D EIPV+ +TA + D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 4343-70] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB [Pelagibaca bermudensis HTCC2601] gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. HTCC2601] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 66/120 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ R +E G+ NG EAL + + +PDVI++D L +SG+E Sbjct: 7 TVLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWMLPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QIK E + +PVI ++A + + D R + G + Y+ KP SL M +K + A Sbjct: 67 VCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRA 126 >gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes] Length = 239 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + + KPD+II+D+ L E+ G Sbjct: 4 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ +P+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 64 LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 235 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +ET GY G EA ++ PD++++D L +S Sbjct: 1 MTARILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 236 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + GY +G+EAL+ +PD+I++DI L + Sbjct: 3 MEKKILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 63 GMEVCREIRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] Length = 230 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY ++ + AL L + PD+I++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K I Sbjct: 61 GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334] gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334] Length = 234 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 236 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + GY +G EALE + +PD+I++DI L + Sbjct: 1 MDKKILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ +P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|531494|emb|CAA56927.1| phoB [Shigella flexneri] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590] gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590] Length = 249 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + L + +ET+GYI +G EALE + +PD+I++D+ L + Sbjct: 14 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKD 73 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 74 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 131 Query: 121 GEA 123 + Sbjct: 132 RRS 134 >gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933] gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. Sakai] gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227] gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. W3110] gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89] gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1] gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A] gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS] gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739] gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5] gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94] gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC4024] gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11] gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str. E2348/69] gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1] gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88] gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a] gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989] gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39] gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026] gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606] gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. TW14359] gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9] gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B] gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. FRIK2000] gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str. FRIK966] gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736] gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9] gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or CreC) [Escherichia coli O157:H7 str. EDL933] gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli] gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB [Escherichia coli str. K-12 substr. MG1655] gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli O157:H7 str. Sakai] gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150] gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227] gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K12 substr. W3110] gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli UTI89] gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC O1] gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli HS] gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E24377A] gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli SMS-3-5] gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii CDC 3083-94] gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11] gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli] gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O127:H6 str. E2348/69] gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli 55989] gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI1] gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli S88] gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI39] gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli ED1a] gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli UMN026] gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia coli LF82] gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli B str. REL606] gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BL21(DE3)] gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. TW14359] gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli DH1] gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15] gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator [Escherichia coli 042] gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli IHE3034] gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU 83972] gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146] gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator [Escherichia coli ETEC H10407] gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG 857C] gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli W] gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1] gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 85-1] gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 153-1] gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 3431] gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112] gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83] gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC1212] gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327] gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B] gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. G5101] gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. 493-89] gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H 2687] gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA 5905] gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. LSU-61] gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli EPECa14] gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E128010] gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella sonnei 53G] gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli LT-68] gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1180] gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli RN587/1] gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli KO11] gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1520] gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E482] gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H120] gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H252] gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H489] gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M863] gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA007] gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TW10509] gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 57-2] gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 60-1] gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 117-3] gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1167] gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044] gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125] gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli STEC_7v] gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Escherichia coli AA86] gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 155-74] gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 5216-82] gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 3594-74] gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9] gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 244 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + R + GY +G EAL+ A PD++++DIQ+ + GL Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA GD G + Y+ KP L I+ + Sbjct: 73 TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 Query: 123 A 123 + Sbjct: 131 S 131 >gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum 3TCK] Length = 1117 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 65/115 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + + GY L +G +AL++ Q +P +I++DI + E+SG E+ Sbjct: 712 LVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEVC 771 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++E+ L E+P+I ++A D + + G Y++KP + + I ++ Sbjct: 772 HILREEHSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHL 826 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D E + L + +E SGY + +G L+LA+ D+II+D+ L E+ Sbjct: 1 MTQRLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ KQ+++ + P++ +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 GLDVCKQLRQSKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] Length = 236 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY +G EA+++A + KPD++++DI L Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREIRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K IK ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 242 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE RQ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469] gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia fergusonii ATCC 35469] gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia fergusonii B253] gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4] Length = 238 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + L + +E +GY L +G E ELA KPD I++D+ L ++ Sbjct: 1 MSKKILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K +++ + P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 GIEVCKNLRQQKMM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila SL1] gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family [Halorhodospira halophila SL1] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED+ ++ +E G+ + + M+ E RQ PD+I++D L ++S Sbjct: 1 MAVRILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +++KED + ++IP+I +TA + D+ R G + Y++KP S +K + Sbjct: 61 GVEWARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 230 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED+E ++L E++G+ G E LE+A + KP ++++D+ L + Sbjct: 1 MTKERILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ +++K E +++PVI +TA + D + G + Y+ KP S + I+ Sbjct: 61 SGLDVCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAV 120 Query: 120 IGEA 123 + A Sbjct: 121 LKRA 124 >gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++V+D E + + + +E Y + +G EA++L ++ +II+D+ L + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG E+ +I+E S +P+I +TA + D+ G + Y++KP S+ + +K Sbjct: 61 LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117 Query: 119 YIGEA 123 I A Sbjct: 118 LIRRA 122 >gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032] gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB [Cronobacter turicensis z3032] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K IK ++ +EIPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894] gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K IK ++ +EIPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185] gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W] gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185] Length = 342 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + MEAL+L + + D+II+DI + + Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + IP+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 175 GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 231 Query: 121 GE 122 Sbjct: 232 RR 233 >gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 236 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ K++++V+D + + + ++ GY + +G EAL+ + PD+I++DI L + Sbjct: 1 MMEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + ++ Sbjct: 61 DGMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-272] gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-227] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + ++ + + GY +G EALE + +PD+II+D+ L ++ GL Sbjct: 51 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 110 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 111 EVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 167 >gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 233 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 61/123 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D+ +L + GY +G EAL + D+I++D+ + + Sbjct: 1 MTRTILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ D + +P++ V+A A D+ G + Y++KP + +K + Sbjct: 61 GLELCRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 227 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED+E ++L + +E++GY A+ +G+EAL AR+H PD+I++D+ L + Sbjct: 1 MAKETILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K++K SE IP++ +TA + D + G + Y+ KP S + ++ Sbjct: 61 DGFEVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or CreC) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi] gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 70/124 (56%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++IVED+ + L IE +G+ ++ +G ALE+ R+H PD++++D+ + I Sbjct: 1 MPKARILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMIPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K++K +E + IPVI +TA + D + G + Y+ KP S + I+ Sbjct: 61 DGFEVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAI 120 Query: 120 IGEA 123 + + Sbjct: 121 LRRS 124 >gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] Length = 241 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E GY + +G EALE KPD+II+D+ L +I Sbjct: 7 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKID 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+++ P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 67 GLEVAKRVRAK---HTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] Length = 251 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 67/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED+ + + R +E +GY ++ +G+ LA Q PD+II+D+ L ++ G Sbjct: 1 MARILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ + EIP++ +TA D+ G + Y++KP + + ++ + Sbjct: 61 LTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 227 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IVEDN + R+ ++ GY NG E L R H+PD++++D+ + + G Sbjct: 1 MKTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE ++ + PV+ +TA + D+ + G + Y++KP S++ + ++ ++ Sbjct: 61 LEFLRRFRAAE---HAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 223 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ ++ + +E G+ + NG + + + + PD++I+DI L + G E Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKKDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + IP+I +TA D+ + G + YI KP + IK + Sbjct: 62 VCREIRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 233 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D ++L R ++ GY L +G EAL +A++ PD++++D+ L I G E Sbjct: 5 KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++I+ ++ EIP++ +TA + D + G YISKP S + I+ + Sbjct: 65 VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRR 123 >gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 237 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D E ++L R +E GY L NG E + + + +K D++++D+ L + G+ Sbjct: 7 KTILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDGI 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I K++ E + +P+I +TA + + D + G + YI+KP S+ + I+ + Sbjct: 67 QICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRR 126 Query: 123 A 123 + Sbjct: 127 S 127 >gi|22297889|ref|NP_681136.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294067|dbj|BAC07898.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 121 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED+ ++ +L+ +G+ +G+EA+E +Q PDV+++DI + ++G Sbjct: 1 MTKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QIK D Q IPV+ ++ + D K G +AYI+KP + TIK+ + Sbjct: 61 YEVCRQIKSDPRTQSIPVVMCSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLR 120 >gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D + + + +E GY + +G EAL+ PD+I++D+ L +I Sbjct: 11 MDKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ KQ++ + P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 71 GLEVAKQVRAK---RSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 127 Query: 121 GE 122 Sbjct: 128 RR 129 >gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804] gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii] Length = 232 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L S Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +++++D + +PVI +TA + D+ + G + YI+KP S M IK + Sbjct: 61 GLTLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 227 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E + L + +E G+ + +G +AL++ + + ++II+D+ L I G Sbjct: 5 RILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVIDGWT 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++++ S +IP+I +TA + D+ + G + Y+ KP S + +K + Sbjct: 65 VCKEVRKKS---DIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRR 120 >gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K IK ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 274 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED + + RD + +G+ +G ALELA +PD++I+D L + G+ Sbjct: 32 RRILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRMLPGLDGV 91 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ +PVI VTA + D + G + Y++KP S + +K + Sbjct: 92 EVCRRLRQ---TMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRR 148 Query: 123 A 123 + Sbjct: 149 S 149 >gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942] gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942] Length = 236 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + GY +G EA+E+ + +PD+I++DI L Sbjct: 1 MMDKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 235 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + + GY +G +ALE+A PD++I+D+ L ++ G E Sbjct: 5 RILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLMLPKLDGWE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122 + ++++E+ + IP+I +TA + D + G + Y+ KP SL+ + +K ++ Sbjct: 65 VCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRAR 124 Query: 123 A 123 A Sbjct: 125 A 125 >gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402] gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402] Length = 235 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + KL + +E GY ++ +G ALELA I++DI L + Sbjct: 1 MKEKILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+++E+ + PVI +TA + + + G + YI KP S + +K + Sbjct: 61 GIQVCKRLREE---KSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ +L + G+ + NG EAL++ K D++IMDI + E+ G Sbjct: 1 MARILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + ++P++ +TA + + + G + Y+ KP + +K + Sbjct: 61 WELCRELR---DYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 233 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R ++ GY G EA ++ PD++++D L +S Sbjct: 1 MSARILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + Y+ KP S+ + +K + Sbjct: 61 GIELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 224 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D E + L +E +GY + G EA+ ++ D+I++DI + E G Sbjct: 1 MKKLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI++ S+ +PVI +TA K D + K G + YISKP + I + Sbjct: 61 WEVCRQIRKMSQ---VPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9] gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + SG+ L+ + A L + PD++++D L S Sbjct: 1 MPATILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E ++++ D +E+P+I +TA + + D+ + G + YI+KP S IK + Sbjct: 61 GIEFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium] gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] Length = 229 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 249 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L + G Sbjct: 1 MHRILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA D+ G + Y++KP L + ++ + Sbjct: 61 FTVCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + + ++ GY + +G EAL+ + PD+I++DI L + Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 GMEVCREVRKK---YDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 172 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L R +E Y + NG EA+ + D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 68 VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 >gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium profundum SS9] Length = 1131 Score = 172 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 65/115 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + + GY L +G +AL++ Q +P +I++DI + E+SG E+ Sbjct: 726 LVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEVC 785 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++E+ L E+P+I ++A D + + G Y++KP + + I ++ Sbjct: 786 HILREEYSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHL 840 >gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 235 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EALE + PD+II+D+ L + G Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++++ ++P+I VTA + D+ + G + Y++KP S +K + Sbjct: 61 LEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis] Length = 241 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] Length = 239 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 69/125 (55%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++V+D E + + + +E GY + +G EA++L ++ ++I+D+ L + Sbjct: 7 MKKLFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 66 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG E+ +I+E S +P+I +TA + D+ G + Y++KP S+ + +K Sbjct: 67 LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 123 Query: 119 YIGEA 123 I A Sbjct: 124 LIRRA 128 >gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L R +E Y + NG EA+ + D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 68 VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 >gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 382 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +DN N++L R + GY +G EAL+ + PD++I+DI + ++ Sbjct: 27 MKKKILIADDNPDNVELLRKRLSAQGYQIAAAFDGEEALQAVLKENPDLLILDIMMPKLD 86 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K+ E + +PVI +TA D+ + G + YI+KP + + ++ + Sbjct: 87 GYEVLRRLKKQDEYRNLPVILLTAKKEIPDKLKGLDIGADDYITKPFNPQELLARVRSLM 146 Query: 121 -------GEA 123 A Sbjct: 147 ALREEQERRA 156 >gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032] gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032] gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + GY +G EALE+ + KPD+I++DI L Sbjct: 1 MEKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ +E G+ NG EAL + + PD++++D L +SG+E Sbjct: 7 TVLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWMLPNVSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QIK E + +P+I ++A + + D R + G + Y+ KP S+ M ++ + A Sbjct: 67 VCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRA 126 >gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 236 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + PD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K++++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D +L +K R +E G +G EA+E A+ K D+I++D+ L ++ Sbjct: 1 MSRKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+E +P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GLEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IP++ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 244 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D E ++ R +E G+ + G EALE R PD++++D+ L ++ G Sbjct: 8 RSILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K I+E S PVI +TA + D R + G + YI+KP S + +K + Sbjct: 68 EVLKLIRESS---NTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRR 124 >gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR [Xenorhabdus nematophila ATCC 19061] gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K++++VED ++ ++E +GY A++ + A+ + PD++++D L S Sbjct: 1 MVKRILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K D + IPVI VTA A + D R G + YI+KP S + +K + Sbjct: 61 GIQLIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] Length = 228 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ +L R + GY +G AL + PD++++D+ + + G E Sbjct: 5 KILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPVMDGWE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ P+I +TA D+ + G + YI KP IK + + Sbjct: 65 VCRKIRAKD---NTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRS 121 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 247 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE RQ PD++++D+ + ++ G Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVMMPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 71 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] Length = 342 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + MEAL+L + + D+II+DI + + Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + IP+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 175 GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 231 Query: 121 GE 122 Sbjct: 232 RR 233 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 236 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + KPD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ +P+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 76/123 (61%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D E ++L + +E Y L +G+EA ++A++ KP +I++D+ L I Sbjct: 1 MAKEKILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ K+I+ D E+ EIP+I +TA + + D+ + G + YI+KP S+ + +K Sbjct: 61 SGMEVCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 225 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 62/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED L +E GY L +G LELAR PD+I++D+ L + G Sbjct: 1 MKTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K +K+ + IPVI +TA + D + G + Y+ KP S + +K + Sbjct: 61 MEVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++IVED +L + + GY+ + G+EALE + V+++D+ + E+ Sbjct: 1 MKEIRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++I++ + ++PVI +TA D+ + K G + Y++KP + ++ Sbjct: 61 DGFEVCREIRK---VSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis JLW8] gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L I +G+ A++ +G AL+L R+ PD+I++D L ++ Sbjct: 1 MPANILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++K D+ + IP+I +TA + D+ R + G + Y++KP S IK + Sbjct: 61 GLELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 236 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + + KPD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ +P+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEIRK---TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED + ++ +D + GY L+ NG EAL L +++ ++I+DI + E+ Sbjct: 1 MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ IPVI +TA A + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLL 117 >gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 252 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EISGL 62 +V++V+D E ++ R + G+ +G + A + PD+II+D+ + I GL Sbjct: 18 RVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMPPGIDGL 77 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E+ +EIP++ +TA D + G + Y++KP +E I+ + Sbjct: 78 EVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRR 137 >gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K ++++ED +L R +E +GY + +G+ +EL + KPD++I+D+ L + Sbjct: 1 MMK-ILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPMLD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ P++ +TA + D G + Y+ KP S + +K + Sbjct: 60 GMEVCRRIR---TWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAIL 116 Query: 121 GEA 123 A Sbjct: 117 RRA 119 >gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 230 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED E + R +E GY +G EALE R +PD+I++D+ L E+ Sbjct: 1 MPAHILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVMLPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I++ S +PVI +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GFDVLRAIRQASG---VPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 283 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ ++ ++ SG+ +G+EA+ +A + PD++++D L + GL Sbjct: 31 RRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGL 90 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ +PV+ +TA D G + Y++KP S + ++ + Sbjct: 91 EVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 150 >gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118] gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 236 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EAL+ ++ +PD+I++D+ L +I G Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 235 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EALE + PD+II+D+ L + G Sbjct: 1 MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++++ ++P+I VTA + D+ + G + Y++KP S +K + Sbjct: 61 LEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae TIGR4] gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54] gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae] gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae] gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54] gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570] gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301] gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317] gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368] gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901] Length = 234 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator [Photobacterium sp. SKA34] Length = 1132 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+++ + + +GY +G +A+++ +Q +PD+I++DI + E+SG E+ Sbjct: 721 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQAIDIVQQQRPDLILLDIMMPEMSGYEV 780 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + E+P++ ++A D + + G Y++KP + + I+ Y+ Sbjct: 781 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 836 >gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family [Spirochaeta thermophila DSM 6578] Length = 226 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++L R +E GY + T G +ALE AR PD II+D+ L +SGLE Sbjct: 2 TILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ IP++ +TA + + D + G + YI+KP S I + +K + Sbjct: 62 VCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 >gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 249 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ ++ ++ +GY+ + +G AL A H PD++++D+ L + GLE Sbjct: 16 RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLMLPGMDGLE 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +PVI +TA + D + G + Y++KP S + ++ + + Sbjct: 76 VCRRMRGHGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRS 132 >gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 237 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D E +L + +E Y NG AL+ A + D+I++D+ + + G+ Sbjct: 5 ARILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ + P++ +TA + + + + G + YI KP S + +K + Sbjct: 65 EVCEKIRKQ---KATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 123 A 123 A Sbjct: 122 A 122 >gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxidans DMS010] gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxydans DMS010] Length = 230 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED+ + ++ +G+ +G L+ ++ +PD+I++D L I Sbjct: 1 MATSVLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E ++++ + L IPVI +TA D + G + Y++KP S M I+ + Sbjct: 61 GIEFIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] Length = 233 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 69/122 (56%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++VED ++ +++ +G+ A++ + +AL + PD+I++D L + Sbjct: 1 MSRKILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWMLPGGT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K++K++ + IP+I +TA + + D+ + + G + +++KP S + IK I Sbjct: 61 GVSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|167945734|ref|ZP_02532808.1| sensor histidine kinase with ATPase domain, two fused [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 415 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 78/119 (65%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VEDN +N ++ +L+++ G + L +G AL ++ D+++MD+Q+ + G E Sbjct: 253 KVLLVEDNPINQQVALELLQSFGLLVLVAEDGRAALRRLQESAFDLVLMDVQMPLMDGYE 312 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+QI++ ELQ++PVIA+TA AM GD E+ G Y+SKPI + + T++ ++GE Sbjct: 313 TTRQIRQQPELQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWLGE 371 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE---------LARQHKPDVIIMDI 54 +V++V+DN + + D++ + + N EA E LA+ +++MD Sbjct: 102 RVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMDW 161 Query: 55 QLQEISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 + ++G++ + IK++ L + P +I VTAF + ++ + G +A + KP + S+ Sbjct: 162 HMPPVNGIDAVQHIKQELALVQQPKMILVTAFGREELMQQSQAAGLDAVLLKPANPSLLF 221 Query: 114 ETIKKYIGEA 123 +TI E+ Sbjct: 222 DTIMSVFKES 231 >gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 243 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + GY + +G EALE+ RQ +PD++++D+ + ++ G Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] Length = 234 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R ++ GY G EA ++ PD++++D L +S Sbjct: 1 MSARILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp. subtilis str. 168] gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis] gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis] gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + GY +G EA+E+ + +PD+I++DI L Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 231 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ +E G++ +G EAL A PD++++D+ L ++ Sbjct: 1 MSARILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++E +PVI +TA + D + G + Y++KP S ++ + Sbjct: 61 GLQVCRKLRERWP---VPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 261 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D + + L ++ +G+I L +G E L A + +PD II+D+ L ++ Sbjct: 24 MSKRVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLD 83 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 84 GIEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 141 Query: 121 GE 122 Sbjct: 142 RR 143 >gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp. subtilis str. 168] gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5] gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto BEST195] gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus subtilis subsp. spizizenii str. W23] gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5] Length = 236 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + GY +G EA+E+ + +PD+I++DI L Sbjct: 1 MMDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB [Candidatus Nitrospira defluvii] gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB [Candidatus Nitrospira defluvii] Length = 238 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED + ++L + +E G+ + G E L + PD+II+D+ L E+ GL Sbjct: 9 KKILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + E +P++ +TA A + D + G + Y++KP S + +K + Sbjct: 69 EVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRR 128 >gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 229 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] Length = 232 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D + R +E + Y ++ N +A L KPD+I++D + SG+ Sbjct: 4 RKILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWMMPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +P+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 233 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++V+D E + + + +E Y + +G EA++L ++ +II+D+ L + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG E+ +I+E S +P+I +TA + D+ G + Y++KP S+ + +K Sbjct: 61 LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117 Query: 119 YIGEA 123 I A Sbjct: 118 LIRRA 122 >gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 244 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + R + GY +G EAL A PD++++DIQ+ + GL Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA GD G + Y+ KP L I+ + Sbjct: 73 TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 Query: 123 A 123 + Sbjct: 131 S 131 >gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 238 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E +L + +E Y+ + NG EAL LA +++ DVI++D+ + ++ G+E Sbjct: 6 KILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMPKMDGVE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + PVI +TA + D + + G + YI KP S + +K + + Sbjct: 66 VCTELRK---TKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRS 122 >gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 244 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED + ++ +D + GY L+ NG EAL L +++ ++I+DI + E+ Sbjct: 18 MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 77 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ IPVI +TA A + D + G + Y++KP S I + K+ + Sbjct: 78 GWSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLL 134 >gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas elongata DSM 2581] gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB [Halomonas elongata DSM 2581] Length = 229 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D ++ +E + Y L+ N A + H+PD++++D + SG+ Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWMMPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K + E+P+I +TA + + ++ + G + YI+KP S + +K + Sbjct: 64 ELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D + L E GY + +G +A+++ R+ D+I+MDI + + G Sbjct: 1 MSRILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IKE ++IPVI ++A + D+ + G + Y++KP S M IK I Sbjct: 61 FTACKKIKE---FKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVIN 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ + D +++DI + E+ Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] Length = 238 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + +++VED + L R +E G+ + +G EAL + PD++++D L + Sbjct: 8 MARPTILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPAL 67 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGLE+ +Q++ + +++P+I VTA D R G + YI+KP + M I+ Sbjct: 68 SGLEVCRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRAL 127 Query: 120 IGEA 123 + + Sbjct: 128 LRRS 131 >gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073] gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB [Escherichia coli CFT073] Length = 229 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 244 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D ++L + +GY +G EAL AR+ +PD++++D+ + + Sbjct: 12 MSPHLLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLD 71 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++ E + +PV+ +TA D+ + G + Y++KP SL + ++ + Sbjct: 72 GFEVVRRLR--GEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALL 129 Query: 121 GEA 123 + Sbjct: 130 RRS 132 >gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] Length = 234 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED E L R +E G+ G EA R+ PD++++D + +S Sbjct: 1 MSTRILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMVPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ E + +P+I +TA +GD R G + YI KP S+ + ++ + Sbjct: 61 GIELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 229 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY ++ + AL + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I KQ+K ++ +++IPV+ +TA + D R + G + YI+KP S + +K + Sbjct: 61 GLQIIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] Length = 229 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 65/120 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ R +E G+ NG EAL + + PDVI++D L +SG+E Sbjct: 7 TVLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWMLPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QIK E + +PVI ++A + + D R + G + Y+ KP SL M ++ + A Sbjct: 67 VCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRA 126 >gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D +KL + +E SG+ + +G +ALE+ + +PD II+D+ L ++ G Sbjct: 1 MIKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ K +++ E P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 MDVCKTLRQ--ERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 242 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I++D+ + ++ +GY ++ +GM+ LA Q PD+I++D+ L ++ Sbjct: 1 MKPRILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++++ D Q+IP++ +TA + ++ G + Y++KP L + ++ + Sbjct: 61 GFTICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS [Photobacterium damselae subsp. damselae CIP 102761] Length = 1130 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 65/115 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + + GY L +G +ALEL + HKP +I++DI + E+SG E+ Sbjct: 724 LVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHKPALILLDIMMPEMSGYEVC 783 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+++ E+P++ ++A D + + G Y++KP + IK ++ Sbjct: 784 SQLRQQYTPLELPIMMLSALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHL 838 >gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ + D +++DI + E+ Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 247 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L + G Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D EIPV+ +TA + D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] Length = 230 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY ++ + AL L + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K I Sbjct: 61 GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + + G+ +G EAL +AR+ PD++I+DI + + GLE Sbjct: 73 RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGLE 132 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ E+PV+ +TA D+ + + G + Y+ KP + + + ++ + Sbjct: 133 VLQRLRAAD--PELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRR 189 >gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] Length = 230 Score = 171 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY ++ + AL L + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K I Sbjct: 61 GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 171 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E +G EALELA+ +K D+I++D+ L ++ Sbjct: 1 MSKKVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+E ++P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GLEVCQQIRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris DP4] gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris RCH1] Length = 229 Score = 171 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED+E ++L R +E +G+ + G + LE A++H P ++++D+ L + Sbjct: 1 MAKERILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ +++K + +PVI +TA + D + G + Y+ KP S + I+ Sbjct: 61 SGFDVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LKR 123 >gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 236 Score = 171 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D + + + +E GY +G+EALE + PD+I++DI L + G+ Sbjct: 4 RKILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPLMDGM 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++++ ++P+I +TA + D + G Y++KP S + +K ++ Sbjct: 64 EVCREVRK---TSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLR 119 >gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 244 Score = 171 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + R + GY +G EAL A PD++++DIQ+ + GL Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA GD G + Y+ KP L I+ + Sbjct: 73 TAARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 Query: 123 A 123 + Sbjct: 131 S 131 >gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 240 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ ++ +GY+ + +G EAL A H+PD++++D+ L + GLE Sbjct: 12 RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLMLPGMDGLE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +PVI +TA + D + G + Y++KP S + ++ + + Sbjct: 72 VCRRMRGRGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRS 128 >gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 234 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED E L R +E G+ G EA R+ PD++++D + +S Sbjct: 1 MSTRILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMVPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ E + +PVI +TA +GD R G + YI KP S+ + ++ + Sbjct: 61 GIELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895] gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895] Length = 229 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + Y++KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] Length = 229 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY +G EALE + KPD+I++DI L + Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] Length = 230 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + L + +E GY +G EAL ++ PD+I++D L ++SG+E Sbjct: 5 RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ E + +P+I +TA + D R G + Y+ KP ++S I+ + Sbjct: 65 VCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRR 123 >gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905] gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905] Length = 238 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++++ED L + +E +GY+ +G E LE A + +P++I++D+ L ++ Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQI++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKQIRQ--QRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 250 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 67/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED+ + + R +E +GY ++ +G+ LA Q PD+II+D+ L ++ G Sbjct: 1 MARILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ + EIP++ +TA D+ G + Y++KP + + ++ + Sbjct: 61 LTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter winogradskyi Nb-255] gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E GY G EA ++ PD++++D L +S Sbjct: 1 MGARILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ S+ +++P+I +TA + + R G + Y+ KP S+ + +K + Sbjct: 61 GIELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E G +G EAL++A ++ D+I++DI L ++ Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+E ++P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQHIRE---FSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 236 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + PD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K++++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] Length = 279 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 51 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 111 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170 Query: 121 GE 122 Sbjct: 171 RR 172 >gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family [Marinomonas mediterranea MMB-1] Length = 231 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 70/121 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+I++D ++ +E +GY L+ N E+ H+PD+I++D + SG+ Sbjct: 4 KKVLIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMMPGGSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T+++K+DS EIPVI +TA + + ++ + + G + YI+KP S + +K + Sbjct: 64 ELTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] Length = 240 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED +L ++ +GY ++ + +A+ + PD+I++D L ++ Sbjct: 1 MSAKILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPNMT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ + ++ + + IP+I +TA + D+ + G + Y++KP S + I + Sbjct: 61 GIDFARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 238 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + + GY +G EAL+ + PD+II+D+ L ++ Sbjct: 1 MAKKILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++ P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRK---TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 230 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 71/122 (58%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IV+D E ++L + +E GY +G EAL+ A+ KP +I++D+ L + Sbjct: 1 MNKKVLIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPIMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +I+ED EL++ P+I +TA M+ D+ + G + YI+KP S+ M +K Sbjct: 61 GTKVCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVT 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium sp. ORS278] gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Bradyrhizobium sp. ORS278] Length = 235 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E GY G EA ++ PD++++D L +S Sbjct: 1 MGARILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ SE +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|320160319|ref|YP_004173543.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994172|dbj|BAJ62943.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 407 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ L + + T G+ L+ NG++A+E A H+PD+IIMD+ + E+ Sbjct: 1 MPEKILVVDDDALMRLMVTKTLSTEGFEFLEAENGVQAVEKAIAHQPDLIIMDVNMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++I+ + IP+I VT+ + D+ + G + YI KP + + Sbjct: 61 GYEACQRIRSNPITSAIPIILVTSLSTVEDKIKGFDSGADDYIPKPFDPIELTMRVNVLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8] gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8] Length = 247 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ ++L + GY L+ +G EAL++A D+ I+DI L I G Sbjct: 12 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + + PVI ++A + D+ + G + YI+KP S+ + +K Sbjct: 72 ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 131 >gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI] gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 233 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + ++ GY + +G EALE +PD+I++D+ L +I G Sbjct: 1 MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q++ IP+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVARQVRAK---HNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus pseudintermedius ED99] Length = 234 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++V+D + + L + +E SGY+ ++G EAL+ ++ KPD+I++D+ L + Sbjct: 1 MAQRVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D ++P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKN--QVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046] gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046] Length = 229 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 235 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 69/120 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D E ++L + +E GY T +G AL+ ++ D++++D+ L EI GL Sbjct: 4 KKILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I +QI+ D EL ++P+I +TA + D + G + Y++KP S + +K + Sbjct: 64 DICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRR 123 >gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 229 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++V+D E ++L + GY + T G A+E++R +PD+I++D+ L + Sbjct: 1 MAKERILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ K +K++ E Q IP++ +TA + D + G + Y++KP S I + I+ Sbjct: 61 DGLEVAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 236 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 72/121 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+I++D ++ +E +GY L+ N +A E+ H+PD+I++D + SG+ Sbjct: 9 KKVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMMPGGSGI 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T+++K+D+ EIPVI +TA + + ++ + + G + YI+KP S + +K + Sbjct: 69 ELTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 128 Query: 123 A 123 A Sbjct: 129 A 129 >gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 263 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ +L +E +GY Q +G++ LA Q PD+I++D+ L + Sbjct: 1 MKPRILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++ D IP++ +TA + D+ G + Y++KP + + ++ + Sbjct: 61 GFTVCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED + R +E GY + +G EAL L + KPD++++D L +S Sbjct: 3 MKPLILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +Q++ +E+P+I +TA +GD+ R G + Y++KP SL M I+ + Sbjct: 63 GIEVCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAML 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L R +E Y + NG EA+ + D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 68 VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 >gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601] Length = 247 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L + G Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D EIPV+ +TA + D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter sphaeroides f. sp. denitrificans] Length = 230 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E+ G+ +Q NG EAL L + PDVI++D L +SG+E+ Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q+K + +P+I ++A + + D R + G + Y+ KP S+ M ++ + A Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127 >gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D + +++ + +E +GY ++ +G E L++A++ PD+I++D+ L ++ G Sbjct: 1 MSRILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +++ P++ +TA + D+ + G + Y++KP S+ + +K + Sbjct: 61 FTVLRILRQ---TMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D + ++ SG+ + +G EAL Q KPD++I+DI + + G Sbjct: 4 KTVLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPVLDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +QI++ +P+I +T+ D + G + Y++KP + + +K + Sbjct: 64 EVCQQIRK---YSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRR 120 >gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri] gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 235 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E GY + +G ALE PD+II+D+ L +I Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+++ +P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAKRVRAK---HTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51] gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+E ++ R +E G+ + NG ALE R D+II+D+ + + G Sbjct: 2 RILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIPGLDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++++++ IP+I +TA + D G + YI KP S +K + Sbjct: 62 VCKVLRKETQ---IPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRR 117 >gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 230 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED E + R +E GY +G EAL+ R +PD+I++D+ L E+ Sbjct: 1 MPAHILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I++ S +PVI +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GFDVLRAIRQASG---VPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] Length = 238 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + G+ + +G E L + PD++I+D+ L +I G Sbjct: 1 MKKILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I++ +P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVCREIRK---TSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] Length = 237 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + +E GY + +G +AL++ + +PD++I+D+ L ++ G Sbjct: 4 MKKILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLPKMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I++ S +PVI +TA + D+ + G + Y++KP S + +K + Sbjct: 64 LEVCREIRKQSA---VPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241] gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241] Length = 223 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ + D +++DI + E+ Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 239 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ ++L + GY L+ +G EAL++A D+ I+DI L I G Sbjct: 4 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + + PVI ++A + D+ + G + YI+KP S+ + +K Sbjct: 64 ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRR 123 >gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 273 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++VED + + + + G+ +G EAL+ + PD+I++D+ L Sbjct: 39 MAAKILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTD 98 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI ++++E +P+I VTA + D+ + G + Y++KP S + IK + Sbjct: 99 GIEICRKVREKYR---MPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANL 155 Query: 121 GE 122 Sbjct: 156 RR 157 >gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 238 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D + +L + +E Y + NG +AL LA + D+I++DI + + G+ Sbjct: 5 AKILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ + PV+ +TA + + + + G + YI KP S + +K + Sbjct: 65 EVCQELRK---TKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] Length = 236 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +ET+GYI +G EAL+ + +P++I++D+ L + Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] Length = 234 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 4/124 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++I +D ++ R E G+ ++ +G A+ + KPD++++DI + + Sbjct: 3 MAKQKILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPVL 62 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ KQ+++ S ++P+I VTA D + G + YI+KP + + +K Sbjct: 63 DGIEVCKQVRKMS---DLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAV 119 Query: 120 IGEA 123 + A Sbjct: 120 LRRA 123 >gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 223 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ ++ + +E G+ + T NGM+ + + + PD++I+DI L + G E Sbjct: 2 KILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKKDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + IP+I +TA D+ + G + YI KP + IK + Sbjct: 62 VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K V+I +D ++ + G+ ++ +G EAL + KPD+I++DI + Sbjct: 1 MNKQQTVLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPV 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ KQ+++ + +IP+I +TA D + G + YISKP + + +K Sbjct: 61 LDGLEVCKQVRK---ISDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKA 117 Query: 119 YIGE 122 + Sbjct: 118 VLRR 121 >gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 229 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 233 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+E + R +E +G+ NG E L H+PD++++D+ + I+GLE Sbjct: 7 RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMPGINGLE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K++++ + ++P++ +TA + + + G + Y++KP S + + A Sbjct: 67 VCKRLRQ---VSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRA 123 >gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] Length = 228 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+ IVED L + +E Y + NG E L+ ++ +PD+I++D L ++S Sbjct: 1 MKAKIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI + +K+D + + IP+I +TA + D+ G + Y+ KP S S + I + Sbjct: 61 GIEICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 229 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED + L + +E GY + +G E L + +PD++++D L ++S Sbjct: 1 MQPYILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +PVI +TA + D R G + Y++KP S++ + I+ + Sbjct: 61 GIEVCRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D +L +K R +E G +G EALE AR+ + D++++D+ L ++ Sbjct: 1 MSKKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +QI+E ++P++ +TA + D+ + G + YI+KP ++ IK + Sbjct: 61 GFQVCQQIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 236 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + +++ R +E +GY + ++G ALELAR PD+I++D+ + + G Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I + ++ D + IP+I ++A + + D+ + G + YI+KP S + + + Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 243 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] Length = 234 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED + + + + GY L+ +G L+LA + PD++++D+ L +++ Sbjct: 1 MNKRILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+ E + PVI +TA + D+ + G + YI+KP S+ + +K I Sbjct: 61 GFDVCRSIRA--EGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANI 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|148658022|ref|YP_001278227.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus sp. RS-1] gi|148570132|gb|ABQ92277.1| response regulator receiver modulated diguanylate cyclase [Roseiflexus sp. RS-1] Length = 443 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 68/123 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I +D +L ++ + GY + T+NG + + A++ PD++I+D+ + ++ Sbjct: 1 MTKRILIADDEPAVRQLLELVLRSQGYEVVATQNGDQLVRTAQEWIPDLVIIDLMMPQMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +Q++ D+ +P++ +TA + D G + Y++KP ++ + I+ ++ Sbjct: 61 GYEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYVTKPFNIPELLARIRAHL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L] gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W] gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L] gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W] gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 228 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++IV+D+E ++ + +E+SGY +G A ++KPD++++D+ L + Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVMLPHMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K I+++SE PVI +TA D+ + G + YI KP + IK + Sbjct: 64 GIDVLKWIRKESET---PVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis] Length = 236 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L S Sbjct: 1 MSTSILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLPGSS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++++ D + IPVI +TA + D+ + G + YI+KP S + IK + Sbjct: 61 GINLARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 223 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ ++ + +E G+ + NGM+ + + + PD++I+DI L + G + Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKKDGYD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + IP+I +TA D+ + G + YI KP + IK + Sbjct: 62 VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IP++ +TA D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 243 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ +PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 231 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 1/123 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V++V+D E ++L R + GY G EA+++ + +PD++++D+ L I Sbjct: 1 MSGKHVLVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + +K D E IP++ +TA + D + G + Y++KP S I IK Sbjct: 61 DGFEVARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAI 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] Length = 230 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E+ G+ +Q NG EAL L + PDVI++D L +SG+E+ Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q+K + +P+I ++A + + D R + G + Y+ KP S+ M ++ + A Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127 >gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2] gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2] Length = 235 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + ++ G+ + +G EA+++A + +PD++++DI L Sbjct: 1 MSKTILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREIRKKYDF---PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338] gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338] Length = 236 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EA+ + PD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K++++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 229 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 243 Score = 170 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + GY + +G EALE+ R+ PD++++D+ + ++ G Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDGYG 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 68 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 >gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597] gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564] gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564] gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597] Length = 235 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta] gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta] Length = 254 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D K+ + GY + +G EAL L Q PDV+I+DI + ++ G Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++DS ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 76 VCQEIRKDS---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131 >gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 239 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ ++L + GY L+ +G EAL++A D+ I+DI L I G Sbjct: 4 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + + PVI ++A + D+ + G + YI+KP S+ + +K Sbjct: 64 ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123 >gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] Length = 229 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D ++ ++E +G+ A++ + A+ + PD++++D L S Sbjct: 1 MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+ K++ ++IP+I +TA + D+ R + G + Y++KP S M IK I Sbjct: 61 GIQIAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6] gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6] Length = 235 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I++D + +++ + +E +GY ++ +G E L+LA++ PD+I++D+ L ++ Sbjct: 1 MSSRILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + +++ P++ +TA + D+ + G + Y++KP S+ + +K + Sbjct: 61 GFTVLRILRQ---TMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] Length = 236 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ ++ + A + R+ PD++++D L S Sbjct: 1 MPANILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGAS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E ++++ D ++IP+I +TA + D+ + G + Y++KP S + IK + Sbjct: 61 GVEFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 233 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+E + R +ET+G+ +G AL + PD++++D+ + ++GLE Sbjct: 7 RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVMMPGLNGLE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++ ++P++ +TA + + + G + Y++KP S + + A Sbjct: 67 VCRRLRQ---TSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRA 123 >gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 223 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D ++L + GY ++ +G+ A++ HK D++++DI + E+ G Sbjct: 1 MYTILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E K+I+E ++P+I VTA D + G + YI+KP + + I+ + Sbjct: 61 WETCKRIRE---FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT] gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 228 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++IV+D+E ++ + +E+SGY +G A ++KPD++++D+ L + Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K I+++ E PVI +TA D+ + G + YI KP + IK + Sbjct: 64 GIDVLKWIRKE---CETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 227 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + K+ + +E + +G EAL + PD+II+D+ L EIS Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++D ++ P++ +TA + D+ G + Y+ KP SL + IK + Sbjct: 61 GEEVCQKIRQD---KQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044] gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae] gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] Length = 229 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa] gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa] Length = 239 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D ++ + GY + +G EAL + + P+++++D+ + ++ G Sbjct: 6 KKILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 66 GVCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122 >gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 245 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA D+ G + Y++KP L + ++ + Sbjct: 61 FTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 235 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01] gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222] gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01] gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222] gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] Length = 229 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 229 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|75761471|ref|ZP_00741436.1| Two-component response regulator yycF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491032|gb|EAO54283.1| Two-component response regulator yycF [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 173 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + +E G+ + +G EA+E A + +PD++++DI L Sbjct: 1 MMGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I++ SE +P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGLEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 248 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I+ED E ++ + +E GY NGME +L H+PD+I++D+ + + Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMSKKD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + D G + Y++KP S + ++ + Sbjct: 69 GWELCEEIRQQS---NVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIIL 125 Query: 121 GE 122 Sbjct: 126 KR 127 >gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima] Length = 239 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ ++L + GY L+ +G EAL++A D+ I+DI L I G Sbjct: 4 KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + + PVI ++A + D+ + G + YI+KP S+ + +K Sbjct: 64 ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123 >gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ +L + G+ + NG EAL++ K D++IMDI + E+ G Sbjct: 1 MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + ++P++ +TA + + + G + Y+ KP + +K + Sbjct: 61 WELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|163785470|ref|ZP_02180068.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1] gi|159879260|gb|EDP73166.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1] Length = 311 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 69/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E N LF+ +++ GY + NG E ++ A + KPDVI+MD+ + + G Sbjct: 8 KILIVDDDERNRLLFKVILKKEGYETTEAENGEEGIKKALEEKPDVILMDVMMPVMDGFT 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK++K D + IPVI +TA + ++ + + G +++KP+ + IK ++ Sbjct: 68 ATKKLKSDDRTKHIPVIILTALNEREEKLKGIESGANDFLTKPVDTKELLLRIKNHL 124 >gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 246 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 252 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL +PD+II+D+ L EI G Sbjct: 18 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 78 LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 134 Query: 122 E 122 Sbjct: 135 R 135 >gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 234 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + + + + GY +G EALE + +PD+I++D+ L ++ G Sbjct: 1 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330] gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO] gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330] gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + + + + GY +G EALE + +PD+I++D+ L ++ G Sbjct: 1 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 235 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|159037489|ref|YP_001536742.1| response regulator receiver modulated diguanylate cyclase [Salinispora arenicola CNS-205] gi|157916324|gb|ABV97751.1| response regulator receiver modulated diguanylate cyclase [Salinispora arenicola CNS-205] Length = 326 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+E + + GY + R+G EALE+ QH+PD+ ++D+ + + GLE+ Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHARDGQEALEVIAQHRPDLAVVDLMMPRVDGLEL 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ D +PVI +TA M D+ G + Y+ KP + + + + Sbjct: 71 TRRLRADPMTAALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128 >gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 221 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED+ K + +E GY G +AL+ + PDV+++D+ L E++ Sbjct: 1 MKAKVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ED E+PVI +TA D R K G + YI KP + + ++ + Sbjct: 61 GFTVLERIREDFST-ELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 245 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R +PD++++D+ + ++ G Sbjct: 10 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 125 >gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] Length = 229 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++V+D +L +K R +E GY +G EAL+LA+++ D+I++D+ L + Sbjct: 1 MSRRVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLPKYD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+E ++P+I +TA D+ G + YI+KP ++ IK + Sbjct: 61 GFEVCQQIRE---YSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 226 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++L R +E GY + T G +ALE AR PD II+D+ L +SGLE Sbjct: 2 TILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ IP++ +TA + + D + G + YI+KP S I + +K + Sbjct: 62 VCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 >gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 236 Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +ET+GYI +G EAL+ +P++I++D+ L + Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDEQPELIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] Length = 232 Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L S Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D + +PVI +TA + D+ + G + YI+KP S M IK + Sbjct: 61 GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15] Length = 244 Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + + + + GY +G EALE + +PD+I++D+ L ++ G Sbjct: 11 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 71 LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12] gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12] gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 244 Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + + + + GY +G EALE + +PD+I++D+ L ++ G Sbjct: 11 MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 71 LEVAREVRK---TYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 239 Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 68/118 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + +L R +E+ GY + +G EAL +AR +P +II+D+ L +I GLE+ Sbjct: 8 ILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLMLPKIDGLEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K D ++IP+I +TA + D+ + G + YI+KP S + ++ I Sbjct: 68 CRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRR 125 >gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 170 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++++ED L + +E +GY+ +G E LE A +P++I++D+ L ++ Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQI++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKQIRQ--QRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] Length = 236 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +ET+GYI +G EAL+ ++ KP++I++D+ L + Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 233 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K K+++V+D E + + + +E GY + +G EA++L ++ ++I+D+ L + Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G E+ +I+E +P+I +TA + D+ G + Y++KP S+ + +K Sbjct: 61 IFGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117 Query: 119 YIGEA 123 I A Sbjct: 118 LIRRA 122 >gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 236 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED KL + +E G+ R+G+ A++ + +PDVII+D+ L + GLE+ Sbjct: 3 ILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLMLPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + + ++ + + Sbjct: 63 CARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRRS 121 >gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 242 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++++ED L + +E +GY+ +G E LE A +P++I++D+ L ++ Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQI++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKQIRQ--QRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 232 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + + + + G+ L+ +G +A+ELA KPD+I++DI L ++ Sbjct: 1 MSAKILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++E P+I +TA + D+ + G + YI+KP S M +K + Sbjct: 61 GFTVCRKLRESI---STPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 246 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + GY + +G EALE+ + PD++++D+ + ++ G Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDGYG 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 68 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 >gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 233 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + E GY+ NG EA+ LA+++ D+I++DI + +++ Sbjct: 1 MEEKILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++I++ ++PVI +TA + D+ + G + Y+ KP S+ + +K + Sbjct: 61 GFEALREIRK---TSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 246 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IP++ +TA D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 234 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + L + +ET+GY + +G EALE +PD+II+D+ L + Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K ++ + L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L R +E Y+ + NG EA+ + D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 68 VCRQVREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 >gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D+ +L +E +G+ L +G AL LAR +PD++++D+ L +I Sbjct: 1 MPQRILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++T+ I+ D + +P+I +TA D + G + YI+KP + + ++ + Sbjct: 61 GADLTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580] gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580] gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] Length = 235 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + ++ GY +G EAL++ PD+I++DI L Sbjct: 1 MEKKILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB [Rhodopseudomonas palustris CGA009] gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E+ GY G +A ++ PD++++D L +S Sbjct: 1 MAARILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4] gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4] Length = 231 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D L R + GY ++ NG EAL+ + H +II+D+ + E+ Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++++ +P++ +TA D+ + G + Y++KP + + + Sbjct: 61 GWEVCEEIRKENLA--LPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] Length = 235 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ ++ + EA + R PD++++D L ++ Sbjct: 1 MPANILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWMLPGMT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E ++++ D +EIP+I +TA + D+ + G + YI+KP S I + Sbjct: 61 GIEFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54] Length = 232 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L S Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D + +PVI +TA + D+ + G + YI+KP S M IK + Sbjct: 61 GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] Length = 273 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E E A++ PDV+I D+ + G Sbjct: 47 RLLLVDDEPGLRTAVKAYLEDEGFAVTTANDGEEGWEKAQELLPDVVISDVMMPCCDGYG 106 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D L PVI +TA M D + GC+ YI KP + ++ + Sbjct: 107 LLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDDYIPKPFDPDELVARVRNAVRR 165 >gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 170 bits (432), Expect = 6e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ ++ + +E G+ + NGM+ + + + P+++I+DI L + G E Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKKDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + IP+I +TA D+ + G + YI KP + IK + Sbjct: 62 VCRELRK---ISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117 >gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125] gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125] Length = 238 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D + L + +E Y + +G EALE A DVI++D+ + E+ G+ Sbjct: 5 AKILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ + P+I +TA + + + + G + YI KP S + +K + Sbjct: 65 EVCQKLRKQ---KATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 233 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++V+D + + + +E GY + +G EA++L ++ ++I+D+ L + Sbjct: 1 MKKLFKILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG E+ +I+E S +P+I +TA + ++ G + Y++KP S+ + +K Sbjct: 61 LSGEEVCSKIRESS---NVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKA 117 Query: 119 YIGEA 123 I A Sbjct: 118 LIRRA 122 >gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] Length = 594 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 67/117 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+DN +N+K+ ++ + + + +NG A+ + KPD+I++DI + + G E Sbjct: 7 KVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKPDIILLDIMMPGMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + E ++IPVI +TA D+ + K G YI+KP+ + + + ++ Sbjct: 67 TCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQMEEVLARVNTHL 123 >gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + GY +G EAL+ + PD+I++D+ L ++ Sbjct: 1 MAKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q+++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVARQVRKS---HDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus] gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 237 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I+ED E ++ + +E Y NG E EL H+PD+II+D+ + + + Sbjct: 1 MKKRILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQKN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA + + G + Y++KP S + I+ Sbjct: 61 GWELCEEIRQKS---NVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R +PD++++D+ + ++ G Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 71 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025] gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans] gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025] Length = 235 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EAL + PD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEENPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+++++S +P+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEVRKNS---HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 228 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++IVED + +L +E GY +Q +G E LELAR KPD+I++D+ L ++ G Sbjct: 5 SATILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLMLPKMDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ DS IP+I +TA D + G + Y+ KP ++ + I+ + Sbjct: 65 LAVCRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 247 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL+ R PD++++D+ + ++ G Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVMMPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 71 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ +L + G+ + NG EAL++ K D++IMDI + E+ G Sbjct: 3 MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + ++P++ +TA + + + G + Y+ KP + +K + Sbjct: 63 WELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLK 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 238 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E GY + +G AL A ++I+D+ L + G+E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ P++ +TA + + + + G + Y+ KP S + +K + + Sbjct: 67 VCTRLRQ---VKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123 >gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 16-3] gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] Length = 229 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 242 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ +PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D++ +L + + +G+ L G E + QH PD+II+DI + Sbjct: 3 MSKQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHSPDLIILDIMMPGED 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QI+ DS+ +P+I +TA + + D + G + YI+KP S IK + Sbjct: 63 GFTLCQQIRRDSQ---VPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALL 119 Query: 121 GEA 123 A Sbjct: 120 RRA 122 >gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 290 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ + +G+ + +G+ AL +A PD++++D+ L I G+E Sbjct: 54 RVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLMLPGIDGIE 113 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + +PVI +TA + D + G + Y++KP S ++ + A Sbjct: 114 VCRRLREQ---RPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRA 170 >gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 243 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 230 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E G +G EAL++A ++ D++++DI L ++ Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+E +P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 238 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D E +L R +E GY + +G AL+ A +I++D+ L + G+E Sbjct: 7 RILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + PVI +TA + + + + G + Y+ KP S + +K + + Sbjct: 67 VCTRLRQ---TKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123 >gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 233 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++V+D E + + + +E Y + +G EA++L ++ +II+D+ L + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG E+ +I+E S +P+I +TA + D+ G + Y++KP S+ + +K Sbjct: 61 LSGEEVCSKIRESS---NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKA 117 Query: 119 YIGEA 123 I A Sbjct: 118 LIRRA 122 >gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 242 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] Length = 229 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ AL L + PD++++D L S Sbjct: 1 MPANILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+++ D +++P+I +TA + + D+ + G + YI+KP S + IK + Sbjct: 61 GIDIAKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] Length = 230 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E L RD +E SG+ +G L A + + D+II+D+ L + Sbjct: 1 MSKRILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++++ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 GFEICREVRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 SR 119 >gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L S Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D + +PVI +TA + D+ + G + YI+KP S M IK + Sbjct: 61 GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13] Length = 227 Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D ++ ++ Y L NG EAL++ H+ D+II+D+ + ++ G Sbjct: 7 VLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPDMDGFTA 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I+E +P++ +TA + + D+ R K G + Y+ KP S + ++ + + Sbjct: 67 CKKIREKYM---MPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRS 122 >gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] Length = 229 Score = 170 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+M+V+D++ +L R +E GY + +G EA+EL + P++I++DI L ++ G + Sbjct: 5 KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQLDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S+ +P+I +TA D+ + G + YI KP + IK + Sbjct: 65 VCREIRKKSQ---VPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRR 120 >gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4] Length = 236 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY +G EA+++A + +PD+I++DI L + Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCRELRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 236 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +E G+ +G EALE ++ KPD++++DI L Sbjct: 1 MDKHILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GMEVCREVRKQ---YDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 233 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + + +E GY + +G A+ELA KP++I++DI L Sbjct: 1 MSQKILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ Q IPVI +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GNEVLREVRK---TQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus COL] gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus JH1] gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719] gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299] gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115] gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300] gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 132] gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819] gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MR1] gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus COL] gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719] gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299] gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115] gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300] gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus TW20] gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 04-02981] gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819] gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus T0131] gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21172] gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21189] gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21193] Length = 234 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + L + +ET+GY + +G EALE +PD+II+D+ L + Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K ++ + L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii ATCC 27126] Length = 229 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++VED ++ + ++E SG+ ++ + A E + PD+I++D L S Sbjct: 1 MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKICEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K+ ++IPVI +TA + D+ R G + Y++KP S + IK + Sbjct: 61 GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42] gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42] gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens LL3] Length = 240 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L R +E Y+ + NG EA+++ D++++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 68 VCRQLREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 >gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143] gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143] Length = 235 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY + NG EA+EL +PD+II+D+ L EI G Sbjct: 1 MKKILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Yersinia enterocolitica subsp. palearctica Y11] Length = 279 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 51 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 111 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170 Query: 121 GE 122 Sbjct: 171 RR 172 >gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 247 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L + G Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I ++++ D EIPV+ +TA + G + Y++KP + + ++ + Sbjct: 61 FTICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|171911993|ref|ZP_02927463.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 235 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K ++I +D E +L + +GY ++ +G++ L R+ KPD I++D+ + Sbjct: 1 MSDKSLILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRRRKPDAIVLDVMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + ++++ED + IPVI +TA D + G + Y+SKP S + ++ Sbjct: 61 RDGFGVCQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQA 120 Query: 119 YIGEA 123 + A Sbjct: 121 LLRRA 125 >gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 236 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D++ + L + +E GY Q +G EALE ++ PD+++ D+ + E+ G Sbjct: 1 MKKILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNPPDLVVSDVLMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE ++++ + +P I +++ A D G + Y++KP++ I+ + Sbjct: 61 LEFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEALLE 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 246 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IP++ +TA D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 243 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL++ + PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 74/119 (62%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V++ EDNE+N+ + + ++ GY RNG EAL++A + +PD+IIMDIQ+ E+ G Sbjct: 1227 SARVLVAEDNEMNLMVLSEYLQAYGYEVCVARNGREALQVAAEWRPDLIIMDIQMPELDG 1286 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE +Q++ + P+IAVTA AM GD E+ G Y++KPISL I++ + Sbjct: 1287 LEAIRQLRAQAAYATTPIIAVTALAMPGDREQCLLAGATDYLTKPISLRRLARHIERLL 1345 Score = 91.3 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+E + + + + + G A+E +PD+I++ +++ + SG EI Sbjct: 1100 LIIESSAVVAEQLARYLAEQNIQPVVWLYGNGAVEQVAAMRPDLIVLSVEIPDRSGWEIL 1159 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ D EL+ IPVI V+ ER G AY+ KPI+ ++ + + + Sbjct: 1160 ADLQRDPELRRIPVIVVSVVDEP---ERGFTAGAAAYLVKPINRAMLQQALSQI 1210 >gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 247 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED + + RD + +G+ +G AL LA + PD++++D L + G+ Sbjct: 16 RRILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRMLPGLDGV 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ +PVI +TA + D + G + YI+KP S + ++ + Sbjct: 76 EVCRRLRQ---TMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRR 132 Query: 123 A 123 + Sbjct: 133 S 133 >gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 239 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEI 59 M ++IV+DN ++L D++E G+ +G +AL L Q +P++I++DI + + Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG E+ QI+ + ++P++ ++A D+ + G + YI+KP + I+ + Sbjct: 61 SGYELCSQIRREW---DLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAH 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family [Halothiobacillus neapolitanus c2] Length = 230 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVED + ++ + +GY ++ + EA E PD++++D L SG+ Sbjct: 4 KTILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQLSHKLPDLVLLDWMLPGASGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +++K D +++P++ +TA + D+ + G + YI+KP S M IK + Sbjct: 64 EFARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens TA208] Length = 235 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + GY +G EA+E+ + +PD+I++DI L Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 243 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE+ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112] gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112] gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 241 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E GY + +G ALE PD+II+D+ L +I Sbjct: 7 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+++ +P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 67 GLEVAKRVRAK---HTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42] gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42] gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens LL3] Length = 236 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ KK+++V+D + + + GY +G EA+E+ + +PD+I++DI L Sbjct: 1 MMDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED133] gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus JKD6159] gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O11] gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O46] Length = 234 Score = 169 bits (431), Expect = 8e-41, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + L + +ET+GY + +G EALE +PD+II+D+ L + Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K ++ + L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51] gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D E L R +E GY + NG EALE ++ ++I+D+ + EI G ++ Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++E S +IP+I +TA + D + G + Y+ KP S + +K + + Sbjct: 64 CRDVRERS---DIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRS 119 >gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D E L R +E GY + NG EALE ++ ++I+D+ + EI G ++ Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++E S +IP+I +TA + D + G + Y+ KP S + +K + + Sbjct: 64 CRDVRERS---DIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRS 119 >gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1152 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+++ + + + Y +G +AL+L + PD+I++DI + ++G E+ Sbjct: 719 ILVVDDEPVNLQVLVNQLHVARYRVRIANSGQQALDLVEEETPDLILLDIMMPHMTGYEV 778 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK--YIGE 122 ++++ ++PVI +TA + D + + G Y++KP S I + ++ +G Sbjct: 779 CQRLRRTYNAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSRDILLARVRTQLQLGR 838 Query: 123 A 123 A Sbjct: 839 A 839 >gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 230 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E L +D +E SG+ +G L+ + + D+II+D+ L + Sbjct: 1 MSKRILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +QI+ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 GFEICRQIRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 AR 119 >gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 235 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY +G EAL+ + PD+II+D+ L +I G Sbjct: 1 MKKILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---THDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] Length = 234 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E +GY G EA ++ PD++I+D L +S Sbjct: 1 MGARILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +E+P+I +TA + + R G + Y+ KP S+ + +K + Sbjct: 61 GIELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D ++ + GY + +G+EALE KPD+I++D+ + ++GL+ Sbjct: 6 KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNGLQ 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E + +P+I +TA D + + G + Y+ KP S I+ + Sbjct: 66 VCQTLRESTG---VPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRR 121 >gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 248 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D L R + G+ + NG EALE+A H D+I++D+ L ++ G ++ Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I+E + ++ +TA + D+ G + Y++KP + + I + Sbjct: 76 CKKIREKD---HVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRS 131 >gi|206891156|ref|YP_002249147.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743094|gb|ACI22151.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 356 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+DN ++L R ++ GY + +G EAL+ + PD+II+D+ + ++ G Sbjct: 6 QTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVYEVYPDLIILDVMMPKMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D + IP+I +TA + + + G + Y+ KP ++ I Sbjct: 66 EVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPFDYRELSARVRSLITR 125 >gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65] gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65] Length = 232 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D ++ +E +GY ++ N +A L P++I++D L SGL Sbjct: 6 KKILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLPGTSGL 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +++K D E+P+I +TA + ++ + G + YI+KP S + +K + Sbjct: 66 EFARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRR 125 >gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] Length = 229 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 238 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E GY + +G AL A ++I+D+ L + G+E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ P++ +TA + + + + G + Y+ KP S + +K + + Sbjct: 67 VCTRLRQ---VKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123 >gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 235 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E GY + +G ALE PD+II+D+ L +I Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+++ +P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAKRVRAK---HTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri] Length = 229 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY L+ N +A L KPD+I++D L SG+ Sbjct: 4 KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D + P+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 229 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D ++ ++E +G+ A++ + A+ + PD++++D L S Sbjct: 1 MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+ K++ ++IP+I +TA + D+ R + G + Y++KP S M IK I Sbjct: 61 GIQIAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + GY +G EALE + PD+I++D+ L ++ GL Sbjct: 5 KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 65 EVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 121 >gi|125974309|ref|YP_001038219.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|256003472|ref|ZP_05428462.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281418364|ref|ZP_06249384.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum JW20] gi|125714534|gb|ABN53026.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum ATCC 27405] gi|255992496|gb|EEU02588.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 2360] gi|281409766|gb|EFB40024.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum JW20] gi|316941457|gb|ADU75491.1| response regulator receiver modulated diguanylate cyclase [Clostridium thermocellum DSM 1313] Length = 310 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++++D E KL D++ GY + NG + +E+ R KPD++++D+ + ++ G Sbjct: 4 KKILVIDDTEFMTKLISDVLMNEGYEVVTASNGRQGIEMVRIEKPDLVLLDVVMPDMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ED +P+I +TA + D+ + G + YI+KP + + ++ + Sbjct: 64 EVCRILREDEGNNLMPIIMLTAQDNEDDKLTGLELGADDYITKPFNTRELVSRVRNTLRR 123 >gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IV+D E + L + ++ +G+ + +G A +LA D+I++D+ L E+ Sbjct: 1 MTQRILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K +++ P++ +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 GLEVCKSLRQLKV--STPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 229 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+K K+++V+D ++L + +E +G+ + +G EAL+ A KPD+II+D+ L + Sbjct: 1 MIKLPKILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E+ + ++ +P++ +TA + D + G + Y++KP S + ++ Sbjct: 61 VDGFEVCRSLRARG---SMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRA 117 Query: 119 YIGE 122 + Sbjct: 118 ILRR 121 >gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] Length = 229 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 249 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 66/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ +L +E +GY + +G++ LA Q +PD++++D+ L ++ G Sbjct: 1 MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ + +IP++ +TA D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus CGS00] Length = 233 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + L + +ET+GY + +G EALE +PD+II+D+ L + Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K ++ + L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|91203277|emb|CAJ72916.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 238 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 68/120 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D N+KL R ++ Y ++ +G EAL AR PD+I++DI + +I+G Sbjct: 1 MAKILVADDITQNVKLLRVILTAFKYEVIEAYDGEEALNKARTENPDLILLDIMMPKITG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ D + IP+I +TA D + + G + +ISKP + + + +K + Sbjct: 61 YEVCKKLRADEATKNIPIIMITALHEMDDRIKGIEAGADDFISKPFNKTELLARVKSLLR 120 >gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica] Length = 229 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY ++ + AL + PD++++D + S Sbjct: 1 MTRRILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I KQ+K D+ +++IPV+ +TA + D R + G + YI+KP S + +K + Sbjct: 61 GLQIIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + +L ++ G+ +G EA+ L + +PDV+++D L +IS Sbjct: 1 MQPHVLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + D R G + YI KP + ++ + Sbjct: 61 GIEVCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806] Length = 246 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R +PD++++D+ + ++ G Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 71 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126 >gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 249 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D+ ++ ++ +GY+ + +G AL A H PD++++D+ L + GL Sbjct: 21 ARVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLPGMDGL 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 81 EVCRRMRGRGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 137 >gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] Length = 247 Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ +L + + GY +G E + ++ ++I++DI L GL Sbjct: 9 KKILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ +++ P+I +TA + D + G + YI KP + + I + Sbjct: 69 SICRRLRATNDM--TPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRR 126 >gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++++D+ +L R +E G+ + NG +ALE+ R P+++I+DI L G + Sbjct: 6 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + IPVI ++A D+ + G + Y+ KP + +K + Sbjct: 66 VCREIRK---ISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 121 >gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] Length = 229 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321] gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321] Length = 235 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] Length = 229 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D +L +K R +E G +G EALE+ + D+I++D+ L +++ Sbjct: 1 MARKILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+E ++P+I +TA D+ + G + Y++KP ++ IK + Sbjct: 61 GFEVCQQIRE---FSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 230 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +L + GY +G++AL + R+ KP ++I+D+ L + G E Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+ +S +P++ +TA + + D+ + G + Y+SKP + + ++ + + Sbjct: 65 LCRLIRAES---SVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRS 121 >gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] Length = 241 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED + +E GY +G ALE +H D+II+D+ L ++SG Sbjct: 6 KRILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLMLPKLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E +P+I +TA D + G + Y+ KP S + ++ + Sbjct: 66 RVCRAVRE---TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264] gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 242 Score = 169 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ +PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1] gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1] Length = 238 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + KL R +E Y+ + +G ALELA ++ D I++D+ + + G+E Sbjct: 6 KVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPGMDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K++++ + PVI +TA + + + + G + YI KP S + +K + + Sbjct: 66 VCKELRQK---KSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRS 122 >gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 239 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D ++L + +E GY +G ALE+ + PD+I++DI L ++ GL Sbjct: 4 AKILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K+ SE + IP+I +TA + D + G + YI KP S + +K + Sbjct: 64 EVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLR 122 >gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 234 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R ++ GY G +A ++ PD++++D L +S Sbjct: 1 MSARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L + SG+ G EAL+ +PD++++D+ L ++ G + Sbjct: 18 LVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTVV 77 Query: 66 KQIKEDSELQ----EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++++ ++ +PV+ +TA GD+ + G + Y++KP SL + I+ + Sbjct: 78 RRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAILR 137 Query: 122 EA 123 A Sbjct: 138 RA 139 >gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] Length = 240 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED + + +E GY +G ALE +H D+II+D+ L ++SG Sbjct: 6 KRILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E +P+I +TA D + G + Y+ KP S + ++ + Sbjct: 66 RVCRAVRE---TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032] gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032] Length = 240 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L + +E Y + NG EA++ Q D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + QI+ + + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 68 VCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRS 124 >gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 331 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D +L R+ ++ SGYI + +G AL D++I+D+ + + G Sbjct: 104 MAKILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMDG 163 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ PVI +TA + D+ + G + Y+ KP S + +K + Sbjct: 164 MTCLREMRA--RHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLN 221 Query: 122 E 122 Sbjct: 222 R 222 >gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300] gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300] Length = 235 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D E +L + +E ++ + NG +A+E+A D+I++D+ L + G Sbjct: 4 MARILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPGMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E + P+I +TA + + + G + Y+ KP S M +K + Sbjct: 64 IEVCQRVRE---FKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144] gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144] gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus epidermidis FRI909] gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU144] gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU045] gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU028] Length = 236 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + L + +ET+GYI +G EAL+ +P++I++D+ L + Sbjct: 1 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 243 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL++ + PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 236 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY + +G +AL+ + KPD+I++DI L + Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 301 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L + ++++ G+ NG E LE KPD+I++D+ + + G Sbjct: 1 MANILVIDDSRLIAHVAKNMLTARGHEVTVATNGEEGLEAVATIKPDLILLDLIMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK +IPVI +T+ A D+ R + G Y++KP + + ++ Sbjct: 61 YAVCEKIKGSPATADIPVIMLTSKAETADKVRGLEAGASDYVTKPFEEGELVARVNTHLR 120 >gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis CS] Length = 232 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L R PD+I++D L S Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGAS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++++ + +PVI +TA + D+ + G + YI+KP S M IK + Sbjct: 61 GLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037] gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037] Length = 235 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC 7002] gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC 7002] Length = 242 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + GY + +G EAL + PD++++D+ + ++ G Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 242 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 233 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + ++ GY + +G EAL + KPD+I++D+ L +I G Sbjct: 1 MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q++ IP+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVARQVRAK---HNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] Length = 240 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L + +E Y + NG EA++ Q D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + QI+ + + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 68 VCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRS 124 >gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 226 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 58/122 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + +E SG+ N ALE H PDVII DI + ++ Sbjct: 1 MTAKLLLVDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETHVPDVIITDIMMPQMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++ L IPVI +TA M D + GC+AY++KP + IK + Sbjct: 61 GYAFLETVRQQPHLSHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii str. 'Deep ecotype'] gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii str. 'Deep ecotype'] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++VED ++ + ++E SG+ ++ + A E + PD+I++D L S Sbjct: 1 MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K+ ++IPVI +TA + D+ R G + Y++KP S + IK + Sbjct: 61 GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 238 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + L + ++ +G+ +G E A + KPD+I++D+ L ++ Sbjct: 1 MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K++++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKKLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED +L + +G++AL+ + EA + R + PD+I++D L S Sbjct: 1 MSAKILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPSTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + KQ++ ++ +++P+I +TA + D+ + G + YI+KP S M I+ + Sbjct: 61 GVVLAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49] Length = 239 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + GY + NG E +E A++ KP +II+D+ + Sbjct: 13 MKKKDIKILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMP 72 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E ++I+ EL E + +TA + G + YI+KPI I + +K Sbjct: 73 EMDGIEACEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVK 132 Query: 118 KYIGE 122 + Sbjct: 133 ALLRR 137 >gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K KV++V+D +L ++ GY + NG EAL + D +I+DI + E+ Sbjct: 1 MNKYKVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + K+I++ +IP+I +TA + + + G + Y+ KP S + ++ Sbjct: 61 DGIAVCKEIRK---TSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 235 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D L R +E G+ + +G EALE R +PD++++DI L I G Sbjct: 2 RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGWA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +S ++PVI +TA D + G + Y+ KP + + I+ + Sbjct: 62 VCRILRRES---DVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117 >gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 238 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + L + ++ +G+ +G E A + KPD+I++D+ L ++ Sbjct: 1 MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K++++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKKLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D+ +L R +E GY +G EAL PD+I++DI + ++ G + Sbjct: 5 KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIMMPKLDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ S + P+I +TA D+ + G + Y+ KP + +K + A Sbjct: 65 VCREIRKKS---DCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRRA 121 >gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY L+ N +A L KPD+I++D L SG+ Sbjct: 4 KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D + P+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E G +G EAL++A ++ D++++DI L ++ Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+E +P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 223 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 69/122 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED++ +L ++ GY ++G+EA EL + K D+I++D+ L ++G Sbjct: 1 MARVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++++ ++ P+I +TA + + + G + Y++KP S+ + I+ + Sbjct: 61 LDLCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 242 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EALE R+ +PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1361 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 71/119 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ V+D+ N+ + +E +G + NG++ALE+ +QH D+I+MDI + E++G E Sbjct: 1241 TILAVDDDPRNLFVLTASLEQNGAEVHKALNGLKALEILKQHSVDLILMDIMMPEMNGYE 1300 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ + EIP+IA+TA A+K D+++ G Y+SKP+ I + ++ +I Sbjct: 1301 AIHEIRANPSYCEIPIIALTAKALKEDKQKCLDAGANDYLSKPVDYEILINMVQTWIKR 1359 Score = 102 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ L ++ + + G L +G E L +A+ H P II+D+ L ++ G E Sbjct: 977 KILVIDDDLLFVENISYINQAQGLDTLSAHDGREGLRVAKSHHPVGIILDLGLPDMRGEE 1036 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISKPISLSIFMETIKKYI 120 + +Q+K EL+ IPV ++A D++R G ++ KP++ + + + Sbjct: 1037 VLEQLKRSPELRHIPVYIISAK----DKQRALVDQGAIGFLQKPVNDAQIATAQRTLL 1090 Score = 43.6 bits (103), Expect = 0.010, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 L + +G L + E L H D+ + D ++ ++ +E+ +Q+++ Sbjct: 1110 QDLIAEKAMNAGMQQLVVQKPEEVLAKTAGHPFDLFLTDYDIEGMTCVELCQQVRQHQ-- 1167 Query: 75 QEIPVIAVTAFAMKGDE 91 E+P+I ++ ++ + Sbjct: 1168 PELPIIIYSSRSLNEQQ 1184 >gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 234 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 70/121 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++ +D ++L ++ +GY L+ +G+ ALE ARQ P +I++D+ L E+SGL Sbjct: 8 KRILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGL 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K +K ++ IPVI +TA A + D + G + Y++KP S + +K + Sbjct: 68 EVCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRR 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] Length = 235 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKAIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] Length = 235 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + + + + GY + +G EAL+ PD+II+D L E+ G Sbjct: 1 MKKVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWMLPELEG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ S +P+I ++A + D+ + G + Y++KP S + IK ++ Sbjct: 61 LEVAKEIRKSS---HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 230 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++++D+ +L R +E G+ + NG +ALE+ R P+++I+DI L G + Sbjct: 8 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + IPVI ++A D+ + G + Y+ KP + +K + Sbjct: 68 VCREIRK---ISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 123 >gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D+ + + +E +GY L +G+ AL+ +RQ PD+I++DI L E+ Sbjct: 1 MPARILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ S ++P++ +TA + D + G + Y++KP S + IK + Sbjct: 61 GLEVCREIRKSS---DVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 256 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +L + GY +G++AL R KP ++I+D+ L I G E Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+ +S +P++ +TA + + D+ + G + Y+SKP + + +K + + Sbjct: 91 LCRLIRTES---SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRS 147 >gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 228 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D+ +L +E GY L NG+ A++ + P ++++DI L I G + Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + IP+I +TA D+ + G + Y+ KP + +K + Sbjct: 66 VCREIRK---VSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121 >gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13] Length = 233 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + ++ GY +G EA+ + +PD+I++DI L + Sbjct: 1 MEKKILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 243 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL+ + PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] Length = 228 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED ++ ++E GY A++ + A++ + PD++++D L S Sbjct: 1 MSRRILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ K+IK D + IP+I +TA + D+ + + G + YI+KP S M ++ Sbjct: 61 GLQLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVF 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + R +E G NG EA+E R+ PD++++DI + + G E Sbjct: 9 VLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPVMDGFEA 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++PVI +TA + D R + G + Y+ KP S + I+ + Sbjct: 69 LRRIRS---FSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRR 123 >gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++VED ++ + ++E SG+ ++ + A E + PD+I++D L S Sbjct: 1 MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K+ ++IPVI +TA + D+ R G + Y++KP S + IK + Sbjct: 61 GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR [Erwinia pyrifoliae Ep1/96] gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR [Erwinia pyrifoliae Ep1/96] gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia pyrifoliae DSM 12163] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K++++VED ++ ++E + Y ++ + A+ L + PD+I++D L S Sbjct: 1 MVKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 238 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 68/123 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED + +L R+++ET G+I NG +AL + +PD++I+D+ L + Sbjct: 1 MKPTILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +I++ S ++ ++ +TA A + D G + Y++KP S + ++ + Sbjct: 61 GLEVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 242 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL+ R+ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + R +E G NG EA+E R+ PD++++D+ + + G E Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++PVI +TA + D R + G + Y+ KP S + I+ + Sbjct: 69 LRRIRS---FSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRR 123 >gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+E ++ + +E SGY NG EA E ++KPD++++DI L I G++ Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS IP+I +TA D+ + G + YI KP + +K + Sbjct: 67 VLKWIRKDS---TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 >gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] Length = 229 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GVNFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 327 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ ++ + +G + +G AL A H+PD++++D+ L + GLE Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 78 VCRRMRERHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium botulinum H04402 065] Length = 228 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+E ++ + +E SGY NG EA E ++KPD++++DI L I G++ Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS IP+I +TA D+ + G + YI KP + +K + Sbjct: 67 VLKWIRKDS---TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 >gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 228 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I++D++ +L G+ NG E + + P+++I+DI L G + Sbjct: 6 KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDGWD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+ S +IP+I +TA + D+ + G + Y+ KP + +K + Sbjct: 66 ICREIRRMS---DIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRR 121 >gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + + + T+N EA+++ PD++++D L +S Sbjct: 1 MAATILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++ + ++IP+I +TA A + D+ + G + YI+KP S + IK + Sbjct: 61 GADFARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|302338300|ref|YP_003803506.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301635485|gb|ADK80912.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 242 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D E +KL + + GY L G E LE AR H PD+II+D+ L I G+ Sbjct: 10 KTILVVDDEEHVVKLLSMNLTSRGYDCLCAYTGEEGLEQARSHHPDLIILDVMLPGIDGI 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + +K D Q IPV+ ++A + D+ +GG + YI+KP SL ++ + + Sbjct: 70 EVCRLLKSDPRTQLIPVLMLSAKSEGIDKIHGLEGGADDYITKPFSLRELFLRVEASLRQ 129 >gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116] gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] Length = 229 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] Length = 229 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 243 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL++ + PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 234 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + + +E S + NG E EL +++ PD++I DI + ++ Sbjct: 5 MSARLLLVDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNPPDLVISDIMMPQVD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + Q++ED + +PV+ +TA M D + + GC+AYISKP + + + Sbjct: 65 GYQFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLL 124 Query: 121 -GEA 123 A Sbjct: 125 VRRA 128 >gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family [Desulfomicrobium baculatum DSM 4028] Length = 231 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++ED L +++ GY R+G + L+L + +PD++++D+ L +S Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K +K E IP+I +TA + D + G + Y+ KP S M IK + Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 236 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + + + GY + NG EAL + KPD+I++D + E+S Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ S+ IP+I +TA + D+ + G + Y+ KP SL IK + Sbjct: 61 GIEVLREIRKKSQ---IPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23] gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23] gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W] gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II] Length = 235 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + L + +E Y +G EAL+ R D II+D+ L +SG Sbjct: 1 MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++T++I+ED + P++ +TA + D+ + G + Y++KP S + IK Sbjct: 61 LDVTRKIREDKI--QTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIER 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 230 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E+ G+ +Q G EAL L + PDVI++D L +SG+E+ Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q+K + +P+I ++A + + D R + G + Y+ KP S+ M ++ + A Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127 >gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] Length = 240 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D E ++L ++ GY +G AL+LA D I++DI L ++ Sbjct: 1 MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+ S+ + P++ V+A + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRIR--SKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+E ++ + +E SGY +G EA E ++KPD++++DI L I G++ Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS IP+I +TA D+ + G + YI KP + +K + Sbjct: 67 VLKWIRKDS---TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 >gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae] Length = 229 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 243 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + GY + +G EA+ + PD++++D+ + ++ G Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D+ +L +E GY L NG+ A++ + P ++++DI L I G + Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + IP+I +TA D+ + G + Y+ KP + +K + Sbjct: 66 VCREIRK---VSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121 >gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia enterocolitica W22703] Length = 279 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 51 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K + ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 111 GIQFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170 Query: 121 GE 122 Sbjct: 171 RR 172 >gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 229 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D E ++ + GY + +G EAL R D+II+D+ + ++ G+ Sbjct: 5 RVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVMMPKMDGIA 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ + ++P+I +TA + D + G + Y+ KP S + IK + A Sbjct: 65 VCQEIR---RVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRA 121 >gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] Length = 237 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +E SG+ + +G E L PD++++D+ L ++ Sbjct: 1 MSQKVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K ++ SE ++P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GVEVCKAVR--SEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D ++ ++E +G+ A++ + A+ + PD++++D L S Sbjct: 1 MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+ K++ + IP+I +TA + D+ R + G + Y++KP S M IK I Sbjct: 61 GIQIAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329] Length = 229 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL R +PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D ++L + +G+ + NG EALE A PD+I++D+ + + G Sbjct: 5 AKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T++++E+ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 65 EVTRRLRENGTT--TPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326] gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 229 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] Length = 231 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K V+IV+D ++ +E +GY L+ N +A L KPD++++D + SG Sbjct: 4 SKSVLIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMPGASG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E +++++D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 IEFARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLR 123 Query: 122 E 122 Sbjct: 124 R 124 >gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EAL PD+I++D+ L + G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ S +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 EVCREVRHKS---NVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRR 121 >gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D ++ R +E+S + ++ + EA +L PD+I++D L SG Sbjct: 1 MTTILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLPGRSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q+K++ + + IP+I ++A + D + G + YI+KP S + +K + Sbjct: 61 LELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E G +G EAL A+Q + DVI++D+ L ++ Sbjct: 1 MSKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPRMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+E +PVI +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQQIRE---FSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V++V+D +L ++ GY + NG EAL D +++DI + E+ Sbjct: 1 MSKYNVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4] gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316] gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY +G EAL + +PD+II+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K++++ IP+I ++A + D+ + G + Y++KP S + +K ++ Sbjct: 61 LEVAKEVRK---TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora CFBP1430] gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia amylovora ATCC 49946] gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia amylovora ATCC 49946] gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora CFBP1430] gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora ATCC BAA-2158] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + AL L + PD+I++D L S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis] Length = 238 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I +D + L + ++ Y +G +AL L Q+ ++I+D+ + +I G+E Sbjct: 5 RVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +P++ +TA ++GD+ G + YI+KP S++ + IK + Sbjct: 65 VCRRMRNHT---NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120 >gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL+ R PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 244 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + R + GY +G++AL+ A + PD+I++DIQ+ + GL Sbjct: 9 QRILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + PV+ +TA GD G + Y+ KP L ++ + Sbjct: 69 TAARRLRASGSV--TPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 126 Query: 123 A 123 + Sbjct: 127 S 127 >gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 232 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D ++L + ++ GY + NG AL++ + +K D++I+DI + + G Sbjct: 1 MKNILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + + +PVI ++A + + D + G + YI+KP S+ + +K Sbjct: 61 YEVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINLIKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 232 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+I +D ++ + G+ ++ +G EAL + KPD+I++DI + + G Sbjct: 5 QTVLIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIMMPVLDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ KQ+++ + ++P+I +TA D + G + YI+KP + + +K + Sbjct: 65 EVCKQVRK---ISDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D +L +K +E G +G EALE A++ + D++++D+ L ++ Sbjct: 1 MSKKILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +QI+E ++PV+ +TA + D+ + G + YI+KP ++ IK + Sbjct: 61 GFQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] Length = 235 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + L +E GY +G EALE+A D I++D+ L + G Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EITK+++++ IP+I +TA D + G + Y+SKP S + IK Sbjct: 61 IEITKRLRQEKV--NIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIAR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] Length = 226 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ +++T G+ + +G +A+ A++H PD+I++D+ L +S Sbjct: 1 MTPKILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + ++E +P++ +TA D + G + YI+KP + ++ + Sbjct: 61 GIDVCRTVRE---FSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++I++D+E ++ + +E+SGY +G A ++KPD++++D+ L + Sbjct: 4 MLGKILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K I++DSE PVI +TA D+ + G + YI KP + IK + Sbjct: 64 GIDVLKWIRKDSET---PVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 237 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E+ GY G +A ++ PD++++D L +S Sbjct: 1 MAARILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB, [Edwardsiella ictaluri 93-146] gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative [Edwardsiella ictaluri 93-146] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED + ++E +GY L+ + AL + PD+I++D L S Sbjct: 1 MTIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ+K + ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis HI4320] gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis HI4320] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + AL PD++++D + S Sbjct: 1 MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ+K ++ ++IP+I +TA + D+ + + G + Y+ KP S + +K + Sbjct: 61 GIQVIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 245 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED++ +L R+ +E + + T +G L + ++ PD+I++D+ L ++ G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +I++ ++ ++ +TA + D G + Y+ KP S + ++ + Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 122 E 122 Sbjct: 131 R 131 >gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED E L R +E+ GY G EA R+ PD++I+D L +S Sbjct: 1 MPAHILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +PVI +TA + + R G + Y+ KP S+ + ++ + Sbjct: 61 GIELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY ++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 232 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 72/121 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++L + + GY + +G++ALE+ + +K D++I+DI + + G Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + + + +PVI ++A + + D+ + G + YI+KP S+ + +K + Sbjct: 61 YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E G+ NG EAL L + PD+I++D L +SG+E+ Sbjct: 8 VLLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q+K ++ + +P++ ++A + + D R + G + Y+ KP S+ M ++ + + Sbjct: 68 CRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRS 126 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I+ED+E +++ + + GY+ G L+LAR+H+PD+II+D L + Sbjct: 1 MKERILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ L P++ +TA D + G + Y++KP L + I+ + Sbjct: 61 GLEVCQRLR---TLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319] gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319] Length = 235 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + + ++ GY +G+EALE + +P++I++DI L + Sbjct: 1 MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM B1551] gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM B1551] Length = 235 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + + ++ GY +G+EALE + +P++I++DI L + Sbjct: 1 MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S] Length = 237 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + G+ +G EALEL + +PD+I++DI L G+ Sbjct: 4 KKILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 223 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + + L + GY ++ +G+ A++ +K D++++DI + E+ G Sbjct: 1 MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E K+I+E +P+I VTA D + K G + YI+KP S + I+ + Sbjct: 61 WETCKRIRE---FSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 234 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++VED ++L + +++ GY + +G EA L + D+ I+D + +IS Sbjct: 1 MAAKIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMIPKIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ +E Q +P+I +TA + D R G + Y++KP S+ M IK + Sbjct: 61 GIELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 238 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + +E GY +G A++ + PD++I+D+ L +I Sbjct: 1 MPKKILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREIRKK---HDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + L + +E GY R+G +AL A + PD++++D L ++S Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +P+I +TA + D R G + Y+ KP S++ I+ + Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 232 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58 +K+ ++IV+D ++L + + SGY+ +G A+E+ D++I+DI L Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ K+I+E +IP+I +T A + D R G + Y++KP S+ + +K Sbjct: 61 LNGFEVCKRIRE---FSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKA 117 Query: 119 YIGEA 123 + + Sbjct: 118 ILRRS 122 >gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 236 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +E +GYI +G EALE P++I++D+ L + Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato Max13] gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato K40] gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY ++ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84] gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84] Length = 234 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EALE+ PD++I+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D +L +K R +E G +G EALE A++ + D+I++DI L +++ Sbjct: 1 MSKRVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLPKLT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI+E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GLEVCQQIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] Length = 233 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED E L R +E+ GY G EA R+ PD++I+D L +S Sbjct: 1 MPARILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +PVI +TA + + R G + Y+ KP S+ + ++ + Sbjct: 61 GIELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 228 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D +L +E +G+ +G EA + PD++++D L S Sbjct: 1 MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ L+ +P+I ++A + + ++ + G + YI+KP S + IK + Sbjct: 61 GIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 234 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++ +D+ ++ ++ + Y ++ NG EA+ L KPD+I++DI + +I G E Sbjct: 5 KVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIMMPDIDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I++ +P+I +TA + D + G + Y++KP S + IK Sbjct: 65 VCKEIRKK---ANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRR 120 >gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 234 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L R+ +E + R G++ALE Q +PDVI++DI L E+ GLE+ Sbjct: 3 ILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQPDVIVLDIMLPELDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 63 CTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRRS 121 >gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] Length = 228 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED ++ +E G+ + NG E L ++ PDVI++D + +SG+E Sbjct: 6 HVLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K E + IP+I ++A + + D+ R + G + Y+ KP S+S M ++ + Sbjct: 66 VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRR 124 >gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630] gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196] gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291] gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08] gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07] gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile] gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196] gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291] gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08] gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 70/122 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++++D ++L + +E S Y + +G + A++ KPD+I++D L IS Sbjct: 1 MNTKVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKAKEIKPDLILLDWMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ D +L+ IPVI +TA M+ D+ + G + YI+KP S+ + I + Sbjct: 61 GIEVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ ++ G+ L NG EAL + + PD+I++D + +SG+E Sbjct: 7 TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNVSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+K SE + IP+I ++A + + D R + G + Y+ KP SL M ++ + Sbjct: 67 VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125 >gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + L ++ +E G+ +G+EAL+L + K D++++DI + E+SG + Sbjct: 5 RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E + IPVI +TA A + D+ + G + YI+KP SL I+ + A Sbjct: 65 VLRRIREKIQ---IPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRA 121 >gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 238 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D E +L R +E GY+ + +G AL+ A +I++D+ L + G+E Sbjct: 7 RILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + PVI +TA + + + + G + Y+ KP S + +K + + Sbjct: 67 VCTRLRQ---TKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123 >gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 238 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D E +L + +E + + NG ALE+A + + DVI++D+ + ++ G+ Sbjct: 5 ARILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMPKLDGM 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++++ + P++ +TA + + + G + YI KP S + +K + Sbjct: 65 QVCEELRK---TKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRR 121 Query: 123 A 123 A Sbjct: 122 A 122 >gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 234 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL KPD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++KV++V+D +L +K + +E +G EALE A++++ D+I++D+ L ++G Sbjct: 1 MRKVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLPGLTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 FEVCQAIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 243 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + GY + +G EALE R +PD++++D+ + ++ G Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L] Length = 1156 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 K++IV+D +N ++ + + Y NG+EALE+ +PD+I++D+ + ++G Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +I++ E+PVI +TA D G Y++KP S + IK ++ Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLR 864 >gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] Length = 228 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED ++ ++E GY A++ ++ L + PD++++D L S Sbjct: 1 MPRRILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+IK D + IP+I +TA + D+ R + G + YI+KP S M ++ Sbjct: 61 GIQLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVF 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR [Erwinia billingiae Eb661] gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR [Erwinia billingiae Eb661] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + A+ L + PD+I++D L S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|158338214|ref|YP_001519391.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158308455|gb|ABW30072.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris marina MBIC11017] Length = 545 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+V+D N+++ + + ++GY +G AL+ H P +I++DIQ+ + G E+ Sbjct: 7 IMVVDDTPANLEVISETLSSAGYRVAAAISGERALKRLHTHPPALILLDIQMPVMDGFEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QIK ++ IP+I +TA + + G YISKP + + ++ ++ Sbjct: 67 CRQIKANAATANIPIIFITARSDTQSILHGFEMGAVDYISKPFQEAELLARVRTHL 122 >gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 240 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 67/126 (53%), Gaps = 4/126 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQE 58 M K+++++ED+ +L D + + Y G E L++ A++ D+II+D+ L + Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+++ ++I+ ++S+ ++P++ +TA D + G + YISKP + I Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 117 KKYIGE 122 + + Sbjct: 121 RAVLRR 126 >gi|86605678|ref|YP_474441.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86554220|gb|ABC99178.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 374 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D+ + + +E GY G+E LE A P +II D + ++ G Sbjct: 1 MTAILIVDDDPTIRLVLKRSLERQGYTVEMASGGLEGLEKAHLLTPGLIICDWMMPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++IK D + I +TA D + G + ++SKPI + ++ + Sbjct: 61 LEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGLR 120 >gi|329576541|gb|EGG58048.1| putative transcriptional regulatory protein WalR [Enterococcus faecalis TX1467] Length = 159 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + ++ + + GY +G EALE + +PD+II+D+ L ++ G Sbjct: 1 MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 LEVAREVRK---THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + L+ Y +G+ LE + PD+++ D+ + + G E Sbjct: 397 RILLADDNADMRDYIKRLLTDL-YEVETVSDGIAVLEALARELPDLVLTDVMMPGLDGFE 455 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ + ++IP+I ++A A + K G + Y+ KP S + ++ ++ Sbjct: 456 LLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHL 512 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 3/112 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ L+ +G + + EAL++ KPDV++ DI + EI G + Sbjct: 1447 ILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVLAGSKPDVLLCDIGMPEIDGYML 1506 Query: 65 TKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 KQ++ S + I IA+TA+A + E+ K G + +ISKPI + Sbjct: 1507 IKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELL 1558 >gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1156 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 K++IV+D +N ++ + + Y NG+EALE+ +PD+I++D+ + ++G Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +I++ E+PVI +TA D G Y++KP S + IK ++ Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLR 864 >gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 282 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D + + + +E GY + +G A+ELA KPD+I++D+ L Sbjct: 44 MQRRILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLMLPVKD 103 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++++ P+I +TA + D+ + G + Y++KP + +K ++ Sbjct: 104 GMDVCREVRGKL---NTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHL 160 Query: 121 GE 122 Sbjct: 161 RR 162 >gi|78101053|pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain gi|78101054|pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain gi|78101055|pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain Length = 125 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family [Nitrosomonas eutropha C91] Length = 240 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 61/123 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED +L + + YI + + +A+ + PD+I++D L S Sbjct: 1 MSATVLVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKINEILPDLILLDWMLLGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E + ++ D + IPVI +TA +GD+ + G + YI+KP S + IK + Sbjct: 61 GIEFARSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 233 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G +AL+ PD+I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ +S ++P+I ++A D+ + G + YI KP + ++ + Sbjct: 65 QVCREIRHNS---DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRR 121 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ +D E L +E GY + NG+EA+E ++ ++++D+ + E+ G Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +I+E +P+I +TA + + D K G + YI+KP S + I+ + Sbjct: 65 LTACMRIRE---FSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D+ ++L +E +G+ L +G AL LAR +PD++++D+ L ++ Sbjct: 1 MPQRILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++T+ I+ D L +P+I +TA D + G + YI+KP + + ++ + Sbjct: 61 GADLTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio cholerae LMA3894-4] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E GY A++ + A+ + PD++++D L S Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K + + IPV+ +TA + D+ R + G + YI+KP S + +K I Sbjct: 61 GINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] Length = 299 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D +L R+ ++ +GY+ + +G AL L D++I+D+ + + G Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ PVI +TA + D+ +GG + Y+ KP S + +K + Sbjct: 132 MTCLREMRA--RHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLN 189 Query: 122 E 122 Sbjct: 190 R 190 >gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + + + + + G+ ++ +G +A+E A + KPD+I++DI L ++ Sbjct: 1 MNAKILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++++ P+I +TA + D+ + G + YI+KP S M +K + Sbjct: 61 GFTVCRKLRQ---TISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda FL6-60] Length = 229 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED + ++E +GY L+ + AL + PD+I++D L S Sbjct: 1 MSIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ+K + +EIPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ +L + G + NG EAL++ K D++IMDI + E+ G Sbjct: 1 MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + ++P++ +TA ++ + G + Y+ KP + +K + Sbjct: 61 WELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 238 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E GY + +G AL +A D+I++D+ L I G+E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PVI +TA + + + + G + Y+ KP S + +K + + Sbjct: 67 VCSRLRQ---VKATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRS 123 >gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Psychrobacter sp. 1501(2011)] Length = 240 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 67/126 (53%), Gaps = 4/126 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQE 58 M K+++I+ED+ +L D + + Y G E L++ A++ D+II+D+ L + Sbjct: 1 MSKQILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 59 ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+++ ++I+ ++++ ++P++ +TA D + G + YI+KP + I Sbjct: 61 MDGMQVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120 Query: 117 KKYIGE 122 + + Sbjct: 121 RAVLRR 126 >gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2] gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + L + ++ +GY + +G E +LA KPD+I++D+ L ++ Sbjct: 1 MDKKILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKQLRQQKIA--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|269925905|ref|YP_003322528.1| response regulator receiver protein [Thermobaculum terrenum ATCC BAA-798] gi|269789565|gb|ACZ41706.1| response regulator receiver protein [Thermobaculum terrenum ATCC BAA-798] Length = 278 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D + L ++ + GY +G AL+L R PD++I+DI L I G Sbjct: 1 MSRILVVDDEPALLDLLKEHLTMEGYTVDTAPSGEYALDLMRIRPPDLVILDIMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++ D +LQ+IPVI +TA ++ D + G E Y++KP + + I+ + Sbjct: 61 YEVCTRMQADPKLQDIPVIMLTAKSLTSDLVAGYESGAEDYVTKPFDIDELLIRIRARL 119 >gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 234 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R ++ GY G +A ++ PD++++D L +S Sbjct: 1 MNARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] Length = 229 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ ++ G+ L NG EAL + + PD+I++D + +SG+E Sbjct: 7 TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNVSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+K SE + IP+I ++A + + D R + G + Y+ KP SL M ++ + Sbjct: 67 VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125 >gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 235 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + + GY + +G EAL L PD++++D L E+ G Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +QI+ + + PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 IEVLRQIRSND---DTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 1274 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 48/116 (41%), Positives = 76/116 (65%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+ N +L + L+ +GY NG +ALE+ Q D+++MD+Q+ + G E Sbjct: 1055 VLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQSNFDIVLMDMQMPVMDGYET 1114 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ D + +P+IA+TA AMKGD E+ GC+ Y++KP+ I ++TIKKYI Sbjct: 1115 TRVIRSDERYKSLPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTIKKYI 1170 Score = 114 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ ED +L + +E +GY + T G +AL LA+ ++PDV+++DI L ++SG E+ Sbjct: 796 VLVAEDEWTTKQLIANYLEKAGYTVVATDQGKQALTLAKIYQPDVLVLDILLPDLSGWEV 855 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +IK+D E Q+IPV+ + ++ER G +I K +S + + ++K Sbjct: 856 LAKIKKDQETQDIPVVVCSVL---PEKERAFSLGAVDFIEKTVSEKVLVNRLQKL 907 Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62 +++++D+++ ++ ++ +GY EAL + + II+D+ + + G Sbjct: 917 HIVLIDDDKMALEFLNCIVGGAGYQTHSFMLAEEALNYIINGGQVHAIILDLLMPGMDGF 976 Query: 63 EITKQIKEDSELQEIPVIAVTAFA 86 E ++ D+ + IPV+ T Sbjct: 977 EFLDNLRADANYKSIPVLIYTGKD 1000 >gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 234 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL KPD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] Length = 236 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + L + +ET+GYI +G EALE + +P+++++D+ L + Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ D L +P++ +TA + D + G + Y++KP S + +K + Sbjct: 61 GIEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 71/119 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+E +L + +E + + T +G EALE + + D+II+D+ L SGL+I Sbjct: 3 VLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLMLPGASGLDI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I+E+S +++PVI +TA + + + + G + Y++KP S+ + I+ + A Sbjct: 63 CKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRRA 121 >gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++V+D+ + + +GY +G AL PD++++D+ L + Sbjct: 1 MTQRVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ +P+I +TA + D + G + Y+SKP S + + + Sbjct: 61 GLEVCRRLRTKPGG--VPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|220906227|ref|YP_002481538.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219862838|gb|ACL43177.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 566 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 63/118 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+++ D + +G+ L +G AL+ A PD+I++DI + + G E Sbjct: 10 TILVVDDTPTNLEVLFDFLSNAGFKVLFAEDGESALQKANYITPDLILLDILMPGMDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++K++ + IPVI +TA D+ + G +I+KP+ + ++ ++ Sbjct: 70 TCQRLKQNGSTRSIPVIFLTALTDTVDKVKGFALGAVDFITKPLQYEEVLARVETHLR 127 >gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 241 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA D+ + G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 2250] gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae FF5] gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae 642] gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. B076] gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. race 4] gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. mori str. 301020] gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. pisi str. 1704B] gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae Cit 7] gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY ++ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY ++ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 216 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IVED ++ + +G+ + +G EA E PD+I++D L SG+ Sbjct: 8 KTVLIVEDEPAIREMVSFALARAGFEVDEAVDGGEAQERIASRLPDMILLDWMLPGTSGI 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++K D +++P+I +TA + D + G + Y++KP S + IK + Sbjct: 68 DLARRLKRDEYTRDVPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMRR 127 >gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 244 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E +L R +E Y+ + NG EAL LA ++ D+I++D+ L G+E Sbjct: 12 KILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPGKDGIE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + KQ++E + PVI +TA + + + + G + YI KP S + +K + Sbjct: 72 VCKQLREK---KATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 127 >gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 234 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R ++ GY G +A ++ PD++++D L +S Sbjct: 1 MSARILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 252 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EA+EL +PD+II+D+ L EI G Sbjct: 18 MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 78 LEVAKSIRK---TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 134 Query: 122 E 122 Sbjct: 135 R 135 >gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 232 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 72/121 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++L + + GY + +G++ALE+ + +K D++I+DI + + G Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + + + +PVI ++A + + D+ + G + YI+KP S+ + +K + Sbjct: 61 YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7] gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1] gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas aeruginosa PA7] gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] Length = 229 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 >gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator [uncultured prokaryote AT5] Length = 234 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+K ++IVED E + L R +E GY G EA L ++ PD++I+D L + Sbjct: 1 MMKANILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ +E + +P+I +TA + + R G + YI KP S+ ++ Sbjct: 61 SGIELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRAL 120 Query: 120 IGEA 123 + A Sbjct: 121 LRRA 124 >gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] Length = 229 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VED ++ ++E GY ++ + EA+ L ++ P++I++D + S Sbjct: 1 MSMRVLVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K++ + IP++ +TA + D+ R + G + YI+KP S IK + Sbjct: 61 GIQFIKLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVM 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 276 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ ++ + +G + +G AL A H+PD++++D+ L + GLE Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 78 VCRRMRERHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580] gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2] gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580] gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2] Length = 240 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G L A + KPD+I++D+ L ++ Sbjct: 1 MSKKILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K++++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIEVCKELRQKKLMY--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33] gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7] gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407] gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3] gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407] gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7] gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein, C-terminal [Streptococcus suis GZ1] gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14] gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3] Length = 234 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EALE+ PD++I+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium HTCC2083] gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium HTCC2083] Length = 227 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 70/118 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED ++ +E GY LQ +G E L LAR++ PD+I++D L E+SG+E+ Sbjct: 6 ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K D+ + IP+I ++A + D+ R + G + Y++KP S+ M +K + Sbjct: 66 CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRR 123 >gi|294495497|ref|YP_003541990.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292666496|gb|ADE36345.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 170 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I++D + + +++ GY ++ NG LE + PD+I++D+ + ++ G Sbjct: 48 QTILIIDDEPDAIIAAKRALQSEGYNVIEAYNGKTGLEAIEEKTPDLILLDVMMPDMDGF 107 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI KQ+K+D IP+I +TA D + G + YI+KP +L I+ + Sbjct: 108 EICKQLKKDELYNHIPIIMLTAKGEVDDRIEGIETGADDYITKPFNLRELKARIRMVLRR 167 Query: 123 A 123 A Sbjct: 168 A 168 >gi|325273090|ref|ZP_08139394.1| histidine kinase [Pseudomonas sp. TJI-51] gi|324101779|gb|EGB99321.1| histidine kinase [Pseudomonas sp. TJI-51] Length = 305 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G G EAL + D+++MD + + G Sbjct: 184 ARILLVEDNPVNQLVAKGMLAKLGCQVELATQGAEALAALERQPFDLVLMDCNMPVMDGY 243 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I++ +P++A+TA AM + ER R G Y++KP + + ++ Sbjct: 244 EASRRIRQSGRWPHLPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 301 >gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] Length = 233 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV+IVED+ +L +E G+ ++G + +E R +P ++++DI L + Sbjct: 1 MAQKVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIMLPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E+S PVI +TA D+ + G + YI KP + + I + Sbjct: 61 GWTVLKKIREESAT---PVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1245 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 76/120 (63%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN++N ++ +L+ ++G NG A+ELA QH+ D ++MDIQ+ + G E Sbjct: 987 RVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVELAAQHRFDTVLMDIQMPVMDGYE 1046 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++ I+ D +++P+IA+TA AM D +R + G Y+SKPI+ T++++ G A Sbjct: 1047 ASRLIRADQACRDLPIIAMTAHAMPQDRQRCLESGMNDYVSKPINPQELYSTLERW-GRA 1105 Score = 57.8 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 57/116 (49%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISG 61 K+++++D+ + +F L + G A + E L + D++++D L + G Sbjct: 838 KLLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLGCLERSEKPYDLLLLDDSLSGLDG 897 Query: 62 LEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +Q++ S L P +I +T + + +++ + G + +++P++L + + Sbjct: 898 FAVARQVRRMSPLHHQPKIIMITGYGDEEAHKQVVEEGLDGCLTRPVTLRSLFDAV 953 >gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 231 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + L + +E SG+ NG EA+ A D+I++D+ L E+ Sbjct: 1 MSKRILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + ++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCRTLRMNQV--NTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 232 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED + + + +E GY L +G E LE+ PD++++DI + ++ G Sbjct: 1 MPKVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + K +++ + +P+I +TA A + D+ + G + YI+KP + + +K + Sbjct: 61 LSVCKLVRK---TKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|114794859|pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob gi|114794860|pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob gi|114794861|pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob Length = 124 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED + R +E GY + +G++ L+ AR+ +PD++++DI L + G Sbjct: 1 MATVLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++S ++P+I +TA + D + G + YISKP SL F+ ++ + Sbjct: 61 FSVCRILRQES---DVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 226 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ +L + G + NG EAL++ K D++IMDI + E+ G Sbjct: 3 MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + ++P++ +TA ++ + G + Y+ KP + +K + Sbjct: 63 WELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLK 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 227 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ +++ G+ + +G +AL ++H PD++++D+ L + Sbjct: 1 MSSRILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+ + ++P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GFDVCRAIR---HVSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D E +L R +E Y + NG EALELA + D+I++D+ + + G+E Sbjct: 6 TLLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDGVE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++ + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 MCQELRKK---KATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRA 122 >gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125] gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125] Length = 229 Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K+ ++IV+D +L + G+ G EA++ Q D++++D+ + E Sbjct: 1 MNKRHNILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G K+I+ +IP+I +TA + D+ + G + YI KP S + I+ Sbjct: 61 MDGFTACKEIRA---FSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEV 117 Query: 119 YIGE 122 + Sbjct: 118 ALRR 121 >gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR [Erwinia sp. Ejp617] Length = 229 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K++++VED ++ ++E + Y ++ + A+ L + PD+I++D L S Sbjct: 1 MVKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] Length = 242 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + Y +G +AL +PD+I++D+ L + G Sbjct: 15 QKILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLPGMDGY 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ ++P+I ++A D+ + G + YI KP + +K + Sbjct: 75 QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRR 131 >gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +ALE A ++PD++++DIQ+ + GL Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 71 TAARRIR--GAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 234 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED E +L + + G+ +G E + +Q +PD++I+D L + G Sbjct: 1 MSHILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWMLPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+E +PV+ +TA + ++ + G + Y++KP S ++ + Sbjct: 61 VEVCRKIRE---TSIVPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] Length = 234 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + ++ GY + +G EALE + PD++++D+ L + +G Sbjct: 1 MHKILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I++DS +P+I +TA + D+ + G + Y++KP S +K + Sbjct: 61 LEVCREIRKDSA---VPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 227 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + R +E G+ + +G +ALE PD++I+DI L + G + Sbjct: 6 ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKKDGWSV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ + +P+I ++A + D + G + Y++KP S + +K + + Sbjct: 66 CREIRRQTA---VPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRS 121 >gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205] Length = 249 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALE R PD++++D+ + ++ G Sbjct: 11 TILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVMMPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 71 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 126 >gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 229 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ V+D+ +K+ + + G+ + +G EAL+ ARQ PD++I+D+ + + Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +++K +E+P+I ++A + D + G + Y +KP S + +K + Sbjct: 61 GFETYQKLKAQ---REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 241 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +L R +E GY+ + +G AL+ + D+I++D+ L + G++ Sbjct: 9 RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDGVD 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + PVI +TA + + + G + Y+ KP S + +K + + Sbjct: 69 VCRELRNK---KATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRS 125 >gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++ +D ++L RD E GY NG+EAL+ H PD+I++D+ + I Sbjct: 1 MSKKILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALDQ-SSHNPDLILLDVNMPGID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+ + P++ +TA + D + G + YI KP S+ ++ ++ Sbjct: 60 GFEVCRMIR---DHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator [Pseudomonas fluorescens SBW25] gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens SBW25] gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] Length = 229 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|332827076|gb|EGJ99861.1| hypothetical protein HMPREF9455_03734 [Dysgonomonas gadei ATCC BAA-286] Length = 1355 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNE + L +++ Y L NG+EAL+ + + D++I D+ + + GLE+ Sbjct: 1108 VLLVEDNEELLTLIGNILSKH-YHVLTASNGVEALDRVKDNDIDIVISDVMMPRMDGLEL 1166 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K+D E IPVI +TA D G + YISKP L + I ++ Sbjct: 1167 CRRLKKDIETSHIPVILLTAKNSADDRIECYNAGADGYISKPFELKVLEARINNFL 1222 >gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I +D + L + +E Y NG EAL L +K ++II+D+ + ++ G+E Sbjct: 5 RVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +P++ +TA + D+ G + YI+KP S++ + +K + Sbjct: 65 VCRRLRNKT---NVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRR 120 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + L + ++ +GY +G E L A + + D+I++D+ L + Sbjct: 1 MNKKILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K++++ P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKELRQHKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D +L +K R +E G +G EALE A+ + D++++D+ L ++ Sbjct: 1 MGKRILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +QI+E ++PV+ +TA + D+ + G + YI+KP ++ IK + Sbjct: 61 GFQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] Length = 271 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D L R+ ++ +G+ + +G AL + Q D++I+DI + + G Sbjct: 45 MAKILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDG 104 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ + PVI +TA + + D+ +GG + Y+ KP S + +K + Sbjct: 105 MTCLREMRTRKIM--TPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLA 162 Query: 122 E 122 Sbjct: 163 R 163 >gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 229 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + D ++ SG+ N E + +Q+ PD++I D+ + ++ Sbjct: 1 MSAQLLLVDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + KQ++ED Q +PVI +TA M GD + + G +AY+ KP + ++ + Sbjct: 61 GYQFLKQLREDPRFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLL 120 Query: 121 GE 122 Sbjct: 121 SR 122 >gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++IV+D++ +L + + +G+ L G E +L QH PD+II+DI + G Sbjct: 8 SKQLLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNEMRKLLAQHNPDLIILDIMMPGDDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +QI+ DS+ +P+I +TA + + D + G + YI+KP S IK + Sbjct: 68 FTLCQQIRRDSQ---VPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] Length = 229 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E GY A++ + ALE + P++I+MD L S Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKICEPYPELILMDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IP++ +TA + D+ R + G + YI+KP S M +K + Sbjct: 61 GINLIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 230 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + + + Y ++ N + +L +H+PD +++D L +SG+ + Sbjct: 6 ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+++ + P+I +TA + D+ + + G + Y+ KP S + +K + Sbjct: 66 AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRR 123 >gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] Length = 234 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EALE+ PD++I+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland 1988] gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL R2-561] gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161] gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL J2-003] gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28] gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e] gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 237 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + G+ +G EALEL + +PD+I++DI L G+ Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 234 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + L + +E Y +G EAL+ R D II+D+ L +SG Sbjct: 1 MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++T++I+E+ + P++ +TA + D+ + G + Y++KP S + IK Sbjct: 61 LDVTRKIREEKI--QTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIER 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 247 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L + G Sbjct: 1 MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I ++++ D EIPV+ +TA + + G + Y++KP + + ++ + Sbjct: 61 FTICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] Length = 229 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + AL PD++++D + S Sbjct: 1 MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMIPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I KQ+K +S ++IP+I +TA + D+ + + G + Y+ KP S + +K + Sbjct: 61 GLQIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545] Length = 234 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + N EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus 10329] Length = 235 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN + D + +G+ L NG +L H PD+II+DI + G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGAMWQLLNDHHPDLIILDIMMPGEDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA + D + G + YI+K S + IK + Sbjct: 64 TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++++D + + R +E GY L +G L++ RQ +PD++++D+ + ++S Sbjct: 3 MAKKILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMPKLS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+++SE PVI +TA D+ + G + Y++KP + IK + Sbjct: 63 GNDVCRIIRQESET---PVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 290 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ ++ + +G + +G AL A H+PD++++D+ L + GLE Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 78 VCRRMRARHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L + +E G+ +R+G+ AL + ++ PD+II+D+ + + GLE+ Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQPPDLIILDLMIPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 63 CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121 >gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 235 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D + + + + GY + +G EAL++ PD++++D L E+ G Sbjct: 1 MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +QI+ S ++PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 IEVLRQIRSKS---DVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 >gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 237 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + + GY + +G EAL + + KPD++++D L EI G Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +QI+ SE PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 VEVLRQIRSKSET---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 >gi|238063933|ref|ZP_04608642.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237885744|gb|EEP74572.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 318 Score = 167 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ + + G+ + +G EALE+ + +PD+ ++D+ + I GLE+ Sbjct: 11 ILVVDDDADIARFVEFNLRLHGFEVIHASDGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ + +PVI +TA M D+ G + Y+ KP + + + + Sbjct: 71 TRRLRANPMTSALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128 >gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 383 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L ++E GY +G AL PD+I++DI + ++G E+ Sbjct: 13 ILIVDDTPNNLHLLSSMLEEQGYEVRCANSGAIALRAVEMEHPDIILLDINMPNMNGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IGE 122 +++K D ++IPVI ++A + D+ + + G YI+KP L + ++ + + Sbjct: 73 CERLKLDPRTRDIPVIFLSALSETIDKVKAFRIGGIDYITKPFQLEEVLARLENHISLRR 132 >gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1111 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 K+++V+D +N+++ + + Y Q NG+EAL L + KPD+I++D+ + ++G Sbjct: 717 KILVVDDEPVNIQVIANNLSLQNYAITQATNGLEALTLIEKGFKPDLILLDVMMPRMTGY 776 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E E+P++ +TA D G Y+SKP S + IK ++ Sbjct: 777 EVCQKLREKYLHSELPILMLTAKNQVTDLVDGLSSGANDYLSKPFSKQELLARIKTHLR 835 >gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ +K + +E+ GY +G EA+ELAR D+II+D+ + +I GL+ Sbjct: 13 KILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLMMPKIDGLQ 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+E +P+I +TA + D+ + G + YI+KP ++ ++ + A Sbjct: 73 ACMRIRE---FSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRA 129 >gi|145594416|ref|YP_001158713.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303753|gb|ABP54335.1| response regulator receiver modulated diguanylate cyclase [Salinispora tropica CNB-440] Length = 326 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+E + + GY + +G EALE+ +H+PD+ ++D+ + + GLE+ Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHAGDGQEALEVIARHRPDLAVVDLMMPRVDGLEL 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ D +PVI +TA M D+ G + Y+ KP + + + + Sbjct: 71 TRRLRADPMTAVLPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128 >gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D + + + + GY + +G EAL++ PD++++D L E+ G Sbjct: 1 MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +QI+ S ++PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 IEVLRQIRSKS---DVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 >gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp. HTCC2999] Length = 228 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++VED ++ + ++E +G+ + + AL+ + PD++++D L S Sbjct: 1 MSRSILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++ KE +EIPVI +TA + D+ R G + YI+KP S + IK + Sbjct: 61 GVQLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D ++ + G+ L+ +G AL LARQ PD++++D+ L +++G Sbjct: 1 MANILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ D + PVI +TA + + D G + Y+ KP S + ++ + Sbjct: 61 LEVCRRLQSD---RRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|90577311|ref|ZP_01233122.1| putative DNA-binding response regulator [Vibrio angustum S14] gi|90440397|gb|EAS65577.1| putative DNA-binding response regulator [Vibrio angustum S14] Length = 243 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++V+D++ +L + + +G+ G E PD+I++DI + G Sbjct: 4 SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ ++P+I +TA + + D+ + G + YI+KP S + IK + Sbjct: 64 FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 406 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G AL LAR +PD +++DI L ++ GLE Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGLE 219 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +S ++PV+ +TA D G + Y++KP SL + ++ + A Sbjct: 220 VLRRLRAES--PDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 277 >gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D ++ + E G+ +G EA+ AR D++I+DI L ++ Sbjct: 1 MADRILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ +P++ +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 GFTVCREIR---RFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 275 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGL 62 +V++V+D+ ++ + +GY + +G ALE +PD++++D+ L + G Sbjct: 44 RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPGGMDGF 103 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 104 EVCRRIRARGP---VPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRR 160 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D + + L +E +G+ + +G EA+E +P+ II+D+ L ++ Sbjct: 1 MSKKVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCKQLRQQKVM--TPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G +AL+ +PD+I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ ++P+I ++A D+ + G + YI KP + ++ + Sbjct: 65 QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRR 121 >gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] Length = 260 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 32 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRLSEPFPDLVLLDWMLPGGS 91 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 92 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 151 Query: 121 GE 122 Sbjct: 152 RR 153 >gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1014 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + N+ + +L+E GY +G EAL+ Q +PD+I++D+ + + GLE+ Sbjct: 20 ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K+D + ++IPVI +TA K D + G Y++KP S + +K ++ Sbjct: 80 CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHL 135 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ EDN +N ++ + L++ GY NG EAL + DV++MD+++ E+ GL Sbjct: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDGLT 800 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T+ I+ E P +IAVTA++M+GD ER G Y+SKPI L + ++ Sbjct: 801 ATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855 >gi|89072346|ref|ZP_01158925.1| putative DNA-binding response regulator [Photobacterium sp. SKA34] gi|89051878|gb|EAR57330.1| putative DNA-binding response regulator [Photobacterium sp. SKA34] Length = 243 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++V+D++ +L + + +G+ G E PD+I++DI + G Sbjct: 4 SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ ++P+I +TA + + D+ + G + YI+KP S + IK + Sbjct: 64 FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 236 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L + +E G+ +R+G+ AL + ++ PD+II+D+ + + GLE+ Sbjct: 3 ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQPPDLIILDLMIPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 63 CARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRRS 121 >gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 242 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 56/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E E A++ PDVII D+ + G Sbjct: 16 RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGYG 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ED L PVI +TA M D + + G + Y+ KP + +K + Sbjct: 76 LLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134 >gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. NATL2A] Length = 242 Score = 167 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 56/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E E A++ PDVII D+ + G Sbjct: 16 RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGYG 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ED L PVI +TA M D + + G + Y+ KP + +K + Sbjct: 76 LLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134 >gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR [Erwinia tasmaniensis Et1/99] gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR [Erwinia tasmaniensis Et1/99] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + A+ L + PD+I++D L S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580] gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580] gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] Length = 240 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L + +E Y + NG EA++ A + D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ + + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 68 VCRQVR---DKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRS 124 >gi|332881804|ref|ZP_08449452.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680443|gb|EGJ53392.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1341 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN +++ ++ T Y L NG+EAL+ + H D+I+ D+ + + G + Sbjct: 1094 ILLVDDNMQLLEMMEKILATK-YRVLTAENGLEALKQLKAHAVDLIVSDVMMPGMDGFAL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++K E IPVI +TA D + G + Y++KP L + I + Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLR 1209 >gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 246 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++IV+D + + + GY +G +ALE A ++PD++++DIQ+ + G Sbjct: 12 TQRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L ++I+ + P++ +TA GD G + Y+ KP L I+ + Sbjct: 72 LTAARRIRGTGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLR 129 Query: 122 EA 123 + Sbjct: 130 RS 131 >gi|317121455|ref|YP_004101458.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591435|gb|ADU50731.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 326 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D +K R +E +G+ +G +ALE D+II+D+ L EI Sbjct: 1 MGERILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGGIDLIILDLMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +++++ ++P+I +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLTVCREVRK---TSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238] Length = 1127 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 60/115 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ ++ GY +G E L+ + P+++++D+ + +SG E+ Sbjct: 723 LVADDEPVNLQVLSSFLKLEGYRVKTANDGPETLKQLEEETPELVLLDVMMPGMSGYEVC 782 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ ++P+I +TA D R + G Y+SKP + IK ++ Sbjct: 783 QEVRKQYSHSQLPIIMLTALNQTQDRVRGFESGANDYLSKPFNKQELAARIKAHL 837 >gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 236 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + E GY + +G EAL + + +PD+I++D+ L G Sbjct: 1 MAKLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLPGRDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ + +++ ++P+I +TA + D+ + G + Y++KP S + +K ++ Sbjct: 61 MDVCRTVRQ---TYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 217 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED E K+ R + +GYI + +G E L+L + PD++++D+ + + G E Sbjct: 2 KILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVMMPKKDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IK + + PV+ +TA + DE R + G + YI KP SL I +K +G+ Sbjct: 62 VCRAIKSE---KTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNLLGD 117 >gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E +G EAL+ AR+ D+I++D+ L + Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + ++E +P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCRAVRE---FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 237 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D+ +E GY Q +G EALE ++ PD+++ D+ + E+ G Sbjct: 1 MKKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNPPDLVVSDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E ++++ Q +P I ++ D G + Y+ KP++ I+ + Sbjct: 61 IEFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIEAQLE 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 226 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 66/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+IVED +L +E GY AL T G+E LE AR+ PD+I++D+ L + G Sbjct: 1 MKKVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ + + IPV+ +TA + D + G + YI KP S+ M I+ + Sbjct: 61 TEVCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D E +L R +E GY ++++G AL+LA D+I++DI L + G E+ Sbjct: 7 ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIMLPGMDGTEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + PVI +TA + + + G + Y+ KP S + +K + + Sbjct: 67 CARLRQ---FKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRS 122 >gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 231 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + + + + +E GYI + +G EA+++A++ PD+II+D+ L ++ Sbjct: 1 MSSKILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K +++ +P++ +TA + D+ + G + YI+KP S+ + +K + Sbjct: 61 GFTVLKTLRQS---MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea ananatis AJ13355] Length = 245 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + A+ + PD+I++D L S Sbjct: 17 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGS 76 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S M IK + Sbjct: 77 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 136 Query: 121 GE 122 Sbjct: 137 RR 138 >gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L RD +E SG+ +G LE A + D++I+D+ L + G Sbjct: 1 MSRILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI +++++ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICREVRQK---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 233 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EAL+ PD+I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ ++P+I ++A D+ + G + YI KP + ++ + Sbjct: 65 QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRR 121 >gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 233 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EAL +PD+II+D+ L I G Sbjct: 5 QKILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ ++P+I ++A D+ + G + Y+ KP + ++ + Sbjct: 65 QVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRR 121 >gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + + + + +E GYI + +G EA+++A++ PD+II+D+ L ++ Sbjct: 1 MSSKILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K +++ +P++ +TA + D+ + G + YI+KP S+ + +K + Sbjct: 61 GFTVLKTLRQS---MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB [Saccharophagus degradans 2-40] Length = 234 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D + R +E + Y L+ + +A L KPD+I++D L SG+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D EIP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 >gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103] gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103] Length = 245 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + A+ + PD+I++D L S Sbjct: 17 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLIEPWPDLILLDWMLPGGS 76 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S M IK + Sbjct: 77 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 136 Query: 121 GE 122 Sbjct: 137 RR 138 >gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +E SGY +G EA E+ ++KPD++++DI L + G++ Sbjct: 7 KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHVDGID 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+++ E PVI +TA D+ + G + YI KP + +K + Sbjct: 67 VLKWIRKEYET---PVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRR 122 >gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 70/121 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D E ++L + +E +G+ L + NG E++EL + + D+I++D+ L I G+ Sbjct: 4 KNILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLMLPGIDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ + + P+I +TA + D + G + Y++KP S+ + IK + Sbjct: 64 EVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +++ + +E GYI + +G EAL++A++ PD+II+D+ L ++ Sbjct: 1 MTHRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + +++ IP++ +TA + D+ + G + YI+KP S+ + +K + Sbjct: 61 GFSVLRTLRQS---MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20] gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 235 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + + GY + +G EAL L KPD++++D L EI G Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +QI+ SE PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 VEVLRQIRSKSET---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 >gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis Antiqua] gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis FV-1] gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92] gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates Pi uptake (OmpR family) [Yersinia pseudotuberculosis IP 32953] gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CO92] gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pseudotuberculosis IP 31758] gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D +L +K + +E G+ +G EAL + +K DV+++D+ L + Sbjct: 1 MNSKILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLPKYD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + ++E IP+I +TA D+ + G + Y++KP ++ IK + Sbjct: 61 GLQVCQLVRE---FSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D E + L + +E G+ +G AL+ A D I++D+ L E+ Sbjct: 1 MAQHILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ KQ++++ + P++ +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 GLEVCKQLRQNKIM--TPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +AL+ A ++PD++++DIQ+ + GL Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + P++ +TA GD G + Y+ KP L I+ + Sbjct: 71 TAARRIRATGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|153868898|ref|ZP_01998627.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074527|gb|EDN71372.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 378 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++V+D N+++ ++ GY RNG +AL +AR PD+I++DI + E+ Sbjct: 1 MKPETILVVDDLADNLRVLIGILSQQGYKVRPARNGQQALLMARTSPPDLILLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +Q+K D + IP+I ++A D+ + G YI+KP + ++ + Sbjct: 61 DGYEVCQQLKADQKTHHIPIIFISALNEVLDKIKAFSLGAVDYITKPFQAEEVLARVETH 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6] gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D +L R + GY + +G EALE A +P+VI++D+ L + Sbjct: 1 MSERILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ ++P+I ++A + D+ G + Y+ KP + + I+ + Sbjct: 61 GLEVCRRIR---GWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVAL 117 Query: 121 GEA 123 + Sbjct: 118 RHS 120 >gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L + +E G+ +R+G+ AL++ + PD+II+D+ + + GLE+ Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 63 CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121 >gi|297517635|ref|ZP_06936021.1| transcriptional regulator PhoB [Escherichia coli OP50] gi|6573458|pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli gi|6573459|pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli Length = 127 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Pestoides F] Length = 229 Score = 167 bits (425), Expect = 4e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] Length = 229 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E GY ++ + +ALE + P++I+MD L S Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K + Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 217 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++VED +L +D + GY + +GM+ALE+ ++ D++I+DI L ++ G Sbjct: 1 MKKILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ +S +PVI +TA + + D+ + + YI+KP + + + IK Sbjct: 61 WSVCREIRRESM---VPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 232 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +IV+D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 239 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + R +E G + NG EALE R PDV+++DI + + G E Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ +PV+ +TA + D + + G + YI KP S + I+ + Sbjct: 69 LRRLRQ---ASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123 >gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911] gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911] Length = 237 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D + + L ++ +GY + +G + A Q +PD+I++D+ L +++ Sbjct: 1 MDKKVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ++++ P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKQLRQEKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1347 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 45/122 (36%), Positives = 73/122 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++ EDNE+N D + GY G EAL++A + +PD+IIMDIQ+ + G Sbjct: 1222 SRRILLAEDNEVNRVTLSDYLVAQGYEVRVACQGKEALQIAAEWRPDLIIMDIQMPGLDG 1281 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ D+ P+IAVTA AM GD ER G Y +KPI L +E I++++ Sbjct: 1282 LEVIQRLRADAAFAATPIIAVTALAMPGDRERCLSAGANDYFAKPIRLRQLVERIEQFLA 1341 Query: 122 EA 123 + Sbjct: 1342 SS 1343 Score = 95.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ +E + G A+E + +PD+I++D+Q+ + SG EI Sbjct: 1096 LIIEDSATTADQLARYLEELQIQPVICSYGKGAVEQVQALRPDLILLDVQMPDRSGWEIL 1155 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ D +L+++PVI V+ R G AY+ KPI+ + + + Sbjct: 1156 ADLRRDPDLRQVPVIIVSVVDEPE---RGLAAGAAAYLVKPINRLMLRRALSQI 1206 >gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 229 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY ++ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ +EIPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 237 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 70/118 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++L + ++++GY + +G EAL AR P++II+D+ + E+ GLE Sbjct: 14 KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K ++ D+ + IP+I +TA A + D + G + Y++KP S + +K+ + Sbjct: 74 VCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLR 131 >gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++V+D L +K R +E GY L +G EAL+ + D+II+D+ L +I Sbjct: 1 MVYKLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I++ + P+I +TA + + G + Y++KP ++ IK + Sbjct: 61 GLEVCQTIRQ---TSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 226 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++I +D L +L D + GY L+ +G +AL++ + KPD++++D+ + G Sbjct: 1 MERILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVMMPGYDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ +P+I +TA + D+ G + YI+KP S + + +K + Sbjct: 61 WTVCREIR---RTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 229 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + +V++V+D + ++ + GY + +G EAL + D+I++D+ + ++ Sbjct: 1 MSRLRVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + ++I++ + ++P+I +TA + D + G + Y+ KP S + IK Sbjct: 61 DGITVCQEIRK---VSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri VA-6] Length = 229 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLLGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 458 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N+KL ++ Y + +G EA++L + +PD+I++D+ + ++S Sbjct: 1 MTAKILVVDDIPSNVKLLEAQLKAEYYTVIVAYDGEEAIDLVAEQQPDIILLDVMMPKMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K++K D IP+I VTA D G + +++KPI + IK + Sbjct: 61 GFEVCKKLKNDPLTTYIPIIMVTALHDTHDRVEGINAGADDFLTKPIDETALSARIKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 51/113 (45%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+++ + ++++ + EAL++ + D+II D+Q + GL + Sbjct: 159 ILVVDEDTFQAEQIHNVLKQRFRSIKILHDPKEALKVGIKDNYDLIISDMQFSKTDGLRL 218 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + E + P++ ++ K + + G Y++ P+ S + + Sbjct: 219 CSKFRSKVETRYTPILILSEDYDKSNLVKALDVGANDYLTVPLDESELIARVN 271 >gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E GY ++ + ALE + P++I+MD L S Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKICEPYPELILMDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K + Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 236 Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED K+ + +E + L +G+ AL+L + +PD+II+D+ L ++ GLE Sbjct: 2 KILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQEPDLIILDLMLPKLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +I++ + ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 62 VCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLRRS 121 >gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + K++IV+D E ++L ++ SGY +G+EA+ +A++ KP++I++D+ + + Sbjct: 1 MTREKILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMIPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+IK+D E++ +I +TA + D+ + G + YI+KP S+ + +K Sbjct: 61 DGFDVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440] Length = 242 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 17 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 77 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 136 >gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL N1-067] gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL S4-171] Length = 238 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G EAL++A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|269104854|ref|ZP_06157550.1| putative DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268161494|gb|EEZ39991.1| putative DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 241 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++V+D++ +L + + SG+ + G E +PD+I++D+ + G Sbjct: 5 KKVLVVDDDQEIRELLDEYLTKSGFHVVTAAEGEEMKRKLAAGEPDLILLDVMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ ++P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 65 TLCQHIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121 >gi|113476774|ref|YP_722835.1| response regulator receiver protein [Trichodesmium erythraeum IMS101] gi|110167822|gb|ABG52362.1| response regulator receiver protein [Trichodesmium erythraeum IMS101] Length = 121 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 70/121 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED+ ++ L++ SG +G+EAL + KPD++++DI + +++G Sbjct: 1 MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++IK D + + IPV+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YEVCRRIKSDPQTKHIPVVMCSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] Length = 230 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ +++ +E +G+ L +G+ A+ +Q PD+I++DI L E+ Sbjct: 1 MPARILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ SE +P++ +TA + D + G + Y++KP S + IK + Sbjct: 61 GLEVCREIRKISE---VPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio shilonii AK1] Length = 1128 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G+E L++ KPD++++DI + +SG E+ Sbjct: 725 LVADDEPVNLRILESFLRLEGYQVKLAKDGLETLDIIEHEKPDLLLLDIMMPGMSGFEVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI----- 120 + I+E + +P+I +TA D R + G Y++KP S I ++ Sbjct: 785 ETIREQYDHAALPIIMLTALNQSEDRVRGFELGANDYLAKPFSKPELAARIAAHLQASKA 844 Query: 121 --GEA 123 A Sbjct: 845 EERRA 849 >gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 244 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +ALE A ++PD++++DIQ+ + GL Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + P++ +TA GD G + Y+ KP L I+ + Sbjct: 71 TAARRIRATGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 229 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 243 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + R +E G + NG EALE R PDV+++DI + + G E Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ +PV+ +TA + D + + G + YI KP S + I+ + Sbjct: 69 LRRLRQ---ASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123 >gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT] gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 230 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +L + GY +G++AL + R KP ++I+D+ + I G E Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+ +S +P++ +TA + + D+ + G + Y+SKP + + +K + + Sbjct: 65 LCRLIRAES---SVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRS 121 >gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 234 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L R+ +E + ++G +ALE+ Q +PD+II+D+ L + GLE+ Sbjct: 3 ILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLMLPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 63 CTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRRS 121 >gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555] gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016] gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM 555] gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +E++GY +G A ++KPD++I+DI L I G++ Sbjct: 7 KILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPNIDGID 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++D E PVI +TA D+ + G + YI KP + IK + Sbjct: 67 VLKWIRKDYET---PVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRR 122 >gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda ATCC 23685] gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda ATCC 23685] Length = 237 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + AL + PD+I++D L S Sbjct: 9 MARRILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLCEPYPDLILLDWMLPGGS 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K + ++IPV+ +TA + D R + G + YI KP S + IK + Sbjct: 69 GIQLIKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVM 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|262199700|ref|YP_003270909.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262083047|gb|ACY19016.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 397 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N+ + + ++ GY L +G EA+ELA + +PD+I++D+ + I G E Sbjct: 22 VLLVDDNPANLAVLFEHLDEHGYRVLVAEDGSEAVELASRIQPDIILLDVMMPGIDGFET 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IGE 122 +Q+K S L +IP+I +TA D+ + G Y++KP + ++ + + Sbjct: 82 CRQLKSHSTLSDIPIIFMTALTDTRDKVEGFRAGAVDYVTKPFQHREVLARVRTHVVLRR 141 >gi|24987831|pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From Bacillus Subtilis Length = 136 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 70/123 (56%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E + L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 62 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 119 Query: 121 GEA 123 + Sbjct: 120 RRS 122 >gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ + +G+ Q +G AL A PD++++D+ L + GLE Sbjct: 9 RVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLMLPGMDGLE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 69 VCRALRGRGP---VPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124 >gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] Length = 243 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + + +E GY + +G+ A+++A + +PD+I++D+ L + Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] Length = 229 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E +GY ++ + A+ + P+++++D L S Sbjct: 1 MAKRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 230 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + + + + +E GY + +G +AL + D++++D+ L ++ Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVMLPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+++E E+P+I +TA A + D+ + G + YI+KP + + I+ Sbjct: 61 DGFTVCKKVRE---FSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +++ + +E GYI + +G EAL++A++ PD+II+D+ L ++ Sbjct: 1 MSYRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + +++ IP++ +TA + D+ + G + YI+KP S+ + +K + Sbjct: 61 GFSVLRTLRQS---MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea] Length = 247 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D +L + GY + +G EAL + R+ P++I++DI + ++ G Sbjct: 12 TILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFG 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+++S +IP+I +T D + G + Y+ KP S IK + + Sbjct: 72 VCQEIRKES---DIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRS 128 >gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] Length = 229 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED ++ +E+ GY + NG EA+ L + PD++I+D + +SG+E+ Sbjct: 8 ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K + + IPVI ++A + + D R + G + Y+ KP S+ M ++ + Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRR 125 >gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 234 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 70/119 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E ++L + + +GY + NG++AL++A+ P +I++D+ L + G + Sbjct: 5 KILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLMLPGLDGFD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++K++ E Q I +I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 65 VCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 >gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 246 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED KL + GY +G EA ++ D+II+D+ L + G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ +S L IPVI +TA + + ++ + G + Y++KP S + +K + Sbjct: 61 LEVCRKIRGNSSL-HIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLR 119 >gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 230 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + L ++ GY+ +G EAL +A + PD++I+D L ++S Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ SE + +P+I +TA + D R G + Y+ KP S+ ++ + Sbjct: 61 GIEVCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 236 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VED + +E Y +G EALE +H D++I+D+ L + G Sbjct: 5 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++S ++P+I +TA D + G + Y+ KP S + ++ + Sbjct: 65 ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] Length = 229 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ +E G+ L+ NG EAL + + PD+I++D + +SG+E Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K +E + IP+I ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 67 VCRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125 >gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582] gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582] Length = 229 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D R +E Y ++ NG+EAL+ R+H PD++++D+ + E+ G E Sbjct: 12 TILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVMMPEMDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K I+E + +PV+ +T + D+ R G + YI+KP S + I+ + + Sbjct: 72 TLKAIRE---VSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRRS 128 >gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 238 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G EAL++A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] Length = 229 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + AL PD++++D + S Sbjct: 1 MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ+K + ++IP+I +TA + D+ + + G + Y+ KP S + +K + Sbjct: 61 GIQVIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 229 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+V++V+D+ L++K+ + GY +G+E L L Q +PDV++ D+ + E+ G Sbjct: 1 MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E +Q+++ + +P I +++ D + + G + YI KP + I+ I Sbjct: 61 FEFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQIE 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 225 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++I++D E+ +K + +E G+ +G E LE R D++I+DI L ++ G Sbjct: 1 MERLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ IP+I +TA D + G + Y++KP + + I+ + Sbjct: 61 FSVCREIR---TFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 227 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++M+VED E +L ++ G+ + +G +AL+L ++ D++I+D+ L + G Sbjct: 5 RIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVMLPNVDGWT 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI++ ++P+I +TA + D+ G + Y+ KP S + +K + + Sbjct: 65 VCRQIRQ---GSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRS 121 >gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +IV+D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] Length = 232 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++++ED E L +E +GY T NG + L++AR+ +P++II+D+ L + Sbjct: 1 MKKSKILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIAREEQPELIILDLMLPHM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +++K+D +L++I VI VTA + + D + G + Y+ KP S+ + IK Sbjct: 61 DGLEVCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED + + R +E GY L +G + + A PD++++D+ L ++ Sbjct: 1 MAKNILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ S +P++ +TA + D+ + G + YI+KP + + +K + Sbjct: 61 GFQVCRKIRASS---SVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] Length = 240 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D L + +E +G+ +G + A++ D+II+D+ L + Sbjct: 1 MAKRILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +Q++++ +P++ +TA + D+ + G + Y++KP S ++ + Sbjct: 61 GMDVCRQLRQEQIF--VPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + MEAL+L + + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + IP+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115] gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355] gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 233 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY L +G EALE+ +PD++I+D+ L E+ G Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea vagans C9-1] gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea vagans C9-1] gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 229 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + A+ + PD+I++D L S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S M IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 243 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EA++ PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 235 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D + L + +E + Y + +G +AL LA K DVI++D+ L ++ G Sbjct: 1 MSRVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+++++ + P+I +TA + D + G + YI+KP S + +K + Sbjct: 61 VEVTKRLRQEKV--KTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] Length = 229 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E G+ + NG EA+ L + PD+I++D + +SG+E+ Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K SE + IP+I ++A + + D R + G + Y+ KP S+ M ++ + Sbjct: 68 CRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRR 125 >gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] Length = 235 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G K+++ + ++IP+I +TA + + D+ + G + Y++KP S + IK + Sbjct: 61 GATFAKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] Length = 235 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN+ + D + +G+ L NG + + PD+II+DI + G Sbjct: 4 KRILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTLQHTTPDLIILDIMMPGEDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+++DS+ IP+I +TA + D + G + YI+K S + IK + Sbjct: 64 CLCRQLRQDSQ---IPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 243 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + + +E GY + +G+ A+++A + +PD+I++D+ L + Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|269928581|ref|YP_003320902.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787938|gb|ACZ40080.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 ++K V++ +D+ ++L R ++ GY + NG EA+E+ + +PD++I+D+ + + Sbjct: 1 MRKDLVLVADDDAPILRLVRTKLQADGYSVVTAMNGREAVEIFERERPDIVILDLMMPVM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E ++I++ S PVI +TA + + D+ R G + Y++KP S + Sbjct: 61 DGFEAMQRIRQMS---NAPVIMLTARSGQADKIRGLDLGADDYVTKPFSPDELSARVAAV 117 Query: 120 IGEA 123 + A Sbjct: 118 LRRA 121 >gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601] gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601] Length = 237 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + G+ +G EAL+L + +PD+I++DI L G+ Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDGV 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 227 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D + ++ + +E G+ + T +G AL + PD+II+D+ L EIS Sbjct: 1 MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+++S +P+I +TA D+ + G + Y++KP + +K + Sbjct: 61 GWDVCREIRKES---HVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 230 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ ++ +E +G + +G + L + PD+I++DI + E+ Sbjct: 1 MAATILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE ++I++ E+P++ ++A + D + G + Y++KP S + + + Sbjct: 61 GLETCRRIRK---TSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 321 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D+ L ++ + +G+ + +G AL +A PD++++D+ L + G+ Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PVI +TA A + D + G + Y++KP S ++ + Sbjct: 116 EVFRRLRAH---RPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR 172 Query: 123 A 123 A Sbjct: 173 A 173 >gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24] gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24] gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24] Length = 280 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D+ ++ ++ +GY + +G EAL A H+PD++++D+ L + GL Sbjct: 53 ARILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGL 112 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 113 EVCRRLRGQGP---VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 167 >gi|153873722|ref|ZP_02002207.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152069810|gb|EDN67791.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 299 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M+ K +++V+D N+K+ ++ + L +G ALE PD+I++D+ + Sbjct: 140 MMPKRPKILLVDDMPANIKVLFTFLKKQNFELLIAEDGEMALESVLWDHPDLILLDVMMP 199 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G E+ +++KE+ + ++IPVI +TA + D+ + K G YISKP + + IK Sbjct: 200 KMDGFEVCQRLKENEKTKDIPVIFMTALSDTIDKIKGFKLGAVDYISKPFDVEEVLLRIK 259 Query: 118 KYI 120 ++ Sbjct: 260 THL 262 >gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] Length = 229 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E GY ++ + +ALE + P++I+MD L S Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K + Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] Length = 233 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L PD+I++D L S Sbjct: 1 MASTILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + ++ D Q+IP+I +TA + D+ + G + YI+KP S + IK + Sbjct: 61 GLSLARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 252 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L +E G+ G EA + PD++++D L +SGLE Sbjct: 25 RILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLE 84 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++I+ + + +P+I +TA + ++ R G + YI KP S+ M ++ + + Sbjct: 85 ICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRRS 144 >gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] Length = 242 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D+ ++ ++ +GY+ + +G AL A H PD++++D+ L + GL Sbjct: 12 ARVLVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLMLPGMDGL 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 72 EVCRRMRGRGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +++ + +E GYI + +G EAL++A++ PD+II+D+ L ++ Sbjct: 1 MTHRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + +++ IP++ +TA + D+ + G + YI+KP S+ + +K + Sbjct: 61 GFSVLRTLRQS---MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D + + G+ L +G + L+ A+Q PDV+I D+ + + G Sbjct: 15 ARILLVDDEPGIRTAVQAYLNDEGFDVLTAIDGEDGLQKAKQFMPDVVITDVMMPQCDGY 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +Q++ED L PVI +TA M D + + G + YI KP + +K + Sbjct: 75 ELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELVARVKNVVKR 134 >gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 253 Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +GMEALE R+ PD++++D+ + ++ G Sbjct: 15 TILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMPKLDGYG 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 75 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130 >gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Cupriavidus metallidurans CH34] Length = 235 Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G K+++ + ++IP+I +TA + + D+ + G + Y++KP S + IK + Sbjct: 61 GATFAKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] Length = 240 Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+ +L ++ + +GY +NG E PD+I++DI L G Sbjct: 5 KRILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQYPDLILLDIMLPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K +++DS +P+I +TA + + D+ + G + YI+KP S + I+ + Sbjct: 65 TLCKYVRQDS---SVPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLRR 121 >gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 225 Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++I++D E+ +K + +E G+ +G E L+ R D++I+DI L ++ G Sbjct: 1 MERLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ IP+I +TA D + G + Y++KP + + I+ + Sbjct: 61 FSVCREIR---TFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 240 Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ +G +AL +A +PD++++D+ + + G Sbjct: 12 ARLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPGLDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 72 GVVRRLRESG--RHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRR 129 Query: 123 A 123 + Sbjct: 130 S 130 >gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 763 Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE+N + +L+ + G+ NG+EALEL ++ D++ MDI + + GLE Sbjct: 535 ILVVEDNEVNQMVLSNLLRSQGHQVEVAANGVEALELLDKNNYDLVFMDILMPVMDGLET 594 Query: 65 TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+E E+ IP+IA+TA A+ GD E+ G + Y++KP+ + + I K I + Sbjct: 595 TRRIREQEEITGFHIPIIAITAHAIHGDREKFLAAGMDDYLAKPVQMEELNQAISKIIKK 654 Query: 123 A 123 A Sbjct: 655 A 655 >gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY ++ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 233 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY L +G EALE+ +PD++I+D+ L E+ G Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + I++ +P+I ++A + D+ + G + Y++KP S + +K + Sbjct: 61 LDVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|313884444|ref|ZP_07818205.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620228|gb|EFR31656.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 273 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++IV+D + L ++ +GY Q +G+ A E+ Q+K D II+D+ L + G Sbjct: 1 MEHILIVDDEPSILTLLAYNLQQAGYQVDQADDGLLAYEMIEQNKYDFIILDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I +++++ + ++P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 MDICRKVRK--KGSQVPILMLTAKDEEYDKVVGLELGADDYMTKPFSPREVLARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563] Length = 255 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+IV+D + + L + +E GY +Q +G LELA H+ D II+D+ L ++ G Sbjct: 1 MKKVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ K ++++ P++ +TA + ++ + G + Y++KP S + +K + Sbjct: 61 MDVCKNLRQNKI--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36] gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36] Length = 228 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ +E G+ ++ + EA++ + P++I++D L S Sbjct: 1 MSKRILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLVEPYPNLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K L IPV+ +TA + D+ + + G + YI+KP S + + + Sbjct: 61 GIKYIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 782 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 64/115 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN++N + L++ G+ NG ALE + D+++MD Q+ + G E Sbjct: 657 ILLVEDNQVNQLVASSLLKKLGHRVDHAENGRRALEALQNKTYDLVLMDCQMPVMDGYEA 716 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+++ + Q +PVIAVTA M+GD E G YI+KP + I ++ Sbjct: 717 TRAIRQNPQWQTLPVIAVTANVMQGDREDCLASGMNDYITKPYNRDELRAVIARW 771 >gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293] gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293] Length = 218 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ + D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 240 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+E +L + +G+ + +G +AL L + PD++++D+ L + G E Sbjct: 12 TILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLPGLDGGE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ D + +P++ +TA + + G + YI+KP S I + +K + Sbjct: 72 VCKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRR 130 >gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] Length = 240 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++IV+D + +E +G+ LQ N +A ++PD++++D + Sbjct: 8 MPKHRILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMPGT 67 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GLE+ +++K D + P+I +TA A + + G + YI KP S + + Sbjct: 68 TGLELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAV 127 Query: 120 IGE 122 + Sbjct: 128 LRR 130 >gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] Length = 228 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+ +++VED ++ R +E G+ +Q NG EAL ++ PD+I++D L Sbjct: 1 MMPTPTILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+EI +Q+K + + IPVI ++A + + D+ R + G + Y++KP S+ M +K Sbjct: 61 VSGIEICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKS 120 Query: 119 YIGE 122 Sbjct: 121 QFRR 124 >gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] Length = 234 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 6 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 66 GIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 229 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] Length = 233 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D + + + + GY L +G EALE+ PDVII+D+ L EI G Sbjct: 1 MKRILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|319940657|ref|ZP_08015000.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis 3_1_45B] gi|319806023|gb|EFW02781.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis 3_1_45B] Length = 241 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D +L ++ GY +G+EA++ + PD++++D+ + + Sbjct: 1 MNKRILLVDDERNLNQLIATNLKFEGYETESAYSGIEAIDKLGRFSPDLVVLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + ++ IPVI +TA D R G + Y+ KP ++ I+ + Sbjct: 61 GFEVLEHLR---HASSIPVILLTAKNRVDDRIRGLTLGADDYLGKPFAIDELTARIEAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Angola] gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis Angola] Length = 230 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 2 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 62 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 121 Query: 121 GE 122 Sbjct: 122 RR 123 >gi|330503901|ref|YP_004380770.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328918188|gb|AEB59019.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 773 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ GY L +G EALE+ Q D+++MD + + G Sbjct: 650 ARVLLVEDNPVNQMVAKGMLTKLGYQVLVAGHGGEALEILEQQPVDLVLMDCNMPVMDGY 709 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I+ + E+P++A+TA A+ + ER R G Y++KP + ++ Sbjct: 710 EASRRIRSNGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDAWL 767 >gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum LMG 18811] Length = 235 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + + GY + +G EAL + + KPD++++D L EI G Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +QI+ SE PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 VEVLRQIRSKSET---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 >gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L + G Sbjct: 1 MPRILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D EIPV+ +TA + ++ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] Length = 249 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ ++L +E SGY + +G++ LA Q PD+I++D+ L + Sbjct: 1 MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++ D EIPV+ +TA D+ G + Y++KP + + ++ + Sbjct: 61 GFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 232 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++L + + GY + +G++ALE+ + K D++I+DI + + G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+I+ + + + +PVI ++A + + D+ + G + YI+KP S+ + +K + Sbjct: 61 YEILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 233 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY + +G EALE+ PD++I+D+ L E+ G Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+E +K+ +E GY + R+G EA++ ARQ PD++++D+ L + G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ ++P+I +TA + D + G + Y+ KP S + ++ Sbjct: 62 VCKEIR---RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR 117 >gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1651 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 61/113 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN + ++ +G+ +G ALE ARQ +PD+++ D+ + + G Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + ++ D EL++ PV+ ++A A + + G + Y++KP S + + Sbjct: 721 LLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773 Score = 75.2 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61 V++VED+E +++ GY L+ ++ AL + P DV+ D+ + + Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++ +E L I V+ + + G +SKP + I+ + Sbjct: 1438 TELARKARE--RLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+EL +L+ + L+ +A ++ +H V++ D+ L SG++ Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1595 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++ ++ VI +T + + E+ + + KP L ++ +K + Sbjct: 1596 LALEVCA--GRPDLRVIFLTGYDLVLTPEQRKVLPHAILLRKPYDLLDLIDALKTPLR 1651 >gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] Length = 229 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E GY A++ + ALE + P++I+MD L S Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K + Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 236 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 65/120 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E L + GY ++ +G ALE+ + PD+II+D+ L + G E Sbjct: 5 KILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPIMDGWE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K+D ++IP+I +TA + D + G + Y+ KP SL+ IK + A Sbjct: 65 VCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRA 124 >gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 233 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY + +G EALE+ PD++I+D+ L E+ G Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|257487351|ref|ZP_05641392.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626864|ref|ZP_06459818.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649144|ref|ZP_06480487.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. 2250] gi|320322868|gb|EFW78959.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. B076] gi|320329823|gb|EFW85811.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. race 4] gi|330867867|gb|EGH02576.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874323|gb|EGH08472.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. glycinea str. race 4] gi|330988064|gb|EGH86167.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009049|gb|EGH89105.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 245 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 229 Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY ++ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D L + + G+ + +G EA+ L + D++++D+ L + G Sbjct: 1 MPKILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I K+I++ ++PVI +TA + D + G + YI KP S + +K + Sbjct: 61 LTICKEIRK---FSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 233 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY L +G EALE+ PD+II+D+ L EI G Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D++ ++ ++ GY + +G ALE + +PD++++D+ L + G+E Sbjct: 9 RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +S +P+I +TA D + G + Y++KP + IK + + Sbjct: 69 VCRRLRRESG---VPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRS 125 >gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] Length = 229 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED ++ E GY NG AL + PD+I++D L +SG+E Sbjct: 7 HILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWMLPGVSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +QIK +E + IPVI ++A + +GD+ R + G + Y++KP S++ + + + Sbjct: 67 ICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRR 125 >gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] Length = 234 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G AL P++I++D+ L + G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I++ S +P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCREIRQKS---NVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRR 121 >gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL F2-208] gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL N1-067] gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL S4-171] Length = 237 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + G+ +G EALEL + +PD+I++DI L G+ Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39] gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39] Length = 229 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D ++L ++ GY NG E + +A++ PD+II+DI + ++ G+ Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++ E + ++ +TA + + E G + YI+KPI + I + Sbjct: 66 EACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRR 125 >gi|302866838|ref|YP_003835475.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503253|ref|YP_004082140.1| response regulator receiver modulated diguanylate cyclase [Micromonospora sp. L5] gi|302569697|gb|ADL45899.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409872|gb|ADU07989.1| response regulator receiver modulated diguanylate cyclase [Micromonospora sp. L5] Length = 318 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+E + + G+ L +G EALE+ + +PD+ ++D+ + I GLE+ Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGFEVLHAADGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ D +PVI +TA M D+ G + Y+ KP + + + Sbjct: 71 TRRLRADPMTSALPVIMLTAKGMTQDKVNGLSVGADDYLVKPFDTLELVARVNSTLRR 128 >gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio coralliilyticus ATCC BAA-450] gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio coralliilyticus ATCC BAA-450] Length = 1128 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + GY +NG EA+E KP+++++DI + +SG ++ Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKNGEEAVESVVHEKPELMLLDIMMPGMSGYQVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++D + ++PVI +TA D R + G Y+SKP + I ++ Sbjct: 785 EVLRKDYDHAQLPVIMLTALNQPDDRVRGFEAGANDYLSKPFNKQELAARITAHL 839 >gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1] gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1] gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 229 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 >gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 235 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + + GY + +G EAL + KPD++++D L EI G Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +QI+ SE IPVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 VEVLRQIRSKSE---IPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 117 >gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus] Length = 267 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ + +GY Q +G AL H+PD++++D+ L + G E Sbjct: 19 RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPAMDGFE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++E +PVI +TA + D + G + Y++KP S + + + Sbjct: 79 VCRRMREHGP---VPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVL 132 >gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +IV+D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 228 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D++ R + +GY NG E L++A + PD++I+D + ++ G+E+ Sbjct: 6 ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+++ IP++ +TA D + + G + Y+ KP + + +K + A Sbjct: 66 CKRLRSAD---NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRA 121 >gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] Length = 233 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL D++++D+ L I G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 61 TTLCRRIREQSR---VPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator [Plautia stali symbiont] Length = 229 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + A+ + PD+I++D L S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S M IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 232 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E G +G EAL+LA + D+I++D+ L ++ Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+E +P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQSIRE---FSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 235 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++IVED E + + GY G E LEL + D++++D+ L + Sbjct: 1 MMTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E S +P+I +TA + + D+ + G + YI+KP S + I+ + Sbjct: 61 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 226 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK ++V+D ++ +K + +E I +G EAL+ AR ++ D+I++D+ L ++ Sbjct: 1 MSKKALVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPIMT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQQIRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] Length = 235 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ L+ + +A L PD++++D L + Sbjct: 1 MSSTILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAELPDLVLLDWMLPGKT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ +++ + +PVI +TA + D+ + G + YI+KP S + IK + Sbjct: 61 GIQFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 228 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++V+D K+ +E G+ +G ALE +P +II+DI L ++ G Sbjct: 5 TRRILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLPKLDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ S ++P++ +TA + D + G + Y++KP ++ + ++ + Sbjct: 65 TEVCRRIRAQS---DVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMR 121 Query: 122 EA 123 A Sbjct: 122 RA 123 >gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 229 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D ++ + Y + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ ++++ +E+P+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 230 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D ++ +E + Y L+ + EA L PD++++D L SG+ Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKHPDLVLLDWMLPGTSGV 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K++ +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 229 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY ++ + A+ + P+++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VED + +E Y +G +ALE +H D++I+D+ L + G Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++S ++P+I +TA D + G + Y+ KP S + ++ + Sbjct: 68 ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7] gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7] Length = 223 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D + +L + G+ L+ NG EALE+ D+ I+D+ + + Sbjct: 1 MKAKVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +KE +++PVI +TA D+ R G + Y+ KP + M ++ + Sbjct: 61 GFELVENLKE---FKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM B1551] gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM B1551] Length = 238 Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + +L + +E GYI + +G EA+E A D+I++D+ + I G+ Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ KQI+E + P+I +TA + + + + G + YI KP S + +K + Sbjct: 65 EVCKQIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 233 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++V+D E + + + +E Y + +G EA++L ++ ++I+D+ L + Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ISG E+ +I+E + +I +TA + D+ G + Y++KP S+ + +K Sbjct: 61 ISGEEVCSKIRE---FSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKA 117 Query: 119 YIGEA 123 I A Sbjct: 118 LIRRA 122 >gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct] Length = 230 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLRR 123 >gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 238 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + R +E G NG EAL+ AR PDVI++D+ + + G E Sbjct: 9 VLVVDDEPRMINFMRLNLELEGMRVATAANGREALDRARDDMPDVILLDVMMPVMDGFEA 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ ++P++ +TA + D R + G + YI KP S + I+ + Sbjct: 69 LRRLRQ---FSQVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRR 123 >gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 230 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + + + + +E GY + +G +AL + D++++D+ L +I Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVMLPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+++E ++P+I +TA A + D+ + G + YI+KP + + I+ Sbjct: 61 DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] Length = 229 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG+ Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 >gi|66044362|ref|YP_234203.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255069|gb|AAY36165.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 245 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 229 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D +K R +E G+ +G EAL R D+I++D+ L + G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ P+I +TA A D+ + G + YI+KP + + I+ + Sbjct: 61 LTICREVRAAGMT---PIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] Length = 239 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130 Query: 121 GE 122 Sbjct: 131 RR 132 >gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY L +G EALE+ PDVII+D+ L EI G Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 224 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ +L + G+ + NG +AL + K D++I+DI + EI G Sbjct: 1 MPRILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIMMPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ I++ +IP++ +T D+ + + G + Y+ KP + +K + Sbjct: 61 WQLCHNIRKY--YGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 235 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D + + + +E GY + +G EA+E+ +H+PD+I++DI L G+ Sbjct: 4 QKILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQDGM 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKKF---DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRR 120 >gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] Length = 234 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I ED+ L +E +G+ L +G+ ALE+AR+ KP++I++D + + G Sbjct: 1 MATILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDKPELILLDQMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ DS Q IPVI +TA A D + + G + Y++KP S + + + Sbjct: 61 HGVLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVLK 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] Length = 229 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED ++ +E+ G+ + NG EA+ L + PD+II+D + +SG+E+ Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K + + IPVI ++A + + D R + G + Y+ KP S+ M ++ + Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125 >gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B] Length = 235 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN + D + +G+ L NG +L H PD+II+DI + G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA + D + G + YI+K S + IK + Sbjct: 64 TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911] gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911] Length = 238 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L + +E Y+ + +G EALE A + DVI++D+ + G+E Sbjct: 6 KILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PVI +TA + + + + G + YI KP S + +K + + Sbjct: 66 VCRELRER---KATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRS 122 >gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 232 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I +D +K ++ G+ NG +AL + +PD++++D+ + ++ G Sbjct: 4 KKILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVMMPKMDGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+E S +P+I +TA D+ G + Y++KP + + I+ + Sbjct: 64 EVCRKIREQS---NVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRR 120 >gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + +EAL+L + + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y++KP + + +K + Sbjct: 61 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|186683295|ref|YP_001866491.1| response regulator receiver protein [Nostoc punctiforme PCC 73102] gi|186465747|gb|ACC81548.1| response regulator receiver protein [Nostoc punctiforme PCC 73102] Length = 125 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + ++ GY +G A++ + PDVI++D+ L E+ G Sbjct: 1 MPHVLLVDDEAALCESLTYTLQKEGYTVTTAADGHSAIKQFHKQVPDVILLDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +I+ +P++ +TA D+ + G + YI+KP + + IK + Sbjct: 61 MEVCWRIRA---FSNVPIVMLTAKDEDIDKIWGLEAGADDYITKPFNTRELLARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] Length = 248 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 63/117 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED E ++L + +++ GY +G AL + + +PD++++D L ++SG+E+ Sbjct: 24 LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +P+I +TA + D R G + YI KP S++ I+ + Sbjct: 84 RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRR 140 >gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium thermophilum] Length = 242 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++I+ED+ + R +E G + T G L +H P++I++DI L + Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G EI ++++ + +P+I +TA + D+ G + YI+KP S+ M I Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|330974665|gb|EGH74731.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 193 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 280 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 48 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 107 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 108 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 164 Query: 121 GE 122 Sbjct: 165 RR 166 >gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] Length = 239 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130 Query: 121 GE 122 Sbjct: 131 RR 132 >gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 237 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++ + GY +G+EAL++ +PD+II+D+ + ++ G + Sbjct: 8 ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVMMPKLDGYGV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ S +P+I +TA + D + G + Y+ KP SL ++ + Sbjct: 68 CQAVRKASR---VPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRR 122 >gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 235 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D L R +E G+ + +G EALE R +PD++++DI L I G Sbjct: 2 RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGWA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +S ++P+I +TA D + G + Y+ KP + + I+ + Sbjct: 62 VCRILRRES---DVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117 >gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] Length = 228 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED + +E G+ +Q NG EA+ + + PD+I++D L +SG+E Sbjct: 6 TVLVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAVSGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K + + IP+I ++A + + D R + G + Y+ KP S+ M ++ + Sbjct: 66 VCRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 124 >gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 231 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +D ++ SG+ N E +L +Q PD++I D+ + ++ Sbjct: 1 MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + KQ++ED Q +PV+ +TA M D + + G +AY+ KP + I+ + Sbjct: 61 GYQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLL 120 Query: 121 GE 122 Sbjct: 121 TR 122 >gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 228 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++IV+D+E ++ + +E+SGY +G A ++KPD++++D+ L + Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K I+ DSE IPVI +TA D+ + G + YI KP + IK + Sbjct: 64 GIDVLKWIRRDSE---IPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] Length = 232 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +IV+D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17] gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17] Length = 230 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY+ LQ + A L +PD+I++D L SG+ Sbjct: 4 KTILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K+D IP+I +TA + ++ + G + YI+KP S + +K + Sbjct: 64 ELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|309790814|ref|ZP_07685358.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227101|gb|EFO80785.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 406 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D+ +N+K +E GY L+ +G ALE+A + PD++I+D+Q+ E Sbjct: 1 MAQRILVVDDSPINIKAVALALEAIGYEILEATDGRMALEVAAETLPDMLILDVQMPEFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++ P++ ++A + + + G + Y++KP +K + Sbjct: 61 GYEVCRRLRRQPAFMTRPILMLSANNALHERVQGLEAGADDYMAKPFEAEELQARVKALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|104780757|ref|YP_607255.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95109744|emb|CAK14447.1| putative sensor histidine kinase/response regulator hybrid [Pseudomonas entomophila L48] Length = 784 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G +G EALEL Q D+++MD + + G Sbjct: 663 ARILLVEDNPVNQLVAKGMLAKLGCQVQVAAHGAEALELLEQETFDLVLMDCNMPVMDGY 722 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E +++I++ E+P++A+TA AM + ER R G Y++KP + I + Sbjct: 723 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHW 779 >gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 229 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IV+D +L ++ + GY L T +G AL +AR PD+I++DI + + Sbjct: 1 MSKTILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +Q +++ ++ PVI +TA + D G + YI KP + I+ + Sbjct: 61 GYQFLRQFRQE---RQTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL F2-515] Length = 220 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + G+ +G EALEL + +PD+I++DI L G+ Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] Length = 229 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++V+D +L +K R +E G +G EAL+LA+++ D+I++DI L + Sbjct: 1 MSRRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKHD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+E ++P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQQIRE---FSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006] Length = 229 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY ++ + A+ + P+++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQLTEPYPELVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165] gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165] Length = 238 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G +AL +A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|71737172|ref|YP_273446.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557725|gb|AAZ36936.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 245 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030] gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030] Length = 235 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN + D + +G+ L NG +L H PD+II+DI + G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA + D + G + YI+K S + IK + Sbjct: 64 TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262] gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL J2-064] gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL J1-208] gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262] gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816] gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220] gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes str. Scott A] Length = 237 Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + G+ +G EALEL + +PD+I++DI L G+ Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 229 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ ++E + Y ++ + A+ + PD+I++D L S Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLIEPWPDLILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S M IK + Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + + + + GY + +G EA+E+A P++I++D+ L + Sbjct: 1 MGQKILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+++E P+I +TA + D+ + G + Y++KP + M IK + Sbjct: 61 GFQVCKKLREKLA---CPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus Kuenenia stuttgartiensis] Length = 230 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + L +E GY + +G ALEL++ +P +II+DI L ++ Sbjct: 1 MNETILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K++K D L + +I +TA + D R K G + Y++KP S + + + Sbjct: 61 GLEVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++L + +G+ L NG + L +AR+ + D++I+D+ L I G E Sbjct: 7 RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ SEL PV+ +TA + D + G + Y++KP S +K + A Sbjct: 67 VLRALRRHSEL---PVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRA 123 >gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 229 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D ++L ++ GY NG E + +A++ PD+II+DI + ++ G+ Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++ E + ++ +TA + + E G + YI+KPI + I + Sbjct: 66 EACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRR 125 >gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14] gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14] Length = 229 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E GY A++ + ALE + P++I+MD L S Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K + Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 248 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++V+D +K+ ++ +GY NG EALE + PD+I++D+ L ++ Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+ +S +P+I +TA + G + Y+SKP S I Sbjct: 61 DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 236 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K V++VED L + +E +G+ L +G L+ A + PD+I++D+ L ++ Sbjct: 1 MVKTVLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ IP+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCKELRRLRI--NIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 231 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + ++ ++ SG+ N E EL +Q+ PD++I DI + ++ Sbjct: 1 MSAQLLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDIMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + KQ+++D L +PVI +TA M GD + + G +AY+SKP + I + Sbjct: 61 GYQFLKQLRDDPRLASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLL 120 >gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 230 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + L ++ GY +G EAL LA + PD++I+D L ++S Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ +E + +P+I +TA + D R G + Y+ KP S+ ++ + Sbjct: 61 GIEVCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] Length = 229 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D ++ + Y + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ ++++ +E+P+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + +EAL+L + + D+I++D+ + + Sbjct: 1 MSDKILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ Q IP+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACLKIREE---QTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis alexandrii HTCC2633] gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis alexandrii HTCC2633] Length = 450 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N +L + + L ++G L+LAR KPDVI++DI + + Sbjct: 1 MSARILVVDDIETNRRLLEARLTAEYFDVLMAQDGPTCLDLARCEKPDVILLDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +++K D E + IPV+ VTA + D R + G + +++KP+ ++ + Sbjct: 61 GFETCRRLKADPETRHIPVVMVTALDQRSDRIRGLEAGADEFLTKPVDDVALFARVRSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 14 NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 + ++ GY + A+ AR D++I+D+ GL + +I+ D + Sbjct: 164 IARALPATLDAHGY-----GDPKIAISQARHA--DLVIVDLSSPRFDGLRLCARIRSDVD 216 Query: 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++P++ V K R G IS+P+ + Sbjct: 217 TRQVPLLGVVDEMDKRTMVRALDLGVNDVISRPLDPGELSARSATQLKR 265 >gi|330938965|gb|EGH42452.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330975743|gb|EGH75809.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 245 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] Length = 230 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E L +D +E SG+ +G L + D+II+D+ L + Sbjct: 1 MSKRILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +QI+ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 GFEICRQIRGQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 AR 119 >gi|302186956|ref|ZP_07263629.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 245 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 227 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ +++ GY + +G AL ++H PD++++D+ L + Sbjct: 1 MSSRILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+ + + P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GFDVCRAIR---RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 230 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R + G +G EAL +A+ + D+I++D+ L ++ Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+E ++P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQAIRE---FSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|330950929|gb|EGH51189.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 245 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +AL+ A ++PD++++DIQ+ + GL Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + P++ +TA GD G + Y+ KP L ++ + Sbjct: 71 TAARRIRGAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I++D E+ +K + +E G+ +G E L+ R D++I+DI L ++ G Sbjct: 1 MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ IP+I +TA D+ + G + Y++KP + + I+ + Sbjct: 61 FSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|158334336|ref|YP_001515508.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158304577|gb|ABW26194.1| two-component response regulator, putative [Acaryochloris marina MBIC11017] Length = 375 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ + L R +E GY +G E L A+Q P +II D + + G Sbjct: 1 MVKILIIDDDPITQLLLRRTLEKQGYQVTVASDGQEGLSKAQQLCPALIICDWMMPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +Q+K + +L I +T+ + D G + +++KPI +S ++ + Sbjct: 61 IGVCQQLKSNPQLSATFFILLTSRSDLEDRIAGLNAGADEFLTKPIDMSELRARVRAGLR 120 >gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 244 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL R PD++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQELRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122 >gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L ++ + + NG +AL + + D++++D+ L E+SG Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ D + PVI +TA + D+ + G + Y+ KP S + I + Sbjct: 61 EEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus 16] gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus 16] Length = 235 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN + D + +G+ + NG E + ++H PD+II+DI + G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHTPDLIILDIMMPGDDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ DS+ IP+I +TA + D + G + YI+K S + IK + Sbjct: 64 TLCQKLRRDSQ---IPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++V+D +K+ ++ +GY NG EALE + PD+I++D+ L ++ Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+ +S +P+I +TA + G + Y+SKP S I Sbjct: 61 DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 243 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + R +E G + NG +ALE R+ PD +++DI + + G E Sbjct: 13 ILVVDDEPRLVTFMRVNLEAEGCRVISAENGRKALEKVREDMPDAVLLDIMMPGLDGYET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E IPVI +TA + D R + G + YI KP S + ++ + Sbjct: 73 LRRLRE---FSSIPVIFLTAKDEEDDRIRGLELGADDYIGKPFSHRELVSRLRAVLRR 127 >gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +V+I +D + L + +E Y +G EAL+L + +++I+D+ + +I Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ ++ IP++ +TA + D+ G + YI+KP S++ + IK Sbjct: 61 DGIEVCRRLRNNT---NIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis KIM 10] gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis Z176003] gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM 10] gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis D106004] gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis D182038] gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis Z176003] Length = 239 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130 Query: 121 GE 122 Sbjct: 131 RR 132 >gi|312883993|ref|ZP_07743710.1| sensory box sensor histidine kinase/response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368451|gb|EFP95986.1| sensory box sensor histidine kinase/response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 1127 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+++ ++T GY L +G+ ALE R P +I++DI + ++SG ++ Sbjct: 723 ILVVDDEPINLRILNSYLKTEGYRVLTVNDGLSALEAVRNETPQLILLDIMIPDMSGYDV 782 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + +P+I +TA D + G ++SKP + + I ++ + Sbjct: 783 CVKLRKTYDHATLPIIMLTALNQTEDRLKGFASGANDFLSKPFNQKELLARITAHLAAS 841 >gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +AL +A + PD+I++DIQ+ + GL Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 69 TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 Query: 123 A 123 + Sbjct: 127 S 127 >gi|182415603|ref|YP_001820669.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177842817|gb|ACB77069.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 376 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 68/117 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N++L + +E G NG+EAL+L R+ KPD+I++D+ + ++ G+E+ Sbjct: 6 ILVVDDQPINVQLLKRKLEREGIQVTAAYNGLEALDLVRKTKPDLILLDVMMPDMDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++++ D + IP+I +TA K + G YI+KPI L + ++ + Sbjct: 66 CQRLQADELTRSIPIIFITARTSKEGKIEGLNVGAVDYITKPIDLDETLARVQTQLR 122 >gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 234 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D ++ ++ GY +G A+E A D++++D+ L E+ Sbjct: 1 MSKHILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ P++ ++A A + D + G + Y++KP S + ++ + Sbjct: 61 GLEVCRRLRA---GSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] Length = 237 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED K+ + +E + + +G+ AL+L +Q PD+II+D+ L ++ GLE Sbjct: 2 KILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQAPDLIILDLMLPKLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 62 VCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRS 121 >gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957] gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957] Length = 459 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N++L + Y +G EAL A PD+I++D+ + + Sbjct: 1 MSARILVVDDIAANLRLLEARLNAEYYEVALASSGPEALSRAEDWMPDIILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA + R + G + ++SKP+ S ++ + Sbjct: 61 GYEVCRRLKASTATAHIPVVMVTALVDASERVRGLEAGADDFLSKPVDHSTLFARLRALL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 55.5 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 45/110 (40%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ++ +L ++ G T +A + + D+ ++ + L GL + Sbjct: 156 ILLATEDVNEAELLTGVLAVDGVTLRLTGTATQAWQALSEGAFDLALLSLSLDGGEGLRL 215 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 +++ + +++PV+ + G R + G ++ +P+ + Sbjct: 216 ASRLRAQAATRDLPVLLIADADQHGLVLRGFELGANDHVLRPVDPNELRA 265 >gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + MEAL+L + + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIREN---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254424776|ref|ZP_05038494.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192265|gb|EDX87229.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 262 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L + + G+ R+G AL+ R +PD+II+D+ + + GLE+ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ +E+++ ++ +TA + D G + YI KP S + ++ + + Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRS 121 >gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 241 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED + +E GY+ +G ALE +H D+I++D+ L ++SG Sbjct: 6 KRILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLMLPKLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E +P+I +TA D + G + Y+ KP S + ++ + Sbjct: 66 RVCRAVRE---TSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] Length = 229 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E G+ + +G EA+ L + PD++I+D + +SG+E+ Sbjct: 8 VLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K + IPVI ++A + + D R + G + Y+ KP +L M ++ + Sbjct: 68 CRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRR 125 >gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] Length = 229 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED ++ +E+ G+ + NG EA+ L + PD+II+D + +SG+E+ Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K + + IPVI ++A + + D R + G + Y+ KP S+ M ++ + Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125 >gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum] Length = 240 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++++D ++ + GY + +G EAL + ++ P+++++D+ + ++ Sbjct: 1 MQKEKILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++++++S ++P+I +TA + D + G + YI KP S I+ Sbjct: 61 DGYGVCQELRKES---DVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 247 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D E KL + GY + +G A +LA + D II+D+ L + G Sbjct: 1 MKKVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ KQ+++D P++ +TA + ++ + G + Y++KP S + +K + Sbjct: 61 MDVCKQLRQDKV--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586] gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586] Length = 236 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN+ + +D + +G+ + NG +L H PD+II+DI + G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + D + G + YI+K S + IK + Sbjct: 65 TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|224371412|ref|YP_002605576.1| putative chemotaxis response regulator [Desulfobacterium autotrophicum HRM2] gi|223694129|gb|ACN17412.1| putative chemotaxis response regulator [Desulfobacterium autotrophicum HRM2] Length = 396 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+++ +E G L +NG AL +A++ +PD+I++DI + I G E+ Sbjct: 25 ILLVDDQPVNLQVLMHTLERLGCKLLVAKNGETALTIAQKARPDLILLDIMMPGIDGFEV 84 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D Q+IPVI ++A GD+ R + G Y++KP + + ++ Sbjct: 85 CRRLKADPSTQKIPVIFLSALDDTGDKVRGLQLGAVDYVAKPFQPEEVIARVNTHL 140 >gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E GY A++ + ALE + P++I+MD L S Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K D ++IPV+ +TA + D+ R + G + YI+KP S M +K + Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY ++ + A+ + P+++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 228 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L + +G+ ++ + +A L R+ PD+I++D L +S Sbjct: 1 MPANILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +++K D + IP+I +TA + D+ R + G + Y++KP S IK + Sbjct: 61 GIEFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter alkaliphilus HTCC2654] gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales bacterium HTCC2654] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ R + + GY NG +A+ L + PD+I++D L +SG+EI Sbjct: 8 VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWMLPGVSGIEI 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K E +IPVI ++A + + D R + G + Y+ KP S+ M I+ + Sbjct: 68 CRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRR 125 >gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 243 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IV+D + + + GY +G +AL A + PD+I++DIQ+ + GL Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 69 TAARRIRSTGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 Query: 123 A 123 + Sbjct: 127 S 127 >gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 246 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA D+ G + Y++KP + + ++ + Sbjct: 61 FTVCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|153838150|ref|ZP_01990817.1| two component transcriptional regulator, winged helix family [Vibrio parahaemolyticus AQ3810] gi|149748466|gb|EDM59325.1| two component transcriptional regulator, winged helix family [Vibrio parahaemolyticus AQ3810] Length = 226 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN + D + +G+ L NG +L H PD+II+DI + G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S +IP+I +TA + D + G + YI+K S + IK + Sbjct: 64 TLCQKLRKNS---DIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++VED + ++ GY +G+ AL+LAR+ +P++I++D+ L + Sbjct: 1 MAEKILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++++ PV+ +TA + D + G + Y++KP S+ + +K + Sbjct: 61 GFELCRRLRQE---MNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAML 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|298485851|ref|ZP_07003928.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159629|gb|EFI00673.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 245 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + + D++I+D+ L G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPHEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 239 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +L R +E Y+ + +G EALELA ++ D I++DI + E G+E Sbjct: 6 RILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIMMPEKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+E + PVI +TA + + + + G + YI KP S + +K + Sbjct: 66 VCQAIREK---KATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 230 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D + + L R +E G+I + G +AL++ D+II+D+ L I G Sbjct: 5 ARILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPVIDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E + PVI +TA + D+ + G + Y+ KP S +K + Sbjct: 65 TVCKKIREK---YDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRR 121 >gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 239 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D+ +L + E G+ +G ALE ++ P+V+I+D+ L G Sbjct: 1 MKKVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I++ +P++ +TA D+ + G + YISKP + K + Sbjct: 61 YEVCREIRK---TSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|153829131|ref|ZP_01981798.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875389|gb|EDL73524.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1177 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887 >gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 233 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D + R + +GY + +G++ALE+ + P+++I+D+ + + GLE Sbjct: 2 KVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + ++ +TA D G + Y++KP +L + ++ + + Sbjct: 62 VCRTLRSQGDDRS--ILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRS 119 >gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219] gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219] Length = 232 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D + ++ + + + L NG EALE+ ++ K D+++MDI + + G Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ TK+I+++ Q IP+I ++A + D+ G + YI+KP + IK + Sbjct: 61 VKATKEIRKN---QNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 234 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++IVED E L R +E G++ G EA + PD++++D + +SG Sbjct: 3 SARILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMVPGLSG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ E + +PVI +TA + D R G + Y+ KP S+ + ++ + Sbjct: 63 IELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLR 122 Query: 122 EA 123 A Sbjct: 123 RA 124 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +DN + L+ Y +G+ AL+ PD+++ D+ + + G E Sbjct: 629 RILIADDNADMRDYLKRLLSQQ-YEVEAVVDGLTALKAIHSCHPDLVLTDVMMPGLDGFE 687 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K ++ D Q IP+I ++A A + + G + Y+ KP S + ++ + Sbjct: 688 LLKSLRADLSTQHIPIILLSARAGEESRVEGLEAGADDYLIKPFSARELLARVEATL 744 Score = 117 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+E ++ SG + EAL++ + P+VI+ D+ + ++ G + Sbjct: 1279 ILVVDDDEDTRYFLAFALQQSGATVTTVGSASEALQVLVRSAPNVIVSDVGMPDMDGYML 1338 Query: 65 TKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +QI+ ++I IA+TA+A + D ++ + G + +I KPI+ S+ ++TI Sbjct: 1339 IQQIRMLEAQQGREKIKAIALTAYAGEIDRQQALREGFQRHIIKPINPSVLIKTI 1393 >gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis] Length = 239 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D E L + +E SGY + +G EAL+ A KPD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S +K + Sbjct: 60 GIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 228 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++ IV+D++ + L + E G++ + +G E L L + PD+ ++D+ L ++ Sbjct: 1 MAKRIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++++++ IP+I +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GFEICRKLRKEG---NIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13] Length = 265 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVED L RD + G+ L+ +G EAL + ++ D+ I+DI + ++ Sbjct: 43 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 102 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+E + P+I +TA + + D+ + G + Y++KP S + + K + Sbjct: 103 GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 159 Query: 121 GE 122 Sbjct: 160 RR 161 >gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 239 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK +++V+D ++L ++ GY L+ + EAL++A ++ D+ I+DI L + Sbjct: 1 MAKKSILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + ++ + ++ PVI ++A + + D+ + G + YI+KP S+ + I+ Sbjct: 61 DGFELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAV 120 Query: 120 IGE 122 Sbjct: 121 FRR 123 >gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1336 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++IV+D+ +N+++ + + Y Q NGMEALE+ PD+I++D+ + ++G Sbjct: 872 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 931 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T++I+ED ++P++ +TA D + G Y+SKP++ + IK +I Sbjct: 932 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIR 990 >gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 61/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D ++L ++ GY NG EA+ A++ PD+II+DI + ++ G+ Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++ E + ++ +TA + + E G + YI+KPI + I + Sbjct: 66 EACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRR 125 >gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 231 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M ++IV+D +L R +E +G+ +Q +G+ ALE AR PDV+I+DI L + Sbjct: 1 MSTPTILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + ++++ + ++ +TA A + D + G + Y++KP + + ++ Sbjct: 61 DGLAVCRRLR---TFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRAL 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D+ L +D + G+ + +G EAL +A + +PD+I++D+ + ++ Sbjct: 2 MAKTILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVMMPKLD 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++ PVI +TA + D+ + G + Y++KP + + ++ + Sbjct: 62 GFQFMQTFRKR---HNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223] gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223] Length = 236 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN+ + +D + +G+ + NG +L H PD+II+DI + G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + D + G + YI+K S + IK + Sbjct: 65 TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 242 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L ++ + + NG +AL + + D++++D+ L E+SG Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ D + PVI +TA + D+ + G + Y+ KP S + I + Sbjct: 61 EEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 67/120 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED ++ +E G+ L+ NG E L + + PDVI++D + +SG+E Sbjct: 7 TVLIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K +E + IP+I ++A + + D+ R + G + Y+ KP S+ + ++ + + Sbjct: 67 VCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRS 126 >gi|90409613|ref|ZP_01217630.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] gi|90328966|gb|EAS45223.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] Length = 241 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++V+D++ +L + + SG+ G E PD+I+MD+ + G Sbjct: 5 KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRLASGYPDLILMDVMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ ++P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 65 TLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121 >gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 246 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + GY +G+ ALE+ + +PD++++D+ + + GLE Sbjct: 2 RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + ++PV+ +TA D G + Y+ KP +L ++ I + Sbjct: 62 TCRRLRARGD--DVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRS 119 >gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D++ +L R +E GY + +G EA+ KPD+I++DI L I G + Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S +P+I +TA D+ + G + YI KP + IK Sbjct: 65 VCREIRKKS---NVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120 >gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 232 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D +L +K R +E G +G EA+E+AR+ + D++++D+ L + G Sbjct: 1 MAKVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKRDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E E+P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 FEVCQAIRE---FSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319] gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319] Length = 238 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + +L + +E GYI + +G EA+E A D+I++D+ + I G+ Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E KQI+E + P+I +TA + + + + G + YI KP S + +K + Sbjct: 65 EACKQIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + R + GY A +G++AL+ A + PD+I++DIQ+ + GL Sbjct: 8 QRILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGL 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ S P++ +TA GD G + Y+ KP L ++ + Sbjct: 68 TAARRLR--SAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 125 Query: 123 A 123 + Sbjct: 126 S 126 >gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase [Maricaulis maris MCS10] Length = 454 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N++L ++ + NG +A+ +A+ +PD+I++D+ + + Sbjct: 1 MSARILVVDDQAANVRLLEARLQAEYFEVCTATNGADAIAVAKAEQPDLILLDVMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +IK+D + IPV+ VTA + D R + G + +++KPI I+ + Sbjct: 61 GYDTCSRIKDDPATRHIPVVMVTALDQREDRIRGLEAGADDFLTKPIDDVSMFARIRSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 74.0 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 28 IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAM 87 L+T + EA+ +A ++ D++I+D+ GL + +I+ D+ +++P++AV A Sbjct: 177 EILETHDPAEAI-IAARNDADLLIVDLTSPGYDGLRLCARIRSDAATRQLPILAVVRPAD 235 Query: 88 KGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 R G I +P+ + + Sbjct: 236 VQQAVRALDLGVNDIIQRPVDAGELAARSRTQLRR 270 >gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum] gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++M+VED E +L R +E GY G +A ++H PD+I++D L +S Sbjct: 1 MGARIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 230 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +L + GY +G++AL + R KP ++I+D+ + I G E Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+ +S +P++ +TA + + D+ + G + Y+SKP + + ++ + + Sbjct: 65 LCRLIRAES---SVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRS 121 >gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 235 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 MLKK++I+ED L + +G+ + +G + ELA KP +I++D+ L + Sbjct: 1 MLKKILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K +++ P+I +TA + D+ + G + Y++KP S + IK + Sbjct: 61 GVEVCKSLRQQKV--NTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 230 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++V+D ++L + GY + +G EA+ + I++DI + E+ Sbjct: 1 MMN-ILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIMMPEMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++I+ +P+I VTA D + K G + YI+KP + I+ + Sbjct: 60 GWETCRKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVL 116 Query: 121 GEA 123 + Sbjct: 117 RRS 119 >gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus MO6-24/O] Length = 1129 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 6 MIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +IV +D +N+++ + GY +G + LEL KP ++++DI + +SG ++ Sbjct: 725 LIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQV 784 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+++ ++ E+P+I +TA + D R + G Y++KP + IK ++ Sbjct: 785 CHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHL 840 >gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130 Query: 121 GE 122 Sbjct: 131 RR 132 >gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++V+D ++ + Y + +G+EAL+ PD++++D+ + E Sbjct: 1 MSKTTKILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLMMPE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E+ K ++ + PVI +TA D+ G + Y++KP S S +K Sbjct: 61 MDGFEVCKAMRNRGD--NTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKA 118 Query: 119 YIGE 122 + Sbjct: 119 VLRR 122 >gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E ++ R +E G+ + +G++ALEL +II+D+ L +SG Sbjct: 1 MDRILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ IP+I +TA + + R G + YI KP S + + + Sbjct: 61 EDVCKQLRRQGN--NIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 1010 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 75/118 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VEDN +N+ D + + GY NG EAL+ Q +P++I+MDIQ+ + G+ Sbjct: 892 RRILLVEDNTVNILTISDYLHSRGYTVAVANNGQEALDSIEQAQPELILMDIQMPVMDGI 951 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++++ EIP+IA+TA AM GD ER G AY++KPISL ++ I++ + Sbjct: 952 EATRRLRAMPAYSEIPIIALTALAMPGDRERCLAAGANAYLTKPISLRHLVQMIEEMV 1009 >gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 231 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + ++ED+E +L + G+ NG A E +Q KPD++++D+ + E+ G Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE K ++ D EL+ IP+I +TA + + D+ + G + Y++KP S + +K + Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED E ++ + ++ GY A+ G + L R+ + D+I++DI L E+S Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+I+ + PVI +TA + D+ + G Y++KP + + I+ + Sbjct: 61 GIDVLKRIRATE--SKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|15640642|ref|NP_230271.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587963|ref|ZP_01677717.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|121728271|ref|ZP_01681303.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|147675649|ref|YP_001216115.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|153818929|ref|ZP_01971596.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|153822991|ref|ZP_01975658.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|227080803|ref|YP_002809354.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|254850855|ref|ZP_05240205.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|298500739|ref|ZP_07010542.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|9655056|gb|AAF93788.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547810|gb|EAX57898.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|121629465|gb|EAX61892.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|126510546|gb|EAZ73140.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|126519498|gb|EAZ76721.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|146317532|gb|ABQ22071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227008691|gb|ACP04903.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|227012447|gb|ACP08657.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|254846560|gb|EET24974.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|297540520|gb|EFH76578.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1177 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887 >gi|254226732|ref|ZP_04920308.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125620749|gb|EAZ49107.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1177 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887 >gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 232 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D +L +K R +E GY +G EA+E A++ + DV+++D+ L G Sbjct: 1 MARVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLPGHDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E E+P+I +TA D+ + G + YI+KP ++ IK I Sbjct: 61 FEVCQTIRE---FSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|153801748|ref|ZP_01956334.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|153825707|ref|ZP_01978374.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|254291241|ref|ZP_04962036.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|124122713|gb|EAY41456.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|149740644|gb|EDM54753.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|150422805|gb|EDN14757.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1177 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887 >gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] Length = 248 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 17 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 76 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 77 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 133 Query: 120 IGE 122 + Sbjct: 134 LRR 136 >gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio metschnikovii CIP 69.14] gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio metschnikovii CIP 69.14] Length = 1139 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 60/115 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I +D +N+++ + GY +G E +E + KP+++++D+ + +SG ++ Sbjct: 735 LIADDEPVNLRVLDSFLRLEGYRVRTALDGHEVIEAIAKEKPELLLLDVMMPGMSGYQVC 794 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q++E + ++P+I +TA D R G Y+SKP + IK ++ Sbjct: 795 EQLREQYDHAQLPIIMLTALTQSDDRIRGFAAGANDYLSKPFNKQELAARIKAHL 849 >gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1191 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 65/115 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +N KL L++ G+ NG AL++ + D+I+MD+ + + GLE Sbjct: 937 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPYDLILMDMMMPVMDGLEA 996 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ + + IP+IA+TA AM+ D + G + YI+KPI + I + Sbjct: 997 TRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKILQL 1051 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-------KPDVIIMDIQL 56 +++V+DN +N ++ ++ + G Q +G AL+ Q D++++D Q+ Sbjct: 789 HILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQM 848 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G ++ +P++ +++ MKGD +R R+ G Y+SKPI+ ++ + Sbjct: 849 PEMDGFSTAPLVRGLPNCSSLPMVLLSSAGMKGDGQRSRQVGIAGYLSKPIARQDLLQMV 908 Query: 117 KKYI 120 + Sbjct: 909 SGVL 912 >gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 239 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 8 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 67 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 68 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 124 Query: 120 IGE 122 + Sbjct: 125 LRR 127 >gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 225 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D E L +E + + L+ NG EAL++ + +K DVI++D+ + ++ G Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+E S ++P++ +TA + D+ + K G + YI KP S + I+ + Sbjct: 64 TLCARIREQS---DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 123 A 123 A Sbjct: 121 A 121 >gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio vulnificus CMCP6] gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio vulnificus CMCP6] Length = 1129 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 6 MIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +IV +D +N+++ + GY +G + LEL KP ++++DI + +SG ++ Sbjct: 725 LIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQV 784 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+++ ++ E+P+I +TA + D R + G Y++KP + IK ++ Sbjct: 785 CHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHL 840 >gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 236 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L +D +E GY + +G+ A A KPD+I++D L ++ Sbjct: 1 MDQKILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCMLPRMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+I++ S +P+I +TA + + D+ + G + YI+KP S+ + +K + Sbjct: 61 GVDVCKKIRQSS---SVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] Length = 238 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D+E +L + Y +G ALE + P++I++D+ L + Sbjct: 1 MDKEKILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFAPNLILLDVMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ +I++ S +P+I ++A D+ K G + YI KP + + + Sbjct: 61 DGYQVCTEIRKQS---NVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGAL 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] Length = 239 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130 Query: 121 GE 122 Sbjct: 131 RR 132 >gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1648 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 61/114 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+DN + ++ +G+ +G ALE ARQ +PD+++ D+ + + G Sbjct: 660 ARLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQERPDLVLSDVMMPRLDGF 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + ++ D EL++ PV+ ++A A + + G + Y++KP S + + Sbjct: 720 GLLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773 Score = 74.8 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61 V++VED+E +++ GY L+ ++ AL + P DV+ D+ + + Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++ +E L I V+ + + G +SKP + I+ + Sbjct: 1438 TELARKARE--RLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494 Score = 62.1 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+EL +L+ + L+ +A ++ +H V++ D+ L SG++ Sbjct: 1533 RILLVEDDELIRASTAELLRMFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1592 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++ ++ VI +T + + + + + KP L ++ +K + Sbjct: 1593 LALEVCA--VRPDLRVIFLTGYDLVLTPAQRKVLPHAILLRKPYDLLDLIDALKTPLR 1648 >gi|330873059|gb|EGH07208.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 245 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G E + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAEFRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|309791478|ref|ZP_07685982.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308226475|gb|EFO80199.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 407 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D LN+K+ + + GY G AL+ A +PD+ I+D+ + +I G E Sbjct: 7 RILIVDDTPLNLKMVSAALASGGYQIETATTGHMALDRAVTFRPDLFILDVMMPDIDGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + P++ +TA + R + G + Y+SKP +K + Sbjct: 67 VCRRLRRMTTFAQHPILMLTANDTLEERVRGLEAGADDYMSKPFQPIELQARVKALLRR 125 >gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I +D +KL D ++ G+ NG +AL++ + + D++I+D+ + E G Sbjct: 5 KKILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVMMPEYDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ +P+I +TA A + DE + G + Y++KP S I + ++ + Sbjct: 65 AVCREIRK---TSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRR 121 >gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718] gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding [Nitrosomonas europaea ATCC 19718] Length = 240 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED +L + +GY A+ T + +A + + PD++++D L S Sbjct: 1 MSATVLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + ++ D + IPVI +TA + D+ + G + Y++KP S + IK + Sbjct: 61 GIELARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|254227379|ref|ZP_04920811.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262396356|ref|YP_003288209.1| putative two-component response regulator [Vibrio sp. Ex25] gi|151939991|gb|EDN58817.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262339950|gb|ACY53744.1| putative two-component response regulator [Vibrio sp. Ex25] Length = 235 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN + D + +G+ L NG +L H PD+II+DI + G Sbjct: 4 KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA + D + G + YI+K S + IK + Sbjct: 64 TLCQKLRKNS---DVPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +AL +A + PD+I++DIQ+ + GL Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 69 TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 Query: 123 A 123 + Sbjct: 127 S 127 >gi|220906185|ref|YP_002481496.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219862796|gb|ACL43135.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 123 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 48/122 (39%), Positives = 74/122 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE+N + + GY +G + +ELA PD+I+MD+ L I G Sbjct: 1 MPKILLVEDNEMNRDMLSRRLTRKGYDVTIAVDGQQGVELAHTQTPDLILMDMSLPVIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+Q+K S+ Q IPVIA+TA AM GD E+ + GC+ Y +KPI L + I+ +G Sbjct: 61 WEATRQLKASSQTQAIPVIALTAHAMSGDREKALEAGCDDYDTKPIDLPQLLSKIEALLG 120 Query: 122 EA 123 ++ Sbjct: 121 KS 122 >gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e] gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes HCC23] gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes Finland 1988] gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL R2-561] gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes 10403S] gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes J0161] gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818] gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900] gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL J2-003] gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071] gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e] gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes HCC23] gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900] gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071] gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818] gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 238 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G +AL +A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 296 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 63 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 122 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 123 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 179 Query: 122 E 122 Sbjct: 180 R 180 >gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei 87.22] gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces scabiei 87.22] Length = 244 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D R + GY +G +ALE A ++PD++I+D+Q+ + GL Sbjct: 11 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + P++ +TA GD G + Y+ KP L ++ + Sbjct: 71 TAARRIRGAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 237 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D + L + GY +Q +G EAL + D++++D+ L ++ G Sbjct: 5 STRILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQLDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ S +P+I +TA + + D+ + G + YI+KP S+ F +K + Sbjct: 65 LEVCRRLRSRS---SVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALR 121 Query: 122 EA 123 + Sbjct: 122 RS 123 >gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] Length = 234 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++IVED E L R +E G+ G EA + PD++++D + +SG Sbjct: 3 SAHILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ E + +PVI +TA + D R G + Y+ KP S+ + ++ + Sbjct: 63 IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 122 Query: 122 EA 123 A Sbjct: 123 RA 124 >gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] Length = 227 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ +++ GY + +G AL ++H PD++++D+ L + Sbjct: 1 MSSRILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+ + + P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GFDVCRAIR---RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|289678167|ref|ZP_06499057.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 195 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 223 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I+ED+ +L ++ G+ +G E L A+ + D+II+D+ L +++ Sbjct: 1 MKEKILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLMLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+E E+P+I +TA D+ G + Y++KP S + IK I Sbjct: 61 GIEVCKRIRE---FSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 66/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E G+ ++ NG EA+ L + PD+I++D + +SG+E+ Sbjct: 8 VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPNLSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K E + IPVI ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 68 CRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRR 125 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED++ ++ R + +GY L+ +G L A +H PD +++D+ L + GL+ Sbjct: 6 RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++P++ +TA + D R + G + Y+ KP S + I + + Sbjct: 66 VCRELRA--RRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRS 123 >gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 233 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E+ GY G +A ++ PD++++D L +S Sbjct: 1 MGARILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ S+ +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + MEAL+L + + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + IP+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIRED---RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278] gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response regulator receiver domains) [Bradyrhizobium sp. ORS278] Length = 473 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L NG EAL++ ++ + D+I++D+ + ++ Sbjct: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAECDIILLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 90.2 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ T + + EA+ A D++I+ + L + GL Sbjct: 157 RILLVDDRPSSYERLGPMLATE-HSVDVEPHPAEAVFNAADGNYDLVIVSLDLDDFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P++A+ A A R + G Y+ +P+ + + + I + Sbjct: 216 LCSQLRSLERTRHVPILAI-AEAENNSRLLRGLEIGVNDYLLRPVDKNELLARARTQIRK 274 >gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] Length = 236 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN+ + +D + G+ + NG H PD+II+DI + G Sbjct: 5 KQILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHHPDLIILDIMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + D + G + YI+K S + IK + Sbjct: 65 TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 243 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + + + GY +G++AL A ++PD++++DIQ+ + GL Sbjct: 9 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ +PV+ +TA GD G + Y+ KP L I+ + + Sbjct: 69 AARRLRATGST--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 126 >gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 224 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L R +++ G+ + +G+EAL K D+ I+D+ + + G Sbjct: 1 MNKILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPV+ +TA + + + G + Y+ KP M +K + Sbjct: 61 FELCQELRAS---YDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] Length = 237 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + IP++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 229 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED+ ++L +E++G+ +G LELA + KPD++++D+ L + Sbjct: 1 MAKDRLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ K +K E QE PVI +TA + D + G + Y+ KP S + IK Sbjct: 61 SGLDVCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAV 120 Query: 120 IGE 122 + Sbjct: 121 LKR 123 >gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 230 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + + + + +E GY + +G +AL + D++++D+ L +I Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+++E ++P+I +TA A + D+ + G + YI+KP + + I+ Sbjct: 61 DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 246 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 66/121 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED++ L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ ++A D+ G + Y++KP L+ + ++ + Sbjct: 61 FTVCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] Length = 233 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT] gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 227 Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D + ++ + +E G+ + T +G AL + PD+II+D+ L EIS Sbjct: 1 MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+++S +P+I +TA D+ + G + Y++KP + +K + Sbjct: 61 GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++L + + GY + +G+ ALE+ + +K D++I+DI + + G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + + + +PVI ++A + + D+ + G + YI+KP S+ + +K + Sbjct: 61 YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB [Thiomonas sp. 3As] Length = 244 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L ++ +G+ ++ + EAL + R PDV+++D L +SG+ + Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ D+ + IP+I +TA + +GD+ + G + YI+KP S + I+ + Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124 >gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 230 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY ++G+EAL+L ++PD +++D+ + + Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 266 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ +++ + +G+I +G AL+ A + PD+I++D L I G Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ ++P+I +TA + + G + YISKP S + ++ + Sbjct: 100 EVCRRIRSRG---DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR 156 Query: 123 A 123 + Sbjct: 157 S 157 >gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes Clip81459] gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J2-064] gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J1-175] gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes 1816] gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes 220] gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes str. Scott A] Length = 238 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G +AL +A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 265 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L +E SG+ +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKGQALALQYSPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L IK + + Sbjct: 65 CQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 >gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] Length = 229 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D L +K + + +G EALE+A++ + D++++D+ L ++ Sbjct: 1 MGKKVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQRIRE---FSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|86608608|ref|YP_477370.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557150|gb|ABD02107.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 339 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 69/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + L DL+++ GY + +G +AL++ + +PD+I++D+ + + G E Sbjct: 23 HLLIVDDQPNSRLLLGDLLQSIGYRVSEAESGNQALQMLKTFQPDLILLDVMMPGLDGFE 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++IK + E + IPV+ VTA + + R + G + ++SKP S + ++ + + Sbjct: 83 VCRRIKANDETRLIPVVLVTAASDHKNRVRGIEAGADDFLSKPFDESELLARVRSLVRQ 141 >gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13] Length = 239 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +L + +E Y+ + NG ALE+A + + DVI++D+ + + G+E Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPGMDGME 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E + P+I +TA + + + + G + YI KP S + +K + Sbjct: 66 VCKEIREK---KATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRR 121 >gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119] Length = 233 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED E ++ + ++ GY A+ G + L R+ + D+I++DI L E+S Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+I+ + PVI +TA + D+ + G Y++KP + + I+ + Sbjct: 61 GIDVLKRIRATE--SQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1] gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1] Length = 1044 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 68/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++V+DNE+N K+ + GY A NG EAL+ + +I+MD Q+ + G Sbjct: 918 SKRLLVVDDNEVNRKVACGFLRKLGYEADTAENGQEALDAVLEKDYGLILMDCQMPVMDG 977 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QIK + + +P+IAVTA AM+GD ++ G + Y +KPI E + ++ Sbjct: 978 YEATRQIKALPKGKYLPIIAVTANAMEGDRDKCLAAGMDDYTTKPIRREKLQELLNHWL 1036 >gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++VED K+ + +GY +G++AL+L +H+PDV+++D L ++G Sbjct: 10 MEKILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPRLNG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ S PV+ +TA + + D + G + Y++KP S+ + ++ + Sbjct: 70 LEVLRRLRQSSAT---PVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLR 126 Query: 122 EA 123 A Sbjct: 127 RA 128 >gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris DX-1] Length = 457 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 69/121 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL D + + + NG+EALE+ ++ + D++++D+ + ++ Sbjct: 1 MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGVEALEICQRAECDIVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + L+ + N EAL A + D++I+ + L+ GL Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A A R + G Y+ +P+ + M Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELMA 266 >gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 223 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IV+D E + R + GY + +G + L+L + D++I+D+ L + G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I ++IK+ E PVI +TA DE + G + YI+KP + + + +K + Sbjct: 66 WSILREIKK---YTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR 122 Query: 122 E 122 + Sbjct: 123 K 123 >gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii DJ] gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii DJ] Length = 229 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ +E +GY L+ N +A + +PD+I++D L SG+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 >gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K KV+IV+D +L +E + + NG++A+ELA++ PD+I++DI + I Sbjct: 1 MKTGKVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMIPGI 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++I+ D ++IP+I +T + D+ R K G + YI+KP ++ + I Sbjct: 60 DGFEVCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAV 119 Query: 120 IGEA 123 + + Sbjct: 120 LRRS 123 >gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] Length = 238 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G +AL +A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 218 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ + D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D +L +K R +E G +G EA+ELA++ + D++++D+ L ++ G Sbjct: 1 MPRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E ++P+I +TA D+ + G + YISKP ++ IK I Sbjct: 61 YEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 233 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++V+D+ ++ IE + Y + NG EA+ +Q D+II+DI + E+ G Sbjct: 1 MQNILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIGMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I++ SE +P++ ++A + D + G + Y++KP S + I + Sbjct: 61 FEVCREIRKHSE---VPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] Length = 238 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G +AL +A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] Length = 234 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + L +E GY + +G +A ELA D II+D+ L + G Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EITK+++++ E P++ +TA D + G + Y++KP S + +K Sbjct: 61 IEITKKLRQEKI--ETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED ++ +G+ +G A+ A PD++I+DI L I G Sbjct: 1 MARILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIMLPTIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + I+ S +P++ +TA + D + G + Y++KP S+ M +K + Sbjct: 61 FDVCRHIRRSS---SVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229512884|ref|ZP_04402351.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TMA 21] gi|229350133|gb|EEO15086.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TMA 21] Length = 1129 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839 >gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 238 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y NG EAL L Q+ +++I+D+ + +I Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+++ D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] Length = 251 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+ +L +E + +G EAL + +++PD+II+D+ L I G Sbjct: 5 QRILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ S +PVI ++A D+ + G + Y+ KP + +K + Sbjct: 65 EVCRRLRMRS---SVPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 233 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + + D+II+DI + + Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMD 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 66 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W] gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W] gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1] gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1] gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 239 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] Length = 257 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D+ L + +E GYI +G + +L ++ +I++D+ L Sbjct: 21 MNQRILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNED 80 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ I +++ ++ +IP+I +TA D + G + Y+ KP + + IK + Sbjct: 81 GISICHRLRAEN--SDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVL 138 Query: 121 GE 122 Sbjct: 139 RR 140 >gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] Length = 239 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY L+ + A+ + PD++++D L S Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130 Query: 121 GE 122 Sbjct: 131 RR 132 >gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 237 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 59/117 (50%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ +L R ++ + +G + LE+A ++II+D+ L + G EI Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ + + P+I +TA + D+ + G + Y++KP F+ + + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRR 125 >gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CNEVA-9066] gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055] gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Western North America USA6153] gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger B] gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Vollum] gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Australia 94] gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 239 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101] Length = 253 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALE R+ PD++++D+ + ++ G Sbjct: 15 TILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVMMPKLDGYG 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 75 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130 >gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + L +E GY ++ +G EAL++ + + +II+DI + + Sbjct: 1 MSKETILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIMMPNM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E +I+E + +P+I ++A D+ G + YI+KP + + +K Sbjct: 61 DGIEACIKIREH---KNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase [Parvibaculum lavamentivorans DS-1] gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase [Parvibaculum lavamentivorans DS-1] Length = 457 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D N+KL + + + +G EALE A++ +PD+I++D+ + + Sbjct: 1 MTARVLIVDDVPANLKLLDAKLTAEYFDVFKAASGPEALEAAKEQQPDIILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K E + IPV+ VTA D + + G + +++KP++ ++ + Sbjct: 61 GFEVCRRLKAMPETEHIPVVMVTALDQPKDRVQGLEAGADDFLTKPLNDLALFARVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 95.6 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ ++D ++K + + + + E L+LA D+ I+ + LQE GL Sbjct: 157 RILAIDDRPTSLKRITETLASE-HNVTVAETQEELLQLANSGNFDLHIVSLTLQEFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ ++ P++A+ G R G Y+ +P+ + + + + Sbjct: 216 LCSQLRSLEATRQTPILAIVEEGDTGRLVRALDMGVNDYLVRPVERNELVARARSQLRR 274 >gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 226 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D+ +L R +E GY +Q +G++ LEL R +PD++I+D+ + E+ G+ Sbjct: 4 RTILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQRPDLVILDVMMPEMDGV 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +++E +PV+ +TA D + G + Y+ KP +++ I+ + Sbjct: 64 EACTKLRE---FSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRR 120 >gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 238 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E GY + +G AL+LA + +I++D+ L I G+E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVMLPGIDGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PV+ +TA + + + + G + Y+ KP S + +K + A Sbjct: 67 VCNRLRQ---VKATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRA 123 >gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185] gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185] Length = 218 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ + D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 244 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++V+D+ ++ +E +G+ + +G +AL LA +PD++++D+ L + G Sbjct: 12 MQSILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLMLPGMDG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++++ E +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 72 LEVCRRLRA-GEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVL 129 >gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 237 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + IP++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + + + + +E GY + +G +AL + D++++D+ L +I Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVMLPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+++E ++P+I +TA A + D+ + G + YI+KP + + ++ Sbjct: 61 DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|309792204|ref|ZP_07686676.1| diguanylate cyclase [Oscillochloris trichoides DG6] gi|308225745|gb|EFO79501.1| diguanylate cyclase [Oscillochloris trichoides DG6] Length = 647 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +D+ L R+ ++ GY NG E + +A+ PD++++D+ + + G E Sbjct: 30 RILIADDDPALCLLLRETLQDVGYEVRIASNGDELVRMAQDQPPDLLLVDLMMPLMDGFE 89 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q++ D+ +P+I +TA + D G + YI KP + + + I+ ++ A Sbjct: 90 AIRQLRNDTRTAHLPMIILTARSTSSDVVTGFDSGADDYIIKPYDVDVLLARIRSHLRRA 149 >gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D +K+ ++ +GY Q NG EALE + PD+I++D+ L ++ Sbjct: 1 MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+ +S +P+I +TA + G + Y+SKP S I Sbjct: 61 DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262] gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262] gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL J1-023] Length = 238 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G +AL +A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 245 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ ++L +E +GY Q +G++ LA Q PD+I++D+ L ++ G Sbjct: 1 MPRILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA ++ G + Y++KP L + ++ + Sbjct: 61 FTVCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D +L +K + +E +G EAL LA++++ D+I++D+ L +++G Sbjct: 1 MKKVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLPKLTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E +P+I +TA D+ + G + Y++KP ++ IK + Sbjct: 61 YEVCQAIRE---FSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +++ + GY NG+E ++ A++ KP +II+D+ + E+ G+E Sbjct: 7 KILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI++ EL+ + +TA + G + YI+KPI + + +K + Sbjct: 67 ACEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRR 125 >gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 269 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVED L RD + G+ L+ +G EAL + ++ D+ I+DI + ++ Sbjct: 47 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 106 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+E + P+I +TA + + D+ + G + Y++KP S + + K + Sbjct: 107 GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 163 Query: 121 GE 122 Sbjct: 164 RR 165 >gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++L + + GY + +G+ ALE+ + +K D++I+DI + + G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + + + +PVI ++A + + D+ + G + YI+KP S+ + +K + Sbjct: 61 YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I+ED E + L ++ +GY+ + R+G + L L + PD++++DI L I Sbjct: 1 MAQKILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPAID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ + P++ +TA + + D + G + Y+ KP S + ++ + Sbjct: 61 GFEVCRRIRA---WSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229505755|ref|ZP_04395265.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae BX 330286] gi|229509211|ref|ZP_04398696.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae B33] gi|229519579|ref|ZP_04409022.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC9] gi|229520913|ref|ZP_04410335.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TM 11079-80] gi|229608866|ref|YP_002879514.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae MJ-1236] gi|255744160|ref|ZP_05418113.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholera CIRS 101] gi|262155734|ref|ZP_06028858.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae INDRE 91/1] gi|262169924|ref|ZP_06037614.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC27] gi|229342146|gb|EEO07142.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae TM 11079-80] gi|229344268|gb|EEO09243.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC9] gi|229353783|gb|EEO18719.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae B33] gi|229357978|gb|EEO22895.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae BX 330286] gi|229371521|gb|ACQ61944.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae MJ-1236] gi|255738100|gb|EET93492.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholera CIRS 101] gi|262021658|gb|EEY40369.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae RC27] gi|262030445|gb|EEY49085.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae INDRE 91/1] Length = 1129 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839 >gi|330895752|gb|EGH28041.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 187 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 55/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 246 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 66/121 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED++ L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ ++A D+ G + Y++KP L+ + ++ + Sbjct: 61 FTVCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 232 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED + R +E GY + +G++ L+ AR+ +PD++++DI L + G Sbjct: 1 MATVLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++S ++P+I +TA + D + G + Y+ KP SL F+ ++ + Sbjct: 61 FSVCRILRQES---DVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces griseoaurantiacus M045] Length = 1389 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 61/117 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V++ +DN + L+ +GY + +G+EAL AR+ PD+++ D+ + + G Sbjct: 639 SARVLVADDNADMREYLARLLTAAGYQVTEVTDGVEALAAARRRTPDLVVSDVMMPRLDG 698 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 LE+ +++ D +PV+ ++A A + + G + Y+ KP + + + ++ Sbjct: 699 LELVSRLRADPRTASVPVVLLSARAGQEASIEGLRAGADDYLVKPFAAAELLARVRA 755 >gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase [Azospirillum sp. B510] Length = 464 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + L NG +ALE+ R PD++++D+ + + Sbjct: 1 MSARVLVVDDVLPNVKLLAAKLTREYFNVLTASNGPDALEMVRTESPDIVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ D IPV+ VTA + D R + G + +++KP++ ++ + Sbjct: 61 GFEVCEKIRSDPATMHIPVVMVTALSDIADRVRGLEAGADDFLTKPVNDIALFARVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 99.0 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 53/118 (44%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED+ L+++ + ++ + +ALE A D++++ + L GL + Sbjct: 158 VLVLEDSVLDLEKVTETLQRDHNTVMSADTCAKALERALGGSLDLVVVSLTLLNEDGLRL 217 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ +++P++ + G + + G Y+ KP+ + + + I Sbjct: 218 CSQLRSHERTRQVPILLMVDDGDLGQVAKGLELGANDYVVKPVDRNELLARARTQIRR 275 >gi|229530428|ref|ZP_04419816.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae 12129(1)] gi|229332201|gb|EEN97689.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae 12129(1)] gi|327483425|gb|AEA77832.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae LMA3894-4] Length = 1129 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839 >gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY ++G EAL+L +PD +++D+ + + Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio brasiliensis LMG 20546] gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio brasiliensis LMG 20546] Length = 1128 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 60/115 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + GY ++G EALE + KP+++++DI + +SG ++ Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALEAVEKEKPELLLLDIMMPGMSGYQVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++ + +PVI +TA D R G Y+SKP + I ++ Sbjct: 785 ETLRKSYDHAALPVIMLTALNQTDDRIRGFNAGANDYLSKPFNKQELAARIIAHL 839 >gi|218439941|ref|YP_002378270.1| response regulator receiver protein [Cyanothece sp. PCC 7424] gi|218172669|gb|ACK71402.1| response regulator receiver protein [Cyanothece sp. PCC 7424] Length = 124 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 72/122 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++KV++VED++ ++ L+ +G+ +G+EALE +Q PD++++DI + ++ Sbjct: 1 MMRKVLLVEDSQAQREMISTLLRENGWNVSIACDGVEALEFVQQSSPDLVVLDIVMPRMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D + +PV+ ++ + D K G +AYI+KP + TIK+ + Sbjct: 61 GYEVCRRLKSDPKTMNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPIELIGTIKQLL 120 Query: 121 GE 122 + Sbjct: 121 RK 122 >gi|119488886|ref|ZP_01621848.1| sensory box histidine kinase [Lyngbya sp. PCC 8106] gi|119455047|gb|EAW36189.1| sensory box histidine kinase [Lyngbya sp. PCC 8106] Length = 401 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D E N+ L ++ GY NG+ AL LA Q++PD+I++DI + +I+G E+ Sbjct: 8 ILIVDDIEDNLLLLTAILTEKGYQVQSAVNGLSALSLAVQNRPDLILLDIMMPDINGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K D ++IP+I ++A D+ + G Y++KPI + + +K ++ Sbjct: 68 CHRLKADPRTKDIPIIFISALGEVFDQVKAFSIGAVDYLTKPIRIPELLSRVKTHL 123 >gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis] Length = 238 Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V I +D + L + ++ Y +G +AL L Q+ ++I+D+ + +I G+E Sbjct: 5 RVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +P++ +TA ++GD+ G + YI+KP S++ + IK + Sbjct: 65 VCRRMRNHT---NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120 >gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 233 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED+ L ++ + GY G EAL+ PD++++D+ L + Sbjct: 1 MSARILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ + V+ +TA + + D + G + Y++KP SL+ + ++ + Sbjct: 61 GLEVCRRLRA--RHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590] Length = 241 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + +L + +E + + +G EA ELA H I++D+ L E+ Sbjct: 1 MSKEILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + R + +GY +G +AL++ + +PD++I+D+ + ++ GLE Sbjct: 2 KIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRHLRSHGDDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119 >gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + ++ GY NG LELA+++ D++I+D L + SGL+ Sbjct: 2 KILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + ++ + PV+ +TA D G + Y+ KP L + ++ + + Sbjct: 62 ICQYLRNQGDT--TPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRS 119 >gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 69/123 (56%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + +V++VED+ +L +E + +T +G EA+ LAR+ PD++++D ++ + Sbjct: 1 MARARVLLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ ++ +P+I +TA + D R + G + Y++KP S + + Sbjct: 61 SGIEVCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 244 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L ++ +G+ ++ + EAL + R PDV+++D L +SG+ + Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ D+ + IP+I +TA + +GD+ + G + YI+KP S + I+ + Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124 >gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 231 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L +++ G+ +G E L+L + +++++D+ + +++G Sbjct: 1 MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ + PV+ +TA D + G + Y++KP + ++ + Sbjct: 61 FAMLARLRK---THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V+I+ED +L +E G+ L +G L+ AR+ KPD+I++D+ L + G Sbjct: 1 MQTVLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K + IP+I +TA + D + G + Y+ KP S M ++ + Sbjct: 61 TEVCRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|254413172|ref|ZP_05026943.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179792|gb|EDX74785.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 467 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 1 MLKK-----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55 M KK ++IVEDN N+ + + SG+ L +G A++ +PD+I++D+ Sbjct: 1 MDKKAAQGNLLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAAQPDLILLDVM 60 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + + G E+ K++K +++IPVI +TA + ++ + G YI+KPI + Sbjct: 61 MPGMDGFEVCKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQPEEVVSR 120 Query: 116 IKKYI 120 I+ ++ Sbjct: 121 IQTHL 125 >gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905] gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905] Length = 237 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + + GY + +G EAL+ + +PD++++DI L + Sbjct: 1 MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREIRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 1140 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 K++IV+D +N+++ + + Y Q NG EALE+ +PD+I++D+ + +SG Sbjct: 730 KILIVDDEPVNIQVLINNLSVLKYEVTQATNGFEALEIIENGFRPDLILLDVMMPRMSGY 789 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++E E+P++ +TA D G Y+SKP S + + IK +I Sbjct: 790 EVCQILREKFPAIELPIVMLTAKNQVTDLVEGFNSGANDYLSKPFSKNELLARIKTHIRL 849 Query: 123 A 123 A Sbjct: 850 A 850 >gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 243 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IV+D + + + GY +G +AL + PD+I++DIQ+ + GL Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 69 TAARRIRSTGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 Query: 123 A 123 + Sbjct: 127 S 127 >gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp. SIP3-4] gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp. MP688] gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. SIP3-4] gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. MP688] Length = 228 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED +L + +G+ ++ + +A L R+ PD+II+D L +S Sbjct: 1 MPANILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +++K D + IP+I +TA + D+ + + G + Y++KP S IK + Sbjct: 61 GIEFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] Length = 238 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG EALE A Q+ D+I++DI + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 66 VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 122 >gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268] gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268] Length = 244 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L +E Y +G EAL+ + +II+D+ L I G Sbjct: 5 QKILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ S +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 EVCRRIRTSS---NVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5] gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5] Length = 249 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK+++V+D +L +K R +E G +G EALE AR + D++++D+ L ++ Sbjct: 21 MSEKKILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLPKL 80 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ +QI+E ++PV+ +TA + D+ + G + YI+KP ++ IK Sbjct: 81 DGFQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAI 137 Query: 120 IGE 122 + Sbjct: 138 MRR 140 >gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451] gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451] Length = 236 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN+ + +D + +G+ + NG +L PD+II+DI + G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + D + G + YI+K S + IK + Sbjct: 65 TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 238 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E +L + +E YI + NG +AL A ++ DVI++D+ L G+E Sbjct: 6 KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLPGRDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+I+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKEIREK---KATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 122 >gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system with phor [Cupriavidus taiwanensis LMG 19424] gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system with PhoR [Cupriavidus taiwanensis LMG 19424] Length = 235 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G K+++ + ++IP+I +TA + D+ + G + Y++KP S + IK + Sbjct: 61 GANFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 255 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + + +E G+ + +G EA+ LA + +PD+I++D+ L Sbjct: 1 MHGKILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEEQPDLILLDLMLPVKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++++ +P+I +TA + D+ + G + Y++KP S + +K ++ Sbjct: 61 GMDVCREVRTRL---HMPIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + ++ +GY ++ +G EAL A + KPD++++D+ L + G E Sbjct: 8 RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E +L ++ VI +TA D+ + G + Y+ KP + I+ + Sbjct: 68 VCRLLRE--KLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRR 124 >gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans TK24] gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +ALE A ++PD++++DIQ+ + GL Sbjct: 15 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +L P++ +TA GD G + Y+ KP L I+ + Sbjct: 75 TAARRIRGAGDL--TPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132 Query: 123 A 123 + Sbjct: 133 S 133 >gi|146319014|ref|YP_001198726.1| response regulator [Streptococcus suis 05ZYH33] gi|145689820|gb|ABP90326.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 05ZYH33] Length = 154 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + +G EALE+ PD++I+D+ L E+ G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 248 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D +K+ ++ +GY Q NG EALE + PD+I++D+ L ++ Sbjct: 1 MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+ +S +P+I +TA + G + Y+SKP S I Sbjct: 61 DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 231 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D +K+ ++ + + +NGMEA+ELA + PD++++D+ L +I G E Sbjct: 5 KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPDIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++IK S +IP+I ++A + D+ K G + Y +KP S + + I+ + + Sbjct: 65 VCRRIKSRS---DIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRS 121 >gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] Length = 239 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++IVED E L R +E G+ G EA + PD++++D + +SG Sbjct: 8 SAHILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ E + +PVI +TA + D R G + Y+ KP S+ + ++ + Sbjct: 68 IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 127 Query: 122 EA 123 A Sbjct: 128 RA 129 >gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311] gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311] Length = 266 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ +L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 1 MKPSILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPNVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + Y++KP L +K + Sbjct: 61 GLTLCQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D + L + +E +G+ L +G E + AR+ K DVII+D+ L + Sbjct: 1 MAKKVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ++ P++ +TA + + D+ + G + YI+KP S + +K + Sbjct: 61 GMDVCKQLR--LGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17] gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17] Length = 234 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY +G E LEL + D++++D+ L I G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] Length = 233 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + ++ GY +G +A+EL +PD++++DI L Sbjct: 1 MSRKIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88] gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88] Length = 233 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + L +E GY ++ NG++ALEL + K D+II+DI + + Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E +I+E+ + +P+I ++A D+ G + Y++KP + + +K Sbjct: 61 DGIEACTKIREE---KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + ++ + + L+ G EAL L + KPD++++DI L ++ Sbjct: 1 MGARILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+I + + VI +TA D+ R + G + YI KP S + IK + Sbjct: 61 GFQVCKEI--SCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAIL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 228 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D++ L +E G + + EAL+L Q + D+II+DI + + Sbjct: 1 MGTSILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ + +P+I ++A + D+ + G + Y++KP + + +K + Sbjct: 61 GIEACMKIREE---RNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|46014953|pdb|1NXO|A Chain A, Micarec Ph7.0 gi|46014954|pdb|1NXP|A Chain A, Micarec Ph4.5 gi|46014955|pdb|1NXS|A Chain A, Micarec Ph4.9 gi|46014957|pdb|1NXV|A Chain A, Micarec Ph 4.2 gi|46014958|pdb|1NXW|A Chain A, Micarec Ph 5.1 gi|46014959|pdb|1NXX|A Chain A, Micarec Ph 5.5 gi|116666718|pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The Essential Response Regulator From S.Pneumoniae In Complex With Bef3 And The Effect Of Ph On Bef3 Binding, Possible Phosphate In The Active Site gi|116666719|pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec gi|116666720|pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-Rec On Bef3 Bound Length = 120 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+D+ L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 234 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + L +E + Y + NG++A+E+ ++ D +IMD+ L ++ Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E TKQI++ E +IP+I +TA + D+ + G + YI+KP S + IK + Sbjct: 61 GIEATKQIRKFDE--QIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 238 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++ ED E + G+ L+ NG+EA+ L +Q P ++I+D+ + + GL Sbjct: 6 KRILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPRMDGL 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ S +P+I +TA + D+ G + Y++KP + + ++ + Sbjct: 66 EVCQRVRQSS---TVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRR 122 >gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++L + + GY + +G+ ALE+ + +K D++I+DI + + G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + + + +PVI ++A + + D+ + G + YI+KP S+ + +K + Sbjct: 61 YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 237 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K+++ + ++IP+I +TA + + D+ G + Y++KP S + IK + Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ED L R + GY+ +G E L+ AR + PD++I+D+ L E+SG Sbjct: 6 ARILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E ++P+I +TA D+ G + YI+KP + + I+ + Sbjct: 66 EVCRRLRE-GLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRR 124 >gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 226 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V+I+ED + +L +E GY + +G+ L+ A++ PD+I++D+ L + G Sbjct: 1 MQTVLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K +K+ + +IPVI +TA + D + G + Y+ KP S + IK + Sbjct: 61 TEVCKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|167629886|ref|YP_001680385.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592626|gb|ABZ84374.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 277 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++ I +D ++L R +E G+ A+ NG + L Q PD++I+DI + +G Sbjct: 1 MTRIFIADDEPPILELIRRYLEKEGFEAVTFTNGDDLLAAYAQQVPDLVILDIMMPGTNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K+++ DS ++P+I V+A + D + G + Y+SKP S + +K + Sbjct: 61 LDVCKRLRRDS---DVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 246 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 66/121 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED++ L +E +GY Q +G++ LA Q +PD+I++D+ L ++ G Sbjct: 1 MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ ++A D+ G + Y++KP L+ + ++ + Sbjct: 61 FTVCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC] gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112] gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC] gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] Length = 224 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++++ED +L R +E G+ L+ +G+ L +A PD++++D+ L + G Sbjct: 1 MQRILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++K IPV+ +TA + D G + Y+ KP S+ + I+ + Sbjct: 61 CDVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] Length = 237 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I +D + L + +E Y NG EAL L Q+K ++II+D+ + ++ G+E Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D+ G + YI+KP S++ + IK + Sbjct: 65 VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120 >gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|28868500|ref|NP_791119.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851738|gb|AAO54814.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331015209|gb|EGH95265.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 245 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 224 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+E ++ ++ G+ + +G +AL++ R +PD++++D+ L + Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +Q++ +S ++P++ +TA + D R + G + Y+ KP + + ++ + Sbjct: 61 GIEVCRQVRAES---DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + + + + +E GY + +G +AL + D++++D+ L ++ Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+++E ++P+I +TA A + D+ + G + YI+KP + + I+ Sbjct: 61 DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] Length = 236 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN+ + +D + +G+ + NG +L PD+II+DI + G Sbjct: 5 KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + D + G + YI+K S + IK + Sbjct: 65 TLCQKLRKHS---SVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|119484444|ref|ZP_01619061.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119457918|gb|EAW39041.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 437 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +++K+ + + +GY NG AL+ A PD+I++DIQ+ + G E Sbjct: 11 ILIVDDSPVHLKVLSESLVNAGYEVAVAINGETALKQALYDPPDLILLDIQMPGMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+K Q +P+I +TA A + + K G Y++KP + IK ++ Sbjct: 71 CHQLKAHPSTQAVPIIFMTALADTSSKIKGLKAGAVDYLTKPFQQEEVLARIKVHL 126 >gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +L + +E Y+ + NG ALE A Q+ D+I++DI + G+E Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + PVI +TA + + + + G + YI KP S + +K + + Sbjct: 66 VCKGIREK---KATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 122 >gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++E GY +G +A+ ++H PD++++D+ L + Sbjct: 1 MSSRILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ +S +P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GFEVCAALRAES---NVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family [Megamonas hypermegale ART12/1] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+DN+ + + + GY + +G EAL++ ++ +PD+I++D+ + +I G E Sbjct: 2 KVLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVMMPKIDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ +P+I +TA ++ + G + YI KP S M IK + Sbjct: 62 VCRVIRK---TSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRR 117 >gi|186686849|ref|YP_001870042.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186469201|gb|ACC85001.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 448 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN N+++ D++ GY ++G AL+ + + PD+I++D+ + I G E Sbjct: 11 TILVVDDNPTNIQVLFDVLSEIGYRVAIAKSGEAALQRVQSYHPDIILLDVMMPGIDGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121 +++K D +IPVI +TA + D+ + G YI+KPI + I+ + + Sbjct: 71 TCQRLKADCATCDIPVIFMTALSDTVDKVKGLSLGAVDYITKPIQHEEALARIRVHLQLR 130 Query: 122 EA 123 E+ Sbjct: 131 ES 132 >gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++L + +E GY + G A A +PD+II+D+ L I G+E Sbjct: 5 TILVVDDEHDILELLKYNLEREGYSVITVETGEAAAATAAAKQPDLIILDLMLPGIDGVE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ E+++IP+I +TA + D + G + Y++KP S + + I+ + Sbjct: 65 VCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123 >gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas albilineans GPE PC73] gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas albilineans] Length = 229 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + EA L PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++ ++D+ +E+P+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 234 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + L +E GY +G E LELA + D II+D+ L + G Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EIT++++++ E P++ +TA + D + G + Y++KP S + +K Sbjct: 61 MEITQRLRQEKN--ETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 233 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 66/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D ++L + + G+ + NG +A+++AR+ KPD+II+D+ L E+ G ++ Sbjct: 4 ILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYDV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K D E PVI ++A + D+ + G + YI+KP S + +K + Sbjct: 64 LQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRR 121 >gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 239 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + +L + +E GY+ + NG +A+E + + + I++DI + E GLE+ Sbjct: 7 VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 67 CAEIRERAAT---PIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRS 122 >gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED E L R +E+ GY G EA R+ PD++I+D L +S Sbjct: 1 MPTNILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P++ +TA + + R G + Y+ KP S+ + ++ + Sbjct: 61 GIELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] Length = 239 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330] gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12] gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15] gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330] gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12] gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15] gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + L +E GY +G E LELA + D II+D+ L + G Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EIT++++++ E P++ +TA + D + G + Y++KP S + +K Sbjct: 61 MEITQRLRQEKN--ETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] Length = 238 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + +E Y + +G +AL++A + +VI++D+ + G+E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + PV+ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCRELRE---FKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 6/124 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K ++IV+D ++L ++ G+ + NGM+AL + D++++DI + + Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E+ ++I++ +IP++ +TA + + D R + G + YI KP SL I+ Sbjct: 61 MDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIET 117 Query: 119 YIGE 122 + Sbjct: 118 TLRR 121 >gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] Length = 260 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ +++ + A+ PD++++D + S Sbjct: 32 MARRILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 91 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K DS+ ++IPV+ +TA + D + + G + Y+ KP S + +K + Sbjct: 92 GIQVIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAIL 151 Query: 121 GE 122 Sbjct: 152 RR 153 >gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + +L + +E GY+ + NG +A+E + + + I++DI + E GLE+ Sbjct: 9 VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 69 CAEIRERAAT---PIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRS 124 >gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus elongatus PCC 7942] Length = 235 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + +E SG+ N E E +Q +PD++I D+ + + G + Sbjct: 10 ILLVDDEPGLREAVQAYLEDSGFRVRTAANAQEGWEQLQQARPDLVITDVMMPRVDGYQF 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ D + +PVI +TA M GD + + GC+ YI+KP + ++ + Sbjct: 70 LAQLRGDDRFKALPVILLTARGMTGDRIQGYEAGCDDYIAKPFDPDELVVRVENLLRR 127 >gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ ++ G+ +G + LE + D+II+D+ + +I G Sbjct: 4 KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKIDGFT 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + IP+I +TA + D+ + G + Y+ KP S+ +K + Sbjct: 64 VLRELRK---TRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRR 119 >gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] Length = 231 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L R +E GY G EA L ++ +PD++++D L +SG Sbjct: 1 MPKILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ SE + +P+I +TA + + R G + Y+ KP S+ M ++ Sbjct: 61 IELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|153875667|ref|ZP_02003366.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152067869|gb|EDN66634.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 365 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D N+KL +++ + ++G +ALE KPD+I++D+ + + G E Sbjct: 10 LIVDDIPTNLKLLMNVLRHLDFTVQVAQDGEDALEQVAYAKPDLILLDVMMPGMDGFETC 69 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + +IPVI +TA D+ + + G YI+KP+ + + ++ Sbjct: 70 RRLKADEKTHDIPVIFMTALTETVDKVKGFEIGAVDYITKPVQPEEVLARVNTHL 124 >gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V+IV+D ++ +E + Y L+ + EA L KPD+I++D L +SG Sbjct: 3 SKQVLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLPGVSG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E +++K D EIP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 63 IEFARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++V+D +K+ ++ +GY NG EA+E + PD+I++D+ L ++ Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+ +S +P+I +TA + G + Y+SKP S I Sbjct: 61 DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++I+DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRTK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 66/124 (53%), Gaps = 1/124 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V+IV+D ++ +E + Y L+ + EA L +PD+I++D L Sbjct: 1 MSGKTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIIDKQPDLILLDWMLPGT 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ +++K++ +IP+I +TA + ++ + + G + YI+KP S + +K Sbjct: 61 SGVELARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 120 IGEA 123 + A Sbjct: 121 LRRA 124 >gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++L + + GY + +G+ ALE+ + +K D++I+DI + + G Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + + + +PVI ++A + + D+ + G + YI+KP S+ + +K + Sbjct: 61 YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + +E +GY L G E L++A + +PD+I++D+ L + Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EIT +++E S ++ ++ +TA + + D + G + Y++KP S + ++ + Sbjct: 61 GMEITARLRERS---DVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 239 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 239 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|213968363|ref|ZP_03396507.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301384629|ref|ZP_07233047.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058918|ref|ZP_07250459.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302133031|ref|ZP_07259021.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927001|gb|EEB60552.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|330963154|gb|EGH63414.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 245 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1] gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match) [Frankia alni ACN14a] Length = 358 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G AL LAR+ +PD +++DI L ++ GLE Sbjct: 20 RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGLE 79 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +S ++PV+ +TA D G + Y++KP SL + ++ + A Sbjct: 80 VLRRLRAES--PDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 137 >gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] Length = 230 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 62/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E L + +E GY G EA R+ PD++++D L +SG Sbjct: 1 MPKVLIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ E +PVI +TA + + R G + Y+ KP S+ M ++ + Sbjct: 61 IELCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+E G+ +G EAL + + D+I++D+ L +SG Sbjct: 1 MSRILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRQVRQRS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++I+DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRTK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L] gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152] gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152] Length = 229 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K K+++V+D +++ + GY NG EA++ A+++ P +I++DI + Sbjct: 1 MNKSDIKILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNTPHLILLDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E ++I++ L + + +TA + + G + YI+KPI + + IK Sbjct: 61 EMDGIEACEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIK 120 Query: 118 KYIGE 122 + Sbjct: 121 SLLRR 125 >gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] Length = 237 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + IP++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 228 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY +G E LEL + D++++D+ L I G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 234 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + L + +E Y +G EAL+ R D II+D+ L +SG Sbjct: 1 MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++T +I+E+ + P++ +TA + D+ + G + Y++KP S + IK Sbjct: 61 LDVTCKIREEKI--QTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIER 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 226 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++++D+ +L + +G +G L D +++D+ + + Sbjct: 1 MSTRVLLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+I+ S IPVI +TA + D + G + Y+ KP S + ++ + Sbjct: 61 GLEVCKRIRAKSR---IPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] Length = 233 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D++ +L R +E GY + +G EA+ KPD+I++DI L I G + Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S +P+I +TA D+ + G + YI KP + IK Sbjct: 65 VCREIRKKS---NVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120 >gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 229 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D ++L + GY ++G A+E A++ +P +I++DI + G Sbjct: 6 SHKVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E +Q++E E +I +TA + + E + G + YI+KPI M I Y Sbjct: 66 VETCRQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFR 125 Query: 122 E 122 Sbjct: 126 R 126 >gi|262163963|ref|ZP_06031702.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus VM223] gi|262027491|gb|EEY46157.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus VM223] Length = 1177 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E LE ++ KP+++++DI + +SG ++ Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 832 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887 >gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 242 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ +G AL LAR PD++++D+ L ++ G Sbjct: 10 ARLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++E E +PV+ +TA D+ + G + Y++KP SL + I+ + Sbjct: 70 SVTRRLREKGE--HVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127 >gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|153870406|ref|ZP_01999815.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073131|gb|EDN70188.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 358 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+K+ D +++ G+ ++G AL PD+I++D+ + +I G E Sbjct: 8 TILVVDDIPTNIKVLFDYLKSIGFKVRIAKSGEHALAQIALSPPDLILLDVMMPKIDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K D + +EIPVI +TA D+ + + G Y++KP + I ++ Sbjct: 68 VCRRLKADVKTREIPVIFMTAKTETVDKVKGFEVGAVDYVTKPFQQEEVLARINAHL 124 >gi|258623081|ref|ZP_05718094.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM573] gi|258584694|gb|EEW09430.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM573] Length = 1177 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E LE ++ KP+++++DI + +SG ++ Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 832 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887 >gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] Length = 237 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I +D + L + +E Y NG EAL L Q+K ++II+D+ + ++ G+E Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D+ G + YI+KP S++ + IK + Sbjct: 65 VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120 >gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Acidovorax ebreus TPSY] gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax ebreus TPSY] Length = 235 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +V+IVED +L + +G+ + +G A PDVI++D L Sbjct: 1 MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL++ ++ + DS ++IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 QSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L R +E + + + +G EAL A + PD+I++DI L E+ G E Sbjct: 2 KILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ SE +P++ +TA + D + G + Y++KP S + IK + Sbjct: 62 VCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRS 118 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + R + +GY + +G++ALE+ + +P ++I+D+ + + GLE Sbjct: 25 KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLE 84 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + + P++ +TA D G + Y++KP +L + ++ + + Sbjct: 85 VCRHLRSEGDDR--PILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 142 >gi|320352850|ref|YP_004194189.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320121352|gb|ADW16898.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +N +L L+ GY +G EAL L R +PD+I++DI + ++ GLE+ Sbjct: 8 ILVVEDSPINQRLLCKLLGKEGYAVRTADHGQEALALLRTFRPDLILLDILMPQMDGLEL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K ++IPVI +++ D+ + G YI+KP + + I ++ Sbjct: 68 CRLLKVGEATRDIPVIFISSLDDTSDKLSGFEAGGVDYITKPFHPAEVLARISTHL 123 >gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +ALE A ++PD++++DIQ+ + GL Sbjct: 13 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + P++ +TA GD G + Y+ KP L I+ + Sbjct: 73 TAARRIRSAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130 >gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] Length = 238 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|330466987|ref|YP_004404730.1| response regulator receiver modulated diguanylate cyclase [Verrucosispora maris AB-18-032] gi|328809958|gb|AEB44130.1| response regulator receiver modulated diguanylate cyclase [Verrucosispora maris AB-18-032] Length = 326 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+E + + G+ + +G EALEL + +PD+ ++D+ + I GLE+ Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGFDVMLASDGQEALELIERQRPDLAVVDLMMPRIDGLEL 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ D +PVI +TA M D+ G + Y+ KP + + + Sbjct: 71 TRRLRADPMTAVLPVIMLTAKGMTQDKVNGLSAGADDYLVKPFDTLELLARVTSTLRR 128 >gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++V+D +K+ ++ +GY NG EA+E + PD+I++D+ L ++ Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+ +S +P+I +TA + G + Y+SKP S I Sbjct: 61 DGFAVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16] gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family [Ralstonia eutropha H16] Length = 235 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G K+++ + ++IP+I +TA + D+ + G + Y++KP S + IK + Sbjct: 61 GANFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium DO] gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 234 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + L +E GY +G E LELA + D II+D+ L + G Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EIT++++++ E P++ +TA + D + G + Y++KP S + +K Sbjct: 61 MEITQRLRQEKN--ETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3] gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3] Length = 456 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + +G +AL++ Q + D+I++DI + + Sbjct: 1 MTARVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALDICNQEQVDIILLDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKANPKTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 70.9 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ + + + ++ AL A + +++I++ ++ L Sbjct: 156 RVLVADGRASSQERIVRALKPV-AEVDAVTEPQAALLKAASNPFELVIVNSNFEDYDPLR 214 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P++ V R G YI +PI + + I Sbjct: 215 LCSQLRSLERTRFLPLLLVAEQGADDMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D + + +E GY +G+ ALE+ + +++++D+ + + GL Sbjct: 7 ARVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGL 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA GD G + Y+ KP L + ++ + Sbjct: 67 TACRRLRAAGN--HVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRR 124 Query: 123 A 123 + Sbjct: 125 S 125 >gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE A Q+ D+I++DI + G+E Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 75 VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 131 >gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++I+DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRTK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 234 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY +G E LEL + D++++D+ L I G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K ++IV+D ++L + G+ + NGMEAL + D++++DI + + Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E+ ++I++ +IP++ +TA + + D + + G + YI KP SL I+ Sbjct: 61 MDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIET 117 Query: 119 YIGE 122 + Sbjct: 118 TLRR 121 >gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED E L +D +E S + +G L+ D+II+D+ L + Sbjct: 1 MSKRILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +QI++ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 GFEICRQIRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 AR 119 >gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 230 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D L + ++ +GY +G+ A + A++ + + I++D+ L E+ G Sbjct: 1 MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + KQ+++D P+I VTA + D + G + YI+KP S + +K + Sbjct: 61 MTVLKQLRQDKV--STPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +D ++ SG+ N E +L +Q PD++I D+ + ++ Sbjct: 1 MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + KQ++ED Q +PV+ +TA M D + + G +AY+ KP + ++ + Sbjct: 61 GYQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLL 120 Query: 121 -GE 122 Sbjct: 121 IRR 123 >gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + + D++I+DI + + Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 66 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL A +PD+II+D+ L ++ Sbjct: 1 MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + +E GY + +G EAL + PD+I++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S ++P+I +TA A D + G + Y+ KP S I + Sbjct: 70 VCLELRKQS---DVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRR 125 >gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 272 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALEL PD++++D+ + ++ G Sbjct: 34 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYG 93 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 94 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 149 >gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family [Dickeya dadantii Ech703] gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family [Dickeya dadantii Ech703] Length = 229 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY ++ + A+ + P+++++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRLAEPYPELVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ K +K ++ ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D +L +K R +E G +G EA+ELAR+ + D++++D+ L + G Sbjct: 1 MAKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKHDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E ++P+I +TA D+ + G + YISKP ++ IK + Sbjct: 61 YEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 241 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D E +L + +E Y+ + +G ALE A + DVI++D+ L G+E Sbjct: 9 HILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDYDVILLDLMLPGKDGIE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+I+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 69 VCKEIREH---KTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRA 125 >gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 235 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea] gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea] Length = 243 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + NG EAL + R+ P ++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + A Sbjct: 67 VCQELRKES---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 >gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D +++ + G+ + NG +AL L ++ ++I+D+ L ISG Sbjct: 5 KKILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPRISGE 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI +I+ + ++P+I +TA + + D+ G + Y++KP S+ + +K I Sbjct: 65 EICNKIRA---VSDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRR 121 >gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1431 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+DN + + L+ Y+ +G+ ALE H PD+++ D+ + + G Sbjct: 606 SARILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEALADHLPDLVLTDVMMPRLDG 664 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ ++ +EIP+I ++A A + + + G + Y+ KP S + ++ + Sbjct: 665 FGLLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFSARELLARVEATL 723 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + L+E +G + + +EAL++ Q PD+++ DI + ++ G + Sbjct: 1310 VLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSPPDILLSDIGMPDMDGYML 1369 Query: 65 TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QI+ Q +IP IA+TA+A + DE+R K G + +ISKP+ + I I Sbjct: 1370 MRQIRALPPDQGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIVNLI 1427 >gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 232 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 235 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +V+IVED +L + +G+ + +G A PDVI++D L Sbjct: 1 MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL++ ++ + DS ++IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 QSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] Length = 230 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 + +V ++VED+ +L + + + T +G EAL LAR++ PD++++D ++ I Sbjct: 1 MARVKMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ E +P+I +TA + D R + G + Y++KP S + + Sbjct: 61 SGIEVCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 231 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + ++ ++ SG+ N E EL +Q+ PD++I D+ + ++ Sbjct: 1 MSAQLLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + KQ+++D +PVI +TA M D + + G +AY+ KP + I + Sbjct: 61 GYQFLKQLRDDPRFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLL 120 >gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] Length = 230 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E G+ + NG EA+ L + PD+I++D + +SG+E+ Sbjct: 9 VLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K E + IP+I ++A + + D R + G + Y+ KP S+ M ++ + Sbjct: 69 CRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRR 126 >gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor A3(2)] gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + + + GY +G +ALE A ++PD++++DIQ+ + GL Sbjct: 15 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +L P++ +TA GD G + Y+ KP L I+ + Sbjct: 75 TAARRIRGAGDL--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132 Query: 123 A 123 + Sbjct: 133 S 133 >gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I +D + + D IE GY A+Q NG E L++ Q K D++++D+ + E+ G+E Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + IPVI VTA + + D + G + YI KP S + I+ I Sbjct: 67 ALRELRTS---RRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR 122 >gi|126031095|pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D53a And Y102c Length = 127 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++ L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K ++ +S ++IPV+ +TA + D R + G + I+KP S + IK + Sbjct: 61 GIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106] gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106] Length = 1361 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++IV+D+ +N+++ + + Y Q +G+EA+E+ PD+I++D+ + ++G Sbjct: 891 KILIVDDDPINLQVLVNYLCLQNYAVTQASSGIEAMEILEAGYIPDLILLDVMMPRMTGY 950 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T++I+E ++P++ +TA D + G Y+SKP++ + IK +I Sbjct: 951 EVTRRIRETWPPHQLPIMMLTAKNQVSDLVAGLEVGANDYLSKPLNKDELLARIKTHIR 1009 >gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina] gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina] Length = 248 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL L ++ P++I++DI + ++ G Sbjct: 11 KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMIPKLDGYG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 71 VCQEIRKES---DVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRR 126 >gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 247 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + +E SG+ + N +AL+L +P +II DI + + G + Sbjct: 19 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTAQPQLIISDIMMPGMDGYQ 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+++ +PV+ +TA M D + + G +AY+ KP + + I + Sbjct: 79 FLAQLRKLEPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIERS 138 >gi|320160702|ref|YP_004173926.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994555|dbj|BAJ63326.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 381 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 70/122 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D+ ++L ++E GY L NG +A+ +AR +PD+I++D+ + ++ Sbjct: 1 MAEKILIVDDDVQTLRLVGLMLERQGYKILAASNGTQAISMARTERPDLILLDVMMPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++++ E +IP++ TA A D+ + G + Y++KPI + ++ + Sbjct: 61 GFSVARTLRKEPETADIPILMFTAKAQVEDKIAGYEAGADDYLTKPIHPAELTAHMRAIL 120 Query: 121 GE 122 Sbjct: 121 SR 122 >gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++++D L R + G+ + NG E L+ R DV+++D+ + ++ G + Sbjct: 5 RVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDMDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++E + +P++ +TA D+ G + Y+ KP+ + I + + Sbjct: 65 VCKKMRE---IAPVPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRS 121 >gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D +L R+ ++ SGY + +G AL L D++I+D+ + + G Sbjct: 1 MAKILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ + PVI +TA + D+ +GG + Y+ KP S + +K + Sbjct: 61 MSCLREMR--TRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLN 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 265 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 28 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKD 87 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 88 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 144 Query: 121 GE 122 Sbjct: 145 RR 146 >gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 235 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G E ELA KPD+I++D+ L + G Sbjct: 1 MTKILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+++ SE ++P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLR--SEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 238 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D + +L + +E GY+ + NG +AL +A + I++DI + E GLE+ Sbjct: 7 VLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIMMPEKDGLEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 67 CAELREK---KTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRS 122 >gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] Length = 230 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + L ++ GY +G EAL +A + PD++I+D L ++S Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ +E + +P+I +TA + D R G + Y+ KP S+ ++ + Sbjct: 61 GIEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621] gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621] gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + +EALEL + + D+II+D+ + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G EAL ++P+++++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRSK---HNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRR 121 >gi|153873132|ref|ZP_02001814.1| signal transduction histidine kinase [Beggiatoa sp. PS] gi|152070402|gb|EDN68186.1| signal transduction histidine kinase [Beggiatoa sp. PS] Length = 480 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + + + L+ + Y + +G EAL A + PD+I++D+ + + G E Sbjct: 6 RLLIVDDEKRGREALKILLASENYQLILAASGEEALLKAPELVPDLILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+ +L E+P+I +TA + + R + G + +I KP + ++ I Sbjct: 66 VCQHIRAHPQLGEVPIIMLTAMSDRKTRLRGIEAGADDFIIKPFDRVELLARVRTIIR 123 >gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+E ++ R +E+ GY R+G ALEL R+ +II+D+ L +S Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ ++ + P+I +TA + D+ + G + Y+SKP ++ + I+ + Sbjct: 61 GLEVCQRLRSENVV--TPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + +EAL+L + K D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E+ GY G +A ++ PD++++D L +S Sbjct: 1 MGARILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ ++ +++P+I +TA + + R G + YI KP S+ + +K + Sbjct: 61 GIELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603] gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + +EALEL + + D+II+D+ + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1383 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + + L+ Y +G+ ALE R+H PD+++ D+ + ++G E Sbjct: 631 RILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHPPDLVLSDVMMPRLNGFE 689 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ + +E+P+I ++A A + K G + Y+ KP S + I+ + Sbjct: 690 LLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATL 746 >gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] Length = 238 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D ++L + +E G+ LQ G +AL+L + + D +I+D+ L I Sbjct: 1 MKKTILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K I+ + +PV+ +TA + + D + G + Y+ KP + + +K + Sbjct: 61 GLEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|154493674|ref|ZP_02032994.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] gi|154086884|gb|EDN85929.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184] Length = 1348 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++ +DN+ ++ + + YI ++ NG EAL + + P ++I DI + E++GL Sbjct: 1097 QTVLLADDNQEVLQYLEQQL-SLDYIVVKAFNGKEALAMIEESYPHIVISDIMMPEMNGL 1155 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K+IKE+ IPVI +TA +M E G + YI KP +S+ I+ + Sbjct: 1156 ELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNLL 1213 >gi|46014956|pdb|1NXT|A Chain A, Micarec Ph 4.0 gi|116666721|pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site Length = 120 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + + + GY + NG EALE +PD+II+ + L EI G Sbjct: 1 MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILXLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++ +P++ ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + D+II+DI + + Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 66 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family), BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278] Length = 231 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D+ ++ R + +G + +G AL +PD+I++D+ + E Sbjct: 1 MSPRILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVGMPEFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ ++P++ ++A + D + G + Y++KP S + + + Sbjct: 61 GLEVCRRIR---RTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 240 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 68/119 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ ++E +G+ ++ + +A + + PD+I++D L +SG+E Sbjct: 6 ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLPGVSGVEW 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K+D +E+P+I +TA + D+ R + G + Y++KP S + I+ + + Sbjct: 66 ARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRRS 124 >gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + +G +AL ++P++I++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ + P+I ++A + D+ + G + YI KP + ++ + Sbjct: 65 QVCREIRSKAAT---PIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRR 121 >gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 239 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1341 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN +++ ++ T Y L NG+EALE + D+I+ D+ + + G + Sbjct: 1094 ILLVDDNTQLLEMMEKILATK-YRVLTAENGLEALEQLKASAVDLIVSDVMMPGMDGFAL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K E IPVI +TA D + G + Y++KP L + I + Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLL 1208 >gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 230 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ + R ++ G+ ++ +G++ L LA+ PD+I++DI + EI G Sbjct: 1 MTKILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADSPDLILLDIGMPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +S +P+I +++ + D + G + Y++KP S +K + Sbjct: 61 TEVCRRLRRESR---VPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I +D + L + +E Y NG EAL L Q+K ++II+D+ + ++ G+E Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D+ G + YI+KP S++ + IK + Sbjct: 65 VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120 >gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA3] gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA2] gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL097PA1] gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL099PA1] gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266] Length = 232 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + ++ SGY +G+EAL PD +IMD+ + + Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE T+ ++ + ++P++ +TA D G + Y+ KP +L + ++ Sbjct: 61 GLEATRMLRSNGN--DVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 265 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L +E SG+ +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L IK + + Sbjct: 65 CQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 >gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 239 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] Length = 237 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K+++ + ++IP+I +TA + + D+ G + Y++KP S + IK + Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 232 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +IV+D L +E GY ++ +G EA+ + + D++++DI + ++ Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+Q++ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQVRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ ++L R +E +G+ +G A L RQ +PD++I+D+ L + G +I Sbjct: 4 VLVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPDEDGFDI 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ D +P+I +TA D + G + YI KP + + +K + Sbjct: 64 ARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRR 121 >gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803] gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + +EALEL + + D+II+D+ + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] Length = 233 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] Length = 244 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++IV+D + + + GY +G +ALE A ++PD++++DIQ+ + G Sbjct: 10 TQRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L ++I+ + P++ +TA GD G + Y+ KP L I+ + Sbjct: 70 LTAARRIRAAGDT--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLR 127 Query: 122 EA 123 + Sbjct: 128 RS 129 >gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 223 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D + +L R +E G+ ++ +G L + + D+I++DI + ++ G Sbjct: 1 MATILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++E S+ +P+I +TA + + D + G + YI KP S + + + + Sbjct: 61 YRFCMHVRERSQ---VPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 228 Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I+ED +L +E G+ +G+ LE AR KPD+I++D+ L + Sbjct: 1 MKQRILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDSKPDLIVLDLMLPGML 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K +++D+ IPV+ VTA + D + G + YI KP S+ I+ + Sbjct: 61 GTEVCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ L+E+ G+ G AL L R +PD++++D+ L + Sbjct: 1 MSTRILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + + I+E+S ++P+I ++A D + G + Y++KP S+ + +K + Sbjct: 61 GVSVCRLIREES---DVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 231 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY ++G EAL+L +PD +++D+ + + Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] Length = 230 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + L ++ GY +G EAL +A + PD++I+D L ++S Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ +E + +P+I +TA + D R G + Y+ KP S+ ++ + Sbjct: 61 GIEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 231 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E L R +E GY G EA R+ +PD++++D L +SG Sbjct: 1 MPKVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ +E + +PVI +TA + + R G + Y+ KP S+ M ++ + Sbjct: 61 IELCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37] gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37] Length = 228 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ L R +E +G+ + +G AL A + PD+I++DI L E+ G E Sbjct: 2 KILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPEMDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ S ++PV+ +TA + D + G + Y++KP S + + + + Sbjct: 62 VCRRLRARS---DVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRS 118 >gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 228 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D+E +L + + + +G A+ L ++++PD+I++DI L G Sbjct: 5 KKILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLPGKDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I++ ++P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 DVCREIRK---TSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 229 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + + R + GY L +G EA+ +A + PD+I++DI L + Sbjct: 1 MNEKILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIMLPKQD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E P+I +TA + D+ + G + YI+KP S+ M +K + Sbjct: 61 GFSVCKKLREKITS---PIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 237 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + Y +G EAL++ KP++I++D+ L + G Sbjct: 5 QKILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ S+ +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCRELRSSSQ---VPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis] gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein Length = 243 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + NG EAL + R+ P ++++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++++S ++P+I +TA D + G + Y+ KP S I+ + A Sbjct: 67 VCQELRKES---DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 >gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 227 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D + ++ + +E G+ + T +G AL + PD+II+D+ L EIS Sbjct: 1 MPKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+++S +P+I +TA D+ + G + Y++KP + +K + Sbjct: 61 GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi] gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi] Length = 239 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D K+ + GY + +G EA+ L Q +P+++I+DI L ++ G Sbjct: 9 KILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIMLPKLDGYT 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ S +P+I +TA D + G + Y+ KP ++ + + Sbjct: 69 VCSELRKKS---NVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRS 125 >gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 248 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G+EALE RQ PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++D+ L + + +GY +G + L + D++I+D+ + + Sbjct: 1 MSSNILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ QI+E ++PV+ +TA D + G + Y+ KP +++ + I+ + Sbjct: 61 GWQVCGQIRE---YYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L R +E G+ +G+ ALE+ ++ PD++I+D+ L E+ G E+ Sbjct: 6 ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQ++ ++ +P++ +TA D+ + G + Y++KP + + +K + Sbjct: 66 CKQLRAQND--PLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRR 121 >gi|167630424|ref|YP_001680923.1| response regulator receiver modulated serine phosphatase [Heliobacterium modesticaldum Ice1] gi|167593164|gb|ABZ84912.1| response regulator receiver modulated serine phosphatase [Heliobacterium modesticaldum Ice1] Length = 394 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 66/117 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L R + +GY L NG +ALE ++ PD+I++D+ + ++G E+ Sbjct: 12 ILVVDDVVTNVELMRLQLTRAGYQVLTAFNGEQALESIQRTLPDLILLDVMMPGMNGFEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++KED Q IPV+ VTA D + + G + +ISKP + + +K + Sbjct: 72 CAKLKEDPHTQLIPVVLVTALHEVEDRIKGIEAGADDFISKPFNRVELLTRVKSLLR 128 >gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58] gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 456 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + +G +AL + + + D+I++DI + + Sbjct: 1 MTARVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALAICDEEQVDIILLDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKANPNTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 67.5 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ + + + ++ AL A +++I++ ++ L Sbjct: 156 RVLVADGRASSQERIIRALKPV-AEVDAVTEPQAALLKAASSPFELVIVNSNFEDYDPLR 214 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q + + +P++ V R G YI +PI + + I Sbjct: 215 LCSQFRSLERTRFLPLLLVAEQGADEMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273 >gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 235 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + L +E +G+ + +G EALE +P +II+D+ L ++ Sbjct: 1 MGKKILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K++++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCKRLRQQQIM--TPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + R + +GY + +G++ALE+ + +P ++I+D+ + + GLE Sbjct: 2 KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + + P++ +TA D G + Y++KP +L + ++ + + Sbjct: 62 VCRHLRSEGDDR--PILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 119 >gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D L + +E +GY +G A EL + D I++D+ L + G Sbjct: 1 MAKILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K I++D PVI VTA + D + G + YI+KP S + +K + Sbjct: 61 MTVLKTIRQDKI--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 257 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ ++ + +G + +G AL A H+PD++++D+ L + GLE Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 78 VCRRMRERHP---VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133 >gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 230 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D + + + + +E GY + +G +AL + D++++D+ L ++ Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+++E ++P+I +TA A + D+ + G + YI+KP + + I+ Sbjct: 61 DGFSVCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRAN 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 227 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D ++ R E G+ + +GM+A+E+ R+ D+IIMD+ + E+ G Sbjct: 1 MSRILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ ++ P+I ++A + D+ + G + Y+ KP S M + I Sbjct: 61 FSACREIRK---FKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] Length = 238 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I +D + L + +E YI +G EAL L Q+K ++II+D+ + ++ G+E Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKVDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D+ G + YI+KP S++ + IK + Sbjct: 65 VCRRLRNKT---NIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRR 120 >gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51] gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + + ++ G+ NG+ AL L +++ D++++D+ L +SG E Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLPGLSGEE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+I++ S +P+I +TA D G + YISKP S + +K + Sbjct: 62 ICKEIRKISA---VPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRR 117 >gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + + D++I+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36] gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36] Length = 237 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 62/125 (49%), Gaps = 5/125 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +++V+D+ +L + ++ +G+ L G E + + PD+I++D+ + Sbjct: 1 MSTKKQILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKEMQRVLATNTPDLIVLDVMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + ++I+ ++P+I +TA + + D + G + Y++KP S + IK Sbjct: 61 DDGFTLCQKIR---RTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKA 117 Query: 119 YIGEA 123 + + Sbjct: 118 LLRRS 122 >gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] Length = 266 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L ++ +++I+D+ + ++ Sbjct: 30 MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLMMPKV 89 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + IP++ +TA + D+ G + YI+KP S+ + +K Sbjct: 90 DGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 146 Query: 120 IGE 122 + Sbjct: 147 MRR 149 >gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 227 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ L ++ GYI + +GMEAL+ Q PD+I++DI + ++ G Sbjct: 1 MTRILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDPPDLIVLDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE K ++++++ +P++ V+A A D+ G + Y+ KP + +K + Sbjct: 61 LEFCKYVRKNNQ---VPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 232 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + + ++ GY + +G AL+LA PD+II+D+ L + G E Sbjct: 5 RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K + E IP+I +TA + D + G + Y+ KP SL+ + + + Sbjct: 65 VCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123 >gi|254411354|ref|ZP_05025131.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181855|gb|EDX76842.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 483 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D+ N+++ + + ++G+ +G ALE P ++++D+ + I G E Sbjct: 28 ILIIDDSPNNLEILSETLTSAGFEIAVALDGETALEQIAYDPPTLVLLDVMMPGIDGFET 87 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + EIP+I +TA D+ + G YI+KP + +K ++ Sbjct: 88 CRRLKSNPDTHEIPIIFMTALTDTIDKVKGLNLGAVDYITKPFQQEEVLARVKVHL 143 >gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED +D +E GY + +G E L+ KPD++++D+ + ++ G Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ + +P++ +TA D G + Y+ KP S + ++ + Sbjct: 61 FALCAELRRLAN--PVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 263 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ ++L + GY L+ + EAL++ D+ I+DI L + G Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +Q++ + + PV+ ++A + D+ + G + YI+KP S+ + IK Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 >gi|73748021|ref|YP_307260.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73659737|emb|CAI82344.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 233 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 ++K ++IV+D+ + +K + G++ NG EAL + Q+ PD+I++D+ + + Sbjct: 1 MRKNNILIVDDDPIIIKFVKANFVADGWLVTTANNGQEALRILNQNIPDIIVLDVLMPVM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E QI++ S IP+I ++A D+ + K G + Y++KP + ++ Sbjct: 61 DGMETCIQIRKQS---SIPIIMLSAKGSSFDKIQCLKLGADDYLTKPFDIDELTARVESV 117 Query: 120 IGEA 123 + A Sbjct: 118 LRRA 121 >gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] Length = 238 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] Length = 236 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E L R +E GY G EA R+ +PD++++D L +SG Sbjct: 6 MPKVLIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWMLPGLSG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ + + +PVI +TA + + R G + Y+ KP S+ M ++ + Sbjct: 66 IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 125 Query: 122 EA 123 A Sbjct: 126 RA 127 >gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 247 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E ++L + G++ +G AL LA + D I++DI L ++ Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ S+ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 68 GIEVCKRLR--SKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAIL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] Length = 232 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY L+ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 242 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L ++ + + NG +AL + + D++++D+ L E+SG Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ D + PVI +TA + D+ + G + Y+ KP S + I + Sbjct: 61 EEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 229 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++VED+ ++ ++ GY + + G EAL ++ PD++I+D+ L ++ G Sbjct: 3 TAKILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q++ IPVI V+A + D+ G + Y++KP S + + +K + Sbjct: 63 LEVCRQLRAKYA---IPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + GY + +G EAL R PD+I++D+ + ++ G Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P+I +TA D + G + Y++KP S I + Sbjct: 67 VCQELRKES---DVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRR 122 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++V+D E ++L + GY +G AL+LA D I++DI L ++ Sbjct: 1 MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+ P++ V+A + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRIRAKGIT--TPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D+E ++ + ++GY + NG EA + KPD++++DI L + G+E Sbjct: 7 KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLPGVDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++ SE IPVI +TA D+ + G + YI KP + +K + Sbjct: 67 VLKWIRKSSE---IPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRR 122 >gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + R + GY +G++AL + PD++++D+Q+ + GL Sbjct: 10 RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGLT 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ +P++ +TA GD G + Y+ KP L I+ + + Sbjct: 70 AARRIRASGST--VPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 127 >gi|302342093|ref|YP_003806622.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] gi|301638706|gb|ADK84028.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfarculus baarsii DSM 2075] Length = 518 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 68/119 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IV+D +N+++ +L G + +G ALELAR+ PD++++D+ + ++G Sbjct: 12 ARILIVDDEPINIEIMSELFSLHGAETISASDGATALELARREMPDLVLLDVMMPGMNGY 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + +PV+ VT D+ + + G + ++SKP+ ++ + + + Sbjct: 72 EVCRRLKADEVTRRLPVVMVTGLGQIDDKIKGLEAGADDFLSKPVHMAELVTRTRSLLR 130 >gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 1139 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN L++ S Y +G AL+ A +H PD+I+ DI + + G Sbjct: 644 ARILLADDNADMRDYVMRLLKGS-YRVEAVADGEAALKAALKHPPDLILSDIMMPRLDGF 702 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ + + IPVI ++A A + G + Y++KP S + ++ ++ Sbjct: 703 GLLREVRNNPSTRLIPVILLSARAGEESRVEGLGHGADDYLTKPFSAHELLARVRSHLR 761 >gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sinaloensis DSM 21326] gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sinaloensis DSM 21326] Length = 1128 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 60/115 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + GY ++G EALE +P+++++DI + +SG ++ Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVSTAKDGHEALEKVAIERPELVLLDIMMPGMSGYQVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ + + ++PVI +TA D R G Y+SKP + I ++ Sbjct: 785 ETLRLEYDHSQLPVIMLTALNQADDRVRGFNAGANDYLSKPFNKQELAARILAHL 839 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + R + +GY + +G++ALE+ + +P ++I+D+ + + GLE Sbjct: 25 KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRMDGLE 84 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + + P++ +TA D G + Y++KP +L + ++ + + Sbjct: 85 VCRHLRSEGDDR--PILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 142 >gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 229 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +L GY T +G EAL LA + PD++++D + SG+E Sbjct: 5 KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + E +P+I +TA + + D R + G + Y++KP S + + + Sbjct: 65 VCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRR 123 >gi|86607343|ref|YP_476106.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555885|gb|ABD00843.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 121 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 72/120 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED++ ++ L++ +G+ + +G+EA+E +Q+KPD+I++DI + ++G Sbjct: 1 MSRVLVVEDSQSQREMIGKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K D Q+ P++ ++ + D + G +AYI+KP + TIK+ + Sbjct: 61 YEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGLRQGADAYIAKPFQPQELVGTIKQLLR 120 >gi|54303563|ref|YP_133556.1| putative DNA-binding response regulator [Photobacterium profundum SS9] gi|46916994|emb|CAG23756.1| putative DNA-binding response regulator [Photobacterium profundum SS9] Length = 241 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++V+D++ +L + + SG+ G E PD+I+MD+ + G Sbjct: 5 KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRLAGGYPDLILMDVMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ ++P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 65 TLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121 >gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132] gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819] gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1] gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus] gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819] gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED133] gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus JKD6159] gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03] gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00] gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus CGS01] gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21189] Length = 233 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] Length = 237 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + +I Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED E ++ + ++ GY A G E L R+ + D+I++DI L E+S Sbjct: 1 MTHRILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+I+ + PVI +TA + D+ + G Y++KP + + I+ + Sbjct: 61 GIDVLKRIRATE--SQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118 >gi|284051798|ref|ZP_06382008.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 558 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++IV+D+ +N+++ + + Y Q NGMEALE+ PD+I++D+ + ++G Sbjct: 94 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 153 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T++I+ED ++P++ +TA D + G Y+SKP++ + IK +I Sbjct: 154 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIR 212 >gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] Length = 238 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV+IVED E +L +D +E SG+ ++G L LA ++II+D+ L + Sbjct: 9 MSEKVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +Q++E + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 69 GFEICRQVREQ---KNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 125 Query: 121 GE 122 Sbjct: 126 AR 127 >gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 645 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 63/117 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ D++E +G+ + +G A+E+ PD+I++DI + + G E Sbjct: 10 ILIVDDTPTNLEMLLDILEDAGFKVVVAEDGESAIEMVEYAPPDLILLDILMPRLDGFET 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++K + + +IP+I +TA ++ + G Y++KP + I ++ Sbjct: 70 CRRLKSNPKTADIPIIFMTALIDNVEKLKGLNLGAVDYVTKPFEHEEVLARINIHLR 126 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLE 63 ++V+D + + L+E Y L NG+EA+EL +HK +++MDI + + G Sbjct: 523 LLVDDEAGIRETTKILLENYNYQVLTANNGIEAIELYAQYEHKVSLVLMDIMMPAMGGDT 582 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++ + E+ +I ++ + K +A++ KP + + TI Sbjct: 583 AIRTLQKMN--PEVKIIGISGLISSEKLSQEMKMKTQAFLPKPYTAQELLHTI 633 >gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 228 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 68/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +++ + T GY + NG+EA+E A+++KP +II+D+ + E+ G+E Sbjct: 7 KILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVMMPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E+S+L E + +TA + G + YI+KPI + + +K + Sbjct: 67 ACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125 >gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family [Rahnella sp. Y9602] gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family [Rahnella sp. Y9602] Length = 229 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +GY A++ + A+ + P++I++D L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLVEPYPELILLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K ++ +EIPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|312130834|ref|YP_003998174.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907380|gb|ADQ17821.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1291 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN ++ ++++ Y + +GME +A++ PD+II DI + ++ G+E+ Sbjct: 1047 LLVEDNREIRQMIKEILSPY-YQIREATDGMEGWNMAQEISPDLIISDIMMPQMDGIELC 1105 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K D + IPVI +TA A ++ + G +AYI+KP S ++ + IK + Sbjct: 1106 GKLKTDPKTSHIPVILLTARATVAYKQEGYETGADAYITKPFSPNLLLVRIKNLL 1160 >gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 227 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED+E ++L ++++G+ ++G EAL AR+ P II+D+ L + Sbjct: 1 MSKDSILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTPPAGIILDLMLPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K++K D + P+I +TA + D + G + Y+ KP S + ++ Sbjct: 61 DGFEVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAV 120 Query: 120 IGE 122 + Sbjct: 121 LKR 123 >gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144] gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144] gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis FRI909] Length = 241 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + R+G EA ELA ++ I++D+ L E+ Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 219 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG +AL + + D +I+DI + E++G+E+ Sbjct: 2 LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIMMPEMNGIEVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603] gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621] gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621] gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603] gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 218 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|262172302|ref|ZP_06039980.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus MB-451] gi|261893378|gb|EEY39364.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio mimicus MB-451] Length = 1112 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E LE ++ KP+++++DI + +SG ++ Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 767 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 768 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 822 >gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] Length = 241 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED + +E Y +G A+E ++H D++I+D+ L ++SG Sbjct: 6 KRILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLMLPKLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ ++ +P+I +TA D + G + Y+ KP S + ++ Sbjct: 66 RVCRAIR---DVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|29349532|ref|NP_813035.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341441|gb|AAO79229.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1450 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE ++++ + Y + NG E L+ A + PD+II D+ + + GLE Sbjct: 1192 TILVVEDNEELKAFLKNIL-SENYTVITASNGKEGLQHAVDNIPDLIISDVMMPVMDGLE 1250 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QIKE++ + IP+I ++A A D + G + YI+KP S + I + + Sbjct: 1251 MIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309 >gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4] gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5] gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus 273-4] gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 254 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++V+D+ L + +E G++ +G + +L ++ ++++D+ L G Sbjct: 11 TQRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGEDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I K+++ED+ +IP+I +TA D + G + Y+ KP + + IK + Sbjct: 71 ISICKRLREDNG--DIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLR 128 Query: 122 E 122 Sbjct: 129 R 129 >gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D +L +K R +E G +G EALE A+ + D+I++DI L + + Sbjct: 1 MGKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLPKYT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+E ++PV+ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFEVCQMIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 242 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA+E ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 275 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 54 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 113 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 114 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 168 >gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus 132] gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754] gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus MR1] gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796] gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus] gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus] gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus subsp. aureus TW20] gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus aureus 04-02981] gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754] gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796] gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED133] gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus T0131] gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21189] gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21172] gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21193] Length = 241 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + NG EA ELA ++ I++D+ L E+ Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 232 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + ++ SGY +G+EAL PD +IMD+ + + Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE T+ ++ + ++P++ +TA D G + Y+ KP +L + ++ Sbjct: 61 GLEATRMLRSNGN--DVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D ++L + +G+ + NG EA+E A +PD+I++D+ + + G Sbjct: 5 AKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T+++++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 65 EVTRRLRDAGRTY--PVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842] Length = 228 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + + D++I+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13] Length = 228 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +ET+GY +G A E P+++++D+ L I G+E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS +PVI +TA D+ + G + Y+ KP + +K + Sbjct: 67 VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122 >gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 235 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 1/124 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59 M ++++IVED ++ +G+ + T NG EA+ L Q PD++++D+ L I Sbjct: 1 MSERILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ K +++ ++IP+I +TA D+E G + Y++KP S+ + +K Sbjct: 61 SGYDVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKAL 120 Query: 120 IGEA 123 + A Sbjct: 121 MRRA 124 >gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D+ +L + GY + G ALE+ PD++++D+ L E+ G Sbjct: 1 MLKILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+I++ P+I +TA D+ + G + Y+ KP + +K + Sbjct: 61 YDVCKEIRKQHRT---PIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781] gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763] gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719] gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781] gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763] gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719] gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] Length = 244 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + NG EA ELA ++ I++D+ L E+ Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 64 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] Length = 247 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + NG EA ELA ++ I++D+ L E+ Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 67 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621] gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + +EAL+L + + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y++KP + + +K + Sbjct: 61 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 70/119 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + ++L + SGY + NG++A++LA++ P ++++D+ + + G + Sbjct: 5 KILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGYD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+ D++ ++I VI +TA + D+ + G + Y++KP S+ + IK + Sbjct: 65 VCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRR 123 >gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + L + SG+ L G +AL R+ PD++++D+ L ++SG Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QIK D + +PV+ +TA + D + G + Y++KP S+ + +K + Sbjct: 61 TEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1] gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1] Length = 223 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + L + ++GY NG EA+++ + D++++DI + + GLE Sbjct: 3 ILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIMMPFMDGLEA 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ ++P+I +TA + D K G + Y+ KP S + I+ + + Sbjct: 63 AQEIR---TFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRS 118 >gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 248 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EAL+L +PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM] gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] Length = 238 Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D ++L + +G+ + NG EA+E A +PD+I++D+ + + G Sbjct: 11 AKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T+++++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 71 EVTRRLRDAGRTY--PVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha proteobacterium HIMB114] gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha proteobacterium HIMB114] Length = 226 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 68/123 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV +VED + + L ++ G+ + NG EAL ++ +PD++++D L ++S Sbjct: 1 MDAKVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPDLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I + +K+D + Q++P+I +TA + D+ G + YI+KP + + I + Sbjct: 61 GIDICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] Length = 244 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ PD++++D + S Sbjct: 16 MARRILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 75 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K DS +++PV+ +TA + D + + G + Y+ KP S + +K + Sbjct: 76 GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 135 Query: 121 GE 122 Sbjct: 136 RR 137 >gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+E ++ ++ G+ + +G +ALE+ R KPD++++D+ L + Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +QI+ +S+ P++ +TA + D R + G + Y+ KP + + ++ + Sbjct: 61 GIEVCRQIRAESDS---PIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+++VED+ +L GY T +G EAL LA + PD++++D + Sbjct: 1 MSAPKLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGT 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ +P+I +TA + + D R + G + Y++KP S + + Sbjct: 61 SGIEVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] Length = 229 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L +D +E SG+ +G L+ A D++I+D+ L + G Sbjct: 1 MSKILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++++ + + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICRKVRAE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110] gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110] Length = 235 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED KL + +E + + +G+ AL+L +Q PD+I++D+ L ++ GLE Sbjct: 2 KILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQAPDLIVLDLMLPKLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +I++ ++ ++ +TA + D G + Y+ KP S + ++ + + Sbjct: 62 VCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRS 121 >gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] Length = 234 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + +++IV+D ++ +E + + L+ N E+ +PD++++D L + Sbjct: 1 MSRNRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G+E+ +++K D E+P+I +TA + + ++ + G + YI+KP S + IK Sbjct: 61 TGIELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAV 120 Query: 120 IGEA 123 + A Sbjct: 121 LRRA 124 >gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] Length = 237 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+K +++I+D+ + +I Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ + IP++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] Length = 223 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED+ +L ++ ++ +GY +G+EAL L + D+I++DI L +I G Sbjct: 1 MQRILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ S ++P+I +TA + + D+ + + YI+KP S+ + + I + Sbjct: 61 YGVCELIRKQS---DVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus] Length = 239 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 7 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 67 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ K++IV+D++ L +E G + + +EAL+L + K D+II+D+ + + Sbjct: 5 MMESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVMMPNM 64 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ +I+E+ + +P+I ++A + D+ + G + Y+SKP + + +K Sbjct: 65 DGIEVCMKIREE---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQ 121 Query: 120 IGE 122 + Sbjct: 122 LRR 124 >gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family [Thioalkalivibrio sp. K90mix] Length = 229 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++VED+ ++ + + +GY + + A L + PD+I++D L + S Sbjct: 1 MAVKILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ + +K ++IP+I +TA + D R G + Y++KP S + IK + Sbjct: 61 GLDWARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W] gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W] gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 218 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 232 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + ++ SGY +G+EAL PD +IMD+ + + Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE T+ ++ + ++P++ +TA D G + Y+ KP +L + ++ Sbjct: 61 GLEATRMLRSNGN--DVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] Length = 238 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++DI + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122 >gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus ATCC 53653] gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus ATCC 53653] Length = 262 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ + +G+ + +G AL A PD++++D+ L + GL+ Sbjct: 9 RVLVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLMLPGMDGLD 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 69 VCRALRGKGP---VPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124 >gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 233 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGL 62 +++VED ++ +E +G+ LQ + EA H+P +I++D L SG+ Sbjct: 5 TILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDHRPAMILLDWMLPGNQSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++K+D L EIP+I +TA + ++ + G + YI+KP S + IK + Sbjct: 65 DLCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124 Query: 123 A 123 + Sbjct: 125 S 125 >gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676] gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676] Length = 218 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] Length = 230 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D ++ +E + Y L+ + EA L +PD+I++D L SG+ Sbjct: 4 KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKQPDLILLDWMLPGTSGV 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K++ EIP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 >gi|146306940|ref|YP_001187405.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145575141|gb|ABP84673.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 787 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V++VEDN +N + + ++ G L +G EALE + D+++MD + + G Sbjct: 663 SARVLLVEDNPVNQMVAKGMLAKLGCQVLVAGHGGEALEALEREPVDLVLMDCNMPVMDG 722 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I+ + E+P++A+TA A+ + ER R G Y++KP + ++ Sbjct: 723 YEASRRIRANGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDSWL 781 >gi|86609393|ref|YP_478155.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557935|gb|ABD02892.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 121 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 72/120 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED++ ++ L++ +G+ + +G+EA+E +Q+KPD+I++DI + ++G Sbjct: 1 MSRVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K D Q+ P++ ++ + D + G +AYI+KP + TIK+ + Sbjct: 61 YEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLLR 120 >gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299] gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115] gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300] gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224] gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948] gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937] gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299] gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115] gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300] gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224] gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948] gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937] gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] Length = 247 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + NG EA ELA ++ I++D+ L E+ Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 67 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 233 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+MIV+D+ +L L+ SG+ A + +G EAL+ PD++I+D+ + + G Sbjct: 3 MSKIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVMMPNMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ E +PVI +TA + + G + Y++KP + ++ + Sbjct: 63 FELCRHLRRYYE--NLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] Length = 226 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED+ +L ++ G+ +G E L +A+ D+I++D+ L ++S Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+E ++P+I +TA D+ G + Y++KP S + IK + Sbjct: 61 GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|126031096|pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D53a And Y102c Length = 127 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ ++ + A+ + PD+I++ L S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + I+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 238 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + +L + +E + + +G ALE A + DVII+DI + E G+E Sbjct: 6 KILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++++ ++ PVI +TA + + + + G + YI KP S + +K + Sbjct: 66 VCKELRKE---KDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRR 121 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++++ED+ + +E GY + NG + + + ++ D++++DI L ++ Sbjct: 1 MDKKILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ QI+E +IP+I +TA + D+ + G + Y++KP + + I+ ++ Sbjct: 61 GMEVCSQIRE---FSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + L + SG+ L G +AL R+ PD++++D+ L ++SG Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QIK D + +PV+ +TA + D + G + Y++KP S+ + +K + Sbjct: 61 TEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|152986115|ref|YP_001350288.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961273|gb|ABR83298.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 227 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++D+ L I G Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120 >gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] Length = 226 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I++D ++L + +E +GY + +G + ++ +PD+I++D L ISG Sbjct: 1 MKKILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ K+I+ D L++IPVI +TA M+ D+ + G + YI+KP S+ + I + Sbjct: 61 IDLLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 234 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + +E +GY L G E L++A +PD+I++D+ L + Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EIT +++E S ++ ++ +TA + + D + G + Y++KP S + ++ + Sbjct: 61 GMEITARLREKS---DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 242 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E + A+Q PDV+I D+ + G Sbjct: 16 RILLVDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKAQQIVPDVVISDVMMPRCDGYG 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ED L PVI +TA M D + + G + YI KP + ++ + Sbjct: 76 LLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELIARVRNVVKR 134 >gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 225 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I++D++ + R + GY G E L L + +PD+II+DI + ++ Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K++++D IP++ VT D + G + Y+ KP + + +K + Sbjct: 61 GLEVCKRLRKD---AGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 232 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L ++ GY ++ +G EA+ + + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 240 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQE 58 M K+++++ED+ +L D + + Y G E L+L ++ D++++D+ L + Sbjct: 1 MSKQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPD 60 Query: 59 ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+++ ++I+ +++ ++P+I +TA D + G + YI+KP + I Sbjct: 61 MDGMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120 Query: 117 KKYIGE 122 + I Sbjct: 121 RAVIRR 126 >gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 40B] Length = 1128 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y+SKP + I+ ++ Sbjct: 786 ELRETHDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839 >gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 228 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++L ++ GY NG EA+ AR+ PD+II+DI + ++ G+E Sbjct: 7 KILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ E + ++ +TA + + E G + YI+KPI + I + Sbjct: 67 ACRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRR 125 >gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] Length = 234 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + + + GY +G EA++ + PD++I+D+ L + Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ +L +I VTA A + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228] gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144] gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228] gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis] gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144] gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909] gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU144] gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU028] Length = 233 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254444474|ref|ZP_05057950.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258782|gb|EDY83090.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 482 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 4/125 (3%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M K +++V+DN + L+ Y L +G+ ALEL +H PDVI++D+ + Sbjct: 1 MPKNPLSTILVVDDNLGARRSIEALLTQESYRFLLADSGVVALELLEEHTPDVILLDVMM 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +SG E ++I+ +S + EIP+I +TA + + G + ++SKPIS I Sbjct: 61 PGMSGFETCQKIRANSRVSEIPIIMITALDDEESMIQGIDAGADDFLSKPISKIELRSRI 120 Query: 117 KKYIG 121 + + Sbjct: 121 RSILR 125 >gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 237 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + + GY + +G EAL+ + +PD++++DI L + Sbjct: 1 MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|258591258|emb|CBE67555.1| Two-component response regulator (fragment) [NC10 bacterium 'Dutch sediment'] Length = 329 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN N++L L+E GY + +G+EAL PD+I++DI + ++ G Sbjct: 12 RLLVVDDNAQNIELLTALMEAEGYEVISAADGLEALTHVAAAPPDLILLDIMMPKLDGYA 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++KE++ + +P++ +TA + R + G + +I+KP S + I+ + Sbjct: 72 VCRRLKEEAATRLVPIVLLTALGAEEARIRGIEAGADDFITKPFSRTELKARIRSLLR 129 >gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus pseudintermedius ED99] Length = 241 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ +++V+D KL + +E GY+ + +G EAL++A ++ I++D+ L E+ Sbjct: 1 MMTNEILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +++E L++ P+I +TA + + + G + YI KP S + +K Sbjct: 61 DGLEVAVKLRE---LKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKAL 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] Length = 237 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ + PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] Length = 233 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGND 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Leuconostoc gasicomitatum LMG 18811] gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D L + +E +GY +G A EL + D I++D+ L + G Sbjct: 1 MTKILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K +++D PV+ VTA + D + G + YI+KP SL + +K + Sbjct: 61 MTVLKNLRQDKIA--TPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] Length = 230 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 68/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED ++ +E G+ + +G +AL L ++ +PDV+++D L +SG+E Sbjct: 8 HVLIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPNLSGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+K + +++ +I ++A + + D+ R + G + Y+ KP S+S M ++ + Sbjct: 68 VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRR 126 >gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1603 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 +++V+D +N ++ + + Y NG +AL+ D++++D+ + +SG Sbjct: 1192 HILVVDDEPINQQVLKSHLSALKYDITSALNGEDALKALSNGKHFDLVLLDVMMPRMSGY 1251 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +QI++ E+PVI +TA D G YI+KP + F+ +K ++ Sbjct: 1252 EVCEQIRKKFLPSELPVIMITAKNQVQDLVHGLNTGANDYITKPFTKDEFLARVKTHL 1309 >gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] Length = 232 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + ++ SGY +G+EAL PD +IMD+ + + Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE T+ ++ + ++P++ +TA D G + Y+ KP +L + ++ Sbjct: 61 GLEATRMLRSNGN--DVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272] gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273] Length = 218 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ +V+D+E L R + GY +G E L+L Q PD++I+D+ + ++ Sbjct: 1 MRQRIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++E +PV+ +TA D + G + Y+ KP +L + ++ + Sbjct: 61 GWEVCRRVRE--AGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 224 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IV+D + ++ E GY + +GM+A+EL + DVIIMDI + + G Sbjct: 1 MKRLLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IK+ + IPVI ++A + D+ + G + Y+ KP S M +K I Sbjct: 61 FSACKEIKK---YKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122] gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781] gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719] gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635] gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299] gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115] gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300] gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224] gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948] gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937] gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30] gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3] gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796] gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122] gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781] gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719] gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635] gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299] gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115] gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300] gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224] gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948] gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937] gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3] gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30] gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus TW20] gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796] gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11] gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46] gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus T0131] gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21172] gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21193] Length = 235 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 3 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 63 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)] Length = 248 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ +G + +L ++ ++++D+ L G+ Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIS 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+++ED+ +IP+I +TA D + G + Y+ KP + + IK + Sbjct: 75 ICKRLREDN--SDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 131 >gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 232 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D++ L R +E GY + + +G EA+ KPD++++D+ L + G + Sbjct: 5 KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLPGLDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S IP++ +TA + D+ + G + YI KP + IK + Sbjct: 65 VCREIRKKS---NIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRR 120 >gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] Length = 238 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++DI + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKGIREK---KATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122 >gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1] gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1] gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] Length = 238 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 229 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVED + +L ++ Y +G AL+ R+ D++I+D+ L I Sbjct: 1 MSKKILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLMLPGIQ 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K I+ +S +Q+ +I VTA + + D+ + G + YI+KP S + +K + Sbjct: 61 GLEICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E GY+ + +G AL LA +I++D+ L I G+E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLPGIDGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PVI +TA + + + + G + Y+ KP S + +K + + Sbjct: 67 VCSRLRQ---VKATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRS 123 >gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED +L + GY +G E + A ++ D+II+DI L ++ Sbjct: 1 MSQKILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++ + + PVI +TA + + + K G + YI+KP ++ + + + Sbjct: 61 GFEVLSKLRQ--KGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435] gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435] Length = 233 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009] gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1] gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator receiver domain [Rhodopseudomonas palustris CGA009] gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 457 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 69/121 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL D + + + NG++ALE+ ++ + D++++D+ + ++ Sbjct: 1 MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGIQALEICQRAECDIVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKSNPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 84.4 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + L+ + N EAL A D++I+ + L+ GL Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAADGNYDLLIVSLGLENFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A A R + G Y+ +P+ + M Sbjct: 216 LCSQARSLERTRHVPILAI-AEAENNARLLRGLEIGVNDYLLRPVDKNELMA 266 >gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIR---GKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED+ +L ++ G+ +G E L +A+ D+I++D+ L ++S Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+E ++P+I +TA D+ G + Y++KP S + IK + Sbjct: 61 GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E ++L + G++ +G AL LA + D I++DI L ++ Sbjct: 1 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRLRA--KGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03] gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03] Length = 235 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus pseudintermedius ED99] Length = 233 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLPGQD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 239 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K ++ +D+ ++L +E Y L +G +AL + + PD+I++D+ + Sbjct: 1 MPAKKTVILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQLPDLILLDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G + K I+E +P+I +TA D+ + G + Y++KP S+ + ++ Sbjct: 61 RVDGFTVCKHIRE---FSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVR 117 Query: 118 KYIGEA 123 + + Sbjct: 118 AVLRRS 123 >gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803] gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803] Length = 218 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|225387739|ref|ZP_03757503.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme DSM 15981] gi|225046157|gb|EEG56403.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D ++ + GY +G EA+ AR+ +PD I++D+ L +ISG Sbjct: 1 MKKILIVDDERDIVECLDMNLRKKGYATAFAYDGTEAVLTARRERPDCILLDVMLPKISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +K D IPVI +TA + D+ G + YI+KP I+ + Sbjct: 61 IEVCHLLKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVALR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 226 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + +E SG+ N EL +Q PD++I DI + ++ Sbjct: 1 MSAHLLLVDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQTPDLVITDIMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +Q+++D +PV+ +TA M D + G +AY++KP + +K + Sbjct: 61 GYQFLQQLRDDPRYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNIL 120 Query: 121 GE 122 + Sbjct: 121 RQ 122 >gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii 12D] gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family [Ralstonia pickettii 12D] gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] Length = 237 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K+++ + ++IP+I +TA + + D+ G + Y++KP S + IK + Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU121] Length = 241 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + +G EA +LA ++ I++D+ L E+ Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ Q++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVATQLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|198274194|ref|ZP_03206726.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] gi|198272869|gb|EDY97138.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135] Length = 1312 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + R E Y L NG E ++A+ P++II DI + + G+E+ Sbjct: 1057 ILVVEDNRDIREYVRSSFEEM-YEVLTAANGKEGWDIAQSQIPNIIISDIMMPVMDGIEL 1115 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IKED IPVI +TA D+E G +++I+KP S + I + Sbjct: 1116 CRHIKEDMRTSHIPVILLTAKDTLQDKEEGYAAGADSFITKPFSARLLNSRINNIL 1171 >gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora] gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora] Length = 248 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 61/128 (47%), Gaps = 9/128 (7%) Query: 1 MLK------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54 M+ ++IV+D ++ + GY + +G EALE + +PD++++D+ Sbjct: 1 MMAPAPAKETILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDV 60 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + + G + ++++++S ++P++ +TA D + G + Y+ KP S Sbjct: 61 MMPRLDGYGVCQELRKES---DVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEA 117 Query: 115 TIKKYIGE 122 I+ + Sbjct: 118 RIRCVLRR 125 >gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Hoeflea phototrophica DFL-43] gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Hoeflea phototrophica DFL-43] Length = 457 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L +GM AL + Q + D+I++DI + I Sbjct: 1 MTARILVVDDIPANVKLLEARLMAEYFEVLTAADGMTALSICDQTQVDLILLDIMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R K G + +++KP++ M +K + Sbjct: 61 GFEVCERLKRNPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMTRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VE+ + + AL A + ++II+ L++ L + Sbjct: 158 VLLVENRANAQDRMGRALNGV-AEITVIGDPQAALFEAAEKPYELIIVSSALEDYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + IPV+ V + R + G Y+ +P+ + + I Sbjct: 217 CSQLRSLERTRFIPVLVVAEQGEENLVIRALELGVNDYLVRPLDPNELVARSVTQIRR 274 >gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] Length = 226 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+I ED+ L + D+ E GY + NG EAL+L KPD I +DI + EI+G + Sbjct: 2 KVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEKPDFICLDIMMPEINGYD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ +IPVI ++A + + D+ + + G + YI+KP + + ++ Sbjct: 62 VCREIRKVD--SDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVTRR 118 >gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] Length = 239 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16] Length = 237 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ + PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 230 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED + L R E G+ L NG +AL++ D++++D+ L GLE Sbjct: 5 TVLLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLMLPGKDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +PVI +TA + D + G + Y+ KP S + K + Sbjct: 65 VCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRR 123 >gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] Length = 237 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + +I Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ + IP++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] Length = 235 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E +KL + G+ NG +AL LA D I++DI L ++ Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|330447872|ref|ZP_08311520.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492063|dbj|GAA06017.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 243 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V++V+D++ +L + + +G+ G E PD+I++DI + G Sbjct: 4 SKQVLVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAAGYPDLILLDIMMPGDDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ S ++P+I +TA + + D+ + G + YI+KP S + IK + Sbjct: 64 FTLCQHIRKSS---DVPIIMLTAVSDEMDQIIGLEIGADDYIAKPFSPRQLLARIKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|325299779|ref|YP_004259696.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319332|gb|ADY37223.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1437 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE K ++ Y L+ NG L++A + PD+II D+ + E+ G+E Sbjct: 1175 TILLVEDNEELRKFTGRVLRHE-YRVLEAENGRAGLDMALKEIPDIIISDVMMPEMDGIE 1233 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + IK + + IPV+ ++A A D + + G + YI+KP S + + IK + + Sbjct: 1234 LLDIIKHNPSVCHIPVVVLSAKASLEDRIKGLEYGADGYITKPFSSAYLLARIKSLMRQ 1292 >gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 230 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I +DN +K+ + IE G+ + +G EAL + P +I++DI + + Sbjct: 1 MDKNILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKFNHYNPQLILLDIMMPLMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+E S P+I +TA + D+ G + YI KP S + IK + Sbjct: 61 GIEVCNKIREKS---NTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 221 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ ++ + GY ++ +G+EAL Q ++++D+ L +SG Sbjct: 1 MARVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKIPQAS--LVVLDLMLPRLSG 58 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ D E+PV+ +TA + + R G + Y++KP S + ++ + Sbjct: 59 WEVARELRRD--YPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D + ++L ++ GY NG EA+ A++ PD+II+D+ + ++ G+ Sbjct: 6 QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++ E + ++ +TA + + E G + YI+KPI M I + Sbjct: 66 EACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRR 125 >gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 227 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED+E ++L ++++G+ A R+G E L AR++ P +I+D+ L + Sbjct: 1 MSKDSILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLMLPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K++K D + P+I +TA + D + G + Y+ KP S + ++ Sbjct: 61 DGFEVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSV 120 Query: 120 IGE 122 + Sbjct: 121 LKR 123 >gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603] gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + + AL+L + + D+II+DI + + Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPNMD 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y++KP + + +K + Sbjct: 66 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family [Gluconacetobacter diazotrophicus PAl 5] gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 243 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+E + + R +E GY +G +AL +PD++++D L +SGL++ Sbjct: 20 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 79 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++++ + +P+I +TA A + D R G + Y++KP S+ I+ + A Sbjct: 80 CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 138 >gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 246 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++IV+D++ ++ + +E++G+ +G E+ + ++ PD++++DI L + G+ Sbjct: 24 AKILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSMDGI 83 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K I+++ E PVI +TA D+ + G + Y+ KP + +K + Sbjct: 84 DVLKWIRKEHET---PVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRR 140 >gi|313620820|gb|EFR92044.1| transcriptional regulatory protein WalR [Listeria innocua FSL S4-378] Length = 199 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + + G+ +G EALEL + +PD+I++DI L G+ Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|229525275|ref|ZP_04414680.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae bv. albensis VL426] gi|229338856|gb|EEO03873.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio cholerae bv. albensis VL426] Length = 619 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 215 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAMKREKPELVLLDIMMPGMSGYQVC 274 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 275 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 329 >gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU144] gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU045] gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU028] Length = 241 Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + R+G EA ELA ++ I++D+ L E+ Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99] gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99] Length = 228 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E + + +EAL+L + + D+II+DI + + Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB [Psychrobacter sp. 1501(2011)] Length = 232 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGL 62 +++VED ++ +E SG+ LQ + +A H+P +I++D L SG+ Sbjct: 5 TILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDHRPAMILLDWMLPGNQSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++K+D L EIP+I +TA + ++ + G + YI+KP S + IK + Sbjct: 65 DLCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124 Query: 123 A 123 + Sbjct: 125 S 125 >gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] Length = 230 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +++ + GY NG+E + A++ +P +II+D+ + E+ G+E Sbjct: 7 KILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVMMPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ L+ V +TA + G + YI+KPI + + +K + Sbjct: 67 ACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 >gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] Length = 227 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED + +++ GY ++ AL + PD+I++D S Sbjct: 1 MASRILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +K+D+ L+ IPV+ +TA + D+ R + G + Y++KP S M +K + Sbjct: 61 GIKLLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 231 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +D ++ SG+ N +E E + + PD++I D+ + ++ Sbjct: 1 MSAQLLLVDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNTPDLVISDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + KQ++ED Q +PV+ +TA M GD + G +AY+ KP + ++ + Sbjct: 61 GYQFLKQLREDPRFQALPVVFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLL 120 Query: 121 GE 122 Sbjct: 121 AR 122 >gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3] gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3] gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 218 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 458 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L +G++AL + + D++++DI + + Sbjct: 2 MTARILVVDDIPANVKLLEARLLAEYFEVLTAEDGLKALAICDSTQVDLVLLDIMMPGMD 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +++K D+ IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 62 GFDVCERLKSDARTSHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 121 Query: 121 G 121 Sbjct: 122 R 122 Score = 80.6 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+ + + ++ T + AL + +++I++ ++ L Sbjct: 158 HILLVDGRANSQERIVRALKPI-AQVTATSDPQAALFEVAEKPFELVIVNSNFEDYDPLR 216 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +PV+ VT R G YI +P+ + + I Sbjct: 217 LCSQLRSLERTRFLPVLLVTEQGADEMIVRALDLGVNDYIVRPLDPNELVARSLTQIRR 275 >gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] Length = 235 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D +L +K R +E G +G EA+ELA++ + D++++D+ L + G Sbjct: 1 MARVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLPKYDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E ++P+I +TA D+ + G + YISKP ++ IK I Sbjct: 61 YEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|87303913|ref|ZP_01086579.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87281609|gb|EAQ73617.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 248 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALEL PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 240 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D++ +L ++ + +G+ L +G+E + P++II+DI + G Sbjct: 5 KPILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALSTPELIILDIMMPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+ S+ +P+I +TA + + D + G + YI+KP S M IK + Sbjct: 65 SLCQQIRRKSQ---VPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRR 121 Query: 123 A 123 A Sbjct: 122 A 122 >gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 223 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+V++V+D+ L++K+ + GY +G+E L L Q +PDV++ D+ + E+ G Sbjct: 1 MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E +Q+++ + +P I +++ + D + + G + YI KP + I+ I Sbjct: 61 FEFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADDYIIKPFEPLELVAKIEAQIE 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] Length = 234 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + + + GY +G EA++ + PD++I+D+ L + Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ +L +I VTA A + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus iners AB-1] gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] Length = 234 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + + + GY +G EA++ + PD++I+D+ L + Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ +L +I VTA A + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] Length = 218 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42] gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 457 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + +G EAL + +++ D+I++DI + I Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERNQVDLILLDIMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + +++ + + AL A ++ D++I++ + L + Sbjct: 158 VLLVDGRANSQERIVKALKSV-ADVVALSDPQAALFEAAENTFDLVIVNANFDDYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +P++ +T R G Y+ +P+ + + I Sbjct: 217 CSQLRSLERTRFLPILIITEQGADDMVVRALDLGVNDYLIRPVDPNELVARSLTQIRR 274 >gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169] gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1] gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1] gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1] gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1] gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7] gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8] gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1] gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72] gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E] Length = 244 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L + +E GY+ +G + +L + +I++D+ L + Sbjct: 8 MTHRILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDED 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ I K+++ ++ IP+I +TA D + G + Y+ KP + + IK + Sbjct: 68 GIAICKRLRAEN--SSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] Length = 229 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ + + A+ PD++++D + S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K DS +++PV+ +TA + D + + G + Y+ KP S + +K + Sbjct: 61 GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++I +D+ +L ++ GY ++ +G +A+E+ + D++++DI + ++ Sbjct: 1 MKPITILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ Q +P+I ++A D+ + G + Y++KP + + + Sbjct: 61 DGYEVTRQIRTK---QNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 67/121 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D + ++ + +E GY +G+E +E+A++ PD+I+MD+ + + G+ Sbjct: 7 QTILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDGI 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I++D +L+ + +T+ A + + G + YI+KPI + + ++ + Sbjct: 67 EACQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLRR 126 Query: 123 A 123 A Sbjct: 127 A 127 >gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550] gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550] gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 218 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 218 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|219847541|ref|YP_002461974.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] gi|219541800|gb|ACL23538.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] Length = 313 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I +D+ L D+++ +G+ L +G L++A++ PD+I++D+ L + G E Sbjct: 9 TVLIADDDPNLRFLLSDMLQRAGFDVLVAEDGSALLQIAQEQLPDIILVDLMLPGVDGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ D+ +P+I VTA D G + Y++KP + + + I+ + Sbjct: 69 AIRQLRNDTRTAHLPIIIVTARTNPADVVIGFDTGADDYVTKPFNEAELIARIRSLLRR 127 >gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + + + GY +G++AL A + PD+I++DIQ+ + GL Sbjct: 6 RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ +P++ +TA GD G + Y+ KP L I+ + + Sbjct: 66 AARRLRAAGST--VPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 123 >gi|163785606|ref|ZP_02180161.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1] gi|159879126|gb|EDP73075.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1] Length = 203 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 63/118 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + +VED+E +L ++ G +G +AL KPD+I++DI L +I GLE+ Sbjct: 4 IYVVEDDEDINELLVYNLQKEGNKVKSFYSGKDALSSLENEKPDLILLDIMLPDIDGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K +K D +EIP+I +TA + + D+ + G + YI+KP S + IK + Sbjct: 64 CKTVKSDPVKREIPIIMLTAKSTEIDKIVGLELGADDYITKPFSFRELLARIKAVLRR 121 >gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio alginolyticus 12G01] Length = 1128 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y+SKP + I+ ++ Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839 >gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] Length = 239 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G AL+ A +PD+II+D+ L ++ Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571] gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571] Length = 238 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 248 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALEL PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 227 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED++ ++L + ++ Y+ NG+E ++ ++ K D+II+DI++ + G Sbjct: 4 QRILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPNLDGH 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I+ IP+I +TA + + D+ + + GC+ YI+KP S ++ ++ ++ + Sbjct: 64 TTCKMIR---NTSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus ATCC 53653] gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++ ED+ + GY +G+EAL + PDVI++D+ + + Sbjct: 1 MTNTVLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + ++ + + P++ +TA D G + Y++KP + ++ + Sbjct: 61 GIQVCRVLRAEGD--RTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|170720670|ref|YP_001748358.1| histidine kinase [Pseudomonas putida W619] gi|169758673|gb|ACA71989.1| histidine kinase [Pseudomonas putida W619] Length = 785 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G + G+EALE Q D+++MD + + G Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCVVQVATQGVEALERLEQEDFDLVLMDCNMPVMDGY 723 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I++ E+P++A+TA AM + ER R G Y++KP + I ++ Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHWV 781 >gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 266 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+ +L + + +G+ G + E D+I++DI + G Sbjct: 33 KRLLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIMMPGDDGF 92 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ S IP+I +TA A + D + G + Y+ KP + + IK + Sbjct: 93 TLCKEVRTKS---NIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRR 149 >gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453] gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453] Length = 231 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L ++ GY L+ +G EA++ A+ H D+ I+DI + ++ Sbjct: 1 MKRITILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIMMPKL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +QI+E +P+I ++A D+ G + Y++KP + + + + Sbjct: 61 DGYEVIRQIREQ---HHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAH 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 457 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + +G EAL + +++ D+I++DI + I Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERNQVDLILLDIMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 83.6 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ L + AL A +H D++I++ + L + Sbjct: 158 VLLVDGRANSQERIVRALKPV-ADVLALSDPQAALFEAAEHAFDLVIVNANFDDYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +P++ +T R G YI +P+ + + I Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIVRPVDPNELVARSLTQIRR 274 >gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 228 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +ET+GY +G A E P+++++D+ L I G+E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS +PVI +TA D+ + G + Y+ KP + +K + Sbjct: 67 VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122 >gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 259 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALEL PD++++D+ + ++ G Sbjct: 21 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYG 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 81 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 136 >gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 460 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N+KL ++ Y + +G EA++L + +PD+I++DI + +++ Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K++K D IP+I VTA D + G + +++KPI+ + IK Sbjct: 61 GFEVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 84.0 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 53/118 (44%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++++ + ++++ + MEAL++ ++ D+II D+Q + GL + Sbjct: 159 VLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + E + P++ ++ K + + G Y++ P+ + + + Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 >gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 262 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ L +E SG+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L +K + + Sbjct: 65 CQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRS 123 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ + R + +GY +G EALE + +PD+ I+D+ + ++ GL+ Sbjct: 2 KILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKLDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + ++PV+ +TA + G + Y+ KP +L + ++ + + Sbjct: 62 VCRRLRSEGD--DLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRS 119 >gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] Length = 233 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 236 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D + + + +E GY +G EAL + +PD+I++DI L Sbjct: 1 MDRTILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 231 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 ++K +++VED+ +L + +G+ +G EAL+L + D +++D+ L Sbjct: 1 MRKPSILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + ++ ++ +P+I +TA + + D + G + Y++KP S + + ++ Sbjct: 61 DGNEVCRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAA 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 231 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED E L R +E G++ G +A L + PD++++D L +SG+E+ Sbjct: 3 VLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLPGLSGIEL 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ E + +PVI +TA +GD R G + YI KP S+ + I+ + A Sbjct: 63 CRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRRA 121 >gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 225 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I++D E+ +K + +E G+ +G E L+ R D++I+DI L ++ G Sbjct: 1 MEKLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ IP+I +TA D+ + G + Y++KP + I+ + Sbjct: 61 FSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D +L + ++ +GYI + +G AL D++I+D+ + + G Sbjct: 1 MAKILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ PVI +TA + D+ + G + Y+ KP S + ++ + Sbjct: 61 MTCLREMRA--RHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLN 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 227 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D ++ + +E G+ T NG EAL R+ PD+II+D+ L EIS Sbjct: 1 MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+++S +P+I +TA D+ + G + Y++KP + K + Sbjct: 61 GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)] gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 256 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ ++ ++ +GY + +G EAL A H+PD++++D+ L + GLE Sbjct: 30 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 89 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 90 VCRRLRGQGP---VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 143 >gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 249 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + ++ + G+ N +A ++ +Q+ P+++I DI + ++ Sbjct: 22 MSAKLLLVDDEPGVREAVKEYLAEFGFTVQVASNANDAWQMLQQNTPELVISDIMMPKVD 81 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +Q+++D + +PV+ +TA M D + + GC+AY+ KP + ++ + Sbjct: 82 GYQFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKPFDPDELVAIVQNLL 141 Query: 121 -GEA 123 A Sbjct: 142 ERRA 145 >gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIR---GKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] Length = 231 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G AL + +PD++I+D+ L + G Sbjct: 5 QKILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ ++ +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREVRRNN---NLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1336 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+DNE R +E Y NG EAL ++ +PD++I D+ + + G E+ Sbjct: 1089 LVVDDNEDFRLFMRHSLELQ-YRVEVASNGQEALSKIQELQPDLVISDVMMPGMDGNELC 1147 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK D IPVI +TA + + + G + Y++KP ++++ + I+K I Sbjct: 1148 RLIKGDKRTAHIPVILLTARQAVESKVKGLETGADDYVTKPFNMTVLVLRIRKLI 1202 >gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 249 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++VED + R +E GY +G+ LE AR +PD+I++DI L + GL Sbjct: 10 AHVLVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIMLPGLDGL 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I ++++ + +P++ +TA D G + Y+ KP S+ + ++ + Sbjct: 70 QICERLRR-EDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IV+D E L ++ G+ LQ NG +AL++ +++ +++++DI + + Sbjct: 1 MNKTILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G K+I++ S+ +PVI +TA A D+ + G + Y++KP S + + +K + Sbjct: 61 GWTTCKEIRKISQ---VPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K++ +I +D L +E GY ++ +G EA+ + D++++DI + ++ Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275] gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275] Length = 232 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 75/119 (63%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+I++D ++L R +ETSGY + + +G + A++ KPD+I++D L ISG+E Sbjct: 7 KVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I++D++L++IPVI +TA M+ D+ + G + YI+KP S+ + I + Sbjct: 67 VLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMRR 125 >gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter diazotrophicus PAl 5] gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+E + + R +E GY +G +AL +PD++++D L +SGL++ Sbjct: 16 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++++ + +P+I +TA A + D R G + Y++KP S+ I+ + A Sbjct: 76 CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 134 >gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 256 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEI 59 M ++IVED + + ++ GY + +G LE A + PD++++D+ L +I Sbjct: 1 MPTTILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG E+ +Q++ + +PV+ +TA + D + G + Y++KP S+ M ++ Sbjct: 61 SGTEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAI 120 Query: 120 IGEA 123 + A Sbjct: 121 LRRA 124 >gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 252 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALE + D++++D+ + ++ G Sbjct: 13 TILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVMMPKLDGYG 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 73 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 128 >gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 235 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED KL +E S + L+ +G AL+LA P ++++D+ L ++ G E Sbjct: 5 KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++E ++P+I ++A D+ + G + YI KP + I+ + Sbjct: 65 ICARLRE--RHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRR 121 >gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 218 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain, putative [Rhodospirillum centenum SW] gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain, putative [Rhodospirillum centenum SW] Length = 482 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + G EAL+ R PD++++D+ + + Sbjct: 1 MSARVLVVDDVVPNVKLLAAKLTREYFDVITAYGGPEALDKIRSQSPDIVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ D + IPV+ VTA + D R + G + +++KP++ ++ + Sbjct: 61 GFEVCERIRSDPSVMHIPVVMVTALSDVADRVRGLEAGADDFLTKPVNDVALFARVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ ++M R+ + ++ N ALELA +++I+ + L GL Sbjct: 157 RILVVEDSSIDMDKIRETLARDRDGVVEAENCAAALELALSQDFELVIISLTLMREDGLR 216 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ +++P++ + A D + + G Y+ KPI + M + + Sbjct: 217 LCSQLRSHERTRQVPILLL-ADETDMDRVAKGLELGANDYVIKPIDRNELMARTRTQVRR 275 >gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] Length = 236 Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D ++ R ++ +G+ + + EA + KPD++++D L SG+ Sbjct: 4 KTILIVDDEAPIREMIRMSLDMAGFNCREAADTREAYRVIADSKPDLVLLDWMLPGGSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++++ ++PVI +TA + ++ + G + YI+KP + + IK + Sbjct: 64 ELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLRR 123 >gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 225 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++I +D KL D ++ G+ L+ +NG EAL++ + D+II+DI + E+ G Sbjct: 5 KILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPELDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI++ S +PVI +TA + + DE G + YI+KP S I + ++ + Sbjct: 65 SVCRQIRKSSR---VPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+ +L + Y + +G EAL + + KP+++++D+ L + G Sbjct: 5 QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ ++PVI ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCRELRS---GSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|87125186|ref|ZP_01081032.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86166955|gb|EAQ68216.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 175 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L +E +G+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDRDMRELVGGHLEHNGFDVQRAEDGIKGQALALQYSPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L IK + + Sbjct: 65 CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 >gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 736 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 72/121 (59%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +LN + + G+ NG EAL+L + DV++MD+Q+ E+ GLE Sbjct: 610 RILLAEDEQLNREFVTFFLLGEGHTVTTATNGCEALDLLERQDFDVVLMDVQMPELDGLE 669 Query: 64 ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ E + +P+IA+TA+AMK D ER+ G + Y+SKP+ + ++ + + Sbjct: 670 ATRRIRSLEKPDKAHVPIIALTAYAMKEDRERVMAAGMDDYLSKPLDMDELRRSLARILA 729 Query: 122 E 122 E Sbjct: 730 E 730 >gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 242 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA+E ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED+ +K + + Y + +G +ALE+AR+ KPD+I++DI L ++S Sbjct: 1 MQNKVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLPKLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + ++++ P++ +TA A + D+ + G + Y++KP S+ + ++ + Sbjct: 61 GFEVCRILRKEMNS---PILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAML 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074] gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074] gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D R + GY +G++ALE A ++PD+I++DIQ+ + GL Sbjct: 13 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + +P++ +TA GD G + Y+ KP L ++ + Sbjct: 73 TAARRVRAAQDT--VPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 130 Query: 123 A 123 + Sbjct: 131 S 131 >gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51] gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 225 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+MIV+D+ +L L++ G+ + R+G EALE + P + ++D+ + + G Sbjct: 1 MSKIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ +++PV+ +TA K + + + G + Y++KP + +K + Sbjct: 61 YELCRQLRQY--YKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|186681683|ref|YP_001864879.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464135|gb|ACC79936.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 475 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N+++ + + +G+ L NG A+ A PD+I++D+ + I G Sbjct: 11 ILIVDDNPNNLEVLSETLMDTGWEILIAVNGEGAIAQAEYACPDIILLDVMMPGIDGFTA 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + +IP+I +TA + D+ + G YI+KP + IK ++ Sbjct: 71 CQRLKSNPVTCDIPIIFMTALSETVDKVKGLSLGAVDYITKPFEHEEVLARIKTHL 126 >gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635] gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635] Length = 244 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + NG EA +LA ++ I++D+ L E+ Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 64 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 230 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D + ++L ++ GY NG EA+ A++ PD+II+D+ + ++ G+ Sbjct: 6 QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++ E + ++ +TA + + E G + YI+KPI M I + Sbjct: 66 EACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRR 125 >gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 846 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 66/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D +N ++ +++E +G+ NGMEALE ++H D++IMDIQ+ + GL Sbjct: 729 VLLVDDEPINREVAAEILEDAGFDVTLASNGMEALERLQRHPVDLVIMDIQMPGMDGLTT 788 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I++ + +P+IA+TA A DE G A+I KPI + + Sbjct: 789 TRRIRQMPDRAHLPIIAMTANAFAEDETECLNAGMNAFIPKPIDPERLYRIVLSCLDR 846 >gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + L + SG+ L G +AL R+ PD++++D+ L ++SG Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QIK D + +PV+ +TA + D + G + Y++KP S+ + +K + Sbjct: 61 TEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 234 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D + + L +E +G+ L +G EA+E +P II+D+ L ++ Sbjct: 1 MCKKVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] Length = 240 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E +L + +E + + ++G EAL++A I++D+ L E+ G Sbjct: 1 MTKILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 IEVANRLRE---YKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 234 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 71/119 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E ++L + + +GY L + NG++AL++A+ P +I++D+ L + G + Sbjct: 5 KILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLMLPGLDGFD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++K+D E Q I +I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 65 VCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 >gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1210 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N ++ ++E GY NG +AL A + D+++MD Q+ E+ GL Sbjct: 934 RILLAEDSPVNREVAVGMLEQLGYEVEVAENGRQALAAAERDHFDIVLMDCQMPEMDGLT 993 Query: 64 ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ S + +P+IA+TA AM+GD E G + Y+SKP + ++K++ Sbjct: 994 ATGEIRRRETASGRRRLPIIALTAHAMQGDREHCLTAGMDDYLSKPFTQMQLQGIVRKWL 1053 >gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 238 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ L ++ R +E +G+ +G EA LA +H+PD++++D L + GL + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++ ++ PV+ +TA + R GG + Y+ KP S + ++ + A Sbjct: 74 CERWRKGEYFA--PVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRA 130 >gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 240 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQE 58 M K+++++ED+ +L D + + Y G E L+L ++ D++++D+ L + Sbjct: 1 MSKQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPD 60 Query: 59 ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+++ ++I+ +++ ++P+I +TA D + G + YI+KP + I Sbjct: 61 MDGMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120 Query: 117 KKYIGE 122 + I Sbjct: 121 RAVIRR 126 >gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] Length = 237 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ + PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|22299208|ref|NP_682455.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22295390|dbj|BAC09217.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 288 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D N+++ L++ GY +G AL PDVI++DI + ++ G E Sbjct: 12 RILIVDDTPENVEVLTTLLQLEGYDVRGAISGQMALMGIEAEPPDVILLDIMMPDMDGYE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K++ + + IP+I ++A D+ + + G YI+KP + + +K + Sbjct: 72 LCQTLKQNPKTKHIPIIFISALDDVFDKVKAFEIGGADYITKPFQQAEVLARVKNQL 128 >gi|17228424|ref|NP_484972.1| two-component system, regulatory protein [Nostoc sp. PCC 7120] gi|75906731|ref|YP_321027.1| response regulator receiver domain-containing protein [Anabaena variabilis ATCC 29413] gi|17130275|dbj|BAB72886.1| two-component system, regulatory protein [Nostoc sp. PCC 7120] gi|75700456|gb|ABA20132.1| Response regulator receiver domain protein (CheY) [Anabaena variabilis ATCC 29413] Length = 121 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 71/120 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED+ ++ DL++ SG +G+EALE ++ PD++++DI + +++G Sbjct: 1 MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q +PV+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120 >gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 237 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+K +++I+D+ + +I Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 249 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ ++L +E SGY + +G++ LA Q PD+I++D+ L + Sbjct: 1 MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++ D EIPV+ +TA D+ G + Y++KP + + ++ + Sbjct: 61 GFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 120 Query: 121 GE 122 Sbjct: 121 QR 122 >gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 230 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ +++ R IE +G+ +G+ A+ R+ PD++++DI L E Sbjct: 1 MSARILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I++ S ++P++ +TA + D + G + Y++KP S + IK + Sbjct: 61 GLEVCRDIRKSS---DVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 241 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L ++ + + NG++AL +A + D++++D+ L ++SG Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ D + PVI +TA + D+ + G + YI KP S + I + Sbjct: 61 EQVLKQLRMDRN--DTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|313499963|gb|ADR61329.1| Histidine kinase [Pseudomonas putida BIRD-1] Length = 785 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G G EALEL + + D+++MD + + G Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGY 723 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I++ E+P++A+TA AM + ER R G Y++KP + + ++ Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 781 >gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 233 Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291566271|dbj|BAI88543.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 438 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 67/117 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+ L DL+ GY +G A+E+A+ H+PD++++D+ + +++G E Sbjct: 7 HILLVDDEPANLVLLEDLLMAEGYNTTLAESGSRAIEIAQNHRPDLVLLDVMMPDMNGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++E+ LQ P+I +TA + + + YI+KP ++ + + I+ + Sbjct: 67 VCDRLRENPILQTTPIIFLTALDDEESRLMGLQTMGDDYITKPFNIKLLLAKIQNIL 123 >gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 240 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E +L + +E YI + NG +ALE A ++ DVI++D+ L G+E Sbjct: 8 KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLMLPGRDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 68 VCKGIREK---KATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRA 124 >gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + + ++ GY NG LELA+++ D++I+D L + SGL+ Sbjct: 2 RILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + +++ + PV+ +TA D G + Y+ KP L + ++ + + Sbjct: 62 ICQYLRDQGDT--TPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRS 119 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + L +E +G+ + +G EAL +P +II+D+ L ++ Sbjct: 1 MGRKILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K++++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVDVCKRLRQQQIM--TPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + + ++ G+ NG+ AL L +++ D++++D+ L +SG E Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLMLPGLSGEE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I++ S PVI +TA D + G + YI KP S + IK + Sbjct: 62 ICREIRKISAT---PVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRR 117 >gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system with phor [Ralstonia solanacearum CFBP2957] gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum CFBP2957] Length = 237 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K+++ + ++IP+I +TA + + D+ G + Y++KP S + IK + Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] Length = 265 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED L +E G++ + G EA + PD++I+D L +SGLE Sbjct: 29 RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWMLPGVSGLE 88 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + +PVI +TA + + R G + Y+ KP S+ M ++ + A Sbjct: 89 ICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRRA 148 >gi|26988605|ref|NP_744030.1| histidine kinase [Pseudomonas putida KT2440] gi|24983381|gb|AAN67494.1|AE016376_4 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 785 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G G EALEL + + D+++MD + + G Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGY 723 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I++ E+P++A+TA AM + ER R G Y++KP + + ++ Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 781 >gi|330808379|ref|YP_004352841.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376487|gb|AEA67837.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 773 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + ++ G +G EAL+ Q D+++MD + + G E Sbjct: 651 RVLLVEDNPVNQLVAKGMLVKLGCEVTVAAHGGEALDQLEQRVFDLVLMDCNMPVMDGYE 710 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++QI++ ++P++A+TA AM + ER R G Y+SKP + +++ Sbjct: 711 ASRQIRQSGRWSDLPIVALTANAMPEERERCRAAGMNDYLSKPFRREELAAVLDQWV 767 >gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 237 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++ +D ++ + G++ + +G EAL++ + +PD+II+D+ + +++G Sbjct: 6 QKILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVMMPKLNGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + ++++S ++P+I +TA + D + G + Y+ KP S I+ + Sbjct: 66 QVCQSLRQES---DVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRR 122 >gi|153216364|ref|ZP_01950429.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124114317|gb|EAY33137.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 773 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 369 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 428 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 429 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 483 >gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus helveticus H10] Length = 238 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|253570096|ref|ZP_04847505.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840477|gb|EES68559.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1450 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE ++++ + Y + NG E + A + PD+II D+ + + GLE Sbjct: 1192 TILVVEDNEELKTFLKNIL-SENYTVITASNGKEGWQHAVDNIPDLIISDVMMPVMDGLE 1250 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QIKE++ + IP+I ++A A D + G + YI+KP S + I + + Sbjct: 1251 MIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309 >gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces roseosporus NRRL 11379] Length = 246 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + R + GY +G +AL +A + PD+I++DIQ+ + GL Sbjct: 9 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 69 TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] Length = 229 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D +L +K R +E G +G EAL+L+R++ D+I++D+ L + Sbjct: 1 MSKRVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLPKYD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +QI+E ++PV+ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFQVCQQIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct] Length = 228 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++D+ L I G Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120 >gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551] gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551] gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 237 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +AL L PD++++D L S Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ K+++ + ++IP+I +TA + + D+ G + Y++KP S + IK + Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 228 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++V+D + +E+ GY +G+EAL + + PD++I D+ + + G Sbjct: 1 MQKILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNPPDLVISDVMMPHMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++++ Q +P I ++ + G + Y+ KP + +K + Sbjct: 61 FEFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGGDDYLVKPFQPKEILAKVKGQLE 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 233 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++++V+D E +L R +E +G+ + +G EAL A +II+D+ L + Sbjct: 1 MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ QI++ S +P++ +TA + + + G + Y+ KP S + +K Sbjct: 61 DGRDVCAQIRQHS---NVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAM 117 Query: 120 IGE 122 + Sbjct: 118 LKR 120 >gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 902 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED+++N ++ +++ NG EA++L +++ D+I+MD+Q+ E+ G+E Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726 Query: 65 TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I++ E + IP+IAVTAFA + D E+I + G + YISKP S I + + Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY ++G+EAL+ ++PD +I+D+ + + Sbjct: 1 MAVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|297580749|ref|ZP_06942675.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297535165|gb|EFH74000.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1177 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 61/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G + LE ++ KP+++++DI + +SG ++ Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 833 VKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 887 >gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 248 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALE ++ +PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125 >gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14] gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase [Nitrobacter hamburgensis X14] Length = 457 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + NG +ALE+ + K D++++DI + ++ Sbjct: 1 MSARVLVVDDIPANVKLLEARLSAEYFDVMTASNGAQALEICARAKCDIVLLDIMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ + + EAL A ++ D++I+ + L+ GL Sbjct: 157 RILLVDDRASSYERLASVLSAE-HTVDVETDPSEALFHAAENSYDLLIVSLGLENFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A A R + G Y+ +P+ + + Sbjct: 216 LCSQARSLERTRHVPILAI-ADANSNTRLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103] gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103] Length = 267 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++D+ + + +G Sbjct: 36 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKNG 94 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 95 IDTLKELRQQYQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 151 Query: 122 EA 123 + Sbjct: 152 RS 153 >gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++++V+D E +L R +E +G+ + +G EAL A +II+D+ L + Sbjct: 1 MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ QI++ S +P++ +TA + + + G + Y+ KP S + +K Sbjct: 61 DGRDVCAQIRQHS---NVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAM 117 Query: 120 IGE 122 + Sbjct: 118 LKR 120 >gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 225 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED R + GY +G++ LE+A D++++D+ L I G Sbjct: 1 MTRILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLMLPVIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ +P+I +TA D + G + Y+ KP + + I+ + Sbjct: 61 FEVARRIRA---ASNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|17231412|ref|NP_487960.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133054|dbj|BAB75619.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 414 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D+ + L+ GY ++ +G A++L Q +PD+I++D+ + E+ G Sbjct: 93 SPKVLVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDG 152 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + +K+D + IPVI +TA + R + G + ++SKP + +K + Sbjct: 153 FEVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLV 211 >gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi] gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi] Length = 458 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N+KL ++ Y + +G EA++L + +PD+I++DI + +++ Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K++K D IP+I VTA D + G + +++KPI+ + IK Sbjct: 61 GFQVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 51/118 (43%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+++ + ++++ + +EAL++ + D+II D+Q + GL + Sbjct: 159 ILVVDEDVFQAEQIYNVLKQRFRSIKILSDPIEALKVGIKDNYDLIISDMQFSKTDGLRL 218 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + E + P++ ++ K + + G Y++ P+ + + + Sbjct: 219 CSGFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 >gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti AK83] gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti AK83] Length = 455 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L +G AL + D++++DI + + Sbjct: 1 MTARILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPVDLVLLDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K +S IPV+ +TA D R K G + +++KP++ M +K + Sbjct: 61 GFEVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ + AL A + D+II++ + L + Sbjct: 156 VLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFKAAESSFDLIIVNANFDDYDPLRL 214 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + IP++ VT R + G YI +P+ + + I Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272 >gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] Length = 238 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2] gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 457 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + NG +ALE+ + + D++++D+ + ++ Sbjct: 1 MSARILVVDDIPANVKLLEARLSAEYFDVVTAANGAQALEICDRAECDIVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + L+ + N EAL A + D++I+ + L+ GL Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEPNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A A R + G Y+ +P+ + + Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 251 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ +L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 1 MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 230 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED+ ++L + Y + +G L LA ++ D+I++D+ L + G Sbjct: 1 MKQILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDYDLILLDLTLPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K+++ + PVI +TA + + D + G + Y++KP S+ + IK + Sbjct: 61 IEVCKKLR---IKKNTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|300868441|ref|ZP_07113062.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333575|emb|CBN58250.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 382 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D N+ L + ++E GY NG AL Q PD++++D+ + + G E Sbjct: 14 RILVVDDAPDNVLLVQTILEDEGYEISSAENGFSALAQIEQSPPDLVLLDVMMPGMDGYE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+++ +L IP++ +TA + G + +I KP+ + + ++ + Sbjct: 74 VTQRIRQNEKLPFIPILLITAHDQPS-VVQGLDTGADDFIRKPVEMDELLARVRSLLR 130 >gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 246 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D + + +E S +I N EL +Q+ PD++I DI + E+ G Sbjct: 19 SPRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPEVDG 78 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120 + +Q++ D + + +PV+ +TA MKGD + + GC+AY+SKP + +K + Sbjct: 79 YQFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138 Query: 121 GEA 123 A Sbjct: 139 RRA 141 >gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676] gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676] Length = 233 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ L +E G + + ++AL+L + + D+II+DI + + Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPNMD 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+ED + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 66 GIEACMKIRED---RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|189468013|ref|ZP_03016798.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM 17393] gi|189436277|gb|EDV05262.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM 17393] Length = 1451 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN ++ + Y ++ NG E LE A++H PD+II DI + + GL++ Sbjct: 1192 ILIVEDNMELRSFLHTIL-SENYKVIEAINGQEGLERAQEHVPDLIISDIMMPVMDGLDM 1250 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKE+ E+ IP+I ++A + D + G + YI+KP S + IK + Sbjct: 1251 VKNIKENREICHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSATYLKARIKSLL 1306 >gi|145301083|ref|YP_001143924.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853855|gb|ABO92176.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++IV+D++ +L + + +G+ L G E + H PD+II+DI + G Sbjct: 4 SKQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLALHSPDLIILDIMMPGDDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +QI+ DS+ +P+I +TA + + D + G + YI+KP S IK + Sbjct: 64 FTLCQQIRRDSQ---VPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 902 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED+++N ++ +++ NG EA++L +++ D+I+MD+Q+ E+ G+E Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726 Query: 65 TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I++ E + IP+IAVTAFA + D E+I + G + YISKP S I + + Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784 >gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 223 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVED L RD + G+ L+ +G EAL + ++ D+ I+DI + ++ Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+E + P+I +TA + + D+ + G + Y++KP S + + K + Sbjct: 61 GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 460 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N+KL ++ Y + +G EA++L + +PD+I++DI + +++ Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K++K D IP+I VTA D + G + +++KPI+ + IK Sbjct: 61 GFEVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 83.6 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 53/118 (44%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++++ + ++++ + MEAL++ ++ D+II D+Q + GL + Sbjct: 159 VLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + E + P++ ++ K + + G Y++ P+ + + + Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 >gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 229 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ +++S +EIP+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] Length = 229 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ +E G+I +G EAL L + PDVI++D L +SG+E+ Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q K + + IP+I ++A + + D R + G + Y+ KP S+ M ++ ++ Sbjct: 68 CRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRR 125 >gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] Length = 229 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I+ED ++ +E G+ ++ NG E L L + PD+I++D + +SG+E Sbjct: 7 TVLIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K E + IP+I ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 67 VCRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 >gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 237 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED ++ +E Y+ +G A+E +H D++I+D+ L ++SG Sbjct: 6 KKILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLMLPKLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + +P+I +TA D + G + Y+ KP S + ++ Sbjct: 66 RVCRAIR---DTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRR 122 >gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] Length = 250 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VED + +E GY + +G A+E +H+ D+I++D+ L ++SG Sbjct: 17 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + ++P+I +TA D + G + Y+ KP S + ++ Sbjct: 77 RVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRR 133 Query: 123 A 123 A Sbjct: 134 A 134 >gi|71908424|ref|YP_286011.1| PAS [Dechloromonas aromatica RCB] gi|71848045|gb|AAZ47541.1| PAS protein [Dechloromonas aromatica RCB] Length = 1023 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 72/119 (60%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED +N ++ ++++ G + +G +AL++ ++ D+I+MD+Q+ +++G+E Sbjct: 899 RVLLVEDEPINQEVATEMLKEIGLVVDLATDGEQALDMVQRTGYDLILMDLQMPKMNGIE 958 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I++ E+P++A+TA A D +R G +I KP+ + E + K++G Sbjct: 959 ATQAIRQLPAGAEVPIVAMTANAFTEDRQRCLDAGMNDHIGKPVDPELLFEILLKWLGR 1017 >gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021] gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti BL225C] gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Sinorhizobium meliloti 1021] gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium meliloti BL225C] Length = 455 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L +G AL + D++++DI + + Sbjct: 1 MTARILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPVDLVLLDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K +S IPV+ +TA D R K G + +++KP++ M +K + Sbjct: 61 GFEVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ + AL A + D+II++ + L + Sbjct: 156 VLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFEAAESSFDLIIVNANFDDYDPLRL 214 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + IP++ VT R + G YI +P+ + + I Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272 >gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea MMB-1] Length = 2241 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 73/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VEDNELN ++ +E SG + NG +ALE ++ DV++MD+Q+ + G+ Sbjct: 1905 KRVLLVEDNELNSRVVLGYLEESGVMLDMAENGQQALEKVQEVHYDVVLMDLQMPIMDGI 1964 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + + +P++A+TA A D++R + G YI+KP+ + +K+++ Sbjct: 1965 TATRKIRAVFDEKTLPIVAMTAHASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHM 2022 Score = 81.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+D+ + + +++ G +EALE R+ DV++M+ L Sbjct: 1760 RVLVVDDSNIARRAIVYMLKEIGVQCDDVGAPIEALECIREGNGASTNYDVLLMERYLAG 1819 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + L+ ++IK++S + + I V++F+ + + + + KP+ LS + + Sbjct: 1820 VDCLDTIRKIKKESSNKNLTSIIVSSFSDEEKQLLSVDRDIDDVLDKPVDLSSLRQAL 1877 >gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1111 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y+SKP + I+ ++ Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 822 >gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus Peru-466] gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus AN-5034] gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus K5030] Length = 1111 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y+SKP + I+ ++ Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 822 >gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 233 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ + ++ +GY +G AL A +PD++++D+ L ++G Sbjct: 1 MARVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E +PV+ +TA + D + G + Y++KP S ++ + Sbjct: 61 LEVCRRLRE---TGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E L R +E GY G EA R+ PD++++D L +SG Sbjct: 1 MPKVLIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ + + +PVI +TA + + R G + Y+ KP S+ M ++ + Sbjct: 61 IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 242 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA+E ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 248 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY +G EAL++ +PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHNCEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + +L + +E +GY L NG AL D++++D+ L E+ G Sbjct: 1 MAKILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE-IDLVVLDLMLPEVDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +Q++ + +L++IP+I +TA + + + G + Y++KP S + IK Sbjct: 60 MEVCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] Length = 244 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + + + GY +G EA++ + PD++I+D+ L + Sbjct: 11 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ +L +I VTA A + D+ + G + Y++KP S + +K + Sbjct: 71 GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 127 Query: 121 GE 122 Sbjct: 128 RR 129 >gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 241 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + NG EA ELA ++ I++D+ L E+ Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++E +E P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVASKLREH---KETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 228 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D +++ ++ GY NG E ++ A++ KPD+II+D+ + + G+ Sbjct: 6 AKILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +QI++ EL + + +TA G + YI+KPI + + +K + Sbjct: 66 EACEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLLRR 125 >gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170] gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170] Length = 228 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + + GY NG+E + A++ +P +II+D+ + Sbjct: 1 MKKKDIKILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I++ L++ + +TA + + G + YI+KPI + + +K Sbjct: 61 EMDGIEACEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] Length = 244 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + + + GY +G EA++ + PD++I+D+ L + Sbjct: 11 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ +L +I VTA A + D+ + G + Y++KP S + +K + Sbjct: 71 GLEVAREVRQSHDLS---IIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 127 Query: 121 GE 122 Sbjct: 128 RR 129 >gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] Length = 227 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V+++ED ++ ++ GY ++G + L + + PDVI++D L + Sbjct: 1 MTQPHVLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ +Q+K S + IP+I ++A + + D+ R + G + Y+ KP +++ M ++ Sbjct: 61 SGIEVCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQ 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas ingrahamii 37] Length = 1574 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 10/128 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+DNE+N ++ R+ +E +G + NG EA+ + H D ++MD+Q+ EI G Sbjct: 1221 AKILLVDDNEINRQVAREFLENAGLLVTTATNGREAVNSVKSHVFDAVLMDVQMPEIDGY 1280 Query: 63 EITKQIKEDSELQ----------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 E T++I+ + + +P+IA+TA AM+GD+ER G Y++KPI Sbjct: 1281 EATQKIRRWEKTRVDLQPTDGSPVLPIIAMTAHAMEGDKERCLAAGMNDYVTKPIDTRQL 1340 Query: 113 METIKKYI 120 E + ++I Sbjct: 1341 FEALSRWI 1348 Score = 102 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEISG 61 ++V+DN + +K+ ++ + T +G +AL + + D+ I+D Q+ I G Sbjct: 1075 LVVDDNPVTLKVIEKMLIHLKFNVTTTESGEKALSVLENALGNNTVDLAIIDWQMGGIDG 1134 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E K+IKE+ + ++P++ ++ G ++ ++ G ++++ KP++ SI +ETI Sbjct: 1135 IETAKKIKENPSIPKMPMVLMSGSDRDGLLGQKSKQVGFDSFVLKPVNRSILVETILTVF 1194 Query: 121 G 121 G Sbjct: 1195 G 1195 >gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] Length = 232 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-E 58 +K +++VED ++ +E +G+ LQ +A L H+P++I++D L Sbjct: 1 MKNETILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQAHHLVVDHRPNLILLDWMLPNG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+++ +++K+D L EIP+I +TA + ++ + G + YI+KP S + IK Sbjct: 61 LSGIDLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKA 120 Query: 119 YIGEA 123 + + Sbjct: 121 VLRRS 125 >gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] Length = 230 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ +L R +E GY + + +G EAL KPD +++D+ L + G + Sbjct: 5 KILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVMLPGLDGWQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S +PVI +TA D+ + G + Y+ KP + IK Sbjct: 65 VCREIRKKS---NVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRR 120 >gi|48374222|gb|AAT41921.1| putative chemotaxis protein [Fremyella diplosiphon Fd33] Length = 121 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED+ ++ DL++ SG +G+EALE + PD++++DI + ++G Sbjct: 1 MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTPPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q +PV+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120 >gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 226 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++V+D ++L + Y AL NG +AL+ Q D++I+D+ ++ + G Sbjct: 4 KTVLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ +PVI +TA + D+ R K G + Y+ KP S M ++ + Sbjct: 64 HVCERIRQK---HSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRR 120 Query: 123 A 123 A Sbjct: 121 A 121 >gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 225 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++++ED +L +E GY L +G+ LE AR + PD+I++D+ L + G Sbjct: 1 MKTILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNPPDLILLDLMLPGLMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K +K++ + IP+I +TA + D + G + Y+ KP S + +K + Sbjct: 61 TEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 232 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K + +I +D L +E GY ++ +G EA+ + + D++++DI + ++ Sbjct: 1 MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ + R + +GY +G +AL+ ++PD +++D+ + + GLE Sbjct: 2 RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRRLRSAGD--DLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRA 119 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + + +GY ++G+EALE+ + +P+++I+D+ + + GLE Sbjct: 2 KIVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRTLRGSGDDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119 >gi|148549046|ref|YP_001269148.1| histidine kinase [Pseudomonas putida F1] gi|148513104|gb|ABQ79964.1| histidine kinase [Pseudomonas putida F1] Length = 785 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G G EALEL + + D+++MD + + G Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGY 723 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I++ E+P++A+TA AM + ER R G Y++KP + + ++ Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHWV 781 >gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED+ +L RD +E + + +G E L+ A Q D+II+DI L ++G Sbjct: 1 MKKILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLPGVNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ ++ IP++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKQIRA---VKNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLE 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 242 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA+E ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 237 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IV+D ++L ++ +GY +G EA R+ D++++D+ L + G Sbjct: 1 MGHVLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++D IPVI +TA + D G + Y++KP + +K + Sbjct: 61 LSLCRSWRDDGIG--IPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D+ +L L+ G+ NGME ++ R+ +PD+II+D+ L Sbjct: 63 MARTILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLMLPGED 122 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++++ + P++ +TA + D + G + Y+SKP + ++ + Sbjct: 123 GLSICRRMRSEGAF---PILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALL 179 Query: 121 GE 122 Sbjct: 180 RR 181 >gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D +++ + +E G+ + NG L+ ++ KPD++I+D+ L IS Sbjct: 1 MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K++++ +P++ +TA + D+ G + YI+KP S + +K + Sbjct: 61 GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 233 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + GY + NG +AL + + PD++++DI + + GLE+ Sbjct: 6 ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIMMPGMDGLEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+ + + +P++ ++A + D+ K G + Y++KP + + +K + Sbjct: 66 CRAIRRE---RNVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRR 120 >gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family [Prosthecochloris aestuarii DSM 271] Length = 236 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 63/118 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ KL + +E +GY +G EAL+L + D++++DI L + G E+ Sbjct: 6 ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIMLPGMDGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ +++P+I +TA + D+ + G + Y+ KP S I+ + Sbjct: 66 CRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123 >gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 234 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60 + +V+IVED+ + + G +G ALEL KP D++++D+ L + Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 61 GLEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + ++++E S + +PV+ +TA + + G + YI+KP S ++ Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368] Length = 235 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E +KL + G+ NG +AL LA D I++DI L ++ Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 233 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|167032462|ref|YP_001667693.1| histidine kinase [Pseudomonas putida GB-1] gi|166858950|gb|ABY97357.1| histidine kinase [Pseudomonas putida GB-1] Length = 785 Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G G EALEL + D+++MD + + G Sbjct: 664 ARILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLQHDDFDLVLMDCNMPVMDGY 723 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I++ E+P++A+TA AM + ER R G Y++KP + I ++ Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHWV 781 >gi|298482083|ref|ZP_07000271.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298271640|gb|EFI13213.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1458 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE ++++ + Y + NG E L+ A PD+II D+ + + GLE+ Sbjct: 1201 ILVVEDNEELKAFLKNIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1259 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QIKE++ + IP+I ++A A D + G + YI+KP S + I + + Sbjct: 1260 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1317 >gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] Length = 241 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + R+G EA +LA ++ I++D+ L E+ Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ Q++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVATQLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 1128 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y+SKP + I+ ++ Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839 >gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 242 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA+E + PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 225 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I++D E+ +K + +E G+ +G + L+ R D++I+DI L ++ G Sbjct: 1 MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ IP+I +TA D+ + G + Y++KP + + I+ + Sbjct: 61 FSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 233 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED+ + L +E GY +G EA + + DVI++D+ L Sbjct: 1 MKARILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI +Q++++ PVI +TA + D + G + Y++KP S+ M IK + Sbjct: 61 GLEICRQLRQEKNY--TPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 225 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 248 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALE R ++PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] Length = 237 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++++ +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + +I Sbjct: 1 MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E + L ++ +G+ + +G A + A +PD+II+D+ L ++ Sbjct: 1 MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU121] Length = 233 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] Length = 229 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED ++ ++E +G+ + + A+ PD++++D + S Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K +K DS +++PV+ +TA + D + + G + Y+ KP S + +K + Sbjct: 61 GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5] gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisB5] Length = 457 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N++L + + + NG +ALE+ + + D++++D+ + ++ Sbjct: 1 MSARILVVDDIPANVRLLEARLSAEYFDVVTASNGAQALEICARAECDIVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 84.0 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + L+ + N EAL A + D++I+ + L++ GL Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEANPSEALFHAAEGNYDLLIVSLGLEDFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A A R + G Y+ +P+ + + Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234] gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234] Length = 455 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L +G AL + D++++DI + ++ Sbjct: 1 MTARILVVDDVPANLKLLEARLVAEYFDVLTASDGRSALAVCENTPVDLVLLDIMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K ++ IPV+ VTA D R K G + +++KP++ M +K + Sbjct: 61 GFEVCERLKANNRTTHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 83.6 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ + AL A ++ D++I++ + L + Sbjct: 156 VLLVDGRASSQERLLRALKPI-AEVAVISDPQAALFEAAENSFDLVIVNANFDDYDPLRL 214 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + IP++ VT + R + G YI +P+ + + I Sbjct: 215 CSQLRSLERTRFIPILLVTEQGSEEMIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272 >gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] Length = 229 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L +D +E SG+ +G L+ A ++ D+ I+D+ L + G Sbjct: 1 MSKILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI +Q++++ + P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICRQVRDE---KNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 237 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +L + +E GY+ ++G AL +++I+DI L + G+E Sbjct: 6 RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIMLPDTDGVE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+E + IP+I +TA + D+ + G + YI+KP + +K + Sbjct: 66 VCRTIRE---ITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRR 121 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + R + +GY L +G+EA+E R P+++I+D+ + + GLE Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRTLRSEGWDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119 >gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 237 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + +I Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L +D +E SG+ +G LE A + + + I+D+ L + G Sbjct: 1 MSKILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+I+E+ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICKKIREE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 225 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 233 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K + +I +D E L +E GY + +G EA+ + D++I+DI + ++ Sbjct: 1 MKTISILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T++I+E +P+I ++A D+ G + YI+KP + + + Sbjct: 61 DGYEVTRRIRE---THNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + + + GY +G+ L LAR+ PD+ ++D L +S Sbjct: 1 MTTHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++++ IPVI +TA D G + Y+ KP S+ + I+ ++ Sbjct: 61 GLEICRRLRATGN--SIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|300864888|ref|ZP_07109734.1| response regulator receiver domain-containing protein [Oscillatoria sp. PCC 6506] gi|300337112|emb|CBN54884.1| response regulator receiver domain-containing protein [Oscillatoria sp. PCC 6506] Length = 128 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D ++ GY + +G+ A++ + PDVI++D+ L E+SG Sbjct: 1 MPQILLVDDEPALRDSLTYTLQKEGYEVMTAADGLSAIKQFHKQVPDVILLDLMLPEVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +I+ +P++ +TA D+ + G + Y++KP + + IK + Sbjct: 61 MEVCWRIRA---FSNVPIVMLTAKDQDIDKVWGLEAGADDYVTKPFNTRELVARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|268317907|ref|YP_003291626.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] gi|262335441|gb|ACY49238.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] Length = 523 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ L + ++ GY + NG EA E ARQH D++I+D++L + G Sbjct: 396 RRILLVEDDPDIAALIQIRLQRDGYEVVHLANGREAAEWARQHTADLVILDVKLPGMDGF 455 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++ E+P++ +T+ + + R + G + Y+ KP S +++ + Sbjct: 456 ELLAFLRAQPAFAEVPIVMLTSLSQEQHVVRGFELGADDYVVKPFSPVELSARVRRLLHR 515 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 52/120 (43%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 ++++VE ++ L +++T + EA + +Q + +II ++ L ++ G Sbjct: 103 RLLLVEPDDGLADLLTAMLQTPYRQIHRVATAAEAQQWLQQQRSAHLIITELFLPDLDGR 162 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++ + Q++P++ ++A + G + + KP + + + Sbjct: 163 SLILWIRQQPQTQQMPILVLSAHLSSAVKAECYALGADDVLEKPFDPAELSLIVASLLQR 222 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + R + +GY L +G+EA+E R P+++I+D+ + + GLE Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRTLRSEGWDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119 >gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 71/116 (61%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN+ N+ +E+ GY + NG +AL+ AR+ PD+IIMDIQ+ ++GLE Sbjct: 835 ILLAEDNQANIDTISSYLESRGYEMVLAENGQQALDFAREKCPDLIIMDIQMPGMNGLEA 894 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QI+ + + +IP+IA+TA AM D G Y++KPI L + TI++ + Sbjct: 895 IRQIRNEQKFIDIPIIALTALAMPSDRTTCLAAGANEYLTKPIKLKQLVLTIQQLL 950 Score = 51.7 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 4/118 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETS---GYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 V++++ ++ Y ++ EAL + P++I++D + Sbjct: 8 TVLLIDKCSEERANMTRHLQQDSLYNYQIIEFSIAKEALNWCLEKTPEIILLDFASVNEN 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIK 117 ++++ + VI + + R K G + Y+ K I+ I I+ Sbjct: 68 ASIFLEKLRSRLSNSQFTVILLIKPGDEDLAVRAMKSGAQDYLIKNQITPEILQRVIR 125 >gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G EAL + P+++++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S + P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRAKS---DTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] Length = 234 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + +++IV+D ++ +E + + L+ N E+ +PD++++D L + Sbjct: 1 MSRNRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G+E+ +++K D E+P+I +TA + + ++ + G + YI+KP S + IK Sbjct: 61 TGIELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAV 120 Query: 120 IGEA 123 + A Sbjct: 121 LRRA 124 >gi|291445851|ref|ZP_06585241.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348798|gb|EFE75702.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + R + GY +G +AL +A + PD+I++DIQ+ + GL Sbjct: 30 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 89 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 90 TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 147 >gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 228 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +ET+GY +G A E P ++++D+ L I G+E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLPGIDGME 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS +PVI +TA D+ + G + Y+ KP + +K + Sbjct: 67 VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122 >gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 238 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EA+ R+++P++I++D+ L I G Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ IP+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 EVCREVRK---TSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRR 121 >gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 233 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY + +G EALE+ +PD++I+D+ L E+ G Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 225 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++SE +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESE---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 234 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D L + ++ +GY +G+ A + A++ + + I++D+ L E+ G Sbjct: 5 MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + KQ+++D P+I VTA + D + G + YI+KP S + +K + Sbjct: 65 MTVLKQLRQDKV--STPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLR 122 Query: 122 EA 123 + Sbjct: 123 RS 124 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY +G+EALE+ +PD +++D+ + + Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2] gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719] gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192] gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas aeruginosa 39016] gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas aeruginosa UCBPP-PA14] gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719] gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192] gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas aeruginosa 39016] Length = 227 Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++D+ L I G Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120 >gi|298385028|ref|ZP_06994587.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298262172|gb|EFI05037.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1450 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE ++++ + Y + NG E L+ A + PD+II D+ + + GLE Sbjct: 1192 TILVVEDNEELKAFLKNIL-SENYTVITAPNGKEGLQHAVDNIPDLIISDVMMPVMDGLE 1250 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++IKE++ + IP+I ++A A D + G + YI+KP S + I + + Sbjct: 1251 MIRKIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309 >gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D+ ++ + +E SGY EA + + KPD+I++DI + E G Sbjct: 1 MSKILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPETDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K I+ + + PVI +TA + D+ + G + YI KP + +K + Sbjct: 61 YEILKWIRRE---HQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 242 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 135 >gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] Length = 247 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE A Q+ D+I++DI + G+E Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 75 VCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRS 131 >gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D +++ + +E G+ + NG L+ ++ KPD++I+D+ L IS Sbjct: 1 MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K++++ +P++ +TA + D+ G + YI+KP S + +K + Sbjct: 61 GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED +L +E+ GY + NG++ALE R + D+I++D+ L +S Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ V+ +TA + D+ G YI+KP + + I+ + Sbjct: 61 GIELLRRIRAHD--SHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAAL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 57/118 (48%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D++ + + +E G+ +G E ++ + +I+DI L E+ G E+ Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ ++P+I +TA + D+ K G + Y+ KP S + ++ I Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 >gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] Length = 232 Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED E ++ ++E + + + +AL + +PD+I++D L +SG+E Sbjct: 6 VLVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLPGVSGVEW 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K+D +IP+I VTA + D+ R G + Y++KP S + I+ + + Sbjct: 66 ARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRS 124 >gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio orientalis CIP 102891] gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio orientalis CIP 102891] Length = 1128 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 59/115 (51%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N+++ + GY ++G EAL + KP+++++DI + +SG ++ Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALAAVEKEKPELLLLDIMMPGMSGYQVC 784 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E + +P+I +TA D R G Y+SKP + I ++ Sbjct: 785 ESLRESYDHAALPIIMLTALNQTDDRIRGFSVGANDYLSKPFNKQELAARIVAHL 839 >gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 218 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + +G EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 218 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115 >gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 242 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 135 >gi|78356986|ref|YP_388435.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219391|gb|ABB38740.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 647 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 68/118 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN++N ++ ++L+E G +G+EAL L + D+I MDIQ+ + GLE Sbjct: 294 VLVVEDNKINRQIAKELLEGVGVRVTLAGDGLEALALVENYDFDLIFMDIQMPRMDGLEA 353 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ ++ PV+A+TA A+ GD E + G +I+KPI + +I Sbjct: 354 CRRIRQLQHKKQPPVVAMTAHALAGDRETSLRAGMNDHITKPIDPDELYAALANWIKR 411 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61 +V++ +DN + + ++++E+ + +G EA++L ++ V+++D ++ + G Sbjct: 146 RVLVADDNFTSRAILKEVLESLRFDVTLAESGEEAVDLVQKTAEPFKVVLLDWRMPGLDG 205 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + I++ ++ +TA+ + I + + KP++ S+ + TI + Sbjct: 206 LACARHIRQLDLPVRPTILIITAYGREEVLGEIPSEIIDGVLLKPVARSLLLNTILDALP 265 Query: 122 E 122 E Sbjct: 266 E 266 >gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 226 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+ +V+D++ ++ +E G+ Q +G AL ++ P ++I+DI L I G Sbjct: 4 SQKIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K++++ ++P+I +TA D+ + G + YI KP + +K + Sbjct: 64 IALCKEVRK---FSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED+ L + +E GY +G + L H+PD I++DI L +I G E+ Sbjct: 7 VLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIMLPKIDGWEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++D + +PVI +T D+ + + G + Y+ KP + +K + Sbjct: 67 CREIRKD---RNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRR 121 >gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] Length = 237 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL+L Q+ +++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 225 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED R + GY +G LELA D+I++D+ L I G Sbjct: 1 MTRILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ DS +P+I +TA D + G + Y+ KP + + I+ + Sbjct: 61 LEVARRLRADS---NVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1141 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 76/127 (59%), Gaps = 6/127 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N ++ ++++ + G + NG +ALE + + D+++MDIQ+ + G Sbjct: 790 KRILLVEDNEINRQVAQEILASVGMEVFEAYNGEKALEFLKGNDVDLVLMDIQMPVMDGH 849 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-- 120 E T++I++ + +++P+IA+TA AM D E+ ++ G +I+KP + +++ Sbjct: 850 EATRRIRDQARFKDLPIIAMTAHAMLADIEKSKEVGMNDHIAKPFDPDDLFAVLNRWLSG 909 Query: 121 ----GEA 123 A Sbjct: 910 AAGGRRA 916 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEISG 61 ++V+DN + + + ++E G ++G EA++ ++++D ++ E+ G Sbjct: 648 LVVDDNPTSRIILKGMLEYMGLSVTTVKSGAEAIDALHGRRGADAFRLLVVDWRMPEMDG 707 Query: 62 LEITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE ++I +D + + P+ V+A+ +R + G + KP++ S + + + Sbjct: 708 LETAERILKDEAIAVKPPMFMVSAYGNASLVKRTNELGFRGLLFKPVNQSFLFNLVVETL 767 Query: 121 GE 122 G+ Sbjct: 768 GK 769 >gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 256 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IVED + + GY ++G AL +PD++I+DI L + G Sbjct: 21 ATILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLPGMDGF 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++D ++ ++ +TA + + D+ G + Y++KP S +K + Sbjct: 81 EVCRRIQQDF---DVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRR 137 Query: 123 A 123 + Sbjct: 138 S 138 >gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + ++G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP IK + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRR 118 >gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 255 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + +GY + +G EAL + Q PD+I++D+ L ++ G Sbjct: 15 KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDGYG 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ L ++P+I ++A D G + Y+ KP S I + Sbjct: 75 VCRELRK---LSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRR 130 >gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110] gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 457 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + NG EAL ++R+ + D+I++D+ + ++ Sbjct: 1 MSARILVVDDVPANVKLLEARLSAEYFDVMTASNGTEALAISRRAECDIILLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKTDPATHHIPVVMVTALDSPSDRNRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + + L+ + N EAL A + D++I+ + L GL Sbjct: 157 RILLVDDRQSSYERLASLLAAE-HTVDVEPNPTEALFHAAEGNYDLLIVSLDLNNFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A R + G Y+ +PI + + Sbjct: 216 LCSQARSLERTRHVPILAI-ADPENSTRLLRGLEIGVNDYLLRPIDKTELLA 266 >gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] Length = 229 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ +++S +EIP+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++VED + ++ + ++ +GY +G+EA+EL + KPD++++D+ L E +G Sbjct: 1 MKSILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVMLPERNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI + I+E S PVI +TA + + G + YI+KP + + + Sbjct: 61 WEILQYIREKS---SCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 290 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++ ++ +GY + +G EALE+ + +PD++++D+ L ++ G Sbjct: 26 ATILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDGF 85 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + YI KP S I + Sbjct: 86 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142 >gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 233 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY + +G EALE+ +PD++I+D+ L E+ G Sbjct: 1 MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes] Length = 237 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++++D + + + + G+ +G EALEL + +PD+I++DI L G+ Sbjct: 4 KKILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 64 EVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR 120 >gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] Length = 228 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ +E G+ + +G EAL L + PD+I++D L +SG+E Sbjct: 6 TVLVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSVSGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+K +E + +P+I ++A + + D R + G + Y+ KP S+ M ++ + Sbjct: 66 VCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRR 124 >gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + + G+ +G EA++ ++ PD++I+D+ L + Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ ++P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVAREVRQ---THDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] Length = 231 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D +++ + +E G+ + NG L+ ++ KPD++I+D+ L IS Sbjct: 1 MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K++++ +P++ +TA + D+ G + Y++KP S + +K + Sbjct: 61 GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601] gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601] Length = 239 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + +L + +E Y+ + NG +AL++A ++ DVI++D+ + G+E Sbjct: 6 KVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+I+ + P++ +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKEIR---MAKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA 122 >gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 833 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 9/128 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + + ++E G+ NG EALE DV++MD+Q+ + G+E Sbjct: 573 VLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAIDNRHFDVVLMDVQMPVMGGIEA 632 Query: 65 TKQIKEDS---------ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T+ I+ + + +P+IA+TA AM+GD ER + G + Y++KP+ Sbjct: 633 TQAIRAREARRSWVLAGDWKPVPIIAMTAHAMEGDRERCLQAGMDDYVAKPVRPEALFAA 692 Query: 116 IKKYIGEA 123 I++ +G A Sbjct: 693 IERVLGPA 700 Score = 55.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 7/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQH--KPDVIIMDIQLQE 58 +V++ N ++ + A +G +AL A ++MD L E Sbjct: 418 RVLVASANAAFADFLCATLQEAALRAEAACSGVAVEQALARAADGSDPFAFLLMDADLPE 477 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY-ISKPISLSIFMETIK 117 G + ++ + + + + + + D R + G Y ++KP S + ++ Sbjct: 478 PGGFALAQRFAAAWPRPDRIIPMMASHSQRNDALRCEELGL-GYRLAKPFSAEDLLAVLR 536 >gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 460 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N+KL ++ Y +G EA++L + +PD+I++DI + +++ Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVSVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K++K D IP+I VTA D + G + +++KPI+ + IK Sbjct: 61 GFQVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 84.8 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 53/118 (44%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++++ + ++++ + MEAL++ ++ D+II D+Q + GL + Sbjct: 159 ILVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + E + P++ ++ K + + G Y++ P+ + + + Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276 >gi|75907998|ref|YP_322294.1| metal dependent phosphohydrolase, HD region with response regulator receiver modulation [Anabaena variabilis ATCC 29413] gi|75701723|gb|ABA21399.1| Metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation [Anabaena variabilis ATCC 29413] Length = 414 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++V+D+ + L+ GY ++ +G A++L Q +PD+I++D+ + E+ G Sbjct: 93 SPKILVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDG 152 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + +K+D + IPVI +TA + R + G + ++SKP + +K + Sbjct: 153 FEVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLV 211 >gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+++V+D+ ++ + + Y ++ R G +ALE P+++++D+ + + Sbjct: 1 MSIAKILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE + I+ +IPVI ++ + D+ G + Y++KP + + I+ Sbjct: 61 GGLETCRAIRS---GTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAA 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271] Length = 218 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115 >gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae OXC141] Length = 235 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E ++L + G+ NG +AL LA D I++DI L ++ Sbjct: 1 MTKQVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRLRAKGI--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] Length = 234 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L + G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + YI+KP S + I+ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra magnipapillata] Length = 566 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 65/115 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +N KL L++ G+ NG AL++ + D+I+MD+ + + GLE Sbjct: 312 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPYDLILMDMMMPVMDGLEA 371 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ + + IP+IA+TA AM+ D + G + YI+KPI + I + Sbjct: 372 TRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKILQL 426 >gi|237799889|ref|ZP_04588350.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806381|ref|ZP_04593085.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022744|gb|EGI02801.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027494|gb|EGI07549.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 245 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEASSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 237 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++++ +D++ L + +E Y+ NG EAL L Q+ +++I+D+ + +I Sbjct: 1 MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 236 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 70/124 (56%), Gaps = 5/124 (4%) Query: 1 ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+ K ++IV+D + L +++ GY+ ++ NG EAL + R+ D++I+D+ + + Sbjct: 1 MMGNKTILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G++ +I+E+ +E+P+I ++A + D+ G + YI+KP + + +K Sbjct: 61 LNGIDTCLKIREE---REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKS 117 Query: 119 YIGE 122 + Sbjct: 118 QLRR 121 >gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 242 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135 >gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264] gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264] Length = 224 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED+ +L ++ G+ +G E L +A+ D+I++D+ L ++S Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVMLPKMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+E ++P+I +TA D+ G + Y++KP S + IK + Sbjct: 61 GMEVCKRIRE---GSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ +D+ ++ +E +G +G AL +H PD++++DI + E+ Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHTPDLVVLDIGMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ ++PV+ ++A + D + G + Y++KP S + + + Sbjct: 61 GLEVCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 246 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++++D+ ++L +E SGY L+ +G + A Q PD+I++D+ L ++ G Sbjct: 1 MPRVLVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ D EIP++ +TA D+ G + Y++KP + + ++ + Sbjct: 61 LTICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 227 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + GY + NG+EA++LA++H+P +II+D+ + Sbjct: 1 MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I+ + +L++ + TA + G + YI+KPI + + +K Sbjct: 61 EMDGIEACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ +G AL LAR +PD++++D+ L ++ G Sbjct: 10 ARLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++E + Q +PV+ +TA D+ + G + Y++KP SL + I+ + Sbjct: 70 TVTRRLRE--KGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D + + R + +GY + +G +A+EL + +P ++I+D+ + ++ GLE Sbjct: 2 KILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + P++ +TA D G + Y+ KP +L + ++ + Sbjct: 62 VCRTLRSTGDDR--PILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRRS 119 >gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] Length = 235 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E +KL + G+ NG +AL LA D I++DI L ++ Sbjct: 1 MTKQVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 620 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++V+D + L + SGY ++ +G EAL++ ++ ++I+DI + ++ Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++E IP++ ++A + D+ + G + Y++KP + +K I Sbjct: 61 GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 237 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D ++L + +E G+ +G+ AL A +PD+II+DI L ++ GL Sbjct: 4 ARILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + P+I +TA + D + G + YI KP S + +K + Sbjct: 64 EVCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLR 122 >gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2M] gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2] gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD1] gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD1] gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2] gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2M] Length = 235 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 3 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612] gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612] Length = 233 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED +L + +E G+ G A+E +PD+II+D+ L G Sbjct: 1 MKKILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ D L IPVI +TA + + D+ + G + Y++KP S+ +K + Sbjct: 61 LTICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] Length = 268 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V+IV+D ++ ++ GY + +G EAL + Q +PD+I++D+ L ++ G Sbjct: 24 ATVLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLPKLDGF 83 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 84 AVCRRLRAESC---VPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 246 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ +D + R +E G+ NG EA+ L ++H+PD++++D+ + ++ Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ I++ + P+I +TA + D G + Y++KP S + + + Sbjct: 61 GLEVCDLIRQ---TDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNIL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 260 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ +L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 1 MKISILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 244 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 54/119 (45%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + E G+I +G E E A+ PDV++ D+ + + G Sbjct: 19 RVLLVDDEPGLRTAVQAYFEDEGFIVSTAADGEEGWEKAQSEVPDVVLSDVMMPRVDGFG 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ED L PVI +TA M D + G + YI KP + ++ + Sbjct: 79 LLKLLREDERLGGTPVIFLTAKGMTADRIAGFRAGVDDYIPKPFDPDELVARVRNVVQR 137 >gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 223 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D E ++ ++ G+ NG + + ++ KPD++I+D+ + + G Sbjct: 1 MDKILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ QI+ L+ + + +TA + G + YISKPI + + + + Sbjct: 61 IEVCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 2107 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++V+D+ N+ ++E + NG EAL+ ++ D+++MDI + E+ G Sbjct: 1987 KKILVVDDDVRNIFAITTILEQHLMDVVYAENGREALDQLDRNPDIDIVLMDIMMPEMDG 2046 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ D +PVIA+TA AMKGD ++ + G YI+KP+ + ++ ++ Sbjct: 2047 YEATRRIRSDGRYGRLPVIALTAKAMKGDRDKCIEAGASDYITKPVDPDQLISLLRVWL 2105 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+++ + D + G+ L +G E L +A+ +KPD I +D++L ++ G + Sbjct: 1721 LIIEDDDVFARTLLDAVRERGFRGLVALSGNEGLAVAKSYKPDAITLDLRLPDMDGWVVL 1780 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYIGE 122 ++K DSE IPV ++A A DE R + G A+++KP+ + I+ ++ Sbjct: 1781 DRLKHDSETGHIPVHIISAAA---DERRGLENGALAFLNKPVGPEALDVALSDIESFLDR 1837 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+IVED+++ + +LI+ + AL+ D +I+D++L E+SG Sbjct: 1840 KRVLIVEDDDVQRRALVELIDGEDVSTEAVGSAEAALQALESGTFDCMIIDLKLPEMSGD 1899 Query: 63 EITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++ KE + +PVI T +GDE +R+ E I K + S + Sbjct: 1900 ELIEKFKERPAFRRMPVIVYTGKELSEGDEISLRRL-AETIIVKDVRSPERLLA 1952 >gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 234 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + R +ET G+ L+ + +A L PD++++D L SG Sbjct: 1 MKKILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++K++ Q +PVI VTA A + D + G YI+KP SL + I+ Sbjct: 61 IELLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFR 120 >gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 262 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ L +E SG+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L +K + + Sbjct: 65 CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRS 123 >gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 256 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 23 MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 83 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139 Query: 122 E 122 Sbjct: 140 R 140 >gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] Length = 227 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + GY + NG E ++ A+++ P +II+D+ + Sbjct: 1 MKKKEIKILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNNPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E +QI++ +E + +TA + G + YI+KPI + + +K Sbjct: 61 EMDGIEACEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 225 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 238 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D E +L + +E GY+ + NG++AL++A + I++D+ + E G+ Sbjct: 6 TVLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLMMPEKDGVA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++E + P+I +TA + + + G + YI KP S + +K + + Sbjct: 66 VATELRE---TKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRS 122 >gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] Length = 229 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D +L +K R + G +G EALELA+ ++ D++++D+ L ++ Sbjct: 1 MGKRVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QI+ + ++P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFAVCQQIR---DFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IV+DN ++ L+ G+ + NG +AL L Q D+II+DI + Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G + ++I+E L P++ ++A + D+ G + Y++KP S + + K Sbjct: 61 NGYQTCRKIRE---LSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKAL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|254235813|ref|ZP_04929136.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719] gi|126167744|gb|EAZ53255.1| hypothetical protein PACG_01754 [Pseudomonas aeruginosa C3719] Length = 786 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ +H D+++MD + + G E Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779 >gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590] gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590] Length = 238 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 6 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 66 GMEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|294505895|ref|YP_003569953.1| two-component system sensor histidine kinase/response regulator, hybrid [Salinibacter ruber M8] gi|294342223|emb|CBH23001.1| two-component system sensor histidine kinase/response regulator, hybrid [Salinibacter ruber M8] Length = 802 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++++DN + L R +E Y + +G E LAR PD++I D+ + E+ G E Sbjct: 534 TVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLARTLLPDLVISDVMMPEVDGFE 592 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+D ++ +PV+ +TA A D+ G +AY++KP + I+ I Sbjct: 593 LCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLI 649 >gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D K+ R+ E GY + NGMEA+ L + D+IIMD+ + + G Sbjct: 1 MAHILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I + + IPVI ++A + D+ + G + Y+ KP S M +K + Sbjct: 61 YSACKEIHKS---KNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1316 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 75/123 (60%), Gaps = 6/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN LN ++ ++++E +G G ALELA +H DV++MDIQ+ + GL+ Sbjct: 1087 HVLVVEDNLLNQEVAQEILEQAGMAVTLADTGERALELAAEHAFDVVLMDIQMPGMDGLQ 1146 Query: 64 ITKQIKEDSE------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T++++ ++ LQ +PVIA+T AMK D+ R G + +I+KP + T++ Sbjct: 1147 TTQELRRMADKTGKHFLQNLPVIAMTGHAMKSDQNRCLAAGMDDFIAKPFRIDQLFATLQ 1206 Query: 118 KYI 120 +++ Sbjct: 1207 RWL 1209 >gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 224 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+E ++ ++ G+ + +G +AL++ R +PD++++D+ L + Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +Q++ +S ++P++ +TA A D R + G + Y+ KP + + ++ + Sbjct: 61 GIEVCRQVRAES---DVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 255 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ +L +E +G+ +G++ LA Q+KPD+I++D+ L + GL + Sbjct: 5 ILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKGQALALQYKPDLILLDLMLPNVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA D+ G + Y++KP L IK + Sbjct: 65 CQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALLRR 122 >gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 225 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D KL +D + GY + +G E LEL Q D++I+DI + +I G Sbjct: 5 MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E+S+ +P+I +TA A + D+ + + Y+ KP + + + +K + Sbjct: 65 WSVCRKIREESQ---VPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IV+D + + + GY +G++ALE A + P++I++D+ + + GL Sbjct: 11 ARILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA GD G + Y+ KP L + I+ + Sbjct: 71 TAARRLRATGVT--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G EAL ++P++I++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRAKS---NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRR 121 >gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEI 59 M K+++V+D K+ RD + GY+ + +G AL++ + D+IIMD+ + ++ Sbjct: 1 MNNKILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K++++ L ++P++ +TA + + DE + + G + YISKP S I + Sbjct: 61 DGWQLCKEVRK---LSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNAL 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] Length = 229 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 66/119 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ ++ G+ + +G EAL L + +PD+I++D + +SG+E Sbjct: 7 TVLVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K + + IP+I ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 67 VCRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125 >gi|300865377|ref|ZP_07110187.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300336628|emb|CBN55337.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 424 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 61/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ + +DL+E+ G+ +G + L A PD+II D + I G Sbjct: 1 MAKILVIDDDVTVQIVLQDLLESEGHEVAIAFDGQDGLSQAHHRPPDLIICDWMMPYIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q+K + EL + I +TA D + G + ++SKPI + ++ + Sbjct: 61 LEVCRQLKANPELATVFFILLTAREELDDRVKGLDNGADDFLSKPIETEELLARVRAGLR 120 >gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] Length = 236 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L +E GY + NG ELA ++ D II+D+ L + G Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEITK ++ + + P++ +TA + D+ + G + Y++KP S + +K Sbjct: 61 LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED + + GY L NG ALELA ++ PD++++DI L EI G Sbjct: 1 MTTVLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAEEN-PDIVVLDILLPEIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ S +P+I +TA + D + G + Y++KP S+ + IK + Sbjct: 60 LEVCRRLRQRS---SVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] Length = 233 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G +AL + P++I++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + I+ S P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCRDIRSRS---NTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRR 121 >gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51] gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + + ++ G+ NG+ AL L +++ D++++D+ L +SG E Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLMLPGLSGEE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I++ S PVI +TA D + G + YI KP S + IK + Sbjct: 62 ICREIRKISAT---PVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRR 117 >gi|54303252|ref|YP_133245.1| putative two-component response regulator [Photobacterium profundum SS9] gi|46916680|emb|CAG23445.1| putative two-component response regulator [Photobacterium profundum SS9] Length = 235 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+DN + + +G+ + NG+ +L + PD+II+DI + G Sbjct: 4 KQILVVDDNFELRDALTEYLGRAGFSVIGAENGVAMWKLLESNTPDLIILDIMMPGDDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + P+I +TA + D + G + YI+K S + IK + Sbjct: 64 TLCQKLR---RTSDTPIIMLTAVTEETDRVAGLEMGADDYITKSFSPRELLARIKTILRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED +L +E+ GY + NG++ALE R + D+I++D+ L +S Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ V+ +TA + D+ G YI+KP + + I+ + Sbjct: 61 GIELLRRIRAHD--SHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAAL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 234 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L ++ + Y + NG++A++ ++ + D +IMD+ L ++ Sbjct: 1 MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E TKQI++ +E +IP+I +TA + + D+ + G + Y++KP S + IK + Sbjct: 61 GVEATKQIRKFNE--QIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8] gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98] gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8] gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98] gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] Length = 236 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L +E GY + NG ELA ++ D II+D+ L + G Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEITK ++ + + P++ +TA + D+ + G + Y++KP S + +K Sbjct: 61 LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|153872867|ref|ZP_02001635.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070667|gb|EDN68365.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 379 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D N+ L D + +G+ L ++G AL+ PD+I++D+ + +SG Sbjct: 9 KTLLIVDDIPANVSLLLDFLTKAGFKVLVAKDGESALKKTEYAHPDLILLDVMMPGLSGF 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K E + IP+I +TA + D+ + G YI+KPI + + ++ Sbjct: 69 EVCKILKSKEETKNIPIIFMTALSETVDKVKGFSLGAVDYITKPIQHEEVLARVTTHL 126 >gi|146282783|ref|YP_001172936.1| two-component response regulator GltR [Pseudomonas stutzeri A1501] gi|145570988|gb|ABP80094.1| two-component response regulator GltR [Pseudomonas stutzeri A1501] gi|327481121|gb|AEA84431.1| two-component response regulator GltR [Pseudomonas stutzeri DSM 4166] Length = 244 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + + SG+ +G + D++I+D+ L + G Sbjct: 6 KNILLVDDDQEIRELLQTYLSRSGFQVRGVPDGAQFRSALCAEPADLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ L +P+I +TA + + D + G + Y+ KP S + IK + Sbjct: 66 SLCRWIRQHERLASMPIIMLTASSDEADRVVGLELGADDYLGKPFSPRELLARIKALLRR 125 >gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1319 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N ++ +L+ SG I NG EALE QH D+I+MDIQ+ + G Sbjct: 963 ARVLLVEDNAINREVVLELLNNSGLIIETAVNGQEALERVSQHPFDLILMDIQMPLMDGY 1022 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ ++ P++A+TA A + D + + G +I+KP++ + E +++++ Sbjct: 1023 TATRAIRTLPGWEQTPILALTASAFEEDRKACKAAGMNDFIAKPVTPAKLFEALQQWL 1080 >gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 233 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response regulator protein [Burkholderia sp. TJI49] Length = 233 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 248 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ +++ G+ + +G EA+ A PD+I++D+ L ++ Sbjct: 25 MKTKILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPSMN 84 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + I++ +P++ ++A D + G + YI+KP + ++ + Sbjct: 85 GVDVCRAIRK---TSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQL 141 Query: 121 GE 122 Sbjct: 142 RR 143 >gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 246 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + +E S + N E EL +Q+ PD++I DI + E+ G + Sbjct: 21 RLLLVDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQNLPDLVITDIMMPEVDGYQ 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-GE 122 KQ++ED + +PV+ +TA M D + + GC+AY+SKP + +K + Sbjct: 81 FLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVIVKNLLERR 140 Query: 123 A 123 A Sbjct: 141 A 141 >gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676] gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676] Length = 242 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + YI+KP I+ + Sbjct: 81 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRR 135 >gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 248 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALE Q PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + L +G AL + KPD+I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ ++ P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRREN---NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1] gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1] Length = 235 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ A++ N +A L PD++++D L S Sbjct: 3 MPSNILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ ++++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 63 GIAFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium Y4I] gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium Y4I] Length = 229 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ +E G+ L+ +G EAL + + PD+II+D + +SG+E Sbjct: 7 TVLVVEDEMAQREVLAYNLEADGFRVLRAGHGEEALLVVEEDMPDIIILDWMMPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K SE + IPVI ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 67 VCRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 >gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 229 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ +++ ++IP+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++ ED ++ ++ G+ L +G ALE H P ++I+DI + + G Sbjct: 1 MKKILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S PVI +TA + + G + YISKP + + + Sbjct: 61 WSVLEKIREKSA---CPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 236 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VED + +E Y +G EALE +H D++I+D+ L + G Sbjct: 5 TRRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++S ++P+I +TA D + G + Y+ KP S + + + Sbjct: 65 ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916] Length = 280 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D ++ ++ +GY + +G +ALE+ PD++++D+ L ++ G Sbjct: 35 ATILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDGF 94 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 95 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 151 >gi|83815858|ref|YP_444228.1| sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83757252|gb|ABC45365.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Salinibacter ruber DSM 13855] Length = 802 Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++++DN + L R +E Y + +G E LAR PD++I D+ + E+ G E Sbjct: 534 TVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLARTLLPDLVISDVMMPEVDGFE 592 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+D ++ +PV+ +TA A D+ G +AY++KP + I+ I Sbjct: 593 LCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLI 649 >gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] Length = 230 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 67/119 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ + GY +Q +G EAL+L PD+I++D + ++SGLE+ Sbjct: 9 VLLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDELPDLIVLDWMMPKVSGLEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K E + +P++ ++A + + D R + G + Y+ KP S++ M ++ + A Sbjct: 69 CRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRA 127 >gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E ++L + GY +G AL+LA D I++DI L ++ Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRIRAKGI--QTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium] Length = 232 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 ++++ +I ED E L +E GY ++ +G EAL + + D+II+DI + ++ Sbjct: 1 MRRISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+Q++ +P+I ++A D+ G + YI+KP + + + Sbjct: 61 DGYEVTRQVRAQ---YNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQ 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20] gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20] Length = 229 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D L + +E +GY +G A +LA+Q D I++D+ L I G Sbjct: 1 MAKILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPVIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K +++D PVI VTA + D + G + YI+KP S + +K + Sbjct: 61 MTLLKNLRQDKV--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + L +E GY + +G +A +LA D II+D+ L + G Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EITK+++++ E P++ +TA D + G + Y++KP S + +K Sbjct: 61 IEITKKLRQEKI--ETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252] gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252] Length = 1346 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ EDN +N K+ +E GY +G +A+E A + D I+MD+ + + G E Sbjct: 1223 HLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEAALRGGYDAILMDVHMPVMDGFE 1282 Query: 64 ITKQIKED--SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T QI+E + P+IA+TA A++G+ ER + G + YI+KP ++++I Sbjct: 1283 ATAQIREREAERGRHTPIIAMTANALRGERERCLEAGMDDYIAKPFKKDELKAVLERWIQ 1342 Query: 122 EA 123 +A Sbjct: 1343 KA 1344 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 6/126 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V+IV+DNE N ++ R + R+G EALE+ R H ++ I+D+ + E Sbjct: 1061 RVLIVDDNEANREILRRQTLGWDMVPTLARSGPEALEMMRAAARQGHPFELAILDMMMPE 1120 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISKPISLSIFMETIK 117 + G+ + ++IK+D L + P+I ++++ ++ R + A +SKP S T+ Sbjct: 1121 MDGIMLAREIKQDPSLADTPLILLSSYLFTREDHRAMDETLFAAVLSKPTRQSYLFNTLV 1180 Query: 118 KYIGEA 123 + + E+ Sbjct: 1181 RVLQES 1186 >gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + + +++ GY +GM L LAR+ +PD+ I+D L ++ Sbjct: 1 MTAHILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLPGLT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ +IPVI +TA GD G + Y+ KP S+ + I+ ++ Sbjct: 61 GIELCRRLRATGN--KIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|269961959|ref|ZP_06176314.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi 1DA3] gi|269833282|gb|EEZ87386.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi 1DA3] Length = 1128 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y++KP + I+ ++ Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHL 839 >gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] Length = 231 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + L ++ + + N ++AL+ R PD+ I+D+ + ++ Sbjct: 1 MAEKILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GLELCRNIREQYRY---PVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|260463925|ref|ZP_05812121.1| response regulator receiver modulated diguanylate cyclase [Mesorhizobium opportunistum WSM2075] gi|259030300|gb|EEW31580.1| response regulator receiver modulated diguanylate cyclase [Mesorhizobium opportunistum WSM2075] Length = 457 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N++L + + L NG +A+E K DV+++D+ + ++ Sbjct: 1 MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IPV+ +TA D R + G + +++KP++ M +K + Sbjct: 61 GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+++++ + +++ + ++ T + A + + +++ + L Sbjct: 157 KVLLIDERKSSVERIQKMLRDR-ADLDVTSDPHAGFFQAAETPYECVMISTAFADFDPLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P+I + + R + G Y+ +PI ++ + Sbjct: 216 LCSQLRSLDRTRFVPIILLADEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274 >gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L + ++ GY +G EA+E A+ +PD+I++DI L +++ Sbjct: 1 MNEKILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKVN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K + + + ++P+I +TA D+ + G + Y++KP + IK ++ Sbjct: 61 GYDVCKTL---TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 227 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 71/120 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D + L +E G+ LQ +G++ALEL ++ +P ++++D+ L +SGL+ Sbjct: 2 KVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++++ + +P++ +TA A + D+ + G + Y++KP + +K I + Sbjct: 62 VCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRRS 121 >gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans 2-40] gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family [Saccharophagus degradans 2-40] Length = 232 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++ED++ L +E Y + +G E L L D+II+DI L + Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + ++ + P++ +TA + D + G + Y++KP S+ +K ++ Sbjct: 61 GLQVCQHLRAKNIF--TPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|261212267|ref|ZP_05926553.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC341] gi|260838875|gb|EEX65526.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC341] Length = 1112 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E LE ++ KP+++++DI + +SG ++ Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTVQDGHEVLEAVKREKPELLLLDIMMPGMSGYQVC 767 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 768 EKLRQSYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 822 >gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 225 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D E L + +E +G+ L+ +G +AL++ K D +++DI + ++ G Sbjct: 6 KTVLIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ S ++P++ +TA + D+ + K G + YI KP S + I+ + Sbjct: 66 SLCERIRWQS---DVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 241 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VED EL ++ RD + +GY +G AL LA PD+II+D L + G Sbjct: 15 RKILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRMLPGLDGA 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +P+I +TA + D + G + Y++KP+S + + + Sbjct: 75 EVCRRIRQ---TMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRR 131 Query: 123 A 123 + Sbjct: 132 S 132 >gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D ++ + GY + +G EAL+L + ++PD++++D+ + ++ G Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++DS ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 225 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++ +D +++ D +E GY G EA+ R D +++D+ L +SG Sbjct: 4 QHILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ ++P++ ++A D+ R G + Y++KP S + +K + Sbjct: 64 EACRAIRA---FSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRR 120 >gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL103PA1] Length = 232 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + ++ SGY +G+EAL PD +IMD+ + + Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE T+ ++ + ++P++ +TA D G + Y+ KP +L + ++ Sbjct: 61 GLEATRMLRSNGN--DVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALT 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED + R + G+ +G + AR+ D++I+DI L + G Sbjct: 8 ARILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ ++P+I +TA D + G + Y+ KP + + I+ + Sbjct: 68 EVCRRLRA---GSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR 124 >gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D ++ + GY + +G EAL+L + ++PD++++D+ + ++ G Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++DS ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|291568908|dbj|BAI91180.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 483 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N++L ++++ GY +G AL + +PD+I++DI + E+ G + Sbjct: 14 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK++ E Q+IPVI +TA D+ + + G Y++KP + + I+ + Sbjct: 74 VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQL 130 >gi|153835385|ref|ZP_01988052.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148868087|gb|EDL67256.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 1128 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y++KP + I+ ++ Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHL 839 >gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 229 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+V+D + ++ + + GY +G EALE + +PD++++D+ L ++ GLE+ Sbjct: 1 MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVA 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +P+I VTA + D+ + G + Y++KP S + +K + Sbjct: 61 REIRK---TYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 114 >gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D KL +D + GY + +G E LEL Q D++I+DI + +I G Sbjct: 1 MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E+S+ +P+I +TA A + D+ + + Y+ KP + + + +K + Sbjct: 61 WSVCRKIREESQ---VPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D +E GY L+ +G+EA+E + +II+D+ + ++ G Sbjct: 15 KILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPKMDGW 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S+ +P+I +TA + DE + G + YISKP S I + + + Sbjct: 75 QTCREIRQSSK---VPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRR 131 Query: 123 A 123 + Sbjct: 132 S 132 >gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 227 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + + ++ GY +G+ L R+ P++++MD+ L + GLE+ Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLMLPVMDGLEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +P++ +TA D+ G + Y+ KP S+ + I+ ++ Sbjct: 69 ARRIRK---TSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123 >gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 229 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D +L +K R +E G +G EAL++A+ + D++++D+ L ++ Sbjct: 1 MAKQVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +QI+E +P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GLSVCQQIRE---FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 246 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D + + +E S +I N EL +Q+ PD++I DI + E+ G Sbjct: 19 SPRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPEVDG 78 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120 + +Q++ + + + +PV+ +TA MKGD + + GC+AY+SKP + +K + Sbjct: 79 YQFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138 Query: 121 GEA 123 A Sbjct: 139 RRA 141 >gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D E ++L + GY ++ ++G EALEL +Q + D+I++D+ + + G Sbjct: 1 MIKILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALELVQQKEFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E KQI++ L +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WETCKQIRQ---LSNVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVLVARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1] gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1] Length = 224 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D E +L R ++ G+ + G EAL + D+ I+DI + + Sbjct: 1 MKSKILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +++KE ++IPVI +TA + D+ R G + Y++KP + +K + Sbjct: 61 GFQLVEEMKE---FKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|302873857|ref|YP_003842490.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|307689897|ref|ZP_07632343.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] gi|302576714|gb|ADL50726.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium cellulovorans 743B] Length = 366 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D N+K+ +++ GY T +G EALE+ + + ++I++D+ + E+ G E Sbjct: 8 KILVVDDTPFNIKIVSTILQEVGYNIYSTTSGREALEMVKNIRFNLILLDVMMPEMDGYE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K D + ++IP+I +TA R G Y+ KP + + +K +I Sbjct: 68 VIRKLKNDEDTRDIPIIFLTARGDSESVVRAFDEGAYDYLIKPFNPKELLSRVKTHI 124 >gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D R +E + L +G+EAL Q ++I+DI L + GLE+ Sbjct: 7 ILVVDDEPGIRNFIRRNLELRAFKVLLASDGLEALAHFDQANVVLVILDIMLPNMDGLEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I++ S +P++ +TA D+ G + Y++KP S+ M +K + + Sbjct: 67 CRRIRQKS---TVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLRRS 122 >gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 256 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 23 MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 83 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139 Query: 122 E 122 Sbjct: 140 R 140 >gi|156975687|ref|YP_001446594.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116] gi|156527281|gb|ABU72367.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116] Length = 1128 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y++KP + I+ ++ Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHL 839 >gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 223 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVED L RD + G+ L+ +G EAL + ++ D+ I+DI + ++ Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+E + P+I +TA + + D+ + G + Y++KP S + + K + Sbjct: 61 GLAVCRNIRE---VSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 230 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 72/121 (59%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IVED+E +L RD +E +G+ NG E L+ R + D++I+DI L ++G Sbjct: 1 MRKILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+I+++ ++IPV+ V+A + D+ K G + YI+KP S + + +I Sbjct: 61 YEILKKIRDE---KDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIA 117 Query: 122 E 122 + Sbjct: 118 K 118 >gi|319783842|ref|YP_004143318.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169730|gb|ADV13268.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 457 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N++L + + L NG +A+E K DV+++D+ + ++ Sbjct: 1 MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IPV+ +TA D R + G + +++KP++ M +K + Sbjct: 61 GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 64.8 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+++++ + +++ + ++ T + A + + +++ + L Sbjct: 157 KVLLIDERKTSVERIQKMLRDR-ADLDVTHDPHAGFFQAAETSYECVMISTAFADFDPLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P+I + + R + G Y+ +PI ++ + Sbjct: 216 LCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274 >gi|284050575|ref|ZP_06380785.1| response regulator receiver modulated diguanylate cyclase [Arthrospira platensis str. Paraca] Length = 487 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N++L ++++ GY +G AL + +PD+I++DI + E+ G + Sbjct: 18 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK++ E Q+IPVI +TA D+ + + G Y++KP + + I+ + Sbjct: 78 VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQL 134 >gi|161621454|ref|NP_102571.2| response regulator PleD [Mesorhizobium loti MAFF303099] Length = 457 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N++L + + L NG +A+E K DV+++D+ + ++ Sbjct: 1 MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IPV+ +TA D R + G + +++KP++ M +K + Sbjct: 61 GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 62.8 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 45/119 (37%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+++++ + +++ + ++ + A + + +++ + L Sbjct: 157 KVLLIDERKSSVERIQKMLRDR-ADLDVIGDPHAGFFQAAETSYECVMISTAFADFDPLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P+I + + R + G Y+ +PI ++ + Sbjct: 216 LCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274 >gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 257 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D ++ ++ SGY + +G +ALEL +PD++++D+ + ++ G Sbjct: 12 TATLLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ +S +P++ +++ ++ G + Y+SKP S I + +G Sbjct: 72 FAVCRRLRAESA---VPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILG 128 Query: 122 E 122 Sbjct: 129 R 129 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY +G+EALE+ +PD +++D+ + + Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 228 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + + + GY +G+ L LAR+ PD+ ++D L +S Sbjct: 1 MTAHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++++ IPVI +TA D G + Y+ KP S+ + I+ ++ Sbjct: 61 GLEICRRLRATGN--SIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 242 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED +L + +G+ +G EAL + D I++DI L I Sbjct: 1 MAKLHILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIMLPGI 60 Query: 60 SGLEITKQIKEDSELQEI--PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 SGLE+ + I+++ + P+I +TA + D + G + YI+KP S + + +K Sbjct: 61 SGLEVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVK 120 Query: 118 KYIGE 122 + Sbjct: 121 AVVRR 125 >gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] Length = 229 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED + L + +E GY +G E + + PD+I++D L ++S Sbjct: 1 MQPYILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ +E + +P+I +TA + D R G + Y++KP S++ I+ + Sbjct: 61 GIEVCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 233 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + + + + GY L +G EAL + PD++I+D+ L EI G Sbjct: 1 MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I++ +P+I ++A + D+ + G + Y++KP S +K + Sbjct: 61 LEVARTIRK---TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas fluorescens SBW25] gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25] Length = 409 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D KL L++ GY L +G EAL+L Q PD+I++DI + + G Sbjct: 6 ATLLIVDDEPQVRKLLETLLQHEGYQTLTAGSGEEALQLVAQQPPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K D IP+I ++A + + G E +ISKP+ ++ + Sbjct: 66 EVASQLKGDETTAGIPIIMLSALSEPSARVNGLEAGAEEFISKPVERVELWLRVRNLLR 124 >gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3] gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ A++ N +A L PD++++D L S Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ ++++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 358 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + GY + +G EAL+ +PD+I++D+ L +SGLE Sbjct: 133 KILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDIVQPDLIVLDLMLPGLSGLE 192 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ + +P+I +TA + D G + YI+KP S + ++ + Sbjct: 193 VCKKIR---DSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRR 248 >gi|254413625|ref|ZP_05027395.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC 7420] gi|196179732|gb|EDX74726.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC 7420] Length = 379 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ L + + GY NG E LEL +Q +P ++I D + ++G Sbjct: 1 MTQILIIDDDPAIQILLKRTLHNQGYDVTIASNGEEGLELVQQLRPALVICDWIMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +QIK L I +T+ GD + G + +I KPI ++ ++ + Sbjct: 61 LEVCRQIKATPALSTTMFILLTSLGSVGDRVKGLDAGADDFICKPIEIAELQARVRSGLR 120 >gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1207 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGLE 63 ++IV+D +N+ L + + Y +Q NG +AL+ LA+ PD+I++D+ + ++G E Sbjct: 741 ILIVDDEPVNLTLLSNQLSLHNYQVIQANNGQKALDILAQDFLPDLILLDVMMPGMTGYE 800 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T++++E L ++P+I +TA D + G Y+SKP + IK +I Sbjct: 801 VTQKVRETWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPFHKKELLARIKTHI 857 >gi|268325500|emb|CBH39088.1| conserved hypothetical protein containing response regulator receiver domain [uncultured archaeon] Length = 170 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + +E + ++ ++G+EALE R PD++++D+ L +I+G E Sbjct: 49 KILIVDDELDTLLPLKRALEMEDFNVVEAQDGIEALEKVRSEIPDLVLLDLMLPKINGFE 108 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K D IP+I +TA D+ + G + Y++KP +L IK + Sbjct: 109 VCQRLKHDEATSYIPIIMLTAKGETSDKVEGIEIGADDYVTKPFNLDELKARIKAVLRR 167 >gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] Length = 228 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + ++ED+E +L + G+ NG A E ++ KPD +++D+ + EI G Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE K ++ D E+ P+I +TA + + D+ + G + Y++KP S + +K I Sbjct: 61 LEFCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|78486516|ref|YP_392441.1| response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] gi|78364802|gb|ABB42767.1| response regulator receiver modulated metal dependent phosphohydrolase [Thiomicrospira crunogena XCL-2] Length = 348 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D N+++ L+ GY +G EAL LA ++ D+I++DI + + G E Sbjct: 6 HILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLADENDFDLILLDIMMPRMDGYE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K ++ Q+IP+I +TA + K G YI+KP + +K ++ Sbjct: 66 TCRRLKANARTQDIPIIFLTAKVDIDAISKGFKLGAVDYITKPFHGEELIARVKTHL 122 >gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 235 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + +L + +E +G+ L NG EALE + D++++D+ L EI G Sbjct: 1 MGKILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN-IDLVVLDLMLPEIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ D +L++I +I +TA + + + G + Y++KP S + IK Sbjct: 60 MEVCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D E + RD +E Y +G EALE + + PD+I++DI + + Sbjct: 1 MREKILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLY-PDLILLDIMMPGKN 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ I+ ++ P+I +TA + D + G + YI KP SL I ++ Sbjct: 60 GYEVCNDIR---DIVSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] Length = 227 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I +D + ++ + +E G++ + T +G AL + PD+II+D+ L EIS Sbjct: 1 MTKQILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLMLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+++S +P+I +TA D+ + G + Y++KP + +K + Sbjct: 61 GWDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 253 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D ++ + GY + +G EAL L PD++++D+ + +++G Sbjct: 15 KILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVMMPKLNGYG 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ SE +P+I +TA D + G + Y++KP S I+ + Sbjct: 75 VCQKIRTQSE---VPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRR 130 >gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 214 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D+ +E G++ +G+ Q PD+I+ DI + ++ G Sbjct: 1 MQKILIVDDDRTLRAAITRYLEDRGFVVNSAASGLAGFNSFSQEVPDLIVSDIVMPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +I+ Q +P I ++A + D + G + Y+ KP + I+ + Sbjct: 61 FELCTKIRNTDAGQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQLA 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 233 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++I +D +L +D + Y AL R+G EALEL R ++P ++I+DI + + Sbjct: 1 MTKEKILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++I+ +S +P+I ++A + D+ G + YI KP S + +K Sbjct: 61 DGMEVCRRIRAES---NVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + L + G+ +G++AL A PDV+I+D+Q+ + GLE Sbjct: 10 RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ +PV+ +TA D + G + Y++KP L ++ + + Sbjct: 70 TLERLRAHD--PHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRS 127 >gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 242 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E ++L + GY +G AL+LA D I++DI L ++ Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+ E P++ V+A + + D+ + G + Y++KP S M +K + Sbjct: 61 GIEVCKRIRAKGI--ETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 235 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED + +L R L+E +G+ + NG+EAL L + PD+I++D+ + E+ G Sbjct: 3 MAEVLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDVTMPELDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ +L E+PV+ +TA A + D+ R K G + Y++KP + ++ + Sbjct: 63 WQTLERIR---DLTEVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158] gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158] Length = 235 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 3 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 235 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 3 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|119488053|ref|ZP_01621497.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] gi|119455342|gb|EAW36481.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] Length = 469 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N+K+ D ++ G+ L ++G L + KPD+I++D+ + + G E Sbjct: 9 ILIVDDNPTNIKVLSDFLKDFGFKVLIAKDGESCLHKLEKIKPDLILLDVMMPGVDGFET 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK ++IPVI +TA D+ + G YI+KP+ + + ++ Sbjct: 69 CRRIKALDSTKDIPVIFMTALTDPVDKLKGFTLGAVDYITKPLQHEEAIARVNVHL 124 >gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1] gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 248 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ +G + +L ++ ++++D+ L G+ Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIA 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+++E++ +IP+I +TA D + G + Y+ KP + + IK + Sbjct: 75 ICKRLREEN--SDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 131 >gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 228 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ +D + + ++ GY A NG E LE+ + ++ D++I+D+ + ++ G Sbjct: 1 MNRVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E +++++ IPVI +TA + D + G + Y+ KP S+ + +K + Sbjct: 61 FETLRELRK---FSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] Length = 231 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ + R + +GY + +G EAL + +PD++I+D+ + ++ GLE Sbjct: 2 KILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ E + P++ +TA + G + Y++KP +L + + + A Sbjct: 62 VCRELRSQGE--DTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRA 119 >gi|224370414|ref|YP_002604578.1| two-component transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223693131|gb|ACN16414.1| two-component transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 368 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 1 ML-----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55 M+ +++V+D N++L L+ GY NG ALEL + PDVI++D+ Sbjct: 1 MMDIPGSPTILVVDDEPRNLRLMEALLIPMGYRVQLVENGEAALELLEKISPDVILLDVM 60 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + + G E+ +Q+K + + +P++ VTA D + + G + +++KP+ + Sbjct: 61 MPGMDGYEVARQVKSREKTRSVPIVMVTALREVTDRVKALEAGADDFLTKPVDKTELTAR 120 Query: 116 IKKYI 120 ++ + Sbjct: 121 VRSLV 125 >gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 239 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK +++++D ++L ++ GY L+ + EAL++ + D+ I+DI L + Sbjct: 1 MAKKNILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + ++ + + PVI ++A + + D+ + G + YI+KP S+ + I+ Sbjct: 61 DGFELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAI 120 Query: 120 IGE 122 Sbjct: 121 FRR 123 >gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 248 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D ++ + GY + +G EAL+L R +PD++++D+ + ++ G Sbjct: 10 TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 125 >gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E +L +D +E SG+ +G + L +A D++I+D+ L + G Sbjct: 1 MSRILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++++E ++ P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICRKVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|258627290|ref|ZP_05722076.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM603] gi|258580473|gb|EEW05436.1| sensory box sensor histidine kinase/response regulator [Vibrio mimicus VM603] Length = 769 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E LE ++ KP+++++DI + +SG ++ Sbjct: 365 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 424 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 425 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 479 >gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901] gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901] Length = 1547 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 7/126 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQEI 59 +V++VEDN +N + R +++ G + NG+EAL+ + + +++MD Q+ E+ Sbjct: 1263 RVLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDALQSAQQWDLYSLVLMDCQMPEM 1322 Query: 60 SGLEITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G E T+ I+ ++IP+IA+TA AMKGD+ER G + YISKPI + + + Sbjct: 1323 DGYETTRSIRAGKAGEIYKKIPIIAMTANAMKGDKERCFAAGMDDYISKPIDPQVLEDRL 1382 Query: 117 KKYIGE 122 +K++ Sbjct: 1383 RKWLPR 1388 Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57 K V+++EDN+ +L +++ G +G + L + K PDV+++D L Sbjct: 1109 KSVLLIEDNKSVRELVYRWLDSWGANVFAAEDGAQGLARCQDLKALNNLPDVVLIDQYLP 1168 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + +G ++ KQ+ ++PV+ ++ +G+ ++ G Y++KP++ + +E++K Sbjct: 1169 DQTGCDLAKQMLGIEGCADLPVLILS-RIAEGELQKFCDAGARGYVAKPLTRAGLVESVK 1227 Query: 118 KYI 120 + Sbjct: 1228 VLL 1230 >gi|85860919|ref|YP_463121.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85724010|gb|ABC78953.1| response regulator receiver domain and a sigma factor phosphatase domain [Syntrophus aciditrophicus SB] Length = 402 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D+ L + +GY + +G + L + KPD+I++DI + I Sbjct: 1 MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G ++ + IK DS ++IPVI ++A + D+ + G YI+KP M I+ Sbjct: 61 GYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIEN 118 >gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED + D +E GY L +G+EALEL + + D+I++DI + ++ Sbjct: 1 MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I++ + +I +TA + + D+ + G + YI+KP SL + + I + Sbjct: 61 GLSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALL 118 Query: 121 GEA 123 A Sbjct: 119 KRA 121 >gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] Length = 237 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL+L Q+ +++I+DI + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 224 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+ + D ++ Y +G + +L D+I++D+ L ++ G+ Sbjct: 2 RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ IPV+ +TA D+ G + Y+ KP L I+ + Sbjct: 62 LCQRLRKSG--YAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118 >gi|254414953|ref|ZP_05028716.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178100|gb|EDX73101.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1317 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D N+KL D + +G+ ++G + L+L + PD+I++D+ + ++ G E Sbjct: 10 ILVIDDTPENLKLVSDFLRDAGFEVRIAKSGEQGLKLLEKLNPDLILLDVMMPDMDGFEA 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMK---GDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + ++IPVI +TA + + G YISKPI L + +K ++ Sbjct: 70 CRHLKAWEKTKDIPVIFMTAAVDTSNCEAKVKGLSLGAVDYISKPIQLDEVLARVKIHL 128 >gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 260 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L +E SG+ + +G++ LA Q+ PD+I++D+ L + GL + Sbjct: 5 ILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKGQALALQYIPDLIVLDLMLPRVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D +IP++ +TA A D+ G + Y++KP L + +K + + Sbjct: 65 CQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALLRRS 123 >gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis biprosthecum C19] Length = 747 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN +N+ L D +E GY + G EALE +PD++++D+ + +I G E Sbjct: 12 TILVVDDNPVNLGLVADHLELRGYQVVVALGGNEALERVAFARPDLVLLDVMMPDIDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K ++ ++IPVI +TA + G Y+SKP + + ++ ++ Sbjct: 72 TCRRLKAQADYKDIPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHL 128 >gi|294775873|ref|ZP_06741372.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294450242|gb|EFG18743.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1344 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208 >gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 623 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 74/117 (63%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+DN N+ +F + G +G EA+ L+R +PDVI+MD+Q+ + GLE Sbjct: 495 RVLLVDDNPGNLDMFATYLRIRGCDVRTAGSGAEAIALSRMPRPDVILMDVQMPGMDGLE 554 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++++ D L+ +P+IA+TA AM GD E+ + G + Y++KP+ L T+ +++ Sbjct: 555 TTRRLRSDPALRAVPIIALTALAMPGDREQCLEAGMDDYLTKPLGLKELHATVAQWV 611 >gi|237708643|ref|ZP_04539124.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229457343|gb|EEO63064.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1344 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208 >gi|212691763|ref|ZP_03299891.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855] gi|212665664|gb|EEB26236.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855] Length = 1344 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208 >gi|239827082|ref|YP_002949706.1| response regulator receiver protein [Geobacillus sp. WCH70] gi|239807375|gb|ACS24440.1| response regulator receiver protein [Geobacillus sp. WCH70] Length = 166 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + + L + GY ++ +G+ A++ +K D++++DI + E+ G Sbjct: 1 MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+E ++P+I VTA D + G + YI+KP + + I+ + Sbjct: 61 WETCQRIRE---FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|150003100|ref|YP_001297844.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931524|gb|ABR38222.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1340 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1090 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1148 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1149 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1204 >gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum EA 2018] Length = 233 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + L + G+ ++ NG+EALE+ + + ++++DI + ++ G Sbjct: 3 SRTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+ED + P+I ++A D+ G + YISKP + + +K I Sbjct: 63 ITTCMKIRED---KNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I++D+E + + R + GY L NG E L +PD++++D+ + ++ Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++E +PV+ +TA + + G + Y+ KP +L + ++ + Sbjct: 61 GFEVCRRMREGGST--VPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|299148439|ref|ZP_07041501.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298513200|gb|EFI37087.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1446 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE + ++ + Y + NG E L+ A PD+II D+ + + GLE+ Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QIKE++ + IP+I ++A A D + G + YI+KP S + + + + Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 >gi|293370405|ref|ZP_06616959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292634553|gb|EFF53088.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1417 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE + ++ + Y + NG E L+ A PD+II D+ + + GLE+ Sbjct: 1160 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1218 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QIKE++ + IP+I ++A A D + G + YI+KP S + + + + Sbjct: 1219 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1276 >gi|260171744|ref|ZP_05758156.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315920056|ref|ZP_07916296.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693931|gb|EFS30766.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1446 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE + ++ + Y + NG E L+ A PD+II D+ + + GLE+ Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QIKE++ + IP+I ++A A D + G + YI+KP S + + + + Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 >gi|237721203|ref|ZP_04551684.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448999|gb|EEO54790.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1446 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE + ++ + Y + NG E L+ A PD+II D+ + + GLE+ Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QIKE++ + IP+I ++A A D + G + YI+KP S + + + + Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 >gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 236 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 70/124 (56%), Gaps = 5/124 (4%) Query: 1 ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+ K V+IV+D + L +++ GY+ ++ NG EAL + R+ D++I+D+ + + Sbjct: 1 MMGNKTVLIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G++ +I+E+ +E+P+I ++A + D+ G + YI+KP + + +K Sbjct: 61 LNGIDTCLKIREE---REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKS 117 Query: 119 YIGE 122 + Sbjct: 118 QLRR 121 >gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 234 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L ++ +E +I +G+ ALEL ++ +PD+II+D+ L ++ GLE+ Sbjct: 3 ILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLPKLDGLEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I++ S ++ ++ +TA D G + Y+ KP S + ++ + + Sbjct: 63 CTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRS 121 >gi|160886917|ref|ZP_02067920.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483] gi|156107328|gb|EDO09073.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483] Length = 1446 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE + ++ + Y + NG E L+ A PD+II D+ + + GLE+ Sbjct: 1189 ILVVEDNEELKAFLKSIL-SENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QIKE++ + IP+I ++A A D + G + YI+KP S + + + + Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305 >gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 229 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + + GY +NG+EA+ A++ P +II+D+ + Sbjct: 1 MKKKDIKILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I+ LQ + +TA + G + I+KPI + + +K Sbjct: 61 EMDGIEACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|317479680|ref|ZP_07938804.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316904181|gb|EFV26011.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 885 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE ++L L++ Y NG EA+ + D+I+ D+ + + G+E Sbjct: 633 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNEDIDLIVSDVMMPVMDGIE 691 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K EL IPVI +TA + D + G +A+ISKP +L++ I+ + Sbjct: 692 FCRYVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLL 748 >gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37] gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37] Length = 241 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++++D++ +L + + + + + +G+E + H+PD+II+DI L G Sbjct: 5 KQVLVIDDDQAIRELLAEYLSKNNFDVITAEDGLEMDKQRLIHQPDLIILDIMLPGDDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ +P+I +TA + + D + G + YI+KP S + IK + Sbjct: 65 ILCQRIRQ---TSHVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLRR 121 >gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I++D + +K + +E GY +G E L A D+II+DI L +I+ Sbjct: 1 MAKKILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIMLPKIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++E S +P+I +TA D+ + G + Y++KP ++ +K Sbjct: 61 GLEVCRQVREQS---SVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D L + +E + Y +G A +LA Q + D I++D+ L + G Sbjct: 1 MTKILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K +++D PVI VTA + D + G + YI+KP S + +K + Sbjct: 61 MTVLKTLRQDKI--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1610 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ ++E GY NG EA+ + + +I+MD Q+ E+ G E Sbjct: 1482 RLLLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEAVAAHERSRYPLILMDCQMPEVDGFE 1541 Query: 64 ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I++ P++A+TA AM+GD ER G + YI+KP+ + ++G Sbjct: 1542 ATALIRKMEGRSAHTPIVAMTANAMQGDRERCLAAGMDDYIAKPVRPKELQAILDTWLGT 1601 Query: 123 A 123 A Sbjct: 1602 A 1602 Score = 100 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 +++++V+ + + R + + G ++G EA+ELAR Q+ D+ ++++ L Sbjct: 1327 RRILLVDHCDTVRQAMRQELTSHGMNCTVAQSGPEAVELARTAAASQNPFDLALIELHLS 1386 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 ++ G E +K+ I +I +T +GD + R G +AY++KP+ + Sbjct: 1387 DMDGFETAALLKQGPATAGIRLIILTTVGRRGDGQTARSIGIDAYLTKPLRQAQ 1440 >gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] Length = 236 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VED + +E Y +G EALE +H D++I+D+ L + G Sbjct: 5 TRRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++S ++P+I +TA D + G + Y+ KP S + + + Sbjct: 65 ERVCRAIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|77460200|ref|YP_349707.1| histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384203|gb|ABA75716.1| histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 778 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + ++ G + +G+EAL+ + D+++MD + + G E Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGVEALDQLEHDEFDLVLMDCNMPVMDGYE 715 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++QI++ +P++A+TA AM + ER R G Y++KP + ++I Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREELAALLDQWI 772 >gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 232 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K ++V+D +L +K + +E Y +G EAL++A++ + D++++D+ L E+ Sbjct: 1 MMNKALVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+E E+P+I +TA D+ + G + YI+KP ++ IK I Sbjct: 61 GMEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAII 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 234 Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+I+ED+ +L RD +E +G++ NG + L+ A + + D+I++D+ L I G Sbjct: 1 MKKVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + ++ PV+ V+A D+ R G + YI+KP S S + +K +IG Sbjct: 61 FEVLRKVRAE---KDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIG 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+ +L + Y +G EAL + + +P ++++D+ L + G Sbjct: 5 QRILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ ++P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREMRS---ASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 237 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + + GY + +G EAL+ + +PD++++DI L + Sbjct: 1 MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIMLPKRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ + P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] Length = 233 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+E +L + + NG +AL ++P++I++D+ L I G Sbjct: 5 QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S +P+I ++A D+ + G + YI KP + ++ + Sbjct: 65 QVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRR 121 >gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 248 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D ++ + GY + +G EAL+L R +PD++++D+ + ++ G Sbjct: 10 TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 237 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ K +++V+D + + + + GY + +G EAL+ + +PD++++DI L + Sbjct: 1 MMDKTILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIMLPKR 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ +++++ + P+I +TA + D+ + G + Y++KP S + +K Sbjct: 61 DGMEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKAN 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] Length = 234 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L ++ + Y + NG++A++ ++ + D +IMD+ L ++ Sbjct: 1 MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E TKQI++ +E +IP+I +TA + + D+ + G + Y++KP S + IK + Sbjct: 61 GVEATKQIRKFNE--QIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D+ ++ ++ET GY +G ALE +PD++++D+ L + Sbjct: 1 MTAKVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI I++ S ++P++ +TA + D + G + Y+ KP + +K + Sbjct: 61 GIEICSLIRQKS---DVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 256 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 23 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 83 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139 Query: 122 E 122 Sbjct: 140 R 140 >gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+ + ED+ L + +E GY +G +ALE + D++I+DI + ++G Sbjct: 1 MFKIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +Q++ S + +P++ +TA + D+ K G + Y++KP + I+ + Sbjct: 61 IELCRQLR--SSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6] gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae TIGR4] gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39] gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54] gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397] gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457] gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458] gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae] gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6] gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39] gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54] gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV104] gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV200] gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458] gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457] gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397] gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375] gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545] gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301] gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570] gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317] gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901] Length = 235 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E +KL + G+ NG +AL LA D I++DI L ++ Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED K ++ GY +G L AR+ +PD++I+D L +S Sbjct: 1 MTHHILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++++ + ++P+I +TA D G + Y+ KP SL + ++ ++ Sbjct: 61 GLEICRRLRSTGD--KVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 234 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D ++ R ++ +G ++ R+G EAL +PD+I++D+ + E Sbjct: 1 MAHRILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVGMPEFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++I++ ++P++ ++A + D + G + Y++KP S + + + Sbjct: 61 GLDVCREIRK---GSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] Length = 233 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+E +L + + NG +AL ++P++I++D+ L I G Sbjct: 5 QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S +P+I ++A D+ + G + YI KP + ++ + Sbjct: 65 QVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRR 121 >gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1079 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 4/124 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IVEDN N + R +++ G + NG EAL++ + D+++MD ++ E+ G Sbjct: 821 RILIVEDNPTNQMVARAVLKKLGLTNSTVANNGREALDILARENFDLVLMDCRMPEMDGF 880 Query: 63 EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T++I+E + ++P++A+TA AMKGD E+ + G Y+SKP+ E I + Sbjct: 881 EATRRIREGKNSVQNPQVPIVAMTAHAMKGDREKCIQAGMSDYLSKPVQPQELEEIINRQ 940 Query: 120 IGEA 123 + A Sbjct: 941 LRPA 944 >gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis CH188] gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis CH188] gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF] Length = 236 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L +E GY + +G ELA ++ D II+D+ L + G Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEITK ++ + + P++ +TA + D+ + G + Y++KP S + +K Sbjct: 61 LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|307152260|ref|YP_003887644.1| AraC family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982488|gb|ADN14369.1| two component transcriptional regulator, AraC family [Cyanothece sp. PCC 7822] Length = 265 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 72/121 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED++LN L ++ +E+ G+ + NG++ L+ ARQH PD+I+ DI + E+ G Sbjct: 1 MTRILLIEDDDLNCTLLQECLESEGFHIISAENGLQGLQQARQHLPDLILCDIMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + Q+++D IP I +TA K ++ R + G + Y++KP++ + ++ + Sbjct: 61 YSVLLQLRQDPITAFIPFIFLTAKTTKAEQRRGMELGADDYLTKPLTAEEVIAAVEARLE 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 245 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D + + +E SG+ + N +AL+L +P +II DI + + G Sbjct: 16 ARILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTTQPQLIISDIMMPGMDGY 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q+++ +PV+ +TA M D + + G +AY+ KP + + I Sbjct: 76 QFLAQVRKLDPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 135 Query: 123 A 123 + Sbjct: 136 S 136 >gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ +++ +EIP+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|298493029|ref|YP_003723206.1| response regulator receiver protein ['Nostoc azollae' 0708] gi|298234947|gb|ADI66083.1| response regulator receiver protein ['Nostoc azollae' 0708] Length = 121 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED+ ++ DL++ SG +G+EALE + PD++++DI + ++G Sbjct: 1 MSTVLIVEDSIAQREMITDLLKASGLTVTHAGDGVEALEAIQSTPPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q +PV+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YELCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120 >gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D +L +K R +E G +G EAL+L R++K ++I++D+ L ++ Sbjct: 1 MSRKVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +Q++E ++P++ +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GFQVCQQVRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|75908368|ref|YP_322664.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702093|gb|ABA21769.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 407 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+K+ D++ +G+ +NG+ AL ++ P++I++D+ + + G E Sbjct: 9 VLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFET 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + + ++IPVI +TA + ++ + + G YI+KPI + I ++ Sbjct: 69 CRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHL 124 >gi|17231256|ref|NP_487804.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132898|dbj|BAB75463.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 369 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D N+ L + ++E+ GY +G+ AL+ Q PD+I++D+ + + G E Sbjct: 11 RILAVDDTRDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ + L IP++ +TAF + G + +I KP + ++ + Sbjct: 71 VTRRIRNNPALSYIPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLR 127 >gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 236 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+ +L + + + +G EAL + + KP+++++D+ L + G Sbjct: 5 QRILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 SVCREMRAQSP---VPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] Length = 233 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D+E +L + + + +G AL +KP++I++D+ L I Sbjct: 1 MNKQKILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ ++I+ S P+I ++A D+ + G + YI KP + +K Sbjct: 61 DGYQVCREIRTRS---NTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis] gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus faecalis 62] Length = 236 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D + L +E GY + +G ELA ++ D II+D+ L + G Sbjct: 1 MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEITK ++ + + P++ +TA + D+ + G + Y++KP S + +K Sbjct: 61 LEITKALRREKI--DTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+ +V+D++ ++ +E G+ Q +G AL+ ++ P ++I+DI L I G+ Sbjct: 5 RKIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ ++P+I +TA D+ + G + YI KP + +K + Sbjct: 65 ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121 >gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|126658533|ref|ZP_01729680.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126620120|gb|EAZ90842.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 416 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D N+K+ + +G NG AL+ P++I++D+ + EI G Sbjct: 8 KHILIVDDKPTNLKVLATTLTEAGLDIAVATNGKMALQQVANDPPELILLDVLMPEIDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E KQ+K + E ++IP+I +TA + D+ R G YI+KP + I ++ Sbjct: 68 ETCKQLKANPETKDIPIIFMTALSDTIDKVRGLSLGAVDYITKPFETEEVIARINTHL 125 >gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 233 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED ++ + G+ + +G ALEL R +PD+I++D+ + GLEI Sbjct: 6 ILIVEDEPRLAEVLERYLRREGFRTERATDGRRALELWRATRPDLILLDLMVPGPDGLEI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+ +++ ++P+I VTA A + D + G + Y++KP S + +K + A Sbjct: 66 TRTLRK---TSDVPIIMVTARAEETDRLVGLELGADDYVTKPFSPREVVARVKAVLRRA 121 >gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 239 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + + +E GY + +G+EA +LA +PD+I++D+ L Sbjct: 1 MQGKILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++++ E P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMDVCREVRAKLET---PIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 230 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D ++L ++ GY NG +A+ AR+ PD+II+D+ + ++ G+ Sbjct: 6 QKILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++ E + ++ +TA + E G + YI KPI + I + Sbjct: 66 EACRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILRR 125 >gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + +++VED +L R +E G+ L+ +G + LELAR+H P +II+D+ L + Sbjct: 1 MSAQHILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPAL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+++++ +E IPV+ +TA + D G + Y+ KP S+ M IK Sbjct: 61 DGFEVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAI 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D +L +K R + G +G EALE+ + + D++++D+ L +I Sbjct: 1 MARKILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + +Q++E +P+I +TA D+ + G + YI+KP ++ +K Sbjct: 61 GIAVCQQVRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIF 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB [Phaeobacter gallaeciensis 2.10] gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB [Phaeobacter gallaeciensis 2.10] gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ +E G+ L+ +G EAL + + PD+I++D + +SG+E Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVLRAEHGEEALLIVEEDMPDIIVLDWMMPNLSGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K +E + IP+I ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 67 VCRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 >gi|119511740|ref|ZP_01630843.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463577|gb|EAW44511.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 412 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ ++ L+ GY ++ +G AL + +Q +PD+I++D+ + + G E Sbjct: 95 TILVVDDHTMSRISAAALLSMEGYEVIEAESGHTALLMVKQKQPDLILLDVMMPIMDGFE 154 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K+D + IP+I +TA + R + G + ++SKP +K + + Sbjct: 155 VCQRLKQDEHTRLIPIIFITALNDRRSRIRGIEVGADDFLSKPFDNVELTARVKSLVRQ 213 >gi|119484770|ref|ZP_01619252.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106] gi|119457588|gb|EAW38712.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106] Length = 455 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 69/116 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L +L+++ GY L +G+EAL+LA+ PD++++D+ + E+ G E+ Sbjct: 8 ILIVDDEPANLILLEELLKSEGYEILLAASGIEALQLAKTTSPDLVLLDVMMPEMDGFEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++D +L+ PVI +T+ + + + + + YI+KP + + + + + Sbjct: 68 CDSLRKDEQLKVTPVIFLTSLDDEQSQIKGLELMGDDYITKPFNSRLLLAKVSSLL 123 >gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419] gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase [Sinorhizobium medicae WSM419] Length = 455 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L +G AL + Q D++++DI + + Sbjct: 1 MTARILVVDDVPANVKLLEARLVAEYFEVLTAADGHAALAICEQTSVDLVLLDIMMPHMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K S IPV+ +TA D R K G + +++KP++ M +K + Sbjct: 61 GFEVCERLKASSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + + + AL A ++ D++I++ + L + Sbjct: 156 VLLVDGRASSQERLTRALRPI-ADVAVLSDAQAALFEAAENSFDLVIVNANFDDYDPLRL 214 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + IP++ VT R + G YI +P+ + + I Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDEMIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272 >gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium 4_1_37FAA] Length = 241 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G EAL + P+++++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S + P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRAKS---DTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 1122 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D +N ++ + + Y + NG EAL PD+I++D+ + +++G Sbjct: 712 KVLIVDDEPINRQVLINNLSLYNYAITEASNGQEALTAMENGFIPDLILLDLMMPQMTGY 771 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I+ E+P++ +TA D + G Y+SKPI + IK +I Sbjct: 772 EVCQKIRARFPTYELPIVMLTAKNQVADIVEGFESGANDYLSKPIQKQEMLARIKTHI 829 >gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] Length = 239 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VED + +E Y +G +AL+ +H D++++D+ L + G Sbjct: 6 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++S ++P+I +TA D + G + Y+ KP S + ++ + Sbjct: 66 ERVCRVIRDNS---DVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|262403061|ref|ZP_06079621.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586] gi|262350560|gb|EEY99693.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586] Length = 368 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+DN N L L++ Y L +G +AL + + KPD++++DI + E+ G E Sbjct: 6 TILIVDDNPENRALLAGLLKPH-YRLLVAVSGAQALAICHKQKPDLVLLDIMMPEMDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D ELQ+IPVI +TA + DE+ G YI KPIS I + + ++ Sbjct: 65 VCQRMRADPELQDIPVIFLTAKSQIEDEQHGFDVGAVDYILKPISPPILLARTRTHLR 122 >gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] Length = 233 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ +DN ++ R L+ GY ++ ++G E L+L D+I++DI + ++ Sbjct: 1 MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMN 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++E +P++ +TA + D+ G + Y++KP S S +K + Sbjct: 60 GYQTCLKLRE---TSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 1014 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N ++ + ++E G +G EAL D++ MD Q+ + G Sbjct: 746 ARVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYSHSPFDLLFMDCQMPNMDGY 805 Query: 63 EITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+ I+ D + P+IA+TA + GD ER K G + Y+ KP ++ + ++ Sbjct: 806 EATRAIRADEKQHHKTTCPIIAMTAHTLPGDRERCLKAGMDDYLGKPFTMRQVRTLLNRW 865 Query: 120 I 120 + Sbjct: 866 L 866 Score = 67.8 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 48/110 (43%), Gaps = 4/110 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+ + L + + + G A +G +AL + + +I++ + L ++ G E+ Sbjct: 607 LIVDPHPLTRRSVQQQLREWGIKAKTADHGKKALAMLQAQNFQIILVALTLPDMPGRELI 666 Query: 66 KQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 + + ++ + I + +T + +Y++KPI S + Sbjct: 667 QHCCDVAQTVPKHIITLGLTGQKLPPCRIS--DATTVSYLTKPIRPSKLL 714 >gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D ++ + GY + +G EAL+L + + PD++++D+ + ++ G Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++DS ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola F0402] Length = 228 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED+E R +E GY L +G ALEL PD++++DI L +++G Sbjct: 1 MNKVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I++ +PVI +TA D+ G + Y++KP + + ++ I Sbjct: 61 LEVLRRIRK---TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] Length = 234 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E + ++ GY + +G +A+ELA PD+I++D+ L + G+E Sbjct: 5 KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKKDGME 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP+I +TA + D+ + G + Y++KP S M +K + Sbjct: 65 VCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 >gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D++ L + +E GY ++ NG EAL L ++ D+II+D+ + + Sbjct: 1 MKTNILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVMMPVLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +I+ED +P+I ++A + + G + YI+KP + +K + Sbjct: 61 GISACLKIRED---YTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++++D+ +L R +E G+ L NG++A+E + P+++++DI L G + Sbjct: 6 KVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIMLPGADGWQ 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + IP+I ++A D+ + G + YI KP + +K + Sbjct: 66 VCREIRQ---VSNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRR 121 >gi|312131620|ref|YP_003998960.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311908166|gb|ADQ18607.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1299 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDNE D + + + RNG EA E + PD+I+ DI + +SGLE Sbjct: 1051 KILVVEDNEDFRFYLLDNLREE-FALEEARNGEEAWEKVLSYHPDLIVSDINMPGMSGLE 1109 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I+ D + IPVI +TA + + G YI KP ++ + + ++ + Sbjct: 1110 LCRKIRRDPRTKHIPVILLTAISSDSAQIEGLDSGASDYIIKPFNVELLLTKLRTQL 1166 >gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 601 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D +N++L ++ GY Q NG AL + P +I++DI + +I G E+ Sbjct: 13 ILIVDDTPMNLRLLSTMLSDQGYEVRQAINGKMALTAVQTCPPSLILLDIMMPDIDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K D + +IP+I ++A D+ + K G YI+KP + +K + Sbjct: 73 CSFLKNDPQTADIPIIFLSALDDVLDKVKAFKVGGVDYITKPFEFEEILARVKNQL 128 >gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium sp. M14] Length = 230 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KVMIVED E L R +E GY+ +G EA + ++ PD++I+D L +S Sbjct: 1 MSPKVMIVEDEEALSVLLRYNLEAEGYLVETIGHGEEADIVLQESVPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ + +PVI +TA + + R G + Y+ KP S M ++ + Sbjct: 61 GIELCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++I+ED + + ++ GY +G E L+ + PD+I++DI L I+G Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI ++I++ S +P+I VTA D G + Y++KP ++ + I+ + Sbjct: 63 IEICRKIRQHS---NVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119 Query: 122 EA 123 ++ Sbjct: 120 KS 121 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + R + +GY +G++ALE+ + +P+++I+D+ + + GLE Sbjct: 2 KIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRTLRSAGDDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119 >gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] Length = 237 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + ++ GY + +G EALE+ PD++++D L EI G Sbjct: 1 MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ +S PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 61 TEVLRQIRSNS---STPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium] Length = 228 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D E +++ + + Y + +G ALE ++ PD++++D+ L + Sbjct: 1 MSMKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++I+E + +P+I +TA + + D K G + Y+ KP S + I+ + Sbjct: 61 GLTVCRKIRE---VSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0205] Length = 243 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D + +E G++ +G + A++ PDV+I D+ + + G Sbjct: 17 ARLLLVDDEPGLRTAVQAYLEDEGFVVTTAVDGEDGWAKAQELLPDVVISDVMMPRLDGY 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ED L PVI +TA M D + GC+ YI KP + + + Sbjct: 77 GLLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDELVARVHNVVKR 136 >gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IV+D++ +L +++ Y + +G+EAL+L +++ D++I+DI + ++ Sbjct: 1 MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE I++D +P+I +TA + D R G + YISKP S + +K + Sbjct: 61 GLETLIHIRKDF---NMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + GY + NG+EA++LA++H P +II+D+ + Sbjct: 1 MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I+ +S+L + + TA + G + YI+KPI + + +K Sbjct: 61 EMDGIEACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] Length = 237 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL L Q+ +++I+D + +I Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + GY + NG EAL+ R + ++I+MDI + ++ Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I++ L IP+I +TA + D+ + GC+ YI+KP L + + Sbjct: 61 GFEAIKRIRK---LTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712] Length = 269 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ ++ +E +G +G EAL A + D+I++D+ L + GL Sbjct: 11 ARILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLMLPGLDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++++ +PVI +TA + D + G + Y++KP S + ++ + Sbjct: 71 EVCRRLRATGP---VPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVL 125 >gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVED + + + +E GY +G +AL+ + PD++++D+ L ++ Sbjct: 1 MEKKILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+E +P++ +TA + D+ + G + YI+KP + + + Sbjct: 61 GFQVCRKIRESF---SMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|116749733|ref|YP_846420.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] gi|116698797|gb|ABK17985.1| response regulator receiver protein [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ +++ GY +G +AL++ D+I++D+ + E+ G E+ Sbjct: 11 ILIVDDISKNIQVLGNILRRDGYSLSFATSGTQALDMVFADDYDLILLDVMMPEMDGFEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E + Q IP+I +TA + D + + G Y++KP + + + ++ Sbjct: 71 CRKIRELPDGQAIPIIFLTAKTDEEDIVKGFQAGGTDYVTKPFNSEELLARVHAHL 126 >gi|153869319|ref|ZP_01998959.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] gi|152074149|gb|EDN71035.1| sensory box/GGDEF family protein [Beggiatoa sp. PS] Length = 576 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D ++ L+ GY + NG EAL+ A + PD++++D+ + + G E Sbjct: 6 TILIVDDETVSRYTVEVLLSAEGYNLVFAENGEEALKKAAESIPDLMLLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ + L E+P++ VTA + R + G + ++SKP + ++ Sbjct: 66 VCQRLRTNPRLAELPIVMVTALDDRDSRLRGIEAGADDFMSKPFDRAELRARVRTITR 123 >gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D ++ + GY + R+G EAL+L + ++PD++++D+ + ++ G Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++DS ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI] gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED E L + +E G+ ++ G EA + PD+II+D L +S Sbjct: 1 MNAKILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ + IP++ +TA + D R G + Y+ KP S+ + +K + Sbjct: 61 GIELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAIL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K++++V+D L KL D ++ GY+ ++ +G +A+ L + D+II+D+ L E G Sbjct: 4 KRILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPEYDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I++ S+ +P+I +TA + DE G + YISKP S +I + + + Sbjct: 64 FTVCREIRKKSK---VPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 228 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D +L +K R +E G +G EAL LA+ + D+I++D+ L +++ Sbjct: 1 MGNKILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLPKLT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +Q++E ++P+I +TA D+ + G + Y++KP ++ IK I Sbjct: 61 GFEVCQQVRE---FSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAII 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 228 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K ++++V+D +++ + GY +NG E + A++ +P +II+D+ + Sbjct: 1 MKKKDIRILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I+ L+E + +TA + + G + YI+KPI +F+ +K Sbjct: 61 EMDGIEACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550] gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550] Length = 242 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135 >gi|172038635|ref|YP_001805136.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700089|gb|ACB53070.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 377 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY + NG AL Q PD+I++DI + ++G E+ Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVAPDLILLDINMPSMNGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K+D + ++IP+I ++A D+ + + G YI+KP + I+ + Sbjct: 68 CQQLKDDPDTKDIPIIFISALDDVLDKVKAFELGGVDYITKPFQAEEVIARIENQL 123 >gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L + GY ++ NG +AL KPD+ ++D+ + ++ G Sbjct: 1 MPKILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++E ++P++ +TA + + + G + Y+ KP + +K + Sbjct: 61 WALCSALRESF---DMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++ + GY +G+EALE+ + PD+I++D+ + + G + Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++ +P+I +TA + GD + G + Y+ KP S ++ I Sbjct: 75 CRAIRK---TSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRR 129 >gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 238 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED +L + +G+ +G A P+VI++D L SGL Sbjct: 13 RVLIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDAVLPEVILLDWMLPGQSGLS 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + DS + IP++ +TA + D+ G + YI+KP S + I+ + Sbjct: 73 LARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRR 131 >gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435] gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus haemolyticus JCSC1435] Length = 241 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + ++ + + NG EA LA ++ I++D+ L E+ Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|190565563|ref|ZP_03018483.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] gi|190563590|gb|EDV17555.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I] Length = 511 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++V+D+ + +E +GY +G AL PD++++D+ L + Sbjct: 1 MTQRVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ IP+I +TA + D + G + Y+SKP S + + + Sbjct: 61 GLEVCRRLRAQPGG--IPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 260 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] Length = 236 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+++++ +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQNKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20] gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 226 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++E+ Y +G +AL+ + PD++++D+ L + Sbjct: 1 MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI + I+ +S ++P+I +TA D + G + Y++KP + + + Sbjct: 61 GVEICRLIRSES---DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ +++ +EIP+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516] gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516] Length = 233 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED + + + + G+ L+ +G + +ELA +KPDV ++DI L I Sbjct: 5 MSIKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGID 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++ ++ I +I +TA D+ + G + Y++KP + + IK + Sbjct: 65 GFEVCKILR--NKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVL 122 Query: 121 GEA 123 + Sbjct: 123 RRS 125 >gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 256 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 23 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 82 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 83 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 139 Query: 122 E 122 Sbjct: 140 R 140 >gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1] gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + + GY NG+EA+ A++ KP +IIMD+ + Sbjct: 1 MKKKDIKILLVDDEPDILEIVGYNLSSEGYNLTTASNGVEAIAKAKKIKPHLIIMDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I++DS L + +TA + G + YI+KPI + + +K Sbjct: 61 EMDGIEACENIRKDSSLANTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+MIV+D+ +L L++ G+ + R+G EALE + P + ++D+ + + G Sbjct: 1 MSKIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ +++PV+ +TA K + + + G + Y++KP + +K + Sbjct: 61 YELCRQLRQ--GYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + + G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 248 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EALEL PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRKILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P+I +TA + D + G + Y++KP S I + K+ I Sbjct: 61 GWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117 >gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D +L + + GY + T +G +A+++ H PD+II+D L + Sbjct: 1 MAKRVLVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETHAPDLIILDGMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++K D IP+I ++A + D+ + G + YI+KP S + + I Sbjct: 61 GNDICYRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATI 120 Query: 121 GEA 123 A Sbjct: 121 KRA 123 >gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae] Length = 230 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISG 61 + ++IV+D ++ +E +GY L+ N +A + KPD+I++D L SG Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPGGTSG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++K + +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 IELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVLR 123 Query: 122 EA 123 A Sbjct: 124 RA 125 >gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 226 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++ T GY ++G AL+ + PD++++D+ L + Sbjct: 1 MNPRILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI +I+E+S +P+I +TA + D + + G + Y+ KP + + ++ + Sbjct: 61 GIEICARIREESG---VPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRL 117 Query: 121 GEA 123 A Sbjct: 118 RPA 120 >gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P] gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P] Length = 232 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K K+++V+D +++ + GY NG EA++ A+++ P +I++DI + Sbjct: 1 MNKSEIKILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKNIPHLILLDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E ++I++ S L+ + + +TA + + G + YI+KPI + + +K Sbjct: 61 EMDGIEACEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 SLLRR 125 >gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G AL + D++++D+ L E+SG Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLMLPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +P+I VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 234 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21] gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V+I+ED + +L +E G+ A+ +G + LE A + PD+I++D+ L + G Sbjct: 1 MQTVLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLMLPGMLG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I++ IPVI +TA + D+ + G + Y+ KP S M +K + Sbjct: 61 TEVCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016] gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 227 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++V+D E L ++ G L NG EAL +++ D++++DI + + Sbjct: 1 MNKTVLMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKFKENHVDLVVLDIMMPLMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++++ + +P+I +TA D+ + G ++Y++KP+S I + IK + Sbjct: 61 GWTVCRELRK---ISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D L +K + +E GY L +G EALE A+ D+I++D+ L +I Sbjct: 1 MGYKILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ +QI+ +S+ P+I +TA + + G + Y++KP ++ IK + Sbjct: 61 GLQVCQQIRLNSQT---PIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|91772718|ref|YP_565410.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91711733|gb|ABE51660.1| PhoP response regulator receiver [Methanococcoides burtonii DSM 6242] Length = 170 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + +E GY ++ NG A + + PDVI++D+ + ++ G E Sbjct: 49 KVLIVDDEPDAVIATKRALEADGYNVIEANNGTMAFDALKSDIPDVILLDVMMPDMDGFE 108 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++KE+ + IPVI +TA D+ G + Y++KP +L IK + Sbjct: 109 VCRRLKEEPLYENIPVIMLTAKGEINDKVEGLDIGADDYMTKPFNLKELKARIKTVLRR 167 >gi|56479139|ref|YP_160728.1| CheY-like domain-containing protein [Aromatoleum aromaticum EbN1] gi|56315182|emb|CAI09827.1| CheY-like response regulator domain [Aromatoleum aromaticum EbN1] Length = 131 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 81/123 (65%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I ED+ +++L R L+ +GY L +G ALELAR+H PD+II D+Q+ + + Sbjct: 1 MAARILIAEDHPASLELLRYLLSANGYDILSAEDGEAALELARRHPPDLIICDLQMPKKN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + L IPV+AVTAF+M GD E++ G + Y+SKPI F+ I++Y+ Sbjct: 61 GYEVVRELKREPALAAIPVVAVTAFSMIGDREQVLAAGFDGYLSKPIEPEEFVALIEQYL 120 Query: 121 GEA 123 + Sbjct: 121 PPS 123 >gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D+ +L + L+ G+ + +G+EAL K D++I+D+ + + G Sbjct: 1 MNKILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++E ++P++ +TA + + + G + Y+ KP + +K + Sbjct: 61 WQLCRELREH---YDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++ + GY +G+EALE+ + PD+I++D+ + + G + Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++ +P+I +TA + GD + G + Y+ KP S ++ I Sbjct: 75 CRAIRK---TSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRR 129 >gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1426 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN L+ S Y +G+ ALE A +H+PD++I DI + + GL Sbjct: 648 RILLADDNPDMRDYVTRLLGES-YEVETVGDGVAALEAAWKHRPDLVISDIMMPRLDGLS 706 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K ++ DS L ++PVI ++A A + + G + Y+SKP S + ++ + Sbjct: 707 LLKALRSDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNL 763 Score = 95.6 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 15/127 (11%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEISG 61 V++VEDN + L+ GY + + +AL+L Q + +++ D+ + + G Sbjct: 1305 VLVVEDNAEVGEFSTQLLHDLGYETVLATSAEQALQLLDQDDAARFHLVLSDVVMPGMDG 1364 Query: 62 LEITKQIKEDSELQEIPVIAVT--AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + + ++I+ L +PV+ + A + D + + KP S+ + +++ Sbjct: 1365 VALGREIRR--RLPHLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRA 1417 Query: 120 I---GEA 123 + A Sbjct: 1418 LMDSRRA 1424 >gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 224 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+ + D ++ Y +G + +L D+I++D+ L ++ G+ Sbjct: 2 RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ IPV+ +TA D+ G + Y+ KP L I+ + Sbjct: 62 LCQRLRKSG--YAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118 >gi|153872512|ref|ZP_02001384.1| adenylate cyclase [Beggiatoa sp. PS] gi|152071021|gb|EDN68615.1| adenylate cyclase [Beggiatoa sp. PS] Length = 681 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 + K +++VED+ LN +L L+ + + +NG ALE+ ++ P +I++DI L Sbjct: 547 MPKSPSILLVEDSALNARLLSFLLTKNAFNVFVAKNGNSALEMVKKQHPHLILLDINLPG 606 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I+G EI K++K ++ Q+IPVI ++A+ D+ + + G YI+KP + I+ Sbjct: 607 INGFEICKRLKSNTHTQDIPVIFMSAYTDTLDKVKGFELGAVDYITKPFQQEEVLARIRT 666 Query: 119 YI 120 ++ Sbjct: 667 HL 668 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGLE 63 MIV+D +N ++ + + Y +Q +G EAL L + KPD+I++DI + +G + Sbjct: 1 MIVDDEPVNRQVLVNHLSLQNYKTIQATDGQEALNLVLEGEIKPDLILLDIMMPYKTGYD 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T++I++ E+P+I +TA D + G Y++KP+S + IK ++ Sbjct: 61 VTQKIRKKWPADELPIILLTAKNQVSDLVVGLEMGANDYLTKPVSKDELLARIKTHL 117 >gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + + G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 135 >gi|254411506|ref|ZP_05025283.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182007|gb|EDX76994.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 419 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 65/120 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D+ + ++L+E+ G+ L +G AL+ ++ +PD+II D + ++ G Sbjct: 1 MAKILAVDDDITVQIILQELLESEGHDVLLADDGEAALQKTQEFQPDLIICDWMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++IK D +L I +I +T D + G + ++SKPI S ++ + Sbjct: 61 LELCRRIKADPQLATIFLILITIREQVADRVQGLDSGADDFLSKPIEPSELQARVRSGLR 120 >gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D L ++ +GY +G E+ + +PD+I++D+ L ++ Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++++ S +P++ +TA D+ G + Y++KP S + I+ Sbjct: 61 GIQVCRELRKQSNA--VPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196] gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291] gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196] gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + + + ++ GY + +G+EAL + + + D++I+DI + + G Sbjct: 1 MAKILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +E + IP+I +TA + D+ + + G + YI+KP S + + + + Sbjct: 61 FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18] gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 457 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N KL + + L NG +ALE+ + D++++D+ + ++ Sbjct: 1 MSARILVVDDIPANAKLLEARLSAEYFDVLTASNGAQALEICSRAACDIVLLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ + N EAL A D++I+ + L+E GL Sbjct: 157 RILLVDDRPSSYERLAPVLAAE-HAVDVEPNPSEALFHAADGNYDLLIVSLGLEEFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A A R + G Y+ +P+ + + Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] Length = 228 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D E ++L R + GY G EAL A P++I++D+ L + Sbjct: 1 MAKEHILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLMLPGV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 GLE+ +++K+D + +P+I ++A + D + G Y++KP S + + Sbjct: 61 DGLEVCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLI 114 >gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ ED ++ +G+ + NG EA+ + DV+++D+ + E+ G Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E I++ E + +I +TA ++ D+ G + YI+KP S + I+ + Sbjct: 61 FEACAAIRDLDE--NVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] Length = 234 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EAL+ Q+ P++I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ +P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121 >gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V+IV+D E L +E +G+ L+ +G EAL L QH D +++D+ + + Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +I+E S ++P++ +TA + D+ + K G + YI KP S + ++ Sbjct: 61 DGFAVCARIREQS---DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1382 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN + + L+ Y +GM ALE R+H PD+++ D+ + +++G Sbjct: 629 ARIILADDNADMREYVKRLLNKL-YQVEAVGDGMAALEAIRRHPPDLVLTDVMMPQLNGF 687 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q++ + QE+P+I ++A A + + G + Y+ KP S + I+ + Sbjct: 688 ELLQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADDYLVKPFSARELLVRIEANL 745 >gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED ++ +E GY + +G L++AR+ +PD++++D+ L + Sbjct: 1 MSAKILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPMVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++ +S +P+I +TA + D + G + YI+KP S + IK + Sbjct: 61 GFTVCRTLRAES---SVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] Length = 237 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++++ED + ++ SGY A +G LEL +PD++++D+ L + Sbjct: 1 MSRAHILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLMLPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +++++ E ++ PVI VTA + + G + YI KP SL+ M ++ Sbjct: 61 EGWEVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQ 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase [Methylocella silvestris BL2] gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase [Methylocella silvestris BL2] Length = 469 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+DN N+KL + Y + NG +AL + + + D++++D+ + ++ Sbjct: 1 MTARVLVVDDNLPNVKLLEARLSAEYYEVVTASNGADALAICARGECDIVLLDVMMPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D+ IPV+ VTA D + G + +++KPI + ++ Sbjct: 61 GFEVCRRLKADTLTAHIPVVMVTALDQTSDRLMGLEAGADDFLTKPIDDVALIARVRSLA 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 95.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +++ ++ + + +EAL D++I+ + L+ GL Sbjct: 157 RVLVVDDRRSSVETIYGALKGL-HEVELEPDALEALVEGAAGGYDLLIVSLSLEAYDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIFMETIKKYI 120 + QI+ +E+P++A+ A D R G Y+ +PI + ++ + Sbjct: 216 LCSQIRSIEATRELPILAI---AEPEDRARTLRCLDLGVNDYLLRPIERHELVARVRTQL 272 Query: 121 GE 122 Sbjct: 273 RR 274 >gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 227 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D E + +D ++ Y +G+EA+E A+ + PD+I++D+ + + Sbjct: 1 MKEKILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN-PDLILLDVMMPGKN 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ ++ P+I +TA + + D G + YISKP SL I ++ Sbjct: 60 GYEVCREIR---DIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630] gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile] Length = 223 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + + + ++ GY + +G+EAL + + + D++I+DI + + G Sbjct: 1 MAKILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +E + IP+I +TA + D+ + + G + YI+KP S + + + + Sbjct: 61 FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193] gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193] Length = 224 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L R +E +G+ + +G EAL A + PD I++DI L E+ G E Sbjct: 2 KILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ SE +P++ +TA + D + G + Y++KP S + I+ + + Sbjct: 62 VCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRS 118 >gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 234 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B] gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B] Length = 239 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++M+++D ++L +E GY + + +ALE + + D+ ++DI L + G Sbjct: 4 RRIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLPGMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ + + PVI ++A + D+ + G + YI+KP S+ + IK Sbjct: 64 EFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123 >gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 260 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 1135 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQE 58 +K K++IV+D +N+++ + + Y Q NG++A RQ ++PD+I++DI + + Sbjct: 726 MKAFKILIVDDEPVNLQVLVNHLSLHNYKITQAVNGLDAFTKIRQGYRPDLILLDIMMPK 785 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E K+I+ E+PV+ +TA D G Y++KPIS + + IK Sbjct: 786 MTGYEFCKKIRNKYLPNELPVVLLTAKNQISDLVAGFAAGANDYLTKPISKNELLARIKT 845 Query: 119 YI 120 ++ Sbjct: 846 HL 847 >gi|300867146|ref|ZP_07111811.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300334847|emb|CBN56977.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 461 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + + + +GY +G AL+ + PD+I++D+ + I G E Sbjct: 45 ILIVDDTPTNLDVISEALSNAGYKVAFATSGERALQQVERRPPDLILLDVMMPGIDGFET 104 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + + +IPV+ +TA A ++ + K G Y++KP + +K ++ Sbjct: 105 CKRLKANEKTCDIPVMFMTALADVDNKVKGLKLGAVDYVTKPFQEQEVLARVKTHL 160 >gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 238 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E +L R +E Y + +G AL++A + I++DI + G+E Sbjct: 6 KILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E + PVI +TA + + + G + YI KP S + +K + + Sbjct: 66 VCQELHEK---KMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRS 122 >gi|255616226|ref|XP_002539738.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223502939|gb|EEF22645.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 185 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED +L I+ +G+ A++ + A L R+ PD+I++D L +SG+E Sbjct: 6 ILVVEDEPAIQELLALNIKQAGHHAIRATSVEHAQMLLRETMPDLILLDWMLPGMSGIEF 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K DS +E+P+I +TA + D+ R + G + Y++KP S IK + Sbjct: 66 ARRLKSDSLTKEVPIIMLTARGDEFDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 123 >gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 248 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D ++ + GY + +G EAL+L + + PD++++D+ + ++ G Sbjct: 10 TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++DS ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKDS---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|311694984|gb|ADP97857.1| signal transduction histidine kinase [marine bacterium HP15] Length = 775 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 68/116 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN++N + L++ G+ NG++A++ + D+++MD Q+ + G E Sbjct: 656 KILLVEDNQVNQMVAVSLLKKLGHRTDHAENGLKAIQALENNHYDLVLMDCQMPVMDGYE 715 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+++ E +E+P+IAVTA M+GD E G YI+KP I ++ Sbjct: 716 ATQRIRQNPEWKELPIIAVTANVMQGDREDCLASGMNDYITKPYKREELRTVIDRW 771 >gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 235 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + +GY + R+G EA+ +++DI + + G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135 >gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] Length = 227 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V+++ED ++ + GY NG + L + + PDVI++D L + Sbjct: 1 MTQPHVLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+EI +Q+K ++ + IP+I ++A + + D+ R + G + Y+ KP +++ M ++ Sbjct: 61 SGIEICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQ 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 268 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ +L +E +G+ + +G++ LA Q+ PD+I++D+ L + GL + Sbjct: 5 ILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA D+ G + Y++KP L +K + Sbjct: 65 CQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALLRR 122 >gi|75907784|ref|YP_322080.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701509|gb|ABA21185.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 369 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D + N+ L + ++E+ GY +G+ AL+ Q PD+I++D+ + + G E Sbjct: 11 RILAVDDTKDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ + L +P++ +TAF + G + +I KP + ++ + Sbjct: 71 VTRRIRNNPALSYVPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLR 127 >gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 249 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++ ED+ + GY +G+EAL A + PDV+++D+ + I Sbjct: 1 MTQTVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + ++ + + P++ +TA D G + Y+ KP + ++ + Sbjct: 61 GLQVCRVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 52/118 (44%), Positives = 78/118 (66%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N+ D + + G+ + RNG+EA++ A+QH PDVI+MDIQ+ E+ GLE Sbjct: 1704 ILLAEDNEANIITLTDYLHSKGFRVVLARNGIEAVQQAKQHTPDVILMDIQMPEMDGLES 1763 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+QI+ DS L +P+IAVTA AM GD E+ G Y++KPI L + I++Y+ Sbjct: 1764 TRQIRADSGLPRMPIIAVTALAMPGDREKCLAAGATEYMAKPIRLKKLVTLIEQYLHR 1821 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++VED++ + + G L G ++ +Q PDVII+DI L ISG E Sbjct: 1573 KALVVEDSDASANHIARYLGELGITVLIHPQGEGTIDTVQQFNPDVIILDILLPHISGWE 1632 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + Q+KE+S Q IPV+ ++ D + + G Y+ KP+S + + Sbjct: 1633 VLVQLKENSATQSIPVVV---VSVVDDPTQALELGAADYLLKPVSRPQLQSVLSQL 1685 >gi|300865288|ref|ZP_07110102.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300336761|emb|CBN55252.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 403 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN+ N+ + D + + L +G A+E +PD+I++D+ + I G E Sbjct: 11 ILIVDDNQTNLDVLFDFLRNCNFKVLVALDGESAIEQLEYVRPDLILLDVMMPGIDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K ++IPVI +TA + ++ R + G YI+KP + I+ ++ Sbjct: 71 CSRLKAIPATKDIPVIFMTALSDTVNKVRGFQSGAVDYITKPFQHEEVLSRIQTHL 126 >gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185] gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W] gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W] gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185] Length = 225 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus S110] gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus S110] Length = 230 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V+IVED +L + +G+ + + +G A PD+I++D L Sbjct: 1 MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ +Q ++D + IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 SGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family [Variovorax paradoxus EPS] gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus EPS] Length = 230 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V+IVED +L + +G+ + + +G A PD+I++D L Sbjct: 1 MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ +Q ++D + IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 SGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] Length = 229 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED + + + + G+ L+ +G + +ELA +KPDV ++DI L I Sbjct: 1 MSIKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++ ++ I +I +TA D+ + G + Y++KP + + IK + Sbjct: 61 GFEVCKILR--NKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 242 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+E ++ ++ G+ +G +ALE+ R KPD++++D+ L I Sbjct: 19 MKARILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLMLPGID 78 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S ++PV+ +TA A D R + G + Y+ KP + + ++ + Sbjct: 79 GIEVCRLIRAES---DVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARL 135 Query: 121 G 121 Sbjct: 136 R 136 >gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 233 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D L + +E +G+ +G LELA + +I++D+ L E+ Sbjct: 1 MADKVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K++++ P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCKRLRQQKV--NTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|124006367|ref|ZP_01691201.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla marina ATCC 23134] gi|123988024|gb|EAY27695.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla marina ATCC 23134] Length = 490 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D N+KL + + GY L +G A+E KPD+I++D+ + I G E Sbjct: 11 KILVVDDTPANIKLMVEHLSQEGYKTLVAEDGESAIEQVAFVKPDLILLDVMMPGIDGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++KED ++IP+I +TA + ++ + G Y++KPI + + ++ Sbjct: 71 TCHRLKEDDSTKDIPIIFMTALSDTENKVKAFSMGAVDYVTKPIQHKEVLSRVSAHL 127 >gi|77460594|ref|YP_350101.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384597|gb|ABA76110.1| putative two-component response regulator [Pseudomonas fluorescens Pf0-1] Length = 243 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + +G+ T +G + + D++I+D+ L + G Sbjct: 6 KSILLVDDDQEIRELLETYLTRAGFQVRATADGAGFRQALNEAPSDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ ++P+I +TA + + D + G + Y+ KP S IK + Sbjct: 66 SLCRWVRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EAL+ Q+ P++I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ +P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++VED L R +E GY G EAL +P ++++D++L + Sbjct: 1 MPRPILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +Q+++ ++PV+ +TA + R + G + Y+ KP + + I+ + Sbjct: 61 GVEVCRQVRQ--RWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 260 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 231 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ +++ L+ + GY L +G+EALE + +PD++++DI + +S Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I+E S ++PVI +TA + D+ + G + YI+KP + IK + Sbjct: 61 GFEVLKKIRERS---DVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117 >gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 224 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED R + GY +G +AL++AR+ PD++++D+ L I G Sbjct: 1 MSTILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ ++P+I +TA D + G + Y+ KP + + I+ + Sbjct: 61 LEVARRLRA---ASDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08] Length = 229 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED + +++ GY NG EAL+L + PD+I++D+ L ++S Sbjct: 1 MKKYVLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI + ++ + + P++ VTA + D + G + YI KP S+ FM + + Sbjct: 61 GLEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAML 120 Query: 121 GEA 123 + Sbjct: 121 KRS 123 >gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + GY + NG EAL + K D+I+MDI + +I Sbjct: 1 MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIMMPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K I++ P+I +TA + D+ + GC+ YI+KP L + + Sbjct: 61 GFEAIKVIRK---FTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630] gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile CD196] gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile R20291] gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08] gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07] gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile] gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile CD196] gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile R20291] gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08] gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07] Length = 222 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ +L + + GY +G+E ++ +Q D++I+DI + + Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I++ S +P+I +TA +GD+ + C+ YI+KP S ++ ++ ++ + Sbjct: 61 GYGVCKMIRKSS---SVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355] Length = 249 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++D+ + + +G Sbjct: 18 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKNG 76 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 77 IDTLKELRQQYQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 133 Query: 122 EA 123 + Sbjct: 134 RS 135 >gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 234 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EAL+ Q+ P++I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ +P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121 >gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] Length = 234 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D +L +K R +E +G EA+ LA+Q + DV+++D+ L + G Sbjct: 1 MARILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E E+P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 YEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14] gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14] Length = 236 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E +KL + G+ NG +AL LA D I++DI L ++ Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|148654863|ref|YP_001275068.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] gi|148566973|gb|ABQ89118.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus sp. RS-1] Length = 331 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +DN+ + +E GY AL RNG EAL LA + +PD++++D+ + +I Sbjct: 1 MAAKILIADDNQAMREAIIRFVEAEGYTALAARNGREALALALEKQPDLVLLDVTMPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IP+ +T + G + +++KP + I+ + Sbjct: 61 GFEVCRRLKNDPRTALIPITMLTVLDSPDHRRYGIEAGADDFLTKPFDERLLRARIQSQL 120 Query: 121 G 121 Sbjct: 121 R 121 >gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 259 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ L +E SG+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L IK + + Sbjct: 65 CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 >gi|17232371|ref|NP_488919.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134016|dbj|BAB76578.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 407 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+K+ D++ +G+ +NG+ AL ++ P++I++D+ + + G E Sbjct: 9 VLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFET 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + + ++IPVI +TA + ++ + + G YI+KPI + I ++ Sbjct: 69 CRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHL 124 >gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+DN+ ++ L+E GY + +G A+ A+ D+II+D+ + ++ Sbjct: 1 MGSKILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAKDM--DLIILDVMMPKMD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QI+E + P++ +TA M D+ G + Y++KP S + + +K + Sbjct: 59 GFKACRQIRE---VSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALL 115 Query: 121 GE 122 Sbjct: 116 RR 117 >gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + R ++ +GY + +G++A+E+ P+++I+D+ + + GLE Sbjct: 2 KILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRTLRSEGWDR--PILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119 >gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 241 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + +G EA +LA + I++D+ L E+ Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218437504|ref|YP_002375833.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218170232|gb|ACK68965.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 373 Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ N+ L + ++E G + ++G+ AL+L ++ P +I++D+ + ++ G E Sbjct: 14 KILVVDDSPDNLFLIQTILEEQGLNVILAQDGIAALKLVKEKSPKLILLDVMMPKMDGFE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T+QI+ + + IP++ +TA+ + G + +I KP+ + + ++ + Sbjct: 74 VTRQIRSNPNIPYIPILLITAYDQPS-AVKGLDVGADDFIRKPVDVDELLARVRSLLR 130 >gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01] gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-03] gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-07] gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-22] gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-26] gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-32] gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-12] Length = 229 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 60/117 (51%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ +L +E GY +G ALE RQ +PD++++D L ISGLE+ Sbjct: 7 LVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWMLPGISGLEVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ + +P++ ++A + D R G + Y+ KP S+ +K + Sbjct: 67 RQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123 >gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 227 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+ +V+D++ ++ +E G+ Q +G AL+ + + P ++I+DI L I G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIMLPGIDGIA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ ++P+I +TA D+ + G + YI KP + +K + Sbjct: 66 LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121 >gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] Length = 237 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ NG EAL+L ++ +++I+DI + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 242 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + +GY + R+G EA+ +++DI + + G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135 >gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 263 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 4 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 64 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 239 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ +G EAL+LA +PD++++D+ L ++ G Sbjct: 10 ARLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++E + +PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 70 TVTRKLRE--RGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127 >gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+E K+ + +E G++ +G+ A E ++K D++++D+ L + G Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+E P+I +TA ++ + G + Y++KP + + I + Sbjct: 64 QVCQKIRE---TSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 >gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str. CNEVA-9066] gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055] gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str. Western North America USA6153] gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger B] gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str. Vollum] gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str. Australia 94] gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 250 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 18 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 78 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 134 >gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 254 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D + +E GY +G AL + +PD++++D+ + + GL Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA + GD G + Y++KP L + ++ + Sbjct: 76 CRRLRTADPT--LPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRR 131 >gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 233 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + + L + GY + NG+EA++ +Q + D+ I+DI L +I Sbjct: 1 MNKKILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQSQIDLAILDIMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E P+I +TA D+ G + YI+KP + + +K + Sbjct: 61 GFRLCQKIREKFYF---PIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + + + +E G+ + +G AL++ +I++D+ L +++G E Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +I+ + +P+I +TA A + ++ G + Y++KP S+ + ++ + A Sbjct: 66 VCNRIRA---VSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRA 122 >gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 230 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ ED ++ +GY ++ NG EAL+ Q D++++DI + E+ G Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +Q + E+ + +I +TA + D+ G + YI+KP S + + I+ + Sbjct: 61 FAVCEQARSKDEV--VGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB [Burkholderia rhizoxinica HKI 454] gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB [Burkholderia rhizoxinica HKI 454] Length = 256 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 24 MPSSILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQAQRLISDVLPDLVLLDWMLPGKS 83 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ ++++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 84 GVAFARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 143 Query: 121 GE 122 Sbjct: 144 RR 145 >gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 226 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 K+++V+D KL RD + G+ ++ +G EA++ + +II+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I++ ++P+I +TA + + DE + G + YI+KP S I + ++ + Sbjct: 65 QVCREIRQ---YSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 225 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. Ex25] Length = 1111 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 709 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y+SKP + I+ ++ Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 822 >gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + ++ GY +G+ L AR+ PD++I+D L IS Sbjct: 1 MTHHILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++++ ++P+I +TA D G + Y+ KP S+ + ++ ++ Sbjct: 61 GPEICRRLRTTGN--QVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K ++V+D +L +K + +E GY +G EAL++A++ + D++++D+ L E+ G Sbjct: 1 MNKALVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + I+E E+P+I +TA D+ + G + YI+KP ++ IK I Sbjct: 61 MEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|90408203|ref|ZP_01216371.1| elongation factor P [Psychromonas sp. CNPT3] gi|90310733|gb|EAS38850.1| elongation factor P [Psychromonas sp. CNPT3] Length = 241 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V++V+D++ +L + + + + + +G+E Q +PD+II+D+ L G Sbjct: 4 TKQVLVVDDDKDIRELLAEYLTKNNFSVITAGDGIEMDAHLAQTEPDLIILDVMLPGDDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I++ +P+I +TA + + D + G + YI+KP S + IK + Sbjct: 64 FILCQRIRQ---TSMVPIIMLTANSDELDRILGLEIGADDYIAKPFSPRELLARIKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 797 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++VEDN++N + + ++ GY NG +AL+L D+I+MD + + G Sbjct: 667 KHVLLVEDNQVNQLVAKTILRKLGYEVSIANNGQDALDLVGNDHYDIILMDCHMPVMDGY 726 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+++S+ +P+IAVTA M+GD+ER G Y++KP + + K++ Sbjct: 727 EATRLIRQNSKYDALPIIAVTANVMQGDKERCLSCGMNDYLTKPYEKKALTQMLAKWL 784 >gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1343 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN + + + S Y L NG EAL + ++ + D+I+ D+ + + GL++ Sbjct: 1099 ILIVEDNTDIRQYLCEELGNS-YHILTAENGEEALSIVKEQEIDLILTDVMMPVMDGLQL 1157 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 KQIK++ IP+I ++A ++ + G + YI KP S+++ + I+ Sbjct: 1158 CKQIKQNLRTCHIPIIILSAKTDLKEQLEGLQVGADDYIPKPFSMAVIVAKIRNLFR 1214 >gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] Length = 234 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L I G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + Y++KP S + I+ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|206890474|ref|YP_002248031.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742412|gb|ACI21469.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 500 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 65/117 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D N+KL + ++ GY L +NG ALE+ + D++++D+ + + G E+ Sbjct: 8 ILCVDDEPQNLKLLQAILSPRGYEVLVAQNGFLALEILKNQNVDIVLLDVMMPGMDGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IKED L+ IPVI +TA K D R + G E ++SKP + + I + Sbjct: 68 CRKIKEDETLRHIPVIMITALTAKEDRIRGIEAGTEEFLSKPFDVGEVLARINMLLR 124 >gi|75907014|ref|YP_321310.1| response regulator receiver domain-containing protein [Anabaena variabilis ATCC 29413] gi|75700739|gb|ABA20415.1| Response regulator receiver domain protein (CheY) [Anabaena variabilis ATCC 29413] Length = 125 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + ++ GY +G A++ + PDVI++D+ L E+SG Sbjct: 1 MPHVLLVDDEVALCESLAYTLQKEGYTVTTVADGQSAIKQFHKQVPDVILLDLMLPEVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +I+ ++P++ +TA D+ + G + Y++KP + + IK + Sbjct: 61 MEVCWRIRA---FSDVPIVMLTAKDQDIDKIWGLEAGADDYVTKPFNTRELLARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia frederiksenii ATCC 33641] gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia frederiksenii ATCC 33641] Length = 232 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLL-DNSIDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ + PVI +TA + D + G + Y++KP + + I+ + Sbjct: 60 IETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602] gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 233 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +ALE + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKI-DNTIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQR---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL N1-067] Length = 236 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+++++ ++P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQNKV--DVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42] Length = 224 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D E + L +D E +GY ++G +AL+ ++ PD+I++DI + EI Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P++ +TA D+ + G + YI KP L + ++ Sbjct: 60 GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 233 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E + + + GYI NG +AL D+II+DI L GL+ Sbjct: 2 RILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGLK 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E+ P++ +TA D+ G + Y+ KP S S + I+ + Sbjct: 62 VCREVRENGI--STPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRR 118 >gi|254412249|ref|ZP_05026024.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181215|gb|EDX76204.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 414 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ + ++L+ + + NG EAL + PD+II D + + G Sbjct: 1 MAKILVVDDDLTVQLVLKNLLTSQNHDVAIANNGEEALRQVKLFHPDLIICDWIMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q+K D EL +I +T D + G + +ISKPI + + ++ + Sbjct: 61 LEVCRQVKADPELATTFIILLTMRDQITDRVQGLDAGADEFISKPIDMEELLARVRAGLR 120 >gi|16329618|ref|NP_440346.1| CheY family protein [Synechocystis sp. PCC 6803] gi|1652101|dbj|BAA17026.1| CheY subfamily [Synechocystis sp. PCC 6803] Length = 147 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 66/117 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ ++ +++ G+ +G+EALE + PD++++DI + ++G E+ Sbjct: 30 VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMNGYEV 89 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK D + + +PVI ++ + D + G +AYI+KP + TIK+ + Sbjct: 90 CRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLLR 146 >gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 234 Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK+++V+D + +++ + +E SGY + G EAL + + +I++D+ L ++SG Sbjct: 5 SKKILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEKVPLSLIVLDLMLPDLSG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K I++ S +P+I +TA A + D + G + YI+KP S + + + Sbjct: 65 EEICKIIRKKSR---VPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] Length = 233 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + NG +AL ++P++I++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S P+I ++A + D+ + G + YI KP + ++ + Sbjct: 65 QVCREIRAKSVT---PIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRR 121 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D+E + + R + GY L NG E L++ PDV+++D+ + ++ Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++++E IPV+ +TA + + G + Y+ KP +L + ++ + Sbjct: 61 GFEALRRLREGGST--IPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 229 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ +E G+ ++ NG EAL L + PD+I++D + ++G+E Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++K ++ + IP+I ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 67 ICRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 >gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] Length = 241 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + +G EA +LA + I++D+ L E+ Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEVASKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 234 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D+E KL + GY L+ +G+ ALE+ Q + D++I+D+ L + Sbjct: 1 MSKRILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + +I+E + P++ ++A D+ G + Y+ KP + + +K + Sbjct: 61 GISVCMKIRES---KTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|229592349|ref|YP_002874468.1| putative two-component response regulator [Pseudomonas fluorescens SBW25] gi|229364215|emb|CAY51897.1| putative two-component response regulator [Pseudomonas fluorescens SBW25] Length = 244 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGAGFRQAMNEAPCDLVILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ ++P+I +TA + + D + G + YI KP S IK + Sbjct: 65 FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 224 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D E + L +D E +GY ++G +AL+ ++ PD+I++DI + EI Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P++ +TA D+ + G + YI KP L + ++ Sbjct: 60 GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5] gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5] Length = 457 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + G EAL++ R+ + D++++D+ + +I Sbjct: 1 MSARVLVVDDVPANVKLLEARLSAEYFDVVTASCGREALDICRRAECDIVLLDVMMPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +Q+K D IPV+ VTA D R G + +++KP+S + + ++ Sbjct: 61 GFEVCRQLKSDPRTHFIPVVMVTALDSPADRVRGLDAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + ++ + + +AL A D++I+ + L+ GL Sbjct: 157 RILLVEDRPSSYERLAPILAEE-HTVDVEPDPAQALFHAADGNYDLLIVSLNLENYDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A++ R + G Y+ +P+ + + Sbjct: 216 LCSQARSLERTRNVPLLALSNADNNVQLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 233 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 64/127 (50%), Gaps = 4/127 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M + K+++V+D + + +E S + N E ++ ++ PD++I D+ + Sbjct: 1 MSQVSGKILLVDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKNLPDLVITDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G + ++++E+ + +PV+ +TA M D + + GC+AY+SKP + + Sbjct: 61 QVDGYQFLQKLREEPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVN 120 Query: 118 KYI-GEA 123 + A Sbjct: 121 NLLERRA 127 >gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 228 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ I Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117 >gi|119509005|ref|ZP_01628156.1| Response regulator receiver domain protein (CheY) [Nodularia spumigena CCY9414] gi|119466171|gb|EAW47057.1| Response regulator receiver domain protein (CheY) [Nodularia spumigena CCY9414] Length = 121 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 70/120 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED+ ++ DL++ SG I +G+EALE + PD++++DI + ++G Sbjct: 1 MSTVLIVEDSIAQREMITDLLKASGLIVTHAHDGVEALEAIQTAPPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K + + Q +PV+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YEVCRRLKSNPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120 >gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 910 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 69/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DNE+N+ + ++ +G NG E LE + D+I+MD+Q+ + G E Sbjct: 789 KILLVDDNEINLYMMEAILLAAGAEVTLAENGQECLERLEESSYDLILMDVQMPVLDGYE 848 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++D + + +P+IA+TA A+ D E+ + G +++KP + +I K + Sbjct: 849 TTRRIRKDEKYRALPIIAITANALSDDIEKCFEAGMNDHVAKPFKIEELDASIAKCL 905 >gi|330962192|gb|EGH62452.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 245 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAGFRQAFNEASSDLLILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC1989] gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC1989] Length = 233 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D + R +E + Y L+ + A L KP +I++D L SG+ Sbjct: 5 KTILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQKPSLILLDWMLPGTSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++K+D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 65 DLARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 124 >gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 236 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+ L + +E +GY L G EALE RQH +++++DI L I G E Sbjct: 5 TILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAVNMVLLDIMLPGIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D + ++P++ +TA + D+ + G + Y+ KP S I+ + Sbjct: 65 VCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123 >gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 236 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + R +E G+ ++ +G AL +AR KPD++++D+ + E+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++ ++ PVI +TA D+ + G + Y++KP ++ + I+ + Sbjct: 61 YEF---LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I++D+E + + R + GY L NG E L +PDV+++D+ + ++ Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++E +PV+ +TA + + G + Y+ KP +L + ++ + Sbjct: 61 GFEVCRRMREGGST--VPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] Length = 229 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ L++ +GY L N A+ PD++++D L S Sbjct: 1 MTKRILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ + I+ + + IPVI +TA + D + G + YI+KP S + ++ I Sbjct: 61 GIQFIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMI 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax delafieldii 2AN] gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax delafieldii 2AN] Length = 235 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +V+IVED +L + +G+ + + +G A PDVI++D L Sbjct: 1 MKKLPRVLIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL + ++ + D+ + IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 QSGLMLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++++D+ +L +++ G+ + NG +AL+ + K D+ ++DI + ++ G Sbjct: 1 MNKVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E KQ++ E ++P++ +TA + + + + G + Y++KP + + IK + Sbjct: 61 YEFCKQVRRYYE--DMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I+ED +L +E GY + +G+E L A PD+II+D+ L + G Sbjct: 1 METILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K +K+ IPVI +TA + D+ + G + Y+ KP S +K + Sbjct: 61 TEVCKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 242 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VED + +E GY + +G A+E +H+ D+I++D+ L ++SG Sbjct: 6 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + ++P+I +TA D + G + YI KP S + ++ Sbjct: 66 RVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRR 122 >gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 242 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 135 >gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 261 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++ +D+ ++ R E + +G EALE+ + +PDV+I+D+ + ++ G E Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ + P+I +TA + D + G + Y++KP S + I+ + Sbjct: 94 ACREIRKKW---DTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 >gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 1128 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 726 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +TA + D R + G Y+SKP + I+ ++ Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL 839 >gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ +D+ ++ +E +G +G AL+ + PD++++DI + E+ Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIGMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ + ++PV+ ++A + D + G + Y++KP S + + + Sbjct: 61 GLEVCRRLR---HISDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 227 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E+ + A+ +G A+E R+ KPD++++D+ L Sbjct: 1 MNAKILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ +P++ +TA + D R + G + YI+KP + ++ + Sbjct: 61 GIEVCREIR---RTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARL 117 Query: 121 GEA 123 ++ Sbjct: 118 RQS 120 >gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 239 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D L ++ SG+ + +G +AL++ + K D++++DI L E SG Sbjct: 1 MTKVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPEESG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++T++++ + +IP+I +TA + D+ + G + Y++KP S + + + Sbjct: 61 VDVTRELRAEKN--QIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501] gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501] Length = 228 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +++ + + GY RNG E +E AR+ P +II+D+ + E+ G+E Sbjct: 7 KILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++ LQ+ + +TA + G + YI+KPI +F+ +K + Sbjct: 67 ACEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKVKALLRR 125 >gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D KL +D + GY + +G E L+L Q D++I+DI + +I G Sbjct: 1 MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIMMPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E+S+ +P+I +TA A + D+ + + Y+ KP + + + +K + Sbjct: 61 WSVCRKIREESQ---VPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6] gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6] Length = 227 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + K G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3] gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W] gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + + G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1] gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619] gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440] gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida] gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida] gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1] Length = 227 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 232 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K ++I +D+ + + + G+ NG EA+E PD+I++D+ + E Sbjct: 1 MAKGPHILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLDMMMPE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+++ ++I+ S +P+I +TA + + D+ + G + YI+KP S+ + IK Sbjct: 61 MNGVDVCREIRRMS---NVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKA 117 Query: 119 YIGE 122 + Sbjct: 118 VLRR 121 >gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia baltica ATCC 49814] gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia baltica ATCC 49814] Length = 459 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 64/119 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D E N KL + + +G++A++ A +PD+I++D+ + + Sbjct: 1 MSARVLVVDDIEANRKLLCAKLAHEYFQVTTAVDGLDAIDKAIATEPDIILLDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E +++K D + IP++ VTA + D + + G + +++KPI+ + ++ Sbjct: 61 GFEACRELKFDPRTEHIPIVMVTALNEREDRLKGLRAGADDFLTKPINDLQLLSRVRAL 119 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGME-ALELARQHKPDVIIMDIQLQEISG 61 +V++V+DNE +ET G + A D++++ + ++ G Sbjct: 154 ARVLVVDDNERQAARICRYLETDHKPMTLANAGAKPGGVGAGAATVDIMVLSLGGEKYDG 213 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++ +++P++A+ + R G + +PI + +K + Sbjct: 214 LKLCAYLRNLEATRDLPILAIVGAEDEALAVRALDLGASDILVRPIDPEELLARVKTQVS 273 Query: 122 E 122 + Sbjct: 274 K 274 >gi|218262520|ref|ZP_03476947.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii DSM 18315] gi|218223331|gb|EEC95981.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii DSM 18315] Length = 963 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++ +DN+ ++ + Y+ ++ NG EAL + + P ++I D+ + E++GL Sbjct: 712 QTILLADDNQEVLQYLEQQL-CLDYVVVKAFNGKEALAMIEESYPHIVISDVMMPEMNGL 770 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K+IKE+ IPVI +TA +M E G + YI KP +S+ I+ + Sbjct: 771 ELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNIL 828 >gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 236 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + R +E G+ ++ +G AL +AR KPD++I+D+ + E+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++ ++ PVI +TA D+ + G + Y++KP ++ + I+ + Sbjct: 61 YEF---LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY +G+EAL++ +PD +++D+ + + Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family protein [Marinomonas sp. MED121] gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family protein [Marinomonas sp. MED121] Length = 232 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D+ L ++ GY L NG+EAL+L + PD++I+D+ + E+ G Sbjct: 1 MVKLLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQSPDLVILDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E K I+ S+ +PVI +TA D + G + Y+SKP + + IK + Sbjct: 61 FETLKLIRAKSK---VPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 256 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L +E SG+ + +G++ LA Q+ PD++++D+ L ++ GL + Sbjct: 5 ILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLVLLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IPV+ +TA D+ G + Y++KP L + IK + + Sbjct: 65 CQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRS 123 >gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 248 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ + GY + +G EAL ++ +PD++++D+ + ++ G Sbjct: 10 TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125 >gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] Length = 229 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED +L RD +E S + +G L+ A Q D+II+DI L +++G Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + + + ++ GY + +G+EAL + + + D++I+DI + + G Sbjct: 1 MAKILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +E + IP+I +TA + D+ + + G + YI+KP S + + + + Sbjct: 61 FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++VED + + ++ GY +G E L LA DV+++D+ L I+ Sbjct: 1 MPKKILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI ++I+ S+ +P+I +TA D G + YI KP ++ + I+ + Sbjct: 61 GIEICRRIRTQSQ---VPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EALEL +Q D+I++D+ + + G Sbjct: 1 MIKILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKNFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ L +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---LCNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLIARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 260 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ L +E SG+ + +G++ LA Q+ PD+I++D+ L + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] Length = 229 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + +D E GY + NG EA+E + D+I++DI + I Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQVCQKIRNKV---SCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile QCD-32g58] Length = 210 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ +L + + GY +G+E ++ +Q D++I+DI + + Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I++ S +P+I +TA +GD+ + C+ YI+KP S ++ ++ ++ + Sbjct: 61 GYGVCKMIRKSS---SVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|117928482|ref|YP_873033.1| response regulator receiver modulated diguanylate cyclase [Acidothermus cellulolyticus 11B] gi|117648945|gb|ABK53047.1| response regulator receiver modulated diguanylate cyclase [Acidothermus cellulolyticus 11B] Length = 304 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 60/117 (51%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ + + GY L +G A+ + PD++++++ L I G+E+T Sbjct: 2 LVVDDDPAMRQFLETNLRLDGYDVLTAADGPMAVAIVATQLPDLVLLEVGLPGIDGIELT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +EDS +PVI VTA + D + G + Y++KP ++ + ++ + Sbjct: 62 RRWREDSRTATLPVIMVTARSSTADRVLGLQAGADDYVTKPFDVAELLARVRSTMRR 118 >gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1323 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 71/120 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N ++ +L+ SG + NG EALE QH D+I+MDIQ+ + G Sbjct: 964 RVLLVEDNAINREVVLELLNNSGLVIETAVNGQEALERVSQHAFDLILMDIQMPLMDGYS 1023 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+ I+ +++P++A+TA A + D + G +I+KP++ + E +++++ + Sbjct: 1024 ATRAIRALPGWEQVPILALTASAFEEDRKACESAGMNDFIAKPVTPAKLFEALQQWLPHS 1083 >gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311] gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311] Length = 255 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++ ++ +GY + +G EALE PD++++D+ L ++ G Sbjct: 11 TILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFA 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 71 VCRRLRAESC---VPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRR 126 >gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I+ED + R +E +G+ L NG E +ELAR+ +PD++I+D+ L + Sbjct: 1 MNATILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++S ++ +I +TA + + D + G + Y+ KP S + I+ + Sbjct: 61 GMEVAARLRQES---DVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|290560102|pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of Yycf Length = 120 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + GY +G EA+E+ + +PD+I++DI L Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 244 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++ ED+ +L R + G+ +G AL A + PD++++D L + Sbjct: 1 MSTYVLVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRPPDLLVLDWMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ EL P++ +TA + + D R G + Y++KP + I+ + Sbjct: 61 GLEVCRRLRGAGEL---PILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1977 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 72/119 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N+ ++ GY L +NG EA++L + +PD+I+MDIQ+ + GL Sbjct: 1859 ILLAEDNEANISTISSYLKAKGYRVLVAKNGQEAIDLGQAAQPDLILMDIQMPGVDGLSA 1918 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q+++ +P+IA+TA AM GD +R G Y+SKP+ LS + I++ + ++ Sbjct: 1919 IQQLRQAPSSAHLPIIALTALAMNGDRDRCLAAGANEYLSKPVKLSQLVILIQQLLTQS 1977 >gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1133 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D +N+++ + ++ + Y Q +G EAL + D+I++D+ + +SG Sbjct: 723 HVLVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDVMMPNMSGY 782 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ QI+E Q +PV+ +TA D + G Y++KP + + I+ +I Sbjct: 783 EVCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHI 840 >gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU045] Length = 219 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D + + ++ GY +G +A++L + +PD++++DI L Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E +P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] Length = 226 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++E+ Y +G +AL+ + PD++++D+ L + Sbjct: 1 MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI + I+ +S ++P+I +TA D + G + Y++KP + + + Sbjct: 61 GVEICRLIRSES---DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 256 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L +E SG+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L + IK + + Sbjct: 65 CQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRS 123 >gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio furnissii CIP 102972] gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio furnissii CIP 102972] Length = 1113 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 60/115 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E L+ + KP+++++DI + +SG ++ Sbjct: 709 LVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVC 768 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + +PVI +TA D R + G Y+SKP + I ++ Sbjct: 769 EELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 823 >gi|260223180|emb|CBA33484.1| hypothetical protein Csp_B19290 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 396 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I ED + + ++E G+ L +G+EAL +A+ HKPD+++ D+ + + G Sbjct: 14 KILIAEDEPSLRENLQWMLELEGFEVLAACDGLEALAMAQTHKPDLVLTDVMMPGLDGFG 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E+ +P+I +TA A + D G + Y++KP +E + + + Sbjct: 74 LVKALRENPGSSTLPIIMLTARADRTDTRTGMNLGADDYLTKPCRREELLEAVHARLERS 133 >gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EALEL +Q D+I++D+ + + G Sbjct: 1 MIKILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKNFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] Length = 240 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D +++ R E GY L +G EAL+ A Q PD+I++D+ + E+ G+E Sbjct: 20 RILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKAEQQ-PDMILLDVNMPELDGME 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + P++ +TA + D + G + YI KP SL+ + ++ Sbjct: 79 VCRRIR---DFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRR 134 >gi|153875315|ref|ZP_02003172.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152068221|gb|EDN66828.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 383 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + N+ + + G+ L +NG +AL ++ PD+I++D+ + +SG E Sbjct: 8 TILIVDDIQENISVLFRFLSDEGFKVLIAQNGEQALRISEIGHPDLILLDVMMPGMSGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q+K + + QEIP+I +TA D+ + G YI+KPI + + +I Sbjct: 68 VCNQLKNNEKTQEIPIIFMTALTDIVDKIKGFSLGAADYITKPIQQEEVLARVNTHI 124 >gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui] gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var. liui] Length = 241 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + GY + +G E L + R+ P+++I+D+ + ++ G Sbjct: 7 KILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRREYPNLVILDVMMPKLDGYG 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 67 VCQEIRKES---DVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRR 122 >gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes FSL R2-561] gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes J0161] gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] Length = 236 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 215 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 63/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++M+V+D+ + L +D +E GY + NG EALE + PD+II D+ + E+ G Sbjct: 10 KRLMLVDDDPNLILLVKDYLEFRGYDVVTAENGREALEKLEEDLPDLIICDVMMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ED IPV+ ++A D + G + YI KP + ++ + + Sbjct: 70 TLVKHVREDPRTSWIPVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQVESSLKQ 129 Query: 123 A 123 A Sbjct: 130 A 130 >gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQE 58 M KK+++V+D L KL D ++ GYI L+ +G +AL++ K D++I+D+ L E Sbjct: 1 MSNKKILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + ++I++ S P+I +TA + DE G + YI+KP S +I + + Sbjct: 61 YDGWTVCREIRKKS---STPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNA 117 Query: 119 YIGEA 123 + A Sbjct: 118 VLRRA 122 >gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I +DNE + + + G+ L +G+EA+++ ++ P ++++D+ + + Sbjct: 1 MSKYILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNKYSPLLLLLDVMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+++S +P+I +TA A + D G + YI KP S M I+ + Sbjct: 61 GFEVCREIRQNS---NVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1286 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 48/116 (41%), Positives = 74/116 (63%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN+ N+K F + GY L NG +A+ELA H+PD+I+MDIQ+ I GLE Sbjct: 1166 ILLAEDNKANIKTFSSYLSAKGYDILLATNGQQAIELATIHQPDLILMDIQMPGIDGLEA 1225 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QI+ D +L IP++A+TA AM GD +R + G Y++KP+ L TI++ + Sbjct: 1226 IRQIRLDPQLVNIPIVALTALAMTGDRDRCLQAGANDYLTKPVKLKQLATTIQQLL 1281 >gi|332708948|ref|ZP_08428919.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332352490|gb|EGJ32059.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 373 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D+ N+ L + L+E GY NG ALE P+++++D+ + E+ G E+ Sbjct: 15 ILAVDDSPDNLFLLQTLLEEEGYEITLAENGRVALERIESSPPELVLLDVMMPEMDGFEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 TK+I+ + +L IP++ +TA+ + G + +I KP+ + + ++ + Sbjct: 75 TKRIRSNPKLPFIPILLITAYDHPS-VVKGLDMGADDFIRKPVEVDELLARVRSLLR 130 >gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 1618 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 68/117 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNELN + +L+ +G+ NG AL+L DV++MD+Q+ + G Sbjct: 1267 VLLVEDNELNQMVAVELLRDAGFAVDVAGNGERALQLLDGKNYDVVLMDMQMPVMDGETA 1326 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++++ D ++PVIA+TA AM+ D +R G +++KPI S+ + ++I Sbjct: 1327 TRRLRADPRHADLPVIAMTANAMEADRQRCFAAGMNDHVAKPIEPSVLWAALARWIR 1383 Score = 112 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 7/120 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 ++V++V+DN + +++++ G+ Q +G+EALE RQ ++++D + Sbjct: 1116 RRVLVVDDNHTAATVLSEMLQSMGFHVDQAYSGLEALETLRQATQQQKPYGLLLLDWHMP 1175 Query: 58 EISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+E+ I+ L EIP ++ VTA+ + R G EA + KP++ S+ +T+ Sbjct: 1176 GMDGVELAGHIRSMG-LAEIPQMLMVTAYGREDVMRAARAQGIEAVLIKPVNASVLFDTL 1234 >gi|126031093|pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D10a And D53e. gi|126031094|pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively- Active Double Mutant D10a And D53e Length = 127 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VE ++ ++E +G+ ++ + A+ + PD+I+++ L S Sbjct: 1 MARRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLEWMLPGGS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K +K +S ++IPV+ +TA + D R + G + YI+KP S + IK + Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V+IV+D E L +E +G+ L+ +G EAL L QH D +++D+ + + Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +I+E S ++P++ +TA + D+ + K G + YI KP S + ++ Sbjct: 61 DGFAVCARIREQS---DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED +L + +G+ +G AL LA ++ PD++++D+ L ++ G Sbjct: 11 ARLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T++++E Q V+ +TA D+ G + Y++KP SL + I+ + Sbjct: 71 EVTRRLRERGREQA--VLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128 >gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC586] gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp. RC586] Length = 1112 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 62/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E LE ++ KP+++++DI + +SG ++ Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTVQDGNEVLEAVKREKPELLLLDIMMPGMSGYQVC 767 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + E+P+I +TA D R + G Y+SKP + I ++ Sbjct: 768 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIIAHL 822 >gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1] gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1] Length = 253 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+E ++ ++ G+ + +G +ALE+ R KPD++++D+ L Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +QI+ +S ++P++ +TA + D R + G + Y+ KP + + ++ + Sbjct: 90 GIEVCRQIRGES---DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARL 146 Query: 121 G 121 Sbjct: 147 R 147 >gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 226 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + + + GY +G+ L LAR PD+ I+D L ++ Sbjct: 1 MTAHILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLPGLT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++++ +PVI +TA D G + Y+ KP S+ + I+ ++ Sbjct: 61 GLEICRRLRATGST--VPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+E +L + Y +G AL + KP +I++D+ L I G Sbjct: 5 QRILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S P+I ++A D+ + G + Y+ KP + +K I Sbjct: 65 QVCREIRAKSGT---PIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRR 121 >gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 231 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + ++ G+ NG EAL LA ++ D+ ++DI L + G E Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLPGMDGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +PV+ ++A + D+ + G + Y++KP + + ++ + Sbjct: 67 LCRRLRSKT---TVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122 >gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium kansasii ATCC 12478] Length = 240 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 14 ARILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 74 GVLRRLRADGV--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 Query: 123 A 123 A Sbjct: 132 A 132 >gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 237 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E + + GY + G EAL +PD++++D+ L +SG Sbjct: 1 MTRILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ ++PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRELRSRG---DVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + + +E G+ + +G EA+E A++H P +I++DI L G+E+ Sbjct: 6 ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIMLPYRDGMEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 66 CREVRKE---HDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRR 120 >gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630] gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile] Length = 224 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D E + L +D E +GY ++G +AL+ ++ PD+I++DI + EI Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P++ +TA D+ + G + YI KP L + ++ Sbjct: 60 GIEVCNRIR---DYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + + G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 227 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+ +V+D++ ++ +E G+ Q +G AL+ + + P ++I+DI L I G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIMLPGIDGIA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ ++P+I +TA D+ + G + YI KP + +K + Sbjct: 66 LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121 >gi|254220896|pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis gi|254220897|pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis Length = 130 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + + GY +G EA+E+ + +PD+I++DI L Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ ++P+I +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GVEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 229 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++KV++V+D + R +E G+ + +G A++L R+ PD++++D+ L I G Sbjct: 1 MRKVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + + VI VTA A + D+ G + Y++KP S +K + Sbjct: 61 LEVLRRLRA---VSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 239 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++E+ Y +G +AL+ + PD++++D+ L + Sbjct: 14 MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLD 73 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI + I+ +S ++P+I +TA D + G + Y++KP + + + Sbjct: 74 GVEICRLIRSES---DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRL 130 Query: 121 GE 122 Sbjct: 131 RR 132 >gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 234 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L + G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + YI+KP S + ++ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia intermedia ATCC 29909] gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia intermedia ATCC 29909] Length = 232 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLL-DNSIDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ + PVI +TA + D + G + Y++KP + + I+ + Sbjct: 60 IETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio furnissii NCTC 11218] Length = 1113 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 60/115 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D +N+++ + GY ++G E L+ + KP+++++DI + +SG ++ Sbjct: 709 LVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVC 768 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++ + +PVI +TA D R + G Y+SKP + I ++ Sbjct: 769 EELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 823 >gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] Length = 238 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 66 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 122 >gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1002] gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1002] Length = 233 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GISFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|157363872|ref|YP_001470639.1| response regulator receiver protein [Thermotoga lettingae TMO] gi|157314476|gb|ABV33575.1| response regulator receiver protein [Thermotoga lettingae TMO] Length = 124 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 73/122 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+E+ K+ + GY + ++G EALE RQ KPD++I+DI + I Sbjct: 1 MGYRVLVVDDSEVLRKIVSFNLIKEGYSVQEAKDGREALEKLRQEKPDLVILDIMMPYID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +++D L+EIPVI +TA + D + + G ++++KP S +E +++ I Sbjct: 61 GFEVLRTMRKDENLKEIPVIMLTAKGGESDPKTALELGANSFLTKPFSPLKLLEEVRRVI 120 Query: 121 GE 122 Sbjct: 121 QR 122 >gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 234 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + + GY +G EAL+L +PD++++D L E+ G Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEVEG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ S+ PVI VTA + D+ + G + Y++KP S + IK + Sbjct: 61 TEVLRQIRTKSQT---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08] gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07] gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08] gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07] Length = 223 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + + + ++ GY + +G+EAL + + + D++I+D+ + + G Sbjct: 1 MAKILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVMMPYLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +E + IP+I +TA + D+ + + G + YI+KP S + + + + Sbjct: 61 FSVCRVSREMT---NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 457 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + +G AL + +++ D+I++DI + I Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKANRKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 80.6 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+ + + ++ L + AL A + D++I++ + L + Sbjct: 158 ILLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +P++ +T R G YI +P+ + + I Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274 >gi|22299981|ref|NP_683228.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296166|dbj|BAC09990.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 163 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 71/120 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +M+V+D+ + +L++ GY ++ +G+EA E + PD++I+D+ + ++G Sbjct: 44 MATIMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNG 103 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + IK ++ Q++PVI T + + D +K G +AYI+KP + + ++K+ +G Sbjct: 104 YELCRWIKGEAVSQKVPVIMCTTKSEEFDIHWGKKQGVDAYITKPFDPAELVASVKQLLG 163 >gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED++ + L + +G+ + G EAL +A++ +P +I++D+ + G E+ Sbjct: 6 VLIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIAKERRPGLIVLDLMIPGADGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K S+ + IPVI +TA + D + G + Y+ KP S + I+ + + Sbjct: 66 CRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRRS 124 >gi|312962809|ref|ZP_07777296.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311282836|gb|EFQ61430.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 244 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + + +G+ +G + + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGAGFRQAMNEAPCDLVILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ ++P+I +TA + + D + G + YI KP S IK + Sbjct: 65 FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|189463997|ref|ZP_03012782.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM 17393] gi|189438570|gb|EDV07555.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM 17393] Length = 1329 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN+ + ++ Y + NG E +E A ++ PD+II DI + + G+E+ Sbjct: 1076 ILIVEDNDDIREYIATSF-SNNYHIMTATNGKEGIEQALKYIPDIIISDIMMPVMDGIEL 1134 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKED IPVI +TA D+E + G ++Y++KP S + + + Sbjct: 1135 CKLIKEDVRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLHSRVHNLL 1190 >gi|104783385|ref|YP_609883.1| two-component response regulator GltR [Pseudomonas entomophila L48] gi|95112372|emb|CAK17099.1| two-component response regulator GltR [Pseudomonas entomophila L48] Length = 240 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + + SG+ +G D++I+D+ L + G Sbjct: 6 KSILMVDDDQDIRELLQTYLARSGFQVHAEADGQGFRRALDSSPCDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ L +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 66 SLCRWVRQHPRLSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1788 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+ +N L R+++ + + +G AL+L ++ D+I MDIQ+ + G Sbjct: 1331 RVLLVEDHPINQALAREMLSLAKLQVITADHGQHALDLLQEASVDLIFMDIQMPVMDGFS 1390 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+ D Q IP+IA+TA AM D ++ GG ++ KPI + I +++G Sbjct: 1391 ATQAIRADPRWQHIPIIAMTAHAMADDRQKCLDGGMNDHLGKPIDPPLLFAKITQWLG 1448 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 8/121 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V++V+DN+ ++ + ++++ GY G + L D+I+MD + + Sbjct: 1182 RVLVVDDNQTVREVLQRMLKSFGYWVDLAAEGPTGVALVESALQQGQPYDLILMDWHMPQ 1241 Query: 59 ISGLEITKQIK--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + GL+ ++QI+ + Q PV I A+ + + + G ++ KP + + Sbjct: 1242 MDGLQASEQIRHLQGVRAQRTPVMIMAAAYGQEDSHTAVSEPGFAGFLEKPTTPANLFGA 1301 Query: 116 I 116 I Sbjct: 1302 I 1302 >gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 232 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D + L + +E +GY +G AL+L Q + D +++D+ L E+ G Sbjct: 1 MSRILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +Q++E+S IPVI VTA + D + G + YI+KP S + +K + Sbjct: 61 MSVLRQMRENSI--RIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM 13528] gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +E++GY +G A + ++KPD++++DI L I G++ Sbjct: 7 KILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPNIDGID 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+++ E PVI +TA D+ + G + YI KP + IK + Sbjct: 67 VLKWIRKEYET---PVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRR 122 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D+ + R + +GY +G+EALE+ + +PD +++D+ + + GLE Sbjct: 27 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 86 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++P++ +TA + G + Y+ KP +L + I+ + Sbjct: 87 VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 143 >gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB] gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB] Length = 787 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 69/121 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++ ED+ +N ++ +++E + NG+ A+E R+ D+++MD+Q+ E+ GL Sbjct: 661 RSVLLAEDSWVNREVVVEMLEDQLLVVDVVENGVAAVERVRERDYDLVLMDVQMPEMDGL 720 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T++I+ + + +P+IA+TA A D + + G Y++KP S + ++ E Sbjct: 721 EATRRIRAMPQRERLPIIALTANAFAEDRQACLEAGMNDYLAKPFSPDKLFARVLHWLLE 780 Query: 123 A 123 A Sbjct: 781 A 781 >gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 222 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D+ L + E GY+ + +G E LE H D+I++D+ + G Sbjct: 1 MQKILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVMMPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+ PVI +TA + D+ G + YI+KP S M IK + Sbjct: 61 FQTLSEIR---GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 668 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +N + G+ +G EAL L + D+++MDIQ+ ++GL+ Sbjct: 546 RILLAEDEPVNRIFTVRALTKLGHQVETAVDGREALALLGRAPFDLVLMDIQMPRLNGLD 605 Query: 64 ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ IPV+A+TA+AM D ER + G + Y++KP + +++ + Sbjct: 606 ATRMIRSGQVPGLSASIPVVALTAYAMDSDRERGLEAGMDEYVTKPFEPQELVAAMERAL 665 Query: 121 GE 122 + Sbjct: 666 RK 667 >gi|262198125|ref|YP_003269334.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262081472|gb|ACY17441.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 317 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ +D+ +++ +++ GY +G +A E A + PD++I D+ + + Sbjct: 8 MPPRILVADDDAWILRMVTTVLKKRGYEVDTAPDGEQAYERALSNPPDLLITDVMMPNVD 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + KQ++E L ++PVI +TA + D + G + Y+ KP + + + Sbjct: 68 GWTLVKQMREHPSLCDVPVIFLTALSADDDRIHGFRLGADDYLPKPFRFEELDLRVARTL 127 Query: 121 GE 122 Sbjct: 128 RR 129 >gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + + ++ GY +G+ L R+ P+++I+D+ L + G+E+ Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLMLPVMDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +P++ +TA D+ + G + Y+ KP S+ + ++ ++ Sbjct: 66 ARRIRK---TSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRR 120 >gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + ++G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D R K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 873 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 71/118 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED +N ++ +L+ G +G++A++L ++ DVI+MD+Q+ E+ GL Sbjct: 752 RRVLLVEDEPINQEVAGELLREVGLEVELAADGLQAVQLVVENDYDVILMDMQMPEMDGL 811 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I++ Q +P++A+TA A D ER G +I KP++ + T+ +++ Sbjct: 812 EATRAIRKLPGRQTVPILAMTANAFAEDRERCMASGMNDFIPKPVNPDVLYATLLRWL 869 >gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1274 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 51/116 (43%), Positives = 74/116 (63%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N+K F + GY L NG +ALELA H+PD+I+MDIQ+ I GLE Sbjct: 1154 ILLAEDNEANIKTFSSYLSAKGYGILLATNGEQALELATIHQPDLILMDIQMPGIDGLEA 1213 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QI+ D EL IP++A+TA AM GD +R + G Y++KP+ L TI++ + Sbjct: 1214 IRQIRLDPELVNIPIVALTALAMTGDRDRCLQAGANDYLTKPVKLKQLATTIQQLL 1269 >gi|330807931|ref|YP_004352393.1| two-component Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376039|gb|AEA67389.1| Putative two-component Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 243 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + +G+ T +G + D++I+D+ L + G Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFQVRTTPDGAGFRQALNDAPSDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 66 SLCRWVRQHPRQAHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D +L +K + +E G +G EA ELA Q+ D+I++D+ L E++ Sbjct: 1 MANKVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPELN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+E S ++P+I +TA D+ + G + Y++KP ++ IK I Sbjct: 61 GFEVCQMIREKS---DVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAII 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 269 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +K+ +E +GY + ++G EALEL + PD++++D+ L ++ G Sbjct: 25 ATILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVMLPKLDGF 84 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ +S +P+I ++A + G + Y+SKP S I + Sbjct: 85 AVCRRIRGESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 141 >gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum] Length = 2059 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N +L L+E G+ NG++A+ D+I+MD+Q+ + G E Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKHFDLILMDVQMPHMGGFEA 1799 Query: 65 TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T QI+ E +E P+IA+TA A+ D + + G + YISKPI+ I+KY+ Sbjct: 1800 TAQIRKLESNEGIHTPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQLKSMIEKYL 1857 Score = 54.0 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 13/120 (10%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEIS 60 ++V+DN+ +K+ ++ G + T NG +A ++ + + + +D Q+ + + Sbjct: 1604 LVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAAQSNRPYEFLFIDAQI-DTN 1662 Query: 61 GLEITKQIKEDSELQEIPVIAVT-AFAMKGDEERIRKG-GCEAYISKPISLSIFMETIKK 118 I I ED +L + VI + +G E G Y+SKP+S S +E ++K Sbjct: 1663 ---IVDLISEDPKLSKTNVIMLICGGGQRGCPENASSLIG--GYLSKPVSPSEMLEILQK 1717 >gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G AL + D++++D+ L E+SG Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +P+I VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1] gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|212690595|ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855] gi|212666841|gb|EEB27413.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855] Length = 1440 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1242 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1243 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301 >gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 229 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 2/125 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M ++++V+D + +E G+ N +A ++ +Q PD++I DI + ++ Sbjct: 1 MSAQLLLVDDEPGIRESVPAYLEEVGGFTVDVASNANDAWQMLQQKTPDLVITDIMMPQV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+++ED + +PVI +TA M D + + GC+AY+SKP + ++ Sbjct: 61 DGYQFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKPFDTDELVAIVENL 120 Query: 120 I-GEA 123 + A Sbjct: 121 LERRA 125 >gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] Length = 229 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L +D +E SG+ +G L+ A + D+ I+D+ L I G Sbjct: 1 MSKILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI +QI+ + + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICRQIR---DKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix family [Leptospirillum rubarum] Length = 231 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED + L + + T NG+E L LAR PD+I++D+ L + Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + +K+D IPV+ +TA + + D + G + YI KP + + IK + Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + Sbjct: 1 MLPKILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 232 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++I +D+ +L ++ GY ++ +G A+E+ + D++++DI + ++ Sbjct: 1 MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ Q +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRTK---QNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 218 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +L ++ GY + NG EAL+ D +++DI + E+ GL + Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 62 KEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRR 115 >gi|150003546|ref|YP_001298290.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931970|gb|ABR38668.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1378 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ R L + Y + NG E + +AR+ PD++I D+ + ++G E Sbjct: 1118 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 1176 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KED + IP+I +TA + + + G + YI KP + I +K+ I Sbjct: 1177 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1233 >gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20] gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20] Length = 222 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IV+D+ L + E GY+ + +G E LE H D+I++D+ + G Sbjct: 1 MQKILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVMMPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+ PVI +TA + D+ G + YI+KP S M IK + Sbjct: 61 FQTLSEIR---GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + R ++ +GY ++G EAL Q +PD+ ++D+ + ++ GL Sbjct: 2 KILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGLG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + P++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRELRSSGYDR--PILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119 >gi|237725226|ref|ZP_04555707.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229436492|gb|EEO46569.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1446 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 >gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 229 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + EA PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHACDAREAQTAIADRLPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ +++ +EIP+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38] gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D + +++ + GY + NG EA+ +A++ P +IIMD+ + Sbjct: 1 MKKKDIKILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I++ ELQ+ + +TA + + G + YI+KPI + + ++ Sbjct: 61 EMDGMEACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKVQ 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 236 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916] Length = 248 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + ++ + GY + +G EALE R +PD++++D+ + ++ G Sbjct: 10 TILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVMMPKLDGYG 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 70 VCQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] Length = 230 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ ED + R ++ G+ +G A + ++ D++++D+ + ++ G Sbjct: 6 MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQEGVFDLLVLDVIMPKMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q + E PVI +TA D + G + Y+ KP S IK + Sbjct: 66 LEVCRQFR-LKEGYHTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 239 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 5/122 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+DN+ ++ L+E GY + +G A+ A D+II+D+ + ++ Sbjct: 11 MGSRILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKAEDM--DLIILDVMMPKMD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QI+E + P++ +TA M D+ G + Y++KP S + + +K + Sbjct: 69 GFKACRQIRE---VTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 268 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ +L +E +G+ +G++ LA Q+ PD+I++D+ L + GL + Sbjct: 5 ILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA A D+ G + Y++KP L +K + Sbjct: 65 CQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLLRR 122 >gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+ +V+D++ ++ +E G+ Q +G AL+ ++ P ++I+DI L I G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIMLPGIDGIA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ ++P+I +TA D+ + G + YI KP + +K + Sbjct: 66 LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121 >gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 65/125 (52%), Gaps = 3/125 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K ++++V+D +++ + GY + NG EA+++A++ P +II+D+ + Sbjct: 1 MKKKDIRILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E +Q+++ EL++ + +TA + G + YI+KPI + + +K Sbjct: 61 GMDGIEACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1438 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G L NG+E +E R+H D+I+MD+ + E+ G Sbjct: 1309 RTVLVVDDDARNLYALSGILELHGINVLHAENGIEGIEALREHPGIDLILMDVMMPEMDG 1368 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T +I+E +P+++VTA AM GD E+ G Y++KP+ + +++++G Sbjct: 1369 YTATMKIREVPAHATLPIVSVTAKAMPGDREKSLAAGASDYVTKPLDADDLIACVRRWLG 1428 Query: 122 E 122 Sbjct: 1429 R 1429 >gi|237709630|ref|ZP_04540111.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229456266|gb|EEO61987.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1446 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 >gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ ++ + + L+ +G++ALE A D++I+D+ L + G Sbjct: 1 MARVLVVDDDPAIREVLAAYLARERFEVLEAEDGLQALEQA--PGADLVILDLMLPGMDG 58 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D ++P++ +TA + + R + G + Y++KP S + ++ + Sbjct: 59 WRVAQELRRD--WPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D+E + + R + GY L NG E L++ PDV+++D+ + ++ Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++++E PV+ +TA + + G + Y+ KP +L + ++ + Sbjct: 61 GFEALRRLREGGST--TPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + ++ GY +G+ L AR+ PD+I++D L IS Sbjct: 1 MAAHILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K++++ + ++P+I +TA D G + YI KP SL + ++ + Sbjct: 61 GLEICKRLRQTGD--KVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D + L + GY + +G EA++ R DVIIMD+ + + G Sbjct: 1 MPKILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSEDFDVIIMDVMMPDTDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IKE ++IPVI ++A + D+ + G + Y++KP S M IK + Sbjct: 61 FTACKKIKE---FKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILS 117 Query: 122 EA 123 + Sbjct: 118 HS 119 >gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621] gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ I Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117 >gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1670 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 68/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++VEDNELN ++ R ++E G NG +ALE ++IMDIQ+ E+ G Sbjct: 1331 SPKILLVEDNELNQQVARRMLEGMGLDVDVADNGRKALEALESEPYSLVIMDIQMPEMDG 1390 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 L ++ I+ D + +P++A+TA AM GD E+ + G +++KPI + KY+ Sbjct: 1391 LTASRIIRSDERYRNLPILAMTAHAMPGDREKSFEAGMNEHLTKPIDPEELKRALVKYL 1449 Score = 70.9 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPD---VIIMDIQLQEISG 61 +++E N + + R +E SG + ALE LA D +I++ ++Q++ Sbjct: 1187 LVIEGNMMAREFIRSTMEKSGITVMVDSTASSALERLAESIDVDGLGLILVSGKIQDMHV 1246 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIK 117 LE+ ++I+ +L +P+I ++ M + G + ++++P+S ++ Sbjct: 1247 LEVVERIRNMPKLMHVPIILMSPVNMDESFRKEAALVGVDGFVTRPVSRLSLYAALQ 1303 >gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 221 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 75/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++VED+ + ++++ SGY+ + +G+ A+E+ R+ D+II+D+ L +I Sbjct: 1 MPKKILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE R + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SVPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016] gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I +DN +K+ R I G+ + NG EAL+ Q+ P +I++DI + Sbjct: 1 MTKNILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIMMPIFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ P+I +TA + D+ G + YI KP S + IK Sbjct: 61 GMEVCKLIR---LKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L] gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + R+G EA+ I++DI + + G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+ +V+D +++ + +E G+ + NG L ++ KPD++I+D+ L IS Sbjct: 1 MNKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I++ +P++ +TA + D+ G + Y++KP S + +K + Sbjct: 61 GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|311695852|gb|ADP98725.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 246 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ +L + + GY +G + E D+I++D+ L G + Sbjct: 16 VLVVDDDAAIRELLEEHLTRVGYDVRTAGDGDQMRERLNSSHVDLIVLDVMLPGDDGFTL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QI+E +P+I +TA + + D + G + Y++KP S +K + A Sbjct: 76 CRQIRE---YSRVPIIMLTASSDETDRVVGLELGADDYLAKPFSARELQARVKALLRRA 131 >gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED L + G+ Q +G++AL L QH+P +II+D L + G Sbjct: 1 MARVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQHQPQLIILDWMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ + +P++ +TA + D + G + YISKP S+ M ++ + Sbjct: 61 LSVCRRVRLNYL---MPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|206889241|ref|YP_002249148.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741179|gb|ACI20236.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 122 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 47/121 (38%), Positives = 83/121 (68%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+DNE + +L + +++ GY ++ +G +A+ A ++PD+I+MDI + +I G Sbjct: 1 MKTILVVDDNEDSRELVKKILKKHGYEVIEAVDGEDAIAKALAYRPDLILMDISIPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+++KE + ++ P+IA TA AM+GD+E+ + GC YISKPI++ F E IK Y+ Sbjct: 61 YEATRRLKERPDFKDTPIIAFTAHAMRGDQEKALQAGCNGYISKPINVREFPEQIKIYLK 120 Query: 122 E 122 E Sbjct: 121 E 121 >gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 228 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +ET+GY +G A E P+++++D+ L I G+E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS +PVI +TA D+ + G + Y+ KP + +K + Sbjct: 67 VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122 >gi|159897248|ref|YP_001543495.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890287|gb|ABX03367.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 531 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + + ++E +GY R+G EAL + Q PD+I++D+ + E+ G + Sbjct: 8 ILIVDDQTTNVMVLQRMLERAGYATACARSGFEALTMLEQQVPDLILLDVMMPEMDGYQT 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I+E + L IP+I V+A D G + Y++KP++ + ++ + Sbjct: 68 LQAIRERNHLPFIPIIFVSAKQTTADTVTGLDLGADDYVTKPVNRDELLARMRVLLR 124 >gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua Clip11262] gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua Clip11262] Length = 236 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKVG--VPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] Length = 229 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED ++ +E G+ ++ NG EAL L + PD+I++D + ++G+E Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++K ++ + IP+I ++A + + D+ R + G + Y+ KP S+ M ++ + Sbjct: 67 ICRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125 >gi|239942395|ref|ZP_04694332.1| putative two-component systen response regulator [Streptomyces roseosporus NRRL 15998] Length = 207 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D + R + GY +G +AL +A + PD+I++DIQ+ + GL Sbjct: 9 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ P++ +TA GD G + Y+ KP L I+ + Sbjct: 69 TAARRIRATGST--TPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126 >gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803] gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQNFTFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + YI+KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRR 118 >gi|158338729|ref|YP_001519906.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158308970|gb|ABW30587.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 333 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D N++L D++E GY LQ NG AL+ +P +I++DIQ+ E+ G Sbjct: 35 KILLVDDQPQNLRLLTDVLEEQGYEVLQALNGNVALQAVSLDQPQLILLDIQMPEMDGYT 94 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K D Q+IPV+ V+A D+ + G YI+KP + + ++ + Sbjct: 95 VCQKLKADPSTQDIPVVFVSALDESWDKVKAFSVGGVDYITKPFKVVEVLARVQNQL 151 >gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] Length = 244 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + ++ GY + +G EALE+ PD++++D L EI G Sbjct: 8 MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ +S PVI VTA + D+ + G + Y++KP S + +K + Sbjct: 68 TEVLRQIRSNS---STPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I+ED + R +E +G+ L +G E +ELAR PD++I+D+ L + Sbjct: 1 MNATILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++DS ++ ++ +TA + + D + G + Y+ KP S + ++ + Sbjct: 61 GMEVAARLRQDS---DVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300869422|ref|ZP_07114007.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300332552|emb|CBN59205.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 237 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 71/116 (61%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N+ ++ GY + +NG EA+ LA+ P++I+MDIQ+ + GLE Sbjct: 119 ILLAEDNEANISTVSSYLKAKGYRIVLAKNGEEAIALAKSENPNLILMDIQMPGMDGLEA 178 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QI+ D +L ++P+IA+TA AM D +R G YISKP+ L TI++ + Sbjct: 179 MQQIRLDPKLVKVPIIALTALAMSSDRDRCLAAGANDYISKPVKLKQLAATIQQLL 234 >gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135 >gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99] Length = 236 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] Length = 239 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VED + +E GY + +G A+E +H+ D+I++D+ L ++SG Sbjct: 6 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + ++P+I +TA D + G + Y+ KP S + ++ Sbjct: 66 RVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRR 122 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59 +K++++VED ++ ++ +GY + G EA+++ ++ DV ++D+ + + Sbjct: 1 MKRILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++I+E + I +I +TA + + D+ G + Y++KP S S + + Sbjct: 61 DGFEVCRRIREKN--SSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDAL 118 Query: 120 IGE 122 Sbjct: 119 HRR 121 >gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC 23134] Length = 1269 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61 K+++V+D +N+++ + + Y Q +G++AL++ ++ D+I++D+ + ++SG Sbjct: 886 KILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMSG 945 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + I+E L E+PV+ +TA D G Y++KP S + IK ++ Sbjct: 946 YEVCRTIRERFPLVELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKVELLSRIKTHV 1004 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED +L + +G+ + G EA++LA QH PD+ ++D+ L ++ G Sbjct: 10 ATLLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++E + +P++ VTA D+ G + Y++KP SL + I+ + Sbjct: 70 AVTRKLRESG--RRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127 >gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator [Burkholderia pseudomallei K96243] gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC 23344] gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710b] gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei SAVP1] gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10229] gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 668] gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10247] gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106a] gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 305] gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei PRL-20] gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis TXDOH] gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis Bt4] gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 576] gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pakistan 9] gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei MSHR346] gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei GB8 horse 4] gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106b] gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei ATCC 10399] gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1655] gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei S13] gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei FMH] gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei JHU] gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710a] gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 406e] gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei 2002721280] gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator [Burkholderia pseudomallei K96243] gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC 23344] gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710b] gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei SAVP1] gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10229] gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 668] gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106a] gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10247] gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 305] gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei FMH] gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei JHU] gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei 2002721280] gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 406e] gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei ATCC 10399] gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei S13] gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1655] gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 576] gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pakistan 9] gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei MSHR346] gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei GB8 horse 4] gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106b] gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei PRL-20] gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710a] Length = 233 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341] gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341] Length = 234 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E + ++ GY + +G +A+ELA PD+I++D+ L + G+E Sbjct: 5 KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKKDGME 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP+I +TA + D+ + G + Y++KP S M +K + Sbjct: 65 VCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 >gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B] gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B] Length = 1947 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 77/119 (64%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNE+N +L +++ T G NG EAL+L H+ D ++MD Q+ + G E Sbjct: 1614 VLLVEDNEINQELAVEILTTHGMTVQVANNGQEALDLIAAHQFDGVLMDCQMPVMDGYEA 1673 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+ I+ + +++PV+A+TA AM GD+E++ + G +I+KPI+L+ +T+ K+I A Sbjct: 1674 TRHIRNNPATKDLPVLAMTANAMVGDKEKVIEAGMNDHIAKPINLADLFKTMAKWISPA 1732 Score = 107 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD----VIIMDIQLQEIS 60 +++V+DN+ ++ ++E+ G+ G +A+E+ + D ++++D ++ + Sbjct: 1465 ILVVDDNQSAREILAAILESLGFQIKTASGGRQAVEMIKAADADEPFKLVMLDWRMPGLD 1524 Query: 61 GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G++ + I+ED+ L+ P +I +TAF + +E +++KP + S ++ I + Sbjct: 1525 GVQTGQLIQEDTTLKNQPKIIMITAFGREEMQEGAGGLAISGFLTKPATASSLLDEIMRA 1584 Query: 120 IGE 122 +G Sbjct: 1585 MGR 1587 >gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 234 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+E ++ +E GY + +G +ALE A PD++I+D+ + + G+E Sbjct: 5 TILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMIPGLDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++++ P+I ++ + D+ G + Y+SKP + IK ++ Sbjct: 65 VCQALRKNL---STPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRR 120 >gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis MSMB43] Length = 233 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 256 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D E ++L ++ +G + R+G EAL + +P VII+D+ L + G Sbjct: 33 TVLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDGFT 92 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E + P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 93 LCRHLRERGI--QTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR 149 >gi|265754262|ref|ZP_06089451.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234971|gb|EEZ20526.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1446 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 >gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes 10403S] gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes FSL J2-003] gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] Length = 236 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 567 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 67/117 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ N + + GY + NG EAL + + + D+I+MD Q+ +SG+ Sbjct: 443 AHILLVDDDVFNRTIIGAWLRRWGYRLREATNGKEALAVLEEERFDLILMDEQMPGMSGI 502 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E +I+ D+ + IPVIAVTA AMKGD ER G Y+SKP S + + ++ + Sbjct: 503 ETVDRIRADARWKNIPVIAVTANAMKGDRERFLAAGMNDYLSKPFSPADLLHVVRVW 559 >gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] Length = 236 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+ +L + Y + +G EAL++ + KP+++++D+ L I G Sbjct: 5 QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ S+ +PVI ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCRELRASSQ---VPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|329956866|ref|ZP_08297434.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328523623|gb|EGF50715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1474 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ ++ + + Y + NG E L+ A PD+II D+ + + GLE+ Sbjct: 1219 ILVVEDNKELRTFLKNSL-SEHYTVITAANGKEGLQHAIDDLPDLIISDVMMPVMDGLEM 1277 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQIKE+S + IP+I ++A A D + G + YI+KP S + I + + Sbjct: 1278 VKQIKENSAICHIPIIILSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIITLLRQ 1335 >gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 234 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED ++ + G+ + +G +AL L R +PD++++DI L E+ G Sbjct: 11 MALVLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPEMDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ PVI VTA D+ + G + Y++KP S + +K + Sbjct: 71 LEVLRRIRSSG---HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5] Length = 230 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I+ED E L +D +E S + +G A + D+II+D+ L + Sbjct: 1 MSKKILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +Q+++ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 GFEICRQVRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 AR 119 >gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ +D+ +K+ + G+ ++ +G EAL+LA +PD++I+D+ + ++ G Sbjct: 5 RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+ S +P++ +TA D+ + G + Y++KP L+ + + + Sbjct: 65 AVCGRIRAASA---VPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRR 121 >gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L] gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L] Length = 237 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I ED++ L + +E Y+ NG EAL+L Q+ +++I+D+ + ++ Sbjct: 1 MKDIRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKAL 117 Query: 120 IGE 122 + Sbjct: 118 MRR 120 >gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus] gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis serovar chinensis CT-43] Length = 238 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122 >gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED++ ++L ++++G+ ++G +AL AR+ P II+D+ L + Sbjct: 1 MSKDSILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTPPAGIILDLMLPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K++K D + P+I +TA + D + G + Y+ KP S + ++ Sbjct: 61 DGFEVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAV 120 Query: 120 IGE 122 + Sbjct: 121 LKR 123 >gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 409 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N+++ ++ GY +G A+E H+P++I++DI + I G E Sbjct: 10 ILIVDDNPNNLEVLAHILTDVGYQVSVAIDGETAIEQVEYHQPELILLDIMMPGIDGFET 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + EIP+I +TA + ++ G YISKP + I+ ++ Sbjct: 70 CRRLKANPLTCEIPIIFLTALSDSNNKVNGLSVGAVDYISKPFQSEEVLARIRIHL 125 >gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ ++ + + G+ ++G AL + D++I+DI L + G Sbjct: 1 MPRILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++I+E ++IPVI VTA + D+ G + YI+KP S I+ + Sbjct: 61 MKVCRKIRE---TKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] Length = 238 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122 >gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D++ +L ++ GY + +G EA + Q + ++D+ + +G Sbjct: 1 MATILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVMMPNKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ +L ++P++ VTA D+ + + G + YISKP + +K + Sbjct: 61 WELCREIR---DLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] Length = 239 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +L GY T +G EAL LA + PD++I+D ++ SG+E Sbjct: 15 KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D +P+I +TA + D R + G + Y++KP S + + + Sbjct: 75 VCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRR 133 >gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum] Length = 457 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + +G AL + +++ D+I++DI + I Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 78.6 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ L + AL A + D++I++ + L + Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +P++ +T R G YI +P+ + + I Sbjct: 217 CSQLRSLERTRFLPILIITEQGADNMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274 >gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862] Length = 233 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + + + + GY + +G EAL+L PD++++D L E+ G Sbjct: 1 MSKILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQMLPELEG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ S+ PVI VTA + D+ + G + Y++KP S + IK + Sbjct: 61 TEVLRQIRTKSQT---PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED + ++ G+ +G +AL+ ++ D++++D+ L +SG Sbjct: 1 MTRVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQIRA---TSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1] gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1] gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family [Bacteroides xylanisolvens XB1A] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++VED ++ G+ +G ++ + D++I+DI + +I+ Sbjct: 1 MMAKILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMPKIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++ Q PVI +TA D + G + Y+ KP S IK + Sbjct: 61 GLELCRLYRQTFGYQS-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] Length = 238 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122 >gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K++IV+D + L + GY L+ NG+EALEL + + +II+DI + ++ Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E +I+E+ + +P+I ++A + D+ G + YI+KP + + +K Sbjct: 61 DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + Sbjct: 1 MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1130 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 +++V+D +N+++ + ++ + Y Q +G EAL H D+I++DI + ++G Sbjct: 720 HILVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDIMMPNMTGY 779 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ QI+E Q +PV+ +TA D + G Y++KP + + I+ +I Sbjct: 780 EVCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHI 837 >gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+ +V+D++ ++ +E G+ Q +G AL+ ++ P ++I+DI L I G+ Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGIA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ ++P+I +TA D+ + G + YI KP + +K + Sbjct: 66 LCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121 >gi|253732135|ref|ZP_04866300.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724090|gb|EES92819.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 188 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + NG EA ELA ++ I++D+ L E+ Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIQVATKLREH---KQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix family [Leptospirillum sp. Group II '5-way CG'] Length = 231 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED + L + + T NG+E L LAR PD+I++D+ L + Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I + +K+D IPV+ +TA + + D + G + YI KP + + IK + Sbjct: 61 GLSINRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53] gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase [Rhodopseudomonas palustris BisA53] Length = 457 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N KL + + L +G +ALE+ + + D+I++D+ + ++ Sbjct: 1 MSARILVVDDIPANAKLLEARLSAEYFDVLTASSGAQALEICARSECDIILLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + + IPV+ VTA D R + G + +++KP++ + + ++ Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVADVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ + + + EAL A D++I+ + L++ GL Sbjct: 157 RILLVDDRPSSFERMAQVLSSE-HTVDVEPDPAEALFHAADGDYDLLIVSLGLEDFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++A+ A A R + G Y+ +P+ + + Sbjct: 216 LCSQARSLERTRHLPILAI-ADADNNTRLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|294645151|ref|ZP_06722874.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294807005|ref|ZP_06765824.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292639482|gb|EFF57777.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294445704|gb|EFG14352.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1397 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++EDNE ++L L++ Y NG E + + D+I+ D+ + E+ G+E Sbjct: 1143 VLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDGIEF 1201 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K + E+ IPVI +TA + D + G +A+ISKP +L + I+ + Sbjct: 1202 CKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLL 1257 >gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D +++ + + + + NG AL PD++++D+ L + GL Sbjct: 2 KILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLMLPDTDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E S IP+I +TA + + D + G + Y+ KP S + I+ + + Sbjct: 62 VCRKIRESS---NIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRRS 118 >gi|237715359|ref|ZP_04545840.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405201|ref|ZP_06081751.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229444668|gb|EEO50459.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356076|gb|EEZ05166.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1384 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++EDNE ++L L++ Y NG E + + D+I+ D+ + E+ G+E Sbjct: 1130 VLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDGIEF 1188 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K + E+ IPVI +TA + D + G +A+ISKP +L + I+ + Sbjct: 1189 CKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLL 1244 >gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes Clip81459] gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-064] gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-175] gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816] gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220] Length = 236 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|104783427|ref|YP_609925.1| response regulator ColR [Pseudomonas entomophila L48] gi|95112414|emb|CAK17141.1| response regulator ColR [Pseudomonas entomophila L48] Length = 227 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL S4-171] Length = 240 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK+++++ ++P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 67 VTKKLRQNKV--DVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123 >gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] Length = 234 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + + GY G E LEL + D++++D+ L + G Sbjct: 1 MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E S +P+I +TA + + D+ + G + YI+KP S + ++ + Sbjct: 61 TALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 457 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + +G AL + +++ D+I++DI + I Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ L + AL A + D++I++ + L + Sbjct: 158 VLLVDGRANSQERIVKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +P++ +T R G YI +P+ + + I Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274 >gi|294777639|ref|ZP_06743090.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294448707|gb|EFG17256.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1374 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ R L + Y + NG E + +AR+ PD++I D+ + ++G E Sbjct: 1114 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 1172 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KED + IP+I +TA + + + G + YI KP + I +K+ I Sbjct: 1173 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1229 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + + GY +G EAL++ R KPD++I+D+ + + G Sbjct: 12 RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGFT 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E E ++PV+ +TA D + + G + Y++KP SL+ + ++ + + Sbjct: 72 LLRRLRE--ERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRS 129 >gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + Sbjct: 1 MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|153868803|ref|ZP_01998544.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074620|gb|EDN71457.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 326 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M KK ++IV+DN N+ + +I +GY+ +G+EAL ++ P +I++DI + + Sbjct: 1 MKKKPTILIVDDNPTNLGVLGSIIAENGYLPGFATSGIEALAYLKEKHPKLILLDIMMPD 60 Query: 59 ISGLEITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G E+ +++++++ L IP+I +TA K D + G Y++KP + + + I Sbjct: 61 MDGFEVCRRLRQNATLAANIPIIFLTAKTEKEDVITGLELGAVDYVTKPFNKNELLTRIN 120 Query: 118 KYI 120 ++ Sbjct: 121 THL 123 >gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] Length = 235 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++V+D E +KL + G+ NG +AL LA D I++DI L ++ Sbjct: 1 MTKQVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GMEVCKRLRAKGV--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 224 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V+IV+D E L +E +G+ L+ +G EAL L QH D +++D+ + + Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +I+E S ++P++ +TA + D+ + K G + YI KP S + ++ Sbjct: 61 DGFAVCARIREQS---DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + + E GY ++G+EAL + + +I++DI + +++ Sbjct: 1 MDIKILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIMMPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I++ + PVI +TA + D+ + G + Y+ KP S+ + +K + Sbjct: 61 GFDTLKEIRKSHKT---PVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|265755299|ref|ZP_06090069.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263234441|gb|EEZ20031.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1344 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208 >gi|237724088|ref|ZP_04554569.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437548|gb|EEO47625.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1344 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208 >gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++I +D+ +L ++ GY ++ +G A+E+ + D++++DI + ++ Sbjct: 1 MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ Q +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRTK---QNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + +GY + R+G EA+ +++DI + + G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ NG EAL+ A + +PD+ ++D+ L ++ G Sbjct: 8 ARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ S + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 68 TVTRRLR--SAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125 >gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + GY + NG EAL K D+I+MDI + +I Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I+ L IP+I +TA + D+ + GC+ YI+KP L + + Sbjct: 61 GFEAIKRIR---RLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 233 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + GY + NG EAL+ R + ++I+MDI + ++ Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I+ L IP+I +TA + D+ + GC+ YI+KP L + + Sbjct: 61 GFEAIKRIR---RLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|186683964|ref|YP_001867160.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186466416|gb|ACC82217.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 440 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ + D++ G+ + +G AL+ A + PD+I++D+ + I G E Sbjct: 18 ILVVDDTTTNLGIVFDILTNVGFKVVTENDGSRALKQAEEQLPDLILLDVMMPGIDGFET 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++KE+S +IPVI +TA + + R G YI+KP + + IK ++ Sbjct: 78 CKRLKENSATYDIPVIFMTANSDTNSKVRGLNIGAVDYITKPFNEEELLARIKTHL 133 >gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 226 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D ++ + + GY +NG EAL+ A QH+P +I++D+ + + Sbjct: 5 MSHRILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+ED +L++ V+ ++A + + G + Y++KPI + + + ++ + Sbjct: 65 GAQTCRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAIL 124 Query: 121 GE 122 Sbjct: 125 KR 126 >gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 228 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN+ + + +E G+I +G E L+LA + D II+DI L +SG+E Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ D E ++P++ +TA + G + Y+ KP L + ++ I Sbjct: 62 ICRFLR-DEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRR 119 >gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] Length = 240 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D + ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 14 ARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 74 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 Query: 123 A 123 A Sbjct: 132 A 132 >gi|170077528|ref|YP_001734166.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC 7002] gi|169885197|gb|ACA98910.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC 7002] Length = 376 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ L ++ GY +G L+LA +PD+II D + E++G Sbjct: 1 MPQILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIATRPDLIISDWMMPEMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + +K+ +L I ++A D+ G + ++ KPIS ++ + Sbjct: 61 IEVCQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISSHELEARVRSGLR 120 >gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1387 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV+IV+D+ N+ +E G L NG + + L + D+++MD+ + + G Sbjct: 1264 RKVLIVDDDVRNIFALTSALEREGMQVLYAENGSDGIALLERTPGIDMVLMDVMMPGMDG 1323 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T I+ +E+P++A+TA AM+GD E+ + G YI+KP+ + ++ ++ Sbjct: 1324 YEATAAIRRQVRFKELPIVALTAKAMRGDREKCLEAGASDYITKPVDTEQLLSLLRVWLS 1383 Query: 122 E 122 Sbjct: 1384 R 1384 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ DL T G+ A+ L R +P +++DI L + G + Sbjct: 999 LIIEDDANFARILGDLARTHGFKAVVALGSETGLAAVRDLQPHAVLLDIHLPGMDGWTVL 1058 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 ++K D E + IPV ++ D +R + G A + KP+ Sbjct: 1059 DRLKHDPETRHIPVHLLS----VDDAGQRGLQSGAVACLKKPVDSEQMAA 1104 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 47/103 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++++ED+E +LI + EAL L + D +++D+ L + G Sbjct: 1118 KNLLVIEDDEAQRTSIVELIGGGDVRSQAVATAQEALALLQSEPFDCVVLDLGLPDADGQ 1177 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 + QIK ++ +PVI T + +ER K EA I K Sbjct: 1178 ALLGQIKGSADPWNLPVIVYTGRDLTPQQERDLKRRVEAVIVK 1220 >gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L] gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1] gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI] gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L] gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1] gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 238 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 66 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 122 >gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 230 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|255037318|ref|YP_003087939.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950074|gb|ACT94774.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 228 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++ VED+ +D +E Y + +G EAL+ + D+ ++DI L + Sbjct: 1 MKKRILYVEDDPNLAFATKDNLEQYDYEVVHATDGAEALDFFGKEHFDICVLDIMLPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ ++P++ ++A +M+ D+ + K G + YI+KP S+ I ++ Sbjct: 61 GFTLAEKIRASD--SQVPILFLSARSMQDDKIKGLKLGADDYITKPFSIEELKLRIDVFL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|149197475|ref|ZP_01874526.1| response regulator [Lentisphaera araneosa HTCC2155] gi|149139493|gb|EDM27895.1| response regulator [Lentisphaera araneosa HTCC2155] Length = 223 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED R ++ G+ +A E ++ ++II+DI L + +G Sbjct: 1 MPKILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYLAENTINLIILDIGLPDGNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ Q IPVI +TA + + D + G + Y++KP S IK + Sbjct: 61 FDFCRKLRAS---QNIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L + + +GY A G AL+ R +PD+I++DI L + G EI Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PISLSIFMETIKKYIGE 122 +Q++ ++PV+ +TA A + D R + G + YI K P S + +K + Sbjct: 78 CRQLR---TFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRR 133 >gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 227 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + + ++ GY +G+ L R+ P+++++D+ L + G+E+ Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLMLPVMDGIEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +P++ +TA D+ G + Y+ KP S+ + I+ ++ Sbjct: 69 ARRIRK---TSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123 >gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D +++ + +E G+ + NG L+ ++ KP+++I+D+ L IS Sbjct: 1 MDKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I++ +P++ +TA + D+ G + Y++KP S + +K + Sbjct: 61 GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D ++ + +E GY + NG EA+E ++ P +II+D+ L +ISG Sbjct: 6 KKILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESYKEFNPHLIILDLMLPDISGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K+I+++S +P+I +TA + G + Y+ KP S + + + Sbjct: 66 EICKRIRKNS---SVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRR 122 >gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] Length = 223 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D + +L + G+ L+ NG EAL++ D+ I+D+ + + Sbjct: 1 MKPRVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +KE ++IPVI +TA D+ R G + Y+ KP + M +K + Sbjct: 61 GFELVENLKE---FKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|186681898|ref|YP_001865094.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464350|gb|ACC80151.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 374 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D N+ L + ++E+ GY +G++AL + PD+I++D+ + + G E Sbjct: 11 RILAVDDTRDNLILVQAILESEGYEIDLVSDGIKALRQVEKSPPDLILLDVMMPGMDGYE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ + + IP++ +TAF + G + +I KP + ++ + Sbjct: 71 VTRRIRNNPAISYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLR 127 >gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1299 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 49/116 (42%), Positives = 81/116 (69%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I EDNE N+K D + + GY + +NG EA+ A+++ P +I+MDIQ+ ++ G+E Sbjct: 1172 ILIAEDNETNIKTIWDYLLSKGYRLILAKNGWEAISQAKEYHPQLIMMDIQMPDMDGIEA 1231 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+I+++ + +EIP+IAVTA AM GD+E+ G + YISKP+SL + TI++Y+ Sbjct: 1232 IKRIRDNQKTREIPIIAVTALAMPGDKEKCLGAGADEYISKPVSLKNLVSTIQQYV 1287 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I+ED+ ++ I G L G ALE Q P VII+D+QL ++SG ++ Sbjct: 1031 VLIIEDSITAAEVISRYIREIGLQTLTYPEGEGALEQVIQVNPGVIILDLQLPKVSGWKV 1090 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q+K + Q IPV+ ++ + + + + G Y+ KP+S + TI K +G Sbjct: 1091 LAQLKAHPQTQHIPVMILS---VVDERSQALEMGASEYLVKPVSRQLLRSTISKILGR 1145 >gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED +L RD +E S + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|120434408|ref|YP_860117.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117576558|emb|CAL65027.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 1352 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN+ K L++ ++ NG EALE Q++PD+II DI + + G+ + Sbjct: 1108 ILIVEDNKEIRKYISGLLKPY-CRVIEVENGKEALEEITQNQPDLIISDIMMPIMDGVSL 1166 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+++K +E IPVI +TA A + G +AYI+KP + + M IK + Sbjct: 1167 TRKLKTSTETSHIPVILLTARATSIQRMEGYETGADAYITKPFNEEMLMIRIKNLLR 1223 >gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 232 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + + +GY+ + +G EAL+ + PD++++DI L I G E Sbjct: 7 KILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLPGIDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I + E VI +TA D+ + G + YI KP + IK + Sbjct: 67 VCQHICA--TMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRR 123 >gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V+IV+D E L +E +G+ L+ +G EAL + + D I++D+ + Sbjct: 1 MSERTVLIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSVDAILLDVMMPNQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +I+E S ++P++ +TA + D+ + K G + YI KP S + ++ Sbjct: 61 DGFSVCARIREQS---DVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|118590176|ref|ZP_01547579.1| Response regulator receiver [Stappia aggregata IAM 12614] gi|118437148|gb|EAV43786.1| Response regulator receiver [Stappia aggregata IAM 12614] Length = 123 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 89/123 (72%), Positives = 107/123 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY LQTR G+EAL+LAR+H PD+I+MDIQL E+S Sbjct: 1 MAKSVLIVEDNELNMKLFHDLLEAHGYNTLQTRTGIEALQLAREHHPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED ++ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ET++ Y+ Sbjct: 61 GLEVTKWIKEDEDIASIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVAKFLETVRAYL 120 Query: 121 GEA 123 GEA Sbjct: 121 GEA 123 >gi|186685939|ref|YP_001869135.1| response regulator receiver modulated PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186468391|gb|ACC84192.1| response regulator receiver modulated PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 294 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY + NG AL+ A+ PD+I++DI + E++G E+ Sbjct: 37 ILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAPPDLILLDIMMPEMNGYEV 96 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K ++IPVI ++A D+ + G YI+KP S ++ + Sbjct: 97 CQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSEEEVFARVENNL 152 >gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IV+D + + + GY+ +G++ALE + P++I++D+ + + GL Sbjct: 11 ARILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDVLMPRMDGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +PV+ +TA GD G + Y+ KP L + I+ + Sbjct: 71 TAARRLRATGVT--VPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128 Query: 123 A 123 + Sbjct: 129 S 129 >gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 227 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + + + G+ +G+EAL++ + KPD+I++D+ L +SG E+ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I++ + P+I +TA + D+ + G + YI+KP S IK + + Sbjct: 65 MKKIRQKN---NTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRS 120 >gi|315919295|ref|ZP_07915535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693170|gb|EFS30005.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1347 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDNE + L R ++ Y L +NG+EALE+ ++++ D+I+ D+ + E+ GLE Sbjct: 1096 RLLLVEDNEELLYLMRRILSKHYY-VLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1154 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +K + + IP+I +TA D G AYISKP L + I ++ E Sbjct: 1155 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1213 >gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 233 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+E +L + Y +G AL KP++I++D+ L I G Sbjct: 5 QRILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I++++ +P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCREIRKNN---NVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRR 121 >gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134] Length = 1284 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDNE+N ++ L++ +G NG ALEL D+++MD+Q+ + G Sbjct: 927 ARVLLVEDNEINREVATHLLQQAGITPDTAENGAIALELLAVQDYDLVLMDMQMPVMDGF 986 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+ + L +PV+A+TA A+ D R G + +I+KPIS + F T+ +++ Sbjct: 987 EATRHIRANPRLASMPVVAMTANALPEDRNRCLAAGMDDHIAKPISPATFFTTLHRWL 1044 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 +++++V+D+ ++ ++ G+ A + +G +AL + + +D ++ Sbjct: 778 RRLLVVDDHGYARQVIGSMLRGFGFRADEVESGEKALSAIQHADAIADPYHAVFIDWRMP 837 Query: 58 EISGLEITKQIKEDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G++ +++ S + P + +TA + + G E + KP+S S+ + Sbjct: 838 GLDGIQTVRKLAAMSLQSQRPRPLMITANGREEVVREGERNGFETTLHKPVSPSVLFDAT 897 Query: 117 KKYI 120 + + Sbjct: 898 MRVL 901 >gi|29345677|ref|NP_809180.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337569|gb|AAO75374.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1370 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L ++ Y L ++G+EAL + + ++ D+II D+ + E+ GLE Sbjct: 1123 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1181 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + E IP+I +TA D G + YISKP L I I +I Sbjct: 1182 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFI 1238 >gi|54302690|ref|YP_132683.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9] gi|46916114|emb|CAG22883.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9] Length = 617 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 67/122 (54%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED+ N + + ++ +G+ + NG EA+ D+I+MD+Q+ E++G Sbjct: 489 ATILLVEDSPSNQMIAKAILAKNGFNVVTANNGKEAVAALENTNYDLILMDLQMPEMNGF 548 Query: 63 EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E I+ + +IP+IA+TA + D+ + G + +++KPI+ +E + ++G Sbjct: 549 EACTCIRNLHNNKSDIPIIAMTANVSQQDQVQCFSVGMDDFLTKPINKIKMLEVLHHWLG 608 Query: 122 EA 123 + Sbjct: 609 RS 610 >gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 258 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED++ +L +E G+ + +G+ LA Q+ PD+I++D+ L ++ Sbjct: 1 MKPSILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRGQALAMQYTPDLILLDLMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D IP++ +TA D+ G + Y++KP L +K + Sbjct: 61 GLTLCQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] Length = 221 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+VED + +E G+ NG EAL L + PD+I++D L +SG+E+ Sbjct: 1 MLVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWMLPNVSGIEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K S+ + +P+I ++A + + D R + G + Y+ KP S++ M ++ + Sbjct: 61 RQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRR 117 >gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I+ED +L RD +E SG+ + +G E LE A D++++D+ L + G Sbjct: 1 MGKVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++I+ +EIP++ V+A D+ R G + Y++KP S S + +K +I Sbjct: 61 YEICRRIRA---TKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHIN 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|253567663|ref|ZP_04845074.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841736|gb|EES69816.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1348 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L ++ Y L ++G+EAL + + ++ D+II D+ + E+ GLE Sbjct: 1101 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1159 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + E IP+I +TA D G + YISKP L I I +I Sbjct: 1160 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFI 1216 >gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 220 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + + +E Y +G LE A + D+I++D+ L I+G Sbjct: 1 MTKILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +QI+++ Q P+I +TA + D+ G + YI KP + + I+ + Sbjct: 61 LEICRQIRQN---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] Length = 241 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + +G EA ELA ++ I++D+ L E+ Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E++ +++E ++ P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GIEMSSKLREH---KDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IVED + + + GY NG + LE P +I++D+ L Sbjct: 1 MSYRVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+ S +P++ +TA + D+ + G + Y++KP + IK + Sbjct: 61 GFSVCKEIRSQS---SVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 224 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED L RD + + + NG E L + K D++I+DI + + Sbjct: 1 MKKSILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++++E + +PVI +TA + + D+ + G + YI+KP S + + +K + Sbjct: 61 GMTMLEKLRE---VSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED +L +E G+ L +G+ LE AR++ PD+I++D+ L ++G Sbjct: 1 MHTILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNPPDLILLDLMLPGMAG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K +K + + IPVI +TA + D + G + YI KP S M +K + Sbjct: 61 TEICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 256 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +D +L R +E G I + G + LE Q K D++I+D+ + + G Sbjct: 34 RVLVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKYDLLILDLMMPDGDGWT 93 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++P+I +TA + D + G + Y++KP S + +K + A Sbjct: 94 VCREVRRE---MDLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRA 150 >gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Sphingobium chlorophenolicum L-1] Length = 722 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+IV+DN N+ + D +E +G + G EAL+ A+ +PD+I++D+ + I G Sbjct: 13 RTVLIVDDNPANLGVIVDHLEDAGLHVSVAQGGEEALKRAQFIQPDLILLDVMMPGIDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++K + +EIPVI +TA D+ G Y+SKP + + + ++ Sbjct: 73 ETCRRLKANEATREIPVIFMTALDDIHDKVAAFAAGGVDYVSKPFQVEELLARVITHL 130 >gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 227 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E + ++E G+ +G AL +H D++++D+ L +SG Sbjct: 1 MTRLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRALRQKS---SVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q + D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 223 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++VED+ ++ ++++ SGYI +G+ +E+ ++K D+II+DI L +I Sbjct: 1 MEKKILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I++ S ++P+I +TA + DE + + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKKS---DVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 226 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ ++ ++ G+ + +G A+E A + +PD+I++D+ L ++ Sbjct: 1 MPQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I + I++DS +P+I +TA D + G + Y++KP + I+ + Sbjct: 61 GIDICRAIRQDSA---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] Length = 225 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + +GY + R+G EA+ +++DI + + G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes] gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] Length = 240 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 67 VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123 >gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 233 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E +L R +E +G+ + +G ALE+A + VI++D+ L E+ G E Sbjct: 5 KILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPELDGRE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q+++ ++ PVI +TA + + + G + Y+ KP S + +K I Sbjct: 65 VCAQLRKQ---KDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKR 120 >gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621] gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621] gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] Length = 217 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D + ++ R + +GY RNG E L+ A H+P +I++D+ + + Sbjct: 1 MSHRILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAHRPHLILLDVMMPTMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E + ++ D L+E V+ ++A + + G + YISKPI + + I+ + Sbjct: 61 GIETCRALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRIQAIL 120 Query: 121 GE 122 Sbjct: 121 KR 122 >gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 428 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+DN N+K+ + I SG+ L +G A++ + PD+I++D+ + + G Sbjct: 9 ATILIVDDNPTNLKVLSEAIANSGWEILVATDGETAIDQSEYATPDLILLDVIMPVMDGF 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++K + EIPVI +TA D+ + G YI+KP + +K ++ Sbjct: 69 ETCRRLKSNPATNEIPVIFMTALNDTVDKIKGLSLGAVDYITKPFQTEEVLARLKVHL 126 >gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E +L +D +E S + +G + L+ A D+ I+D+ L I G Sbjct: 1 MSRILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+E ++ +P++ VTA + D+ R G + YI+KP S S + +K ++ Sbjct: 61 FELCKRIRE---VKNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4] gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4] Length = 457 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + L +G++AL++ + + DV+++D+ + I Sbjct: 2 MTARILVVDDVPANVKLLEARLLAEYFEVLTAEDGLKALDICDRTQVDVVLLDVMMPGID 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 62 GFEVCERLKSSPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLISRVKSLV 121 Query: 121 G 121 Sbjct: 122 R 122 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ + + AL A + D++I++ L++ L + Sbjct: 159 VLLVDSRASSQERIIKALKPV-ADVVAMSDAQAALFEAAESNFDLVIVNGTLEDYDPLRL 217 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + IP++ + + R G YI +P+ + + + Sbjct: 218 CSQLRSLDRTRFIPILLIADQGEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRR 275 >gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 228 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ L +E G Q N +EAL + D+II+DI + E+ G+E Sbjct: 5 ILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIMMPEMDGIEA 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E+ Q +P+I ++A + D+ + G + YISKP + + +K ++ Sbjct: 65 CMKIREE---QHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRR 119 >gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pasteur 52237] gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pasteur 52237] Length = 235 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 3 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122 Query: 121 GE 122 Sbjct: 123 RR 124 >gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 235 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D E ++L + G+ +G +AL LA D I++DI L ++ Sbjct: 1 MTKQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRLRAKGI--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED +L RD +E S + +G L+ A Q D+II+DI L +++G Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 233 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40] Length = 1526 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 ++IV+D +N K+ + + Y + R+GMEA+ R D+I++DI + ++SG Sbjct: 1145 HILIVDDEPVNRKVLANYLSLKYYTVHEVRSGMEAITYVRNGPKVDLILLDIMMPKMSGY 1204 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E KQ+++ E+P+I +TA + D G +I+KPI+ + + ++ Sbjct: 1205 EACKQLRQQYSANELPIILLTARSQVSDLVTGFNSGANDFITKPIAKEELLARVHTHL 1262 >gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+++VED+ +L + GY T +G EA+ LA + PD+II+D ++ Sbjct: 1 MSAAKLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGT 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ D E +P+I +TA + D R + G + Y++KP S + + Sbjct: 61 SGIEVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAV 120 Query: 120 IGE 122 + Sbjct: 121 MRR 123 >gi|148546293|ref|YP_001266395.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148510351|gb|ABQ77211.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 260 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + + SG+ +G D++I+D+ L + G Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144 Query: 123 A 123 + Sbjct: 145 S 145 >gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 60/117 (51%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ +L +E GY +G ALE RQ +PD++++D L ISGLE+ Sbjct: 7 LVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWMLPGISGLEVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ + +P++ ++A + D R G + Y+ KP S+ +K + Sbjct: 67 RQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123 >gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 225 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + R + +GY L +G+EA+E R P+++I+D+ + + GLE Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + ++ +TA D G + Y+ KP +L + ++ + A Sbjct: 62 VCRTLRSEGWDRS--ILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119 >gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 259 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VED+ ++ + +G+ +G + L R D+I++D+ L + Sbjct: 34 MDGRVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLPGLD 93 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++I+ + +P++ +TA D + G + Y+ KP L + ++ + Sbjct: 94 GLQVCREIRRSNA---VPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLL 150 Query: 121 GEA 123 A Sbjct: 151 RRA 153 >gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 235 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D E ++L + G+ +G +AL LA D I++DI L + Sbjct: 1 MTKQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+++ + + P++ V+A + + D+ + G + Y++KP S + +K + Sbjct: 61 GIEVCKRLRAKAI--KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|255691944|ref|ZP_05415619.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622353|gb|EEX45224.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1348 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L ++ Y L +NG+EAL++ + ++ D+II D+ + E+ GLE Sbjct: 1101 HLLLVEDNEELLYLMEKILSRQ-YHVLVAKNGLEALDIIKDNEIDIIISDVMMPEMDGLE 1159 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK + E IPVI +TA D G + YISKP L I I +I Sbjct: 1160 LCRNIKSNLETSHIPVILLTAKNTAEDRIECYNAGADGYISKPFELKILEARINNFI 1216 >gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L + SGY ++ +G EAL++ ++ ++I+DI + ++ Sbjct: 1 MNNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++E IP++ ++A + D+ + G + Y++KP + +K I Sbjct: 61 GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2476 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 KKV++V+D+ N+ ++E G + NG A+E+ QH+ D+++MD+ + E+ Sbjct: 2355 SKKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMD 2414 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G E + I++D + +P+IAVTA A+K D E+ G Y+ KP+ +E I+ Sbjct: 2415 GYETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2471 Score = 98.3 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 7/120 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED+ ++ + G+ AL G L +A + +P I +DIQL + G + Sbjct: 2090 LLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMANEFQPHAITLDIQLPVVDGWSVL 2149 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKYIGE 122 ++K + IPV ++ D+ + G Y++KP+S L + ++ Sbjct: 2150 DRLKRSPRTRHIPVHVIS----VMDKHQGNSQGAFGYLTKPVSKEGLERVFNQLASFLER 2205 Score = 82.1 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 17/122 (13%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQT-RNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VED+++ L+ G + + G E L+ + D +++D+ L + G Sbjct: 2208 RRLLLVEDDDVQRDSLVKLLSEGGDVVVTAVATGEEVLQSLETGEFDCVVIDLMLPDTDG 2267 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA-MKGDEER--------IRKGGCEAYISKPISLSIF 112 + + +++K + +++P++ T DE R I K G +K S Sbjct: 2268 IRLVEEVKTQNRFRDLPIVIYTGKELTPKDEARLRRYTGSVILKSG-----TK--SPEQL 2320 Query: 113 ME 114 + Sbjct: 2321 LS 2322 >gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 232 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK+++V+D + ++ R + GY + +G EA L + PD++++DI L + G Sbjct: 3 SKKILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIMLPKKDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+ + +P+I +TA + D + G + Y++KP S + +K + Sbjct: 63 FAVCRDIR---RVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|254446246|ref|ZP_05059722.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260554|gb|EDY84862.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 378 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++V+D +N++L + +E G L NG L++A+ +PD+I++D+ + + G Sbjct: 15 RTVLVVDDEPINIQLLQRKLEWDGITVLTATNGEACLKVAKAERPDLILLDVMMPGMDGF 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++ED + IPVI VTA K + + G YI+KPI L + ++ + Sbjct: 75 AVCAKLREDKRTKAIPVIFVTAHNSKKGKLEGLEAGAVDYITKPIDLDETIARVRTQL 132 >gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 226 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ + R + +G+ + +G ALE A +PD+II+DI + E+ GLE+ Sbjct: 2 ILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIGMPEMDGLEV 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ ++P++ +TA A + D + G + Y+SKP S + ++ + + Sbjct: 62 CRALRK---TSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRS 117 >gi|90414215|ref|ZP_01222196.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK] gi|90324765|gb|EAS41303.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK] Length = 488 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED+ N + + ++ +G+ NG EA+ D+I+MD+Q+ E++G Sbjct: 360 ATILLVEDSPSNQMIAKAILAKNGFNVATANNGKEAVAALENTSYDLILMDLQMPEMNGF 419 Query: 63 EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E I++ + +IP+IA+TA + D+ + G + +++KPI+ +E + ++G Sbjct: 420 EACTYIRDLHNNKSDIPIIAMTANVSQQDQVQCLSVGMDDFLTKPINKIKMLEVLHHWLG 479 Query: 122 E 122 Sbjct: 480 R 480 >gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2] gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2] Length = 218 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+V+D + + L + Y+ + NG +ALEL ++ D++++DI + ++ G E+ Sbjct: 1 MLVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKESFDLVLLDIMMPDMDGWEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + I++ +IP+I +TA + D + + G + Y++KP + ++ + + Sbjct: 61 RDIRK---FSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRRS 115 >gi|313901404|ref|ZP_07834874.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] gi|313468332|gb|EFR63776.1| response regulator receiver protein [Thermaerobacter subterraneus DSM 13965] Length = 144 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D +K R +E +G+ +G +ALE D+II+D+ L E+ Sbjct: 1 MSERILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGGIDLIILDLMLPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +++++ ++P+I +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLTVCREVRK---TSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED+ + R +E GY +G+ L R +PD++++D+ L ++ G+ Sbjct: 6 AHILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLMLPKLPGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ +SE +PVI +TA + D G + Y+SKP S + + + Sbjct: 66 EVCRALRIESE---VPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida subsp. salmonicida] Length = 231 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L +++ G+ +G E L + +++++D+ + ++G Sbjct: 1 MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRLAEQDFNLVLLDVMMPRLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++E + PV+ +TA D + G + Y++KP + I+ + Sbjct: 61 FAMLAKLRE---THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 238 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+ + +VED +L + +E +G+ NG + LE + PD+ I+DI L I Sbjct: 1 MSKQLIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ + +K+++ + IP+I +TA + + D+ + G + YI+KP S+ + +K Sbjct: 61 DGLEVCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKAL 120 Query: 120 IGE 122 Sbjct: 121 FRR 123 >gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12] Length = 255 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + + GY A G EA EL + + D++++D+ L ISG Sbjct: 21 MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISG 80 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ EL+ +P+I VTA + + D + G + Y++KP S + I + Sbjct: 81 TTLCRRM---HELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLR 137 Query: 122 EA 123 + Sbjct: 138 RS 139 >gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] Length = 229 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum] Length = 1361 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 74/125 (59%), Gaps = 2/125 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ EDN +N +L L+E G+ NG++A+ + D+I+MD+Q+ +S Sbjct: 1127 MAAEILLAEDNIVNQRLAVRLLERFGHRVTLAENGLQAVAASETKDFDLILMDVQMPHMS 1186 Query: 61 GLEITK--QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G E T +I+E + + P+IA+TA A++ D E+ + G + Y+SKPI+ I+K Sbjct: 1187 GFEATNTIRIREKALNKHTPIIAMTAHALQKDREKCLEAGMDDYLSKPINADQLRSQIEK 1246 Query: 119 YIGEA 123 ++G A Sbjct: 1247 FLGAA 1251 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-----ARQHKPDVIIMDIQLQEIS 60 +I++DN+ K+ ++ G A + A L R+H + I MD QL Sbjct: 984 LIIDDNKTTRKVLLQMLGEYGISADSADSAETAFRLLRAASLRKHPYECIFMDAQLNGRD 1043 Query: 61 GLEITKQIKEDSELQEIPVIAVT-AFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G + + IK+D+ + + + + +GD E R Y++KPIS +E ++ Sbjct: 1044 GFLVAEAIKQDTTIGDASIFMMICGSGQRGDPEN-RSSVISGYLTKPISPLEMLEALQ 1100 >gi|319640566|ref|ZP_07995286.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A] gi|317387843|gb|EFV68702.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A] Length = 1350 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1100 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1158 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1159 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1214 >gi|254882381|ref|ZP_05255091.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254835174|gb|EET15483.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1344 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + R Y + ++G E ELA+ P++I+ DI + + G+E+ Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKED IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLL 1208 >gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 236 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED ++ + +GY + +G AL+L + +PD++++D L ++ G Sbjct: 1 MTTILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWMLPQVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++++S PV+ +TA + + D + G + Y++KP S+ + ++ + Sbjct: 61 LEVLRRLRQESPT---PVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 684 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ GY + +G +AL PD+I++DI++ E+ G E+ Sbjct: 13 ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPPDLILLDIKMPEMDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + EIPVI ++A D+ + + G YI+KP L + +K + Sbjct: 73 CQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEEVIARVKTQL 128 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ L++ GY A NG E L+ + DVI+MD+Q+ E+ GL Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISRQSYDVILMDVQMPEMDGLT 621 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IGE 122 T+ I ++ + +IA+TA AM+ D E K G + YISKPI + + K + + Sbjct: 622 ATRYICQNYSQRPW-IIALTANAMQEDRETCLKAGMDDYISKPIRQADLIRVFKMIPLRQ 680 Query: 123 A 123 A Sbjct: 681 A 681 Score = 89.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K+V+I++DN + ++ + G IA T++G EAL ++ DV I+D Q+ E++G Sbjct: 416 KRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWLNQKEAFDVAIIDRQMPEMNG 475 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + QI S +E+P++ +T + + + A + KPI L T+ + +G Sbjct: 476 LTLGLQIHNQSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQLYNTLTQVLG 535 Query: 122 E 122 Sbjct: 536 R 536 >gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 220 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I ED +L +L+E+SGY NGMEAL+L + D++I+DI + + G Sbjct: 1 MTHILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ + P+I +TA + ++ + G + YI+KP SL I + I+ I Sbjct: 61 FEVAQQVRK---TSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325] gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325] Length = 233 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E K+ + GY + +G +A++LA PD+I++D+ L E G+E Sbjct: 5 KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEKDGME 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP+I +TA + D+ + G + Y++KP S M +K + Sbjct: 65 VCREVRAQ---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 >gi|161524068|ref|YP_001579080.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341497|gb|ABX14583.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 305 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 65 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 124 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 125 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 182 Query: 121 GE 122 Sbjct: 183 RR 184 >gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841] gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box protein [Rhizobium leguminosarum bv. viciae 3841] Length = 457 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + + +G AL + +++ D+I++DI + I Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R K G + +++KP++ + +K + Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 80.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+ + + ++ L + AL A + D++I++ + L + Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +P++ +T R G YI +P+ + + I Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRR 274 >gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27] gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8] gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27] gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + + ++ GY +G+ L R+ P+++I+D+ L + G+E+ Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLMLPVMDGIEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ +P++ +TA D+ G + Y+ KP S+ + ++ ++ Sbjct: 69 AKRIRK---TSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRR 123 >gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ I Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLI 117 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY +G+EAL++ +PD +++D+ + + Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRQLRGTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K++IV+D + L + GYI L+ NG+EALEL + + +II+DI + ++ Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E +I+E+ + +P+I ++A + D+ G + YI+KP + + +K Sbjct: 61 DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] Length = 228 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 66/125 (52%), Gaps = 4/125 (3%) Query: 2 LKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 +KK +++V+D+ +++ + GY + +G++A++ A++ KP ++I+D+ + Sbjct: 1 MKKSDITILVVDDDPDILEILSYNLNAEGYKVITAEDGVQAVKKAKKKKPHLVILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E +QI+E L+ + +TA + G + YI+KP+ + M +K Sbjct: 61 EMDGIEACEQIRETKGLENTVITFLTARGEDYSQVAGFDAGADDYITKPVKPKVLMSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|86606963|ref|YP_475726.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555505|gb|ABD00463.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 344 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 68/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + L DL+E+ GY + NG +AL++ +PD++++D+ + + G E Sbjct: 28 HLLIVDDQPHSRLLLGDLLESIGYRVSEAENGQQALQMLPSLQPDLVLLDVMMPGLDGFE 87 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++IK D E + IPV+ + A + + + R + G + ++SKP S + ++ + + Sbjct: 88 VCRRIKADEETRLIPVVLIAAASDRKNRLRGIEAGADDFLSKPFDESELLARVRSLVRQ 146 >gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ I Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLI 117 >gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++D+ + R + G+ G E L LA KPD++++D+ + Sbjct: 1 MEAKILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++ +P++ +TA D + G + Y+ KP +L + I+ + Sbjct: 61 GWEVCRRLRA---GSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|119493875|ref|ZP_01624440.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] gi|119452387|gb|EAW33578.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] Length = 335 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++ ++ GY + NG AL A+ PD+I++D+++ ++SG E+ Sbjct: 13 ILIVDDTPNNLRFLSSMLLEHGYEVRKAINGQMALRSAQAEPPDLILLDVRMPDMSGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +KE E +EIPVI ++A + D+ + G Y++KP + +K +I Sbjct: 73 CHALKEKPETREIPVIFLSALDHEKDKVIAFEMGAVDYVTKPFQFQEVLSRVKTHI 128 >gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440] Length = 233 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ ++L + +G+ +G AL A++H+PD++++DI L ++ G Sbjct: 8 ARLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPDLDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++E PV+ +TA D+ R G + Y++KP SL I+ + Sbjct: 68 EVIRLLRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125 Query: 123 A 123 + Sbjct: 126 S 126 >gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L + GY LQ +G +AL +PD+ IMDI + + G Sbjct: 1 MAKILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIMMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ DS Q++P++ +TA + R + G + Y+ KP + +K + Sbjct: 61 WALCEALR-DSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLK 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +L + +G+ + NG +AL LA Q+ PD++++D+ L ++ G Sbjct: 12 ATLLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+++++ + +PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 72 TVTRRLRQ--AGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 129 >gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603] gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603] gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|220927156|ref|YP_002502458.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] gi|219951763|gb|ACL62155.1| response regulator receiver protein [Methylobacterium nodulans ORS 2060] Length = 126 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 86/122 (70%), Positives = 107/122 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY L+T NG+EA+ELARQH+PD+I+MDIQL E+S Sbjct: 1 MTKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARQHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED EL+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++ Y+ Sbjct: 61 GLEVTKWIKEDDELKSIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRTYL 120 Query: 121 GE 122 G+ Sbjct: 121 GD 122 >gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] Length = 240 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED + +E GY + +G A+E +H+ D++++D+ L +I G Sbjct: 6 KKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + ++P+I +TA D + G + Y+ KP S + ++ Sbjct: 66 RVCRTIR---DTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|260170975|ref|ZP_05757387.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1361 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDNE + L R ++ Y L +NG+EALE+ ++++ D+I+ D+ + E+ GLE Sbjct: 1110 RLLLVEDNEELLYLMRRILSKHYY-VLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1168 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +K + + IP+I +TA D G AYISKP L + I ++ E Sbjct: 1169 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1227 >gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603] gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 231 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++ ED+ ++ R +E +G+ + NG+ A +L + PD+ I DI + E++ Sbjct: 1 MSYKILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+TK+++ IP+I ++A D+ G + YI+KP + + ++ + Sbjct: 61 GFELTKRVR---ITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I EDNE N+ + GY + ++G +A++LA+ P++I+MDIQ+ I GLE Sbjct: 964 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1023 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +I++ + ++P+IA+TA AM GD E+ + G Y++KP+ L I++ + Sbjct: 1024 INRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1079 >gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 236 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK + IVED + +L R +E +GY +G E+ + KPD+ ++DI L + Sbjct: 1 MAKKLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI K+IKE+ +L++IP+I +TA + D + G + YISKP S+ F+ +K Sbjct: 61 DGFEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVA 120 Query: 120 IGE 122 Sbjct: 121 FRR 123 >gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + Sbjct: 3 MMPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 63 GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|116071491|ref|ZP_01468759.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|116065114|gb|EAU70872.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 259 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ L +E SG+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYIPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L IK + + Sbjct: 65 CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 >gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] Length = 224 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D + R + SGY+ NG E L +A+++ D+I++D+ + E+ G E Sbjct: 2 KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPELDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K + + Q IPVI +TA + D + + G + Y+ KP S + + I+ + Sbjct: 62 VMKTL----DAQNIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRR 116 >gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ I++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIENRNFKFILLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|167032026|ref|YP_001667257.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166858514|gb|ABY96921.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 241 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 55/121 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + + SG+ +G D++I+D+ L + G Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRRALESTPCDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 66 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++MIVED + + +ET G+ L +G + + H D+II+D+ L ++S Sbjct: 1 MKPRIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ KQI++ L+ +P+I +TA A + D + G + YI+KP S +K + Sbjct: 61 GFELCKQIRQ---LRSVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|332706446|ref|ZP_08426507.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332354330|gb|EGJ33809.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 121 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 70/121 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED+ ++ DL++ SG +G+EALE + PDV+++DI + ++G Sbjct: 1 MSKVLVVEDSLAQRQMISDLLKGSGLKVDVASDGVEALEHILESCPDVVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q +PV+ ++ + D + G +AYI+KP + + T+++ + Sbjct: 61 YEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMRQGADAYIAKPFQPTELIGTVRQLLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+ + +VED +L + +E +G+ NG + L + ++ PD+ I+DI L I Sbjct: 1 MSKQVIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ + +K+ + + IP+I +TA + + D+ + G + YI+KP S+ + +K Sbjct: 61 DGLEVCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKAL 120 Query: 120 IGE 122 Sbjct: 121 FRR 123 >gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D +++ + +E G+ + NG L+ ++ KP+++I+D+ L IS Sbjct: 1 MDKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I++ +P++ +TA + D+ G + Y++KP S + +K + Sbjct: 61 GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA K D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ ED ++ R ++ G+ L+ NG+EAL L +P +II+D+ + ++G E Sbjct: 7 RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E S +P+I +TA + D+ G + Y+ KP + + I+ + + Sbjct: 67 VCQRIREQSI---VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRS 123 >gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 233 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K V+I +D L + GY ++ NG EAL++ + D+ I+DI + +I Sbjct: 1 MKPITVLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+E +P+I ++A A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIREK---HHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ +DN + L+ Y +G+ AL+ AR PD+++ D+ + + G Sbjct: 642 SARILLADDNSDMRDYVKRLLSQQ-YEVESVADGLAALDSARGRVPDLVLTDVMMPGLDG 700 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ + + +++P+I ++A A + + G + Y+ KP S + ++ + Sbjct: 701 FGLLQELRANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAAL 759 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 68/120 (56%), Gaps = 2/120 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D++ + ++E +G + + EAL+ + +PD+++ DI + E G + Sbjct: 1295 ILVVDDDDDTREFHTFVLEQAGAKVMAVASAKEALQALAESEPDILLSDIGMPETDGYML 1354 Query: 65 TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + ++IP IA+TA+A + ++++ G + ++SKP+ ++ I IG Sbjct: 1355 MRQIRALQLKQAKQIPAIALTAYAGEINQQQAIASGFQRHLSKPVEPDELVKAIATLIGR 1414 >gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii DSM 4541] gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii DSM 4541] Length = 232 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL+ D++++D+ + + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ L + PVI +TA + D+ + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQ---LHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] Length = 222 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ L + + GY +G+E ++ +++ D+II+DI + + Sbjct: 1 MNSSILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I++ +P+I +TA + D+ + + C+ YI+KP S ++ ++ ++ + Sbjct: 61 GYGVCKMIRK---TSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] Length = 236 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 225 Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 118 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ NG EAL+ A + +PD+ ++D+ L ++ G Sbjct: 8 ARLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 68 TVTRRLRA--AGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125 >gi|237799640|ref|ZP_04588101.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022495|gb|EGI02552.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 140 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D ++ +E +GY ++ N +A + KPD+I++D L SG+ Sbjct: 4 RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +IP+I +TA + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1] gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1] Length = 232 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] Length = 229 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED +L RD +E S + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 219 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++++D+ + K+ +L+ +GY+ +G + L++ + +PD+I+ D+++ E+ G Sbjct: 1 MKRILVIDDDPILQKILENLLTQAGYLVAVVLSGKQGLDIWLEFQPDLIVSDVRMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E + I+ Q IP + +++ G + YI+KP + + I++ + Sbjct: 61 FEFCRYIRSQPTGQLIPFLFLSSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQLA 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|302334934|ref|YP_003800141.1| response regulator receiver protein [Olsenella uli DSM 7084] gi|301318774|gb|ADK67261.1| response regulator receiver protein [Olsenella uli DSM 7084] Length = 303 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 66/119 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++VED+ ++ L ++++ Y + +G AL+++++ PD+II+D+ L ++G Sbjct: 1 MKKILVVEDDPASLTLITEILKGYDYTVVSALDGRSALDVSKRENPDLIILDVMLPALNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ ++++ S+ + P+I +T R + G ++SKP + IK + Sbjct: 61 YQVCERLRSMSQFRNTPIIMLTVLNEDSQRIRALEAGANGFLSKPFKRVELLTRIKALL 119 >gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 223 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED L RD + G+ + +G E L + K D+II+DI + +++ Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E + +PVI +TA + D+ + G + Y++KP S + + +K + Sbjct: 61 GLEMLEKLRE---VSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] Length = 229 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED +L RD +E S + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED +L RD +E + Y+ +G E L+ A D+II+DI L ++G Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ + IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1001] gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1001] Length = 233 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 239 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59 + V++V+D L SG+ +G A E +Q K D++++D+ L + Sbjct: 1 MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++++++ +IP+I +TA + D + G + Y++KP S + + Sbjct: 61 DGLEVCRRLRQEGV--KIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAV 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 974 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 1 MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQ 55 M K +++V+D +N+++ + + Y +Q +G+EAL Q KPD++I+DI Sbjct: 572 MSKTGEFTILVVDDEPINLQVVTNHLSVHNYAIVQATSGIEALAKIEQGFKPDLVILDIM 631 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + ++SG E+ ++I++ E+P+I +TA D G Y++KPIS + Sbjct: 632 MPKMSGYEVCQKIRQCFPATEMPIILLTAKEQVSDLVEGLSLGANDYLTKPISKHELIAR 691 Query: 116 IKKYI 120 IK ++ Sbjct: 692 IKTHL 696 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 1 MLKKVMIVEDNEL----NMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQ 55 M K+++V+D + FR I + NG++ALE D+++ DI Sbjct: 1 MPAKILVVDDEPDLELLIRQKFRKKIRRQELQFIFAHNGVDALETLHAQPDIDMVLTDIN 60 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + E+ GL + + +D + ++A+ + + G +++KPI Sbjct: 61 MPEMDGLTLLTHLAQD--YPTTKAVILSAYGDMENIRKAMNLGAFDFLTKPIDFQDL 115 >gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp. AND4] Length = 1129 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 59/114 (51%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 + +D +N+++ + GY +G E L L Q KP+++++DI + +SG ++ Sbjct: 727 VADDEPVNLRILESFLRLEGYRVRTIADGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 786 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E + E+P+I +T + D + + G Y++KP + I+ ++ Sbjct: 787 KLREHFDHAELPIIMLTGMSQTEDRVKGFEAGANDYLTKPFNKQELAARIQAHL 840 >gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++V+D + ++ R + GY +G A E+ + PD++I DI + + Sbjct: 1 MIARILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + K+++ S+ +P+I ++ + + + G + YI+KP +++ + I+ + Sbjct: 61 GLALCKELRARSQ---VPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+E +L + Y +G AL + KP+++++D+ L I G Sbjct: 5 QRILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S PVI ++A D+ + G + Y+ KP + +K I Sbjct: 65 QVCREIRAKSGT---PVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRR 121 >gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B str. Eklund 17B] Length = 223 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED L RD + G+ + +G E L + K D+II+DI + +++ Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E + +PVI +TA + D+ + G + Y++KP S + + +K + Sbjct: 61 GLEMLEKLRE---VSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] Length = 240 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K V++VED E ++ R +E + ++ ALE+ RQ + D++I+D+ + Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G ++I+E E+P++ +TA + D + G + Y+ KP S + +K Sbjct: 61 LDGWTTCRKIRE---FSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKA 117 Query: 119 YIGE 122 + Sbjct: 118 LLRR 121 >gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 231 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+ +V+D +++ + +E G+ + NG L ++ KPD++I+D+ L IS Sbjct: 1 MGKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I++ +P++ +TA + D+ G + Y++KP S + +K + Sbjct: 61 GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4] gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4] Length = 1298 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VEDN + Y ++ NG + LE A +H+PD+II D+ + E+SG E Sbjct: 1052 KVLVVEDNAEFRMFIMGEL-MEKYHVIEAANGKDGLEKALKHQPDLIITDVMMPEMSGTE 1110 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +K++ + IPVI +TA + + G +AYISKP ++ I + I I + Sbjct: 1111 LCRLLKKNIQTSHIPVILLTAKTSDKAQIEGFEAGADAYISKPFNMDILLLRIHHLIEQ 1169 >gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273] gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 290 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++ ++ +GY + +G EALE+ + +PD++++D+ L + G Sbjct: 26 ATILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPRLDGF 85 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + YI KP S I + Sbjct: 86 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142 >gi|330986627|gb|EGH84730.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 484 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 360 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 419 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 420 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 478 >gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|302188712|ref|ZP_07265385.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae 642] Length = 783 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELISILDQWI 777 >gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] Length = 243 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 11 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 71 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 127 >gi|119486072|ref|ZP_01620134.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] gi|119456847|gb|EAW37975.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] Length = 582 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 61/116 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED++ + + ++E + + R+G LE A PD+I+ DI + ++ G Sbjct: 1 MIKILVIEDDKQVQENIQVILELEDFDVIVARDGQSGLEKAIASSPDLILCDIMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ ++ IP I +TA + + D + + G + Y++KP + ++ I+ Sbjct: 61 FEVLSALQSIEATSNIPFIFLTAKSDRDDLRQGMELGADDYLTKPFTPKELLKAIQ 116 >gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL J1-023] Length = 240 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 67 VTKKLRQDKVG--VPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123 >gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++ ED+ L R +E G+ L +G A++ R PD++++DI + ++ Sbjct: 4 MNARVLVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDETRSRHPDLLVLDIMMPKLD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + ++ DS+ +P++ +TA + + + G + Y++KP S ++ + Sbjct: 64 GMDVCRVLRSDSQ---VPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51] gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 237 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D++ ++L + E G+ + +G L + PDV+I+DI L GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ IP+I +TA + D + G + Y++KP S + IK + + Sbjct: 66 LCRRLRA---VRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRS 122 >gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 233 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E K+ ++ GY + +G A+ELA PD+I++D+ L + G+E Sbjct: 5 KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKKDGME 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP+I +TA + D+ + G + Y++KP S M +K + Sbjct: 65 VCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120 >gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 950 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 69/116 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE+N + DL+ + G NG EAL L + D I+MDIQ+ ++G + Sbjct: 720 ILLVEDNEINREFAHDLLTSKGLRVQVANNGQEALTLLTSNTYDAILMDIQMPMLNGYDA 779 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ + +P+IA+TA AM GD+E+ G +++KPI + +T+ +I Sbjct: 780 TRAIRQQEYHRNLPIIAMTANAMAGDQEKALDAGMNDHLTKPIKPDLLFQTLAHWI 835 >gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 228 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + L + + GY + +G EA+ + + PD+I++DI L + + Sbjct: 1 MNEKILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIMLPKKN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+I++ + P+I +TA D+ + G + Y++KP + IK ++ Sbjct: 61 GYDVCKEIQQKL---DTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + + ++ GY +G+ L R+ P+++I+D+ L + GLE+ Sbjct: 17 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ IP++ +TA D+ G + Y+ KP S+ + ++ ++ Sbjct: 77 ARRIRK---TSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 131 >gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D+ + ++L + E G+ + +G + L + + PDV+I+DI L G Sbjct: 4 MGKVLVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIMLPGKDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++E ++ IP+I +TA + D + G + YISKP S + IK + Sbjct: 64 LTLCRSLRE---IRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 230 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 MLKK++I+ED+ ++ RD +E G+ +G+E L A K D+I++D+ L I Sbjct: 1 MLKKILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++I+ +E +P++ VTA D+ R G + YISKP S + + +K + Sbjct: 61 GYEICRKIRGKTE---VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANL 117 Query: 121 GE 122 + Sbjct: 118 AQ 119 >gi|160884768|ref|ZP_02065771.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] gi|156109803|gb|EDO11548.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483] Length = 1320 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+DN + + + S + L NG EAL + +Q +++ D+ + EI G+ Sbjct: 1069 KTILLVDDNPEILNYLKKELGKS-FNILTATNGKEALGMLQQQNISLVVSDVMMPEIDGI 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+IK D L +P+I +TA AM E + G + YI KP +S IK + Sbjct: 1128 ELCKRIKTDHNLSHLPIILLTAKAMNLYIEEGFQAGADDYIVKPFKVSTLKIRIKNILNR 1187 >gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 225 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +L + +E GY +G E L + +PDV+++DI L + G+ Sbjct: 6 RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E PVI +TA GD+ G + Y++KP + + ++ + Sbjct: 66 VLRRLRE--AGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRR 122 >gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] Length = 240 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 14 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 74 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 Query: 123 A 123 A Sbjct: 132 A 132 >gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A] gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A] Length = 457 Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N++L + + + NG +ALE + + D+I++D+ + ++ Sbjct: 1 MSARVLVVDDIPANVRLLEARLSAEYFDVITASNGAQALETCARAECDIILLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R + G + +++KP+S + ++ Sbjct: 61 GFEVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ + + EAL A + D++I+ + L+ GL Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAIDIEPDPSEALFRAAESNYDLLIVSLGLENFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++AV G R + G Y+ PI + + Sbjct: 216 LCSQARSLERTRHVPILAVADVDDNGRLLRGLEIGVNDYLLLPIDKNELLA 266 >gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] Length = 223 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVED L RD + G+ + +G E L + K D+II+DI + +++ Sbjct: 1 MKKSVLIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E + +PVI +TA + D+ + G + Y++KP S + + +K + Sbjct: 61 GLEMLEKLRE---VSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED + + E GY +G ++ A + D++++DI L + Sbjct: 1 MKEKILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I+E+S +IPVI +TA D+ R G + Y++KP S+ ++ + Sbjct: 61 GYEVLKKIRENS---DIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAAL 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D++ ++L + E G+ + +G L + PDV+I+DI L GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ IP+I +TA + D + G + Y++KP S + IK + + Sbjct: 66 LCRRLRA---VRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRS 122 >gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D++ +L R +E GY LQT +G+EA+ L RQ +PD++I+DI L ++ GL Sbjct: 6 TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E P++ +TA A D G + Y++KP + + I+ + Sbjct: 66 VCQRVRE---FASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRR 121 >gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio splendidus 12B01] gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio splendidus 12B01] Length = 1129 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 I +D +N+++ ++ GY +G E +EL + KP+++++DI + +SG ++ + Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + ++P+I +TA D R + G Y+SKP + I ++ Sbjct: 787 ALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL 840 >gi|332711421|ref|ZP_08431353.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332349970|gb|EGJ29578.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 516 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ N+ + +L+ SG+ L ++G AL+ +PD+I++DI + I G E Sbjct: 33 IVIVDDSPTNLGVMFELLSNSGFKVLVAQDGYSALQKVNYTQPDLILLDIMMPGIDGFET 92 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K ++IPVI +TA D+ + K G Y++KP+ + ++ Sbjct: 93 CRRLKAQESTRDIPVIFLTARTDTLDKVKGFKLGAVDYLTKPVQQEEVRARVNTHL 148 >gi|262164517|ref|ZP_06032255.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus VM223] gi|262026897|gb|EEY45564.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus VM223] Length = 376 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+DN N L L++ Y L +G +AL + + KPD++++DI + E+ G E Sbjct: 6 TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQKPDLVLLDIMMPEMDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D ELQ+IPVI +TA + DE+R G YI KPIS I + + ++ Sbjct: 65 VCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLR 122 >gi|224535953|ref|ZP_03676492.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM 14838] gi|224522441|gb|EEF91546.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM 14838] Length = 1403 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE ++L L+ + Y+ NG EA+++ Q + D+I+ D+ + E+ G+E Sbjct: 1144 LIVEDNEELLQLMTKLL-GADYMVYTANNGKEAIDVVEQEEIDLIVSDVMMPEMDGIEFC 1202 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + IK E IPV+ +TA + D + G + +ISKP +LS+ I + Sbjct: 1203 QYIKNKFETSHIPVVLLTAKNKEEDRVEAYESGADGFISKPFNLSVLHARISNLLR 1258 >gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 277 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D ++ ++ +GY + +G EALEL + PD++++D+ L ++ G Sbjct: 32 ATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDGF 91 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 92 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 148 >gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 233 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + ++L + + GY NG +AL+ PD+II+DI L + G E Sbjct: 5 HILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++E + + IP+I ++A + D+ + G Y++KP S +K Sbjct: 65 VCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRR 123 >gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 252 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 57/115 (49%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED+ ++ ++ SG+ +G+EA+ +A + PD++++D L + GLE+ ++ Sbjct: 2 VEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLEVCRR 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ +PV+ +TA D G + Y++KP S + ++ + Sbjct: 62 IRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 116 >gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] Length = 229 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED +L RD +E S + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|224536005|ref|ZP_03676544.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM 14838] gi|224522372|gb|EEF91477.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM 14838] Length = 1219 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + ++ Y + NG E LE A + PD+II DI + + G+E+ Sbjct: 1072 ILVVEDNDDIREYIASSFSSN-YRIITAINGKEGLEQALKQIPDIIISDIMMPIMDGIEL 1130 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 KQ+KED IPVI +TA D+E + G ++Y++KP S + + + Sbjct: 1131 CKQVKEDIRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLL 1186 >gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51] gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +DN+ + + + GY +G ALEL +Q +PD++++D+ + ++ G Sbjct: 1 MLTLLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVMMPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I++ +P+I +TA + G + YI KP S M I+ + Sbjct: 61 FEVCREIRK---TSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 545 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61 +++I EDN++N KL + ++ G+ NG EA++ ++ D+++MDIQ+ G Sbjct: 423 RILIAEDNKVNQKLIKMMLTKEGFQVDIAANGQEAVDKLQESPENFDLVLMDIQMPVKDG 482 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E TK I+E + +P+IA+TA A+KG E+ G + Y++KPI + + I++ + Sbjct: 483 FEATKAIRE-AGFHNLPIIAITAHALKGYREKCLASGMDDYVTKPIKKNEVISAIERQMT 541 Query: 122 EA 123 A Sbjct: 542 RA 543 >gi|257482695|ref|ZP_05636736.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012227|gb|EGH92283.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 782 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 717 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776 >gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51] gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 3/124 (2%) Query: 1 MLKKV-MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+KK+ +IVED + D +E GY L +G+EALEL + + D+I++DI + ++ Sbjct: 1 MMKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMPKL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + + I++ + +I +TA + + D+ + G + YI+KP SL + + I Sbjct: 61 DGLSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINAL 118 Query: 120 IGEA 123 + A Sbjct: 119 LKRA 122 >gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++++D +L R ++ G+ + +NG E L +AR KPD+I++DI + E+ Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ ++ ++ E P+I +TA D+ + G + YI+KP + M ++ + Sbjct: 61 GLDF---MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|17229772|ref|NP_486320.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131371|dbj|BAB73979.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 421 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D+ + + + ++ GY + NG++ +E A +H P +II D Q+ E+ GLE Sbjct: 37 KILVIDDDRIIQLILKQALQEQGYEVILATNGLQGIEQADKHHPALIICDWQMDEMDGLE 96 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK + L I +T+ D G + ++SKPI ++ ++ + Sbjct: 97 VCRKIKSEPTLSTTFFILLTSRRAVEDRVEGLDTGADDFLSKPIDVNELKARVRSGLR 154 >gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL S4-378] Length = 240 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 67 VTKKLRQDKVG--VPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123 >gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 236 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ ++L + GY L NG +A+++A+ PD+I++DI + ++ G+E Sbjct: 12 KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +++ ++ +TA + + E + G + YI+KPI M I Sbjct: 72 TGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRR 130 >gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 236 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D + L +++ GY ++ NG EAL + R+ D++I+D+ + +++G+ Sbjct: 5 KTILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQNIDLVILDVMMPKLNGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+E+ +E+P+I ++A + D+ G + YI+KP + + +K + Sbjct: 65 DTCLKIREE---REMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121 >gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 611 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N++L ++ GY + NG AL A+ PD++++DI + E+ G E+ Sbjct: 13 ILIVDDNPDNLRLLSKMLTKKGYHVRKALNGQMALTAAQAVVPDLVLLDIMMPEMDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-EA 123 +K D + EIPVI ++A + D+ + G Y++KP L+ + ++ + A Sbjct: 73 CTHLKADPKTAEIPVIFLSALSDAFDKVKAFAVGGADYVAKPFQLAEVLARVQNQLALRA 132 >gi|291570098|dbj|BAI92370.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 443 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN N+ L D I G NG+EA+ A +PD+I++DI + ++ G E Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K++ IPVI +TA D+ + G YI+KP + + ++ Sbjct: 68 TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHL 124 >gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603] gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603] Length = 229 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 71/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED ++ ++ +D + YI + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKRILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 227 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+ + + Y +G E + A +++ DVI++D+ L +SG E Sbjct: 13 RVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGWE 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + PV+ +TA D + G + Y++KP + + I+ I A Sbjct: 73 FLQKLR---PTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRA 129 >gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 225 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L +G+EA ++ + + ++D+ + + G Sbjct: 1 MKRILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 2478 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 1/116 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++E G + NG A+E+ QH+ D+++MD+ + E+ G Sbjct: 2358 KKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMDG 2417 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E + I++D + +P+IAVTA A+K D E+ G Y+ KP+ +E I+ Sbjct: 2418 YETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2473 Score = 98.7 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 7/120 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED+ ++ + G+ AL G L +A + +P I +DIQL + G + Sbjct: 2092 LLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMANEFQPHAITLDIQLPVVDGWSVL 2151 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKYIGE 122 ++K + + IPV ++ D+ + G Y++KP+S L + ++ Sbjct: 2152 DRLKRNPRTRHIPVHVIS----VMDKNQGNSQGAFGYLTKPVSKEGLERVFNQLASFLER 2207 Score = 81.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 17/122 (13%) Query: 3 KKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VED+++ L+ G G E L + D +++D+ L + G Sbjct: 2210 RRLLLVEDDDVQRDSLVKLLSEGGDVEVTAVATGEEVLHHLETGEFDCVVIDLMLPDTDG 2269 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA-MKGDEER--------IRKGGCEAYISKPISLSIF 112 + + +++K + +++P++ T DE R I K G +K S Sbjct: 2270 IRLVEEVKTQNRFRDLPIVIYTGKELTPKDEARLRRYTGSVILKSG-----TK--SPEQL 2322 Query: 113 ME 114 + Sbjct: 2323 LS 2324 >gi|298488052|ref|ZP_07006089.1| sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157331|gb|EFH98414.1| sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 782 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 717 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776 >gi|254883604|ref|ZP_05256314.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254836397|gb|EET16706.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1446 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1248 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1249 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307 >gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W] gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W] gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330972309|gb|EGH72375.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 794 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 671 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 730 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 731 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 788 >gi|320160069|ref|YP_004173293.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319993922|dbj|BAJ62693.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 300 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++IVED+ + + + GY G +ALE RQ+ P +I++DI L +I Sbjct: 1 MGKARLLIVEDDVDISNMLKIYFSSQGYDVETALRGSDALEKTRQNMPHLIVLDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E+ +Q++ + IPVI +T + D + + G + YI+KP + ++ Sbjct: 61 NGYEVCRQLRTTTRTSHIPVIFLTQKDERSDRLQGLELGADDYITKPFDIDELRLRVQNA 120 Query: 120 IGEA 123 I + Sbjct: 121 ISRS 124 >gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08] gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07] gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08] gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L + SGY ++ +G EAL++ ++ ++++DI + ++ Sbjct: 1 MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++E IP++ ++A + D+ + G + Y++KP + +K I Sbjct: 61 GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 228 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ I G+ + G EAL R+ PDVI++D L +SG+E+ Sbjct: 7 VLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHVSGIEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K SE ++IPVI ++A + D+ R + G + YI+KP S++ + ++ + Sbjct: 67 CRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRR 124 >gi|71737066|ref|YP_275771.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557619|gb|AAZ36830.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|330889304|gb|EGH21965.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 782 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 717 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776 >gi|330980330|gb|EGH78455.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 272 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + +G EALE Q D+++MD + + G Sbjct: 149 ARVLLVEDNPVNQLVAKGILGKLGCEVTISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 208 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 209 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 266 Score = 34.7 bits (80), Expect = 4.3, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 26/93 (27%) Query: 37 EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA--MKGDEERI 94 EA++L PD++I E I+ +P++ VTA+ M G++ Sbjct: 57 EAVDL--DGSPDLVIT-------DCPECLFAIR---PTTPVPILLVTAYGNFMPGEQVAA 104 Query: 95 R-----KGGCEAYISKPISLSIFMETIKKYIGE 122 + +P++ + T+++ +G+ Sbjct: 105 LAPLQQQA-------RPLARNALYHTLRRILGQ 130 >gi|294054856|ref|YP_003548514.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614189|gb|ADE54344.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 371 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +N+KL + +E G L NG E L++ + KPD+I++D+ + E+ G+E Sbjct: 8 RILVVDDQPINIKLLQRKLERQGLEVLVAYNGRECLKVVEESKPDLILLDVMMPEMDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +K + E + IP++ +TA A K + G YI+KPI L + ++ + Sbjct: 68 TCQHLKANPETETIPIMFITAKASKEGKLEGLDAGAVDYITKPIDLDETLARVRTQLR 125 >gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 225 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ L + + G++ +G L R PD++I+D+ L + Sbjct: 1 MSPRILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++ +PV+ +TA ++ R + G + Y++KP S + ++ + Sbjct: 61 GLEVLSRLRRVD--ANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] Length = 226 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 71/121 (58%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL RD + GY L+ +GMEA+E+ + K ++I+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I++ S+ PVI +TA + + DE + + G + YISKP S I + ++ + Sbjct: 65 QVCREIRQSSQT---PVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|87118375|ref|ZP_01074274.1| serine/threonine kinase with two-component sensor domain [Marinomonas sp. MED121] gi|86166009|gb|EAQ67275.1| serine/threonine kinase with two-component sensor domain [Marinomonas sp. MED121] Length = 2128 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 71/119 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN LN ++ + L++ S NG+EA+E ++ D++ MDIQ+ + G Sbjct: 1772 KILLVEDNPLNRQVAQGLLKESLLDIDLATNGLEAIEKLSNNEYDLVFMDIQMPILDGFS 1831 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK+I+E E + +P+IA+TA A D ++ + G YISKPI + + + K+I E Sbjct: 1832 ATKRIREKPEWKSLPIIAMTAHATDSDRDKCLQVGMNDYISKPIDPNKLTKMLAKWIKE 1890 >gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1023 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 71/118 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDNE+N ++ L++ +G NG EALE + D+++MD+Q+ + GL Sbjct: 669 ARILVAEDNEINQEVILQLLQATGARVTLAENGREALEQVCANAYDLVLMDVQMPVMDGL 728 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+ +E +E+P++A+TA A + D + + G +++KPI ET+ +++ Sbjct: 729 EATRAIRARAEYRELPILAMTANAFESDRRQCIEAGMNDHLAKPIEPERLTETLARWL 786 Score = 84.4 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 53/126 (42%), Gaps = 11/126 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 ++ ++++D+ + L+E+ G A G+E + + +I +D ++ Sbjct: 521 RRALVIDDHPEARAILIHLLESLGLRAEAVAGGLEGVSAVIEADRRGDPYHLITIDWKMP 580 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAM---KGDEERIRKGGCEAYISKPISLSIFME 114 ++ GLE ++++ ++ VTA+ E G ++KP++ S + Sbjct: 581 DMDGLETVRRLQALPVRYHPELLMVTAYGDQLPDSCRE---DMGAIQVLAKPVTPSGLHD 637 Query: 115 TIKKYI 120 + + Sbjct: 638 ALAAAL 643 >gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 237 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++IV+D + L ++ GY ++ NG EAL + + D+II+DI + ++ Sbjct: 1 MSKERILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G+E +I+E+ +E+P+I ++A + D+ G + Y++KP + + ++ Sbjct: 61 NGIEACLKIREE---REMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 236 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 68/124 (54%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +M+V+D+ ++ ++ G+ + ++G++A+E+ + PD++I+DI + E Sbjct: 1 MAKAPTIMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMFAEATPDLVILDILMPE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E+ K+I+ S ++P+I +++ + D + G + Y++KP S + +K Sbjct: 61 MDGTEVCKKIRAHS---DVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKA 117 Query: 119 YIGE 122 + Sbjct: 118 RLRR 121 >gi|119483258|ref|ZP_01618672.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC 8106] gi|119458025|gb|EAW39147.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC 8106] Length = 753 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D LN+K + + Y L + G ALE+A +P++I++DI++ E+ G E+ Sbjct: 11 VLVVDDYPLNLKFLCASLSRAKYEVLVAQTGESALEIAVSQQPELIVLDIRMPEMDGYEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K ++IPVI +TA + ++ + K G YI+KPI + I+ ++ Sbjct: 71 CRQLKASPVTRDIPVIFMTALSETDNKVKGLKLGAADYITKPIHPEEALSRIQTHL 126 >gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] Length = 240 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 67 VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123 >gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 235 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D++ L R +E GY L +G +A+ + PD++++DI L G + Sbjct: 8 KVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIMLPGKDGWQ 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + +P+I +TA D+ + G + YI KP + I Sbjct: 68 VCREIRK---ISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRR 123 >gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + GY +G+ AL + PD++++++ L + GL Sbjct: 6 RILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLPGLDGLA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +P++ VT GD G + Y+ KP + + ++ + Sbjct: 66 VARRLRASGRT--VPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRR 122 >gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 239 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59 + V++V+D L SG+ +G A E +Q K D++++D+ L + Sbjct: 1 MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++++++ +IP+I +TA + D + G + Y++KP S + + Sbjct: 61 DGLEVCRRLRQEGV--KIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAV 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 227 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G AL + D++++D+ L E+SG Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLMLPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +P+I VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRQRS---YVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|150002960|ref|YP_001297704.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931384|gb|ABR38082.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1440 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1242 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1243 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301 >gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 275 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L ++ G+ A +G E + + D++++D+ L GL Sbjct: 6 HILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ SEL PVI +TA D + G + Y++KP + + I+ + A Sbjct: 66 LCRKLRARSEL---PVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRA 122 >gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] Length = 229 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++VED+ +L GY T +G EAL +A + PD++I+D ++ Sbjct: 1 MPKAKLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGT 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ + E +P+I +TA + D R G + Y+ KP S + + Sbjct: 61 SGIEVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAV 120 Query: 120 IGE 122 + Sbjct: 121 MRR 123 >gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB] gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB] Length = 1560 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ EDN +N ++ DL+ +G ++G EAL LAR+ D+I+MD+Q+ + GL Sbjct: 1233 AHILLAEDNAINAEVASDLLRGAGLKVDLAKDGAEALSLARRQHYDLILMDMQMPVMDGL 1292 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI+ +IP++A+TA A D++ G +++KP++ + + +++ Sbjct: 1293 EATRQIRTLPGWGKIPILAMTANAFDEDKDTCLAAGMNDHVAKPVAPDVLFAALARWL 1350 >gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 273 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ NG++A+ AR +PD +I+DI L +I GLE Sbjct: 42 RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ D+ ++PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 102 VLRRLRADAT--DVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRS 159 >gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L +D +E SG+ +G L A ++II+D+ L + G Sbjct: 1 MNKILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++++++ + P+I ++A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICRRVRDE---KNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED + + + + T+GY ++ +G EA+++ + D++I+DI L + G Sbjct: 1 MKKILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I ++IKE +PVI +TA + DE + G + YI+KP S +F+ +K + Sbjct: 61 WSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVL 116 >gi|320105191|ref|YP_004180782.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] gi|319752473|gb|ADV64233.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] Length = 145 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED+ +++ +E G+ L +G AL+L ++ KPD+I++DI L +I+ Sbjct: 1 MSATILIVEDSPTVLRMASAALEDGGFRVLTATDGEAALQLVKREKPDLIVLDIILPKIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + +K D + I ++ +++ + + D + G + Y++KP + T+ + + Sbjct: 61 GFQVCRHLKNDPASRHIKILLLSSKSGESDRYWGLRQGADDYLTKPFEPEGLVSTVTRLL 120 Query: 121 GE 122 Sbjct: 121 NR 122 >gi|261868867|gb|ACY02044.1| two-component system sensor histidine kinase/response regulator [Flammeovirga yaeyamensis] Length = 1385 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 73/125 (58%), Gaps = 6/125 (4%) Query: 1 ML-----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55 M+ K+++++DN ++ +DL++ + Y NG L+LA++ P++II DI Sbjct: 1121 MMETSTKAKILVIDDNFSIREMMKDLLKDT-YDVYLADNGKNGLDLAKKIMPNLIISDIM 1179 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + E+ G E+T++I+ED+ + +P+I +TA + + + + G +AY++KP + + + Sbjct: 1180 MPEMDGYELTQRIREDNHICHLPIILLTAKKSEESKLKGYEYGVDAYVTKPFNSEVLLAR 1239 Query: 116 IKKYI 120 I I Sbjct: 1240 ILTLI 1244 >gi|209527246|ref|ZP_03275757.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209492313|gb|EDZ92657.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 443 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN N+ L D I G NG+EA+ A +PD+I++DI + ++ G E Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCKIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K++ IPVI +TA D+ + G YI+KP + + ++ Sbjct: 68 TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHL 124 >gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 227 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G AL + D++++D+ L E+SG Sbjct: 1 MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +P+I VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 SEVCRQLRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601] Length = 233 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 3/115 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 V+D ++ + GY + +G EALE R+ PD++++D+ + ++ G + ++ Sbjct: 2 VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYGVCQE 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++S ++P+I +TA D + G + Y+ KP S I+ + Sbjct: 62 LRKES---DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113 >gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 253 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D ++ + GY + +G++A+E+ + PD++++D+ + ++G Sbjct: 15 KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGYG 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E + +IP+I +TA D + G + Y++KP S I + Sbjct: 75 VCQKIRE---ISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130 >gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] Length = 229 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++++D+ +L + +G +G L D +++D+ + + Sbjct: 1 MPTRVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+I+ ++ +P++ +TA + D + G + Y++KP S + ++ + Sbjct: 61 GLEVCKRIRAKTQ---VPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|153871894|ref|ZP_02000947.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152071639|gb|EDN69052.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 407 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I+EDN N+ + D +E +G + RNG L+ A+ +PD+I++D+ + I G E Sbjct: 19 TILIIEDNPNNLGVIVDYLEEAGLKVVVARNGEMGLKRAQFAQPDIILLDVMMPGIDGFE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122 +++K D++ QEIPVI +TA D+ + G YI+KPI + + ++ Sbjct: 79 TCRRLKADAKTQEIPVIFMTALDDPEDKLKGFGVGGVDYITKPIQHEEVLARVTTHLRIR 138 Query: 123 A 123 A Sbjct: 139 A 139 >gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 262 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ L +E SG+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L IK + + Sbjct: 65 CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123 >gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA [Mycobacterium intracellulare ATCC 13950] Length = 228 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ + R + +GY +G+EALEL +PD +++D+ + + GLE Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 62 VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] Length = 229 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED +L RD +E S + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 225 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + Sbjct: 1 MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 230 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++V+D + L ++ Y + +G EAL+ +++ D+ I+D+ + ++ Sbjct: 1 MVYNILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVMMPDLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+ED PVI +TA D+ G + Y++KP + +K + Sbjct: 61 GFSLLKKIREDYFF---PVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|119899448|ref|YP_934661.1| two-component system regulatory protein [Azoarcus sp. BH72] gi|119671861|emb|CAL95775.1| two-component system regulatory protein [Azoarcus sp. BH72] Length = 227 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVEDN + D + GY ++G+ L LA H D+I++D+ L + Sbjct: 1 MNTRLLIVEDNRDILANLADYLTLKGYEVDCAQDGLTGLHLAATHHFDLIVLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E E + P+I +TA D G + Y++KP +LS + I+ + Sbjct: 61 GFTLCKRLRE-GERSDTPIIMLTARDALDDRLIGFSAGADDYLTKPFALSELVARIEAVL 119 >gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630] gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196] gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291] gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196] gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291] Length = 230 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++V+D + L + SGY ++ +G EAL++ ++ ++I+DI + ++ Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++E IP++ ++A + D+ + G + Y++KP + +K I Sbjct: 61 GIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|73539168|ref|YP_299535.1| PAS [Ralstonia eutropha JMP134] gi|72122505|gb|AAZ64691.1| PAS [Ralstonia eutropha JMP134] Length = 1060 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 71/119 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VEDN +N ++ + L+ +G Q NG AL L Q + D+++MD+Q+ + GL Sbjct: 788 RTVLLVEDNPINQEVAQALLTQAGMQVTQANNGQHALGLLAQGRFDLVLMDVQMPMLDGL 847 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T++I+ D +PV+A+TA A++ D +R G + Y+SKPI + + + +G Sbjct: 848 ETTQRIRRDPRHASMPVVALTASALEDDRQRCLAAGMDDYVSKPIEPRKLYQVMARLVG 906 >gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 229 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + Y + + EA PD+I++D L S Sbjct: 1 MQKQILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++ + ++ +E+P+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVM 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D E L +E GY ++ +G EA+ + D++++DI + ++ G E+ Sbjct: 6 ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKMDGYEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+E +P+I ++A D+ + G + Y++KP + + + + Sbjct: 66 TRRIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRR 120 >gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 231 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEI 59 M ++++V+D++ + SGY +G+EAL + PD ++MD+ + + Sbjct: 1 MAMQILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE TK ++ + ++P++ +TA GD G + Y+ KP SL + ++ Sbjct: 61 DGLETTKMLRANGN--DVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRAL 118 Query: 120 IGEA 123 + Sbjct: 119 TRRS 122 >gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 229 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + + + + + A PD+I++D L S Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAAQTAIADRVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++ +++ +EIP+I +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 236 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+++++ ++P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQNKV--DVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL F2-208] gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A] Length = 246 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E Sbjct: 13 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 73 VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 129 >gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 232 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++++ED+ L ++ G+ +G L LAR+ KPD I++D+ L I Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + IK+D + PV+ VTA + D + G + YI KP + +K + Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1044 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 77/118 (65%), Gaps = 3/118 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++ ED+E+N+ R+L+ +G+ + NG E LE + D+++MDIQ+ E+ G+ Sbjct: 921 RKILVAEDDEVNLFAVRNLLTKNGHEVVTAHNGHEVLERIMEQDFDLVLMDIQMPEMDGI 980 Query: 63 EITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E T++I+ + + + +P+IA+TA+AM GD E++ G + Y+SKP S+ ME IK Sbjct: 981 EATRRIRVTEQATGKKPVPIIAMTAYAMNGDREKLLDKGVDGYVSKPFSIKTLMEVIK 1038 >gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 226 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 + K+++V+D+ +L + +E +G ++ +G+EAL + Q D+++MDI + + Sbjct: 1 MAKILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVMEQVSVDLVVMDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ ++ IPV+ +TA + + G + Y+ KP + + +K + Sbjct: 61 GWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] Length = 228 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K ++++V+D +++ + GY NG EA++ A++H P +IIMD+ + Sbjct: 1 MKKKEIRILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHNPHLIIMDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I++ EL + + +TA + G + YI+KPI + + +K Sbjct: 61 EMDGMEACEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|148728193|gb|ABL96292.2| histidine kinase [Pseudomonas fluorescens] Length = 778 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + ++ G + +G EAL+ + D+++MD + + G E Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGAEALDQLEHDEFDLVLMDCNMPVMDGYE 715 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++QI++ +P++A+TA AM + ER R G Y++KP + ++I Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREELATLLDQWI 772 >gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob [Stigmatella aurantiaca DW4/3-1] gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IV+D +L ++ +G+ G AL A +H P ++++D+ L +ISG Sbjct: 1 MSHVLIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLMLPDISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ ++ +++ V+ +TA + D R + G + Y++KP S+ + IK + Sbjct: 61 TEVCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAILR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|37676245|ref|NP_936641.1| response regulator [Vibrio vulnificus YJ016] gi|37200786|dbj|BAC96611.1| response regulator [Vibrio vulnificus YJ016] Length = 378 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN N L L+ ++ Y L NGM+A+ + H PD++++DI + E+ G E Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q+K D IP+I +TA + DE++ G YI KPIS I M ++ ++ Sbjct: 66 VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHL 122 >gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY + +G EAL + + PD+I+ DI + ++ Sbjct: 19 MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEAYHPDLIVTDIVMPRMN 78 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ + +PVI +TA + + GC+ Y+ KP L I+ + Sbjct: 79 GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 138 Query: 121 GEA 123 + Sbjct: 139 ERS 141 >gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 226 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ + ++ L+E +GY + + L+L QH PD+I++D+ + +I G E+ Sbjct: 3 ILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHNPDLILLDVMMPKIDGFEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ +S +IP+I ++A D + G + Y+ KP S + ++ + Sbjct: 63 CRQIRRNS---DIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRR 117 >gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 581 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +N ++ G+ +G EAL + + D+++MDIQ+ ++GLE Sbjct: 460 RILLAEDEPVNRIFTVRALQKLGHAVDAAADGREALAMLERGAYDLVLMDIQMPRLNGLE 519 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + +PV+A+TA+AM+GD ++ + G + Y++KP + +++ + Sbjct: 520 ATRRIRSGQVEGVPPTMPVVALTAYAMEGDRQKGLEAGMDEYVTKPFEPAELTAAMERAL 579 Query: 121 GE 122 + Sbjct: 580 AK 581 >gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB] gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB] Length = 1439 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 73/121 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDNE+N +L +++ G + NG +A++ RQ+ D+++MD + + G Sbjct: 1105 RHILLVEDNEVNRELAEEMLGNIGLLVDTAENGQQAIDRIRQNAYDLVLMDCHMPVMDGY 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I+ + +L ++P+IA+TA A+ D E G + +I KPI +++ T+ +++ + Sbjct: 1165 TATEYIRHELKLPQLPIIAMTANALHSDREHCLAVGMDDHIPKPIDVAVLHATLLRWLSQ 1224 Query: 123 A 123 A Sbjct: 1225 A 1225 Score = 55.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 18/131 (13%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 + +IV+D+ ++F ++ G R+ AL ++I+D ++ + Sbjct: 959 RALIVDDSHGACEVFLHMLTVFGIDCHAVRSAPAALLELAAAAETGQAYGLLIIDWKMPD 1018 Query: 59 ISGLEITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKG------GCEAYISKPISLSI 111 + G+E+ ++I + + + ++ TA+ D E + G +SKP + S Sbjct: 1019 MDGVELVEKISQSNGPERTAAIVMATAY----DHEELLAALGKHPVGA--ILSKPATPSS 1072 Query: 112 FMETIKKYIGE 122 ++I + Sbjct: 1073 LFDSIMVALHR 1083 >gi|300864661|ref|ZP_07109518.1| response regulator receiver protein [Oscillatoria sp. PCC 6506] gi|300337322|emb|CBN54666.1| response regulator receiver protein [Oscillatoria sp. PCC 6506] Length = 121 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + VM+V+D+ ++ DL++ G +G+EALE + + PD++++DI + ++G Sbjct: 1 MSTVMVVDDSVTLREMIADLLKGRGLNVTVASDGVEALEQIKANCPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q +PV+ ++ + + D K G +AYI+KP + TIK+ + Sbjct: 61 YEVCRRLKSDPKTQNLPVVMCSSKSEEFDRYWGMKQGADAYIAKPFHPQELVGTIKQLLR 120 >gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 234 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED ++L + +G+ G EA+ A++ +PD+I++D+ L ++ G Sbjct: 8 ARLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++++ + PV+ +TA D+ R G + Y++KP SL + I+ + Sbjct: 68 EIVRRLR--GCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRR 125 >gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 229 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D Y L+ R+G EAL L + + ++I+DI L E+ Sbjct: 1 MTKTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ ++P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium zucineum HLK1] gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium zucineum HLK1] Length = 454 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y L +G AL +A +PD++++D+ + + Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVLTASDGPTALAMAAAERPDIVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++K+D E + +PV+ VTA + D + G + +++KPI + + ++ Sbjct: 61 GFSVCRRLKDDPETRHVPVVLVTALDGRADRVAGLEAGADDFLTKPIDDVMLLARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I++DN + + + + + +AL L+ + D+ I++ + GL Sbjct: 155 RILIIDDNVRQAQRVCTELAIE-HRPVIETDYDKAL-LSARGPVDLAIVNAGAKAFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ D + +P++AV F + + + G +++PI K I Sbjct: 213 FCAQLRSDEATRGLPILAVVDFDERQRVVKALEIGVNDILARPIDPGELAARAKTQIRR 271 >gi|328543460|ref|YP_004303569.1| chemotaxis protein CheY [polymorphum gilvum SL003B-26A1] gi|326413204|gb|ADZ70267.1| CheY-like receiver [Polymorphum gilvum SL003B-26A1] Length = 123 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 90/122 (73%), Positives = 106/122 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY LQTR G+EALELAR H+PD+I+MDIQL E+S Sbjct: 1 MAKTVLIVEDNELNMKLFHDLLEAHGYNTLQTRTGIEALELARAHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED +L IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ET++ Y+ Sbjct: 61 GLEVTKWIKEDDDLCTIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVAKFLETVRSYL 120 Query: 121 GE 122 GE Sbjct: 121 GE 122 >gi|320158374|ref|YP_004190752.1| response regulator [Vibrio vulnificus MO6-24/O] gi|319933686|gb|ADV88549.1| response regulator [Vibrio vulnificus MO6-24/O] Length = 378 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN N L L+ ++ Y L NGM+A+ + H PD++++DI + E+ G E Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q+K D IP+I +TA + DE++ G YI KPIS I M ++ ++ Sbjct: 66 VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHL 122 >gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 227 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 268 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 VM+V+D ++ ++ +GY + +G EAL L + +PD++++D+ L ++ G Sbjct: 23 ATVMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLPKLDGF 82 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 83 AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 139 >gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1431 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDN +N + ++E G NG A+E A + D+I+MD Q+ E+ G Sbjct: 1158 ARILLAEDNPVNQDVASSMLEMLGCRITIAPNGRAAVEAATTGRFDLILMDCQMPEMDGF 1217 Query: 63 EITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T I+ + +P+IA+TA AM+GD R G + Y++KP +++ + + Sbjct: 1218 TATAAIRRQEATATDRRHVPIIALTANAMEGDRARCLAAGMDDYLTKPFTVAQLYAFLTQ 1277 Query: 119 YI 120 ++ Sbjct: 1278 WL 1279 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 65/127 (51%), Gaps = 11/127 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57 ++++IV+D N+++ +++ G + +AL +Q + D+ I+D+++ Sbjct: 1013 RQILIVDDMRTNLEILATHLQSWGATVFTAESADDALLQLEHFRHKQQQIDMAILDLRMP 1072 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISLSIFME 114 G+++ + IKE + Q +P+IA+++ + + D +++ KP+ S+ + Sbjct: 1073 GRDGVDLARSIKEQAAYQNLPLIALSSVERLSDESDVTHRL---FHSFLRKPVRQSLLRD 1129 Query: 115 TIKKYIG 121 + + +G Sbjct: 1130 CLTRALG 1136 >gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase [Brevundimonas subvibrioides ATCC 15264] Length = 454 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y L +G A+ LA KPD+I++D+ + + Sbjct: 1 MTARILVVDDVEANVRLLEAKLTLEYYDVLTCSDGATAVRLAASEKPDIILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++IK D IP++ VTA + D + + G + +++KP+ + ++ Sbjct: 61 GFETCRRIKADPATNHIPIVLVTALDGREDRIKGLEAGADDFVTKPLDDVVLFARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 78.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+DN + + + + + L ++ + D++I+++ GL Sbjct: 155 RVLIVDDNARQAAGIAEELTRE-HRPVIETDAAAGL-ISSKTPVDLMIVNVTAASFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q++ + +P++AV D + + G + +P+ + + Sbjct: 213 LIAQVRSADPTRHLPILAV---VDPADRPRLVKALELGVNDILMRPVDPEELAARARTQV 269 Query: 121 GE 122 Sbjct: 270 RR 271 >gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 225 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] Length = 229 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|309791481|ref|ZP_07685985.1| signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226478|gb|EFO80202.1| signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 495 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 58/117 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L+E GY +G EAL R PD+I++D+ + ++ G E+ Sbjct: 7 ILVVDDQPRSQMALSSLLEPEGYRLAFASSGPEALAQMRLIAPDLILLDVMMPDMDGFEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I+ D IPV+ VTA + R + G + +++KP + + I+ Sbjct: 67 CERIRADPAFATIPVVMVTALDDQESLLRGIRSGADDFVTKPFNRTELRARIRTITR 123 >gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 225 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D + + +D ++ GY + G EAL + + PD+I++D+ + + Sbjct: 1 MNQTILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN-PDLIVLDVMMPGMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I++ P+I ++A + D + G + Y+ KP S+ I ++ Sbjct: 60 GFALCELIRKSI---SCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 225 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 250 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQL 56 ++++VED EL ++ +E GY + +G A+E + +P D++I+D+ L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ +P++ ++A + D + G + Y++KP S+ + Sbjct: 80 PQINGLDICRLLRHQGN--PVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241] gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W] gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293] gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241] gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W] gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293] gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676] gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185] gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550] gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W] gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W] gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550] gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185] gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676] gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5] Length = 233 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + NG +AL + P +I++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S P+I ++A D+ + G + YI KP + ++ + Sbjct: 65 QVCREIRAKS---STPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRR 121 >gi|107102374|ref|ZP_01366292.1| hypothetical protein PaerPA_01003436 [Pseudomonas aeruginosa PACS2] Length = 772 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ +H D+++MD + + G E Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 709 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 710 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 765 >gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 225 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ +++ G+ +G +AL R+ +PD++++D+ L ++ Sbjct: 1 MKPRILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + ++ DS +P++ +TA + D + G + Y+ KP + I+ + Sbjct: 61 GIDVCRVLRSDSG---VPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1767 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 77/119 (64%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+ I++ EL E+PVIA+TA AM GD+E K G +I+KPI +++ +T+ KY+G Sbjct: 1484 QATQAIRKRPELAELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYLG 1542 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +DN + R +E+ G+ R+G EA+ Q + V ++D ++ + G+E Sbjct: 1284 ILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVALIDWKMPNLDGIET 1343 Query: 65 TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 KQIK+ + + P ++ V+A A + +I G YISKPIS S ++ I +G A Sbjct: 1344 AKQIKQLA--KNAPRILMVSAHATQEFLSQIEALGLAGYISKPISASRLLDGIMNSLGRA 1401 >gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] Length = 234 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++VED+ L + + GY +G E E+A + D+II+DI L E+ G Sbjct: 3 MKKVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPEMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I ++++ P++ +TA + + D+ + G + YI+KP + F+ +K + Sbjct: 63 IAICQKLRALDNF--TPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 235 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +V++V+D + R + G + NG EAL+L + ++ +I+MD+ + ++ Sbjct: 1 MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ T I+E +P+I +TA + D+ G + YI+KP + + +K Sbjct: 61 DGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ A +G +ALE ++ D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++++ S +PVI VTA + D+ + G + Y++KP S + ++ + Sbjct: 61 TDVCRELRQRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220906498|ref|YP_002481809.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219863109|gb|ACL43448.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 120 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED ++L + SGY L NG EAL+ A +H PDV++ D+ + E+SG Sbjct: 1 MSTVLVVEDTPSELELISSYLRDSGYRVLSAANGKEALDQAMKHHPDVVVTDVVMPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + +K++ Q +P++ ++ + D K G + YI+KP + + ++ + Sbjct: 61 FELCRNLKKNPATQNVPIVICSSKNQELDRLWALKQGADGYITKPFNREDLVRAVRSLL 119 >gi|27366537|ref|NP_762064.1| response regulator [Vibrio vulnificus CMCP6] gi|27358103|gb|AAO07054.1|AE016808_74 Response regulator [Vibrio vulnificus CMCP6] Length = 378 Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN N L L+ ++ Y L NGM+A+ + H PD++++DI + E+ G E Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q+K D IP+I +TA + DE++ G YI KPIS I M ++ ++ Sbjct: 66 VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHL 122 >gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 64/118 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I ED + L +E GY +G EAL + ++ +PD+++ D + ++SG+E+ Sbjct: 5 IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWMMPKVSGIEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ S + +P++ +TA + + D R G + Y+ KP S+ F+ I+ + Sbjct: 65 CRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRR 122 >gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] Length = 232 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I +DN K+ GY + +G EAL+L + P +++D+ + ++ G Sbjct: 1 MQNILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ S +P+I VTA ++ G + YI KP S S M ++ + Sbjct: 61 YEVCRKIRAKS---NVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] Length = 230 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59 M KV+I+ED ++ ++ +GY Q L ++ PD++++D L Sbjct: 1 MNAKVLILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGA 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+TK++K+D + Q++PVI +TA + D + + G + Y+ KP S + ++ Sbjct: 61 SGVELTKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAV 120 Query: 120 IGEA 123 + + Sbjct: 121 LRRS 124 >gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 239 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK + IVED + +L R +E +GY +G E+ + KPD+ ++DI L + Sbjct: 4 MAKKLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGV 63 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI K+IKE+ +L++IP+I +TA + D + G + YISKP S+ F+ +K Sbjct: 64 DGFEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVA 123 Query: 120 IGE 122 Sbjct: 124 FRR 126 >gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] Length = 255 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D + ++ ++ E G+ + +GM+A+++A++ D+IIMD+ + + G Sbjct: 33 MYKILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDG 92 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I++ + P++ ++A + D+ + G + Y+ KP S + I I Sbjct: 93 FSACKEIRK---FKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIK 149 Query: 122 E 122 Sbjct: 150 R 150 >gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 233 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED +L ++ +G+ ++ N +A L PD++++D L S Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLISDVLPDLVLLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ + + IP+I +TA + D+ + G + Y++KP S M IK + Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 233 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ ++L + +G+ +G AL A+ H+PD++++D+ L ++ G Sbjct: 8 ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPDLDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++E PV+ +TA D+ R G + Y++KP SL I+ + Sbjct: 68 EVIRMMRE--GGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125 Query: 123 A 123 + Sbjct: 126 S 126 >gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 224 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E G+ A+ +G A+ R PD++++D+ L +S Sbjct: 1 MPPKILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+I+++S +P++ +TA D + G + YI+KP + I+ + Sbjct: 61 GVDICKEIRKES---NVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARL 117 Query: 121 GE 122 + Sbjct: 118 RQ 119 >gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 962 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 73/119 (61%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K +++V+D+ N+ ++E G + NG EALEL + + D+++MDI + E+ G Sbjct: 843 KTILMVDDDIRNVFALSSVLEEKGMTIVIGENGKEALELLKNNPGIDLVLMDIMMPEMDG 902 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI++ ++ ++P+IA+TA AMKGD ++ G Y+SKPI + + ++ ++ Sbjct: 903 YEATRQIRKQTQFSKLPIIALTAKAMKGDRQKCIDAGANDYLSKPIDIDKLLSLLRVWL 961 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 14/126 (11%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ K+ DL G+ L +G L+LA Q+ P II+DI L + G + Sbjct: 578 LIIEDDPKFAKILFDLAREKGFKGLIAGDGAAGLQLADQYSPVAIILDIGLPGMDGWAVM 637 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF-----------ME 114 +++K++ + + IPV ++A K G Y++KP++L I + Sbjct: 638 EKLKKNPDTRHIPVHFMSAQDTP---LEAMKMGAIGYLTKPVTLDILNDAFNTIEETISQ 694 Query: 115 TIKKYI 120 TIKK + Sbjct: 695 TIKKLL 700 Score = 90.6 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED++ +L+ G +A L + + D +++D+ L +ISG Sbjct: 697 KKLLVVEDDDTMRASMLELLNGEDVDITPAATGEKAYHLLQSERFDCMVLDLGLTDISGF 756 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI 116 + ++IK D+ + IP+I T + +EE K E+ I K + S ++ + Sbjct: 757 GLLEKIKADATMSHIPIIVYTGKDLTKEEETKLKQHAESIIIKGVKSPERLLDEV 811 >gi|15598020|ref|NP_251514.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9948909|gb|AAG06212.1|AE004709_5 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 786 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ +H D+++MD + + G E Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779 >gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans TK24] gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+I+ED+ R + G+ G + LE R +PD +++D+ L +SG Sbjct: 1 MPRVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ + +P+I TA D + G + Y+ KP+ I I+ + Sbjct: 61 LEVCRRIRAHDQ---VPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|152974374|ref|YP_001373891.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023126|gb|ABS20896.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 224 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ + +++DI + + G E Sbjct: 4 ILLVDDEPKMLELLTLYLTPKGYNCVCATSGQEAISYIEKQNFKFVLLDIMMPNMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I+ IP++ VTA K D K G + YI+KP + I+ + Sbjct: 64 CKNIRS---FSRIPILMVTARDQKIDVVHGLKIGADDYITKPFHEEELLARIEAVLRR 118 >gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1427 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN L+ S Y +G+ ALE A + +PD++I DI + + GL Sbjct: 650 RVLLADDNPDMRDYVARLLGES-YEVDAVGDGVAALEAAWKQRPDLVISDIMMPRLDGLS 708 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K ++ DS L ++PVI ++A A + + G + Y+SKP S + ++ + Sbjct: 709 LLKALRNDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNL 765 Score = 91.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 58/126 (46%), Gaps = 14/126 (11%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGL 62 V++VEDN + L+ GY + + +AL+L Q + ++++ D+ + + G+ Sbjct: 1307 VLVVEDNSEVGEFSTQLLHDLGYETVLASSAEQALKLLDQDADRFNIVLSDVVMPGMDGV 1366 Query: 63 EITKQIKEDSELQEIPVIAVT--AFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I++ L +PV+ + A + D + + KP S+ + +++ + Sbjct: 1367 ALGREIRK--RLPNLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRAM 1419 Query: 121 ---GEA 123 A Sbjct: 1420 TESRRA 1425 >gi|330953570|gb|EGH53830.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 783 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 777 Score = 34.3 bits (79), Expect = 5.8, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 26/93 (27%) Query: 37 EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA--MKGDEERI 94 EA++L PD++I E I+ +P++ VTA+ M G++ Sbjct: 568 EAVDL--DSSPDLVIT-------DCPECLFAIR---PTTPVPILLVTAYGNFMPGEQVAA 615 Query: 95 R-----KGGCEAYISKPISLSIFMETIKKYIGE 122 + +P++ + T+++ +G+ Sbjct: 616 LAPLQQQA-------RPLARNALYHTLRRILGQ 641 >gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + L +D +E G L NG E +E A++ PD+I++DI + +I G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ + P++ ++A + D + G + Y+ KP SL + I ++ Sbjct: 60 YEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|256376590|ref|YP_003100250.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920893|gb|ACU36404.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED R +E +G+ +G + L + +P ++++DI L + G Sbjct: 1 MSTVLVVEDEPDIALALRLNLERAGHEVRVASDGKQGLRELHESQPSLVLLDIGLPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ ++ ++PV+ +TA M+ D+ R +GG + Y++KP S + I+ + Sbjct: 61 WMVLERIR---DVSDVPVLLLTAHGMEADKVRGLRGGADDYLTKPFSAKELLARIEAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 269 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D +K+ +E +GY + +G EAL++ + PD++++D+ L ++ G Sbjct: 25 SATILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVMLPKLDG 84 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ +S +P+I ++A + G + Y+SKP S I + Sbjct: 85 FAVCRRLRAESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 141 Query: 122 E 122 Sbjct: 142 R 142 >gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 234 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 V+D ++ + GY + +G EA+ + PD++++D+ + ++ G + ++ Sbjct: 2 VDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQE 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 62 LRKES---DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113 >gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 250 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 ++++VED EL ++ +E GY + +G A+E + + D+II+D+ L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ +P++ ++A + D + G + Y++KP S+ + Sbjct: 80 PQINGLDICRLLRHQGN--PVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + ++ + +GY L+ G +AL++ R+ D+II+D+ L ++SG Sbjct: 1 MKNILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLMLPDLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ S +P++ +TA + G + Y+ KP S + ++ + Sbjct: 61 EEVCREIRRQSA---VPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.] Length = 234 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D +K + + E Y +G EA + + D+II+DI + +I GL Sbjct: 11 KILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGLA 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ + PV+ +TA D+ + G + Y+ KP S M ++ + Sbjct: 71 VLQEIRKSGI--KTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRS 128 >gi|296388689|ref|ZP_06878164.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 772 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ +H D+++MD + + G E Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 709 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 710 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 765 >gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ + R + +GY +G+EALE+ +PD +++D+ + + GLE Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 62 VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 228 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWTVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117 >gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++V+D +L +K R +E +G EALE+ ++ + D+I++D+ L + Sbjct: 1 MGRKVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+ + ++PVI +TA D+ + G + YI+KP ++ +K + Sbjct: 61 GFEVCRQIR---DFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIM 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K+ +++V+D + + +E + N +A + +++ PD++I DI + Sbjct: 1 MSKQASILLVDDEPGIRESVQAYLEYGDEFQVQVASNAHQAWDFLQKNPPDLVISDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G + K+++E+ + IPV+ +TA M D + GC+AYISKP +K Sbjct: 61 EVDGYQFLKKLRENQRYETIPVVFLTARGMTSDRIQGYNAGCDAYISKPFDPEELEAIVK 120 Query: 118 KYIGE 122 + Sbjct: 121 NLLER 125 >gi|160890899|ref|ZP_02071902.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492] gi|156859898|gb|EDO53329.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492] Length = 658 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE ++L L++ Y NG EA+ + D+I+ D+ + + G+E Sbjct: 406 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNEDIDLIVSDVMMPVMDGIE 464 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K EL IPVI +TA + D + G +A+ISKP +L++ I+ + Sbjct: 465 FCRCVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLL 521 >gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1] gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 1616 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN+LN ++ +L+ +G+ +G AL R++ D+++MD+Q+ + G+ Sbjct: 1279 ARILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGV 1338 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + +P++A+TA AM+ D +R G +I+KPI + ++I Sbjct: 1339 AATREIRRLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRWI 1396 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 ++V++V+DN+ + DL+ + +G+EA++ ++ +++++D ++ Sbjct: 1130 RRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMP 1189 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E + ++ VTA+ + I + G E + KP+S SI +TI Sbjct: 1190 GMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIM 1249 Query: 118 KYIG 121 + G Sbjct: 1250 RLFG 1253 >gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1767 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 77/119 (64%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+ I++ EL E+PVIA+TA AM GD+E K G +I+KPI +++ +T+ KY+G Sbjct: 1484 QATQAIRKRPELAELPVIAMTANAMAGDKEMCLKAGMNDHIAKPIEVNLLYQTLLKYLG 1542 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +DN + R +E+ G+ R+G EA+ Q + V ++D ++ + G+E Sbjct: 1284 ILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVALIDWKMPNLDGIET 1343 Query: 65 TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 KQIK+ + + P ++ V+A A + +I G YISKPIS S ++ I +G A Sbjct: 1344 AKQIKQLA--KNAPRILMVSAHATQEFLSQIEALGLAGYISKPISASRLLDGIMNSLGRA 1401 >gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 269 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D ++ ++ +GY + +G EAL L Q +PD++++D+ L ++ G Sbjct: 24 ATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLPKLDGF 83 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 84 AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|312959784|ref|ZP_07774300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311285950|gb|EFQ64515.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 774 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 61/114 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G + +G EAL+L + D+++MD + + G Sbjct: 651 ARILLVEDNPVNQLVAKGMLGKLGCEVIVAAHGGEALKLLEEQPFDMVLMDCNMPVMDGY 710 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E ++QI+ ++P++A+TA AM + ER R G Y++KP + Sbjct: 711 EASRQIRRSGRWPDLPIVALTANAMAEERERCRAAGMNDYLAKPFRREELNALL 764 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 64/116 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+DN K+ + SGY +T G ALE ++ P+VI++D+ + +++G Sbjct: 572 MSKILVVDDNLNTRKMLCRHLTKSGYEVSETDRGKIALEKIKEELPEVILLDVMMPDMTG 631 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ +Q+++ + + I +I +TA + G + Y++KP +S + I+ Sbjct: 632 FEVCQQLRKTPQYELIYIIMLTALTDSKYKIEGLDKGADDYVTKPFDISELLARIR 687 >gi|70731962|ref|YP_261704.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5] gi|68346261|gb|AAY93867.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5] Length = 243 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D++ +L + G+ T +G + D++I+D+ L + G Sbjct: 5 SKSILLVDDDQEIRELLETYLSRCGFQVRSTADGAGFRLALNEAPSDLVILDVMLPDEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ + ++P+I +TA + + D + G + Y+ KP S IK + Sbjct: 65 FSLCRWIRQHPKRSQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D+ + R ++ +GY +G AL L + KPD++++D+ L + GL Sbjct: 9 ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E E +PV+ +TA + D + G + Y+ KP S + + + Sbjct: 69 EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDNE+N ++ R+L+E G +G A+ + ++MD+Q+ + GL Sbjct: 884 ARILLVEDNEINQQVARELLEGGGLEVAVAEDGERAVAMVEAGAYAAVLMDVQMPVMDGL 943 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ + +P+IA+TA AM D + G +I KPI + T+ +++ Sbjct: 944 EATRRIRANPAHATLPIIAMTAHAMDQDRRKTLDAGMNDHIGKPIDPAELYATLARWL 1001 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEISG 61 V++V+DN + ++F D++ + + +G EAL + ++ +++D ++ + G Sbjct: 736 HVLVVDDNASSRQIFSDILLSLRFSVTTAGSGEEALRALAREDQNIRVVLLDWKMPGMDG 795 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I+ S + ++ VTAF + G +A++ KP+ S+ T+ +G Sbjct: 796 TACARHIRAMSLPRRPAIVMVTAFGREEVRREAENVGVDAFLLKPVGRSVLFNTLAAVVG 855 Query: 122 EA 123 A Sbjct: 856 VA 857 >gi|289626956|ref|ZP_06459910.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866134|gb|EGH00843.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 782 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQDHFDLVLMDCNMPVMDG 717 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776 >gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT] gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT] Length = 222 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 72/119 (60%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED E KL +D + SG+ L+ +G++ L++ +++ D++I+DI + + G + Sbjct: 3 ILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVFKENSVDLVILDIMIPCLDGWTV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K I+++S+ +P+I +TA + + D+ + GC+ Y++KP S + + +K + + Sbjct: 63 CKSIRQNSK---VPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRS 118 >gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp. MED222] gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator [Vibrio splendidus LGP32] Length = 1129 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 I +D +N+++ ++ GY +G E +EL + KP+++++DI + +SG ++ + Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + ++P+I +TA D R + G Y+SKP + I ++ Sbjct: 787 ALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL 840 >gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1299 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN ++ + ++ + +G E +A Q KPD+II D+ + ++ G+E Sbjct: 1053 KILLVEDNNDFRHYLQEELRRH-FVVFEASDGEEGEAVALQQKPDIIITDLMMPKMDGIE 1111 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+IK + ++ IP+I +TA A +EER K G +AY++KP I I + + Sbjct: 1112 LCKRIKHNIDVSHIPIILLTASASMENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1170 >gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED + + ++ GY +G+ L R+ P+++I+D+ L + GLE+ Sbjct: 6 VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +P++ +TA D+ G + Y+ KP S+ + ++ ++ Sbjct: 66 ARRIRK---TSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120 >gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 227 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++VED L D ++ SG+ A +G ++ +++ PD+II+D+ L Sbjct: 1 MKKKILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++I+ IP+I VTA + D + G + YI KP S + +K Sbjct: 61 GFEICREIRS---FSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D Y L+ R+G EAL L + + ++I+DI L E+ Sbjct: 1 MTKTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ ++P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I EDNE N+ + GY + ++G +A++LA+ P++I+MDIQ+ I GLE Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1720 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +I++ + ++P+IA+TA AM GD E+ + G Y++KP+ L I++ + Sbjct: 1721 INRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776 >gi|159899985|ref|YP_001546232.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159893024|gb|ABX06104.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 412 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++ +DNE +L ++ GY +G + L A+ PD++I+DI + I Sbjct: 1 MPERILVADDNEALSQLLELILVEHGYEVTLANDGGDLLAKAQLQIPDLMIVDILMPRID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +Q++ D+ L IP+I +TA D + G + YI KP + + ++ + Sbjct: 61 GYEAIRQLRNDTRLAHIPIIVLTARTAIEDVVTGFELGADDYIVKPFQMPELLARVRAQL 120 Query: 121 GEA 123 A Sbjct: 121 LRA 123 >gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator PHOP [Mycobacterium tuberculosis H37Rv] gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator PHOP [Mycobacterium bovis AF2122/97] gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 94_M4241A] gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T92] gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T17] gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis 210] gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN R506] gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN V2475] gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium tuberculosis H37Rv] gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium bovis AF2122/97] gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CDC1551A] gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis W-148] gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] Length = 247 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 21 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 81 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138 Query: 123 A 123 A Sbjct: 139 A 139 >gi|330897241|gb|EGH28660.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. japonica str. M301072PT] Length = 783 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 777 Score = 34.7 bits (80), Expect = 4.7, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 26/93 (27%) Query: 37 EALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFA--MKGDEERI 94 EA++L PD++I E I+ +P++ VTA+ M G++ Sbjct: 568 EAVDL--DGSPDLVIT-------DCPECLFAIR---PTTPVPILLVTAYGNFMPGEQVAA 615 Query: 95 R-----KGGCEAYISKPISLSIFMETIKKYIGE 122 + +P++ + T+++ +G+ Sbjct: 616 LAPLQQQA-------RPLARNALYHTLRRILGQ 641 >gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 250 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 ++++VED EL ++ +E GY + +G A+E + + D++++D+ L Sbjct: 20 RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ +P++ ++A + D + G + Y++KP S+ + Sbjct: 80 PQINGLDICRLLRHQGNA--VPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185] gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRNILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P+I +TA + D + G + Y++KP S I + K+ I Sbjct: 61 GWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLI 117 >gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 224 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + + GY +G+ L AR+ +PD+I++D L S Sbjct: 1 MTAHILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLPGFS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ + ++PVI +TA D G + Y+ KP S+ + ++ ++ Sbjct: 61 GVEVCRRLRATGD--KVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium) chloroplast gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium] gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium] Length = 255 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D ++ + GY L +G AL L + P+++++D+ + +I G Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYG 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +IP+I +TA D + G + Y+ KP S I+ + Sbjct: 69 VCQEIRKES---DIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124 >gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 235 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++V+D + L +E GY + +G ++LA D II+D+ L ++ G Sbjct: 1 MKKILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EITK+++++ E P++ +TA D + G + Y++KP S + +K Sbjct: 61 IEITKKLRQEKI--ETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 226 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED + ++ ++ SG+ + NG + L + H D+I++DI L GL+ Sbjct: 5 TILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDLILLDIMLPGKDGLQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ + ++P+I +TA + D + G + YI KP S + +K + + Sbjct: 65 VCKEVR---TISQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRRS 121 >gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51] gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I +D + + ++ G+ +G EAL+ A + PD+II+D+ + ++SG+E Sbjct: 6 HILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAYETAPDLIILDLMMPKLSGME 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ ++P+I +TA + D+ + G + YI KP S + +K + Sbjct: 66 VCRTLRK---TTDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRR 121 >gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 229 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E +L +D +E SG+ +G L+ A + D+ I+D+ L + G Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+I+E + PVI ++A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKKIRE---TKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia hollisae CIP 101886] Length = 1125 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+++ + + GY NG +A+E KP ++++D+ + E+SG E+ Sbjct: 719 ILVVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIESVTMEKPALMLLDVMMPELSGYEV 778 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++E E+P+I ++A D+ + G Y++KP + I+ YI Sbjct: 779 CTHLRERYSRAELPIIMLSALGQVQDKVKGFDAGANDYLTKPFNKDELSARIRAYI 834 >gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp. CNPT3] gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp. CNPT3] Length = 242 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D++ +L + ++ Y NG E + + + D+II+D+ L GL Sbjct: 4 KHLLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLMLPGEDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ S IPVI ++A + D+ + G + YISKP + + IK + Sbjct: 64 TLCRNLRAQS---NIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS] gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS] Length = 236 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED+ L + +E +GY + +G EAL+ ++H +++++DI L I G E+ Sbjct: 6 ILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIMLPGIDGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+++ + ++P++ +TA + D+ + G + Y+ KP S I+ + Sbjct: 66 CRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123 >gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1] gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1] gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1] gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1] gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L ++ +GY + +G +AL L I++D+ L ++ G Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+++++ + P+I VTA + D+ + G + YI+KP S + IK I Sbjct: 63 MEVTKKLRQEKV--QTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 263 Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+E +L E G++ +G++ LA Q PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDEDMRELVAGHFEHGGFVVETADDGIKGQALALQASPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L M +K + + Sbjct: 65 CQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALLRRS 123 >gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] Length = 240 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 14 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 74 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 Query: 123 A 123 A Sbjct: 132 A 132 >gi|315185413|gb|EFU19185.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta thermophila DSM 6578] Length = 431 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D N++L +++ YI +G EAL + D+I++DI + E+ G E Sbjct: 10 RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTPFDLILLDIMMPEMDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ + + ++IP+I ++A A + + + G + Y+ KP ++ ++ + Sbjct: 69 VCRRVRNNPKTRDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQL 125 >gi|258625182|ref|ZP_05720098.1| response regulator rpfG [Vibrio mimicus VM603] gi|258582557|gb|EEW07390.1| response regulator rpfG [Vibrio mimicus VM603] Length = 377 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 70/124 (56%), Gaps = 4/124 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M+ ++IV+DN N L L++ Y L G +AL + + KPD++++DI + Sbjct: 1 MMSELETILIVDDNPENRALLAGLLKPH-YRLLVATGGAQALTICHKQKPDLVLLDIMMP 59 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G E+ ++++ D ELQ+IPVI +TA + DE+R G YI KPIS I + + Sbjct: 60 EMDGYEVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTR 119 Query: 118 KYIG 121 ++ Sbjct: 120 THLR 123 >gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603] gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ I Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLI 117 >gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii] Length = 1441 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +V+ V+D+ +N + ++L+ GY LQ +G EAL++ + + PDVI++D+ + +SG Sbjct: 721 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 780 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E L IPVI ++A + + G Y+ KP + I ++ Sbjct: 781 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 840 >gi|330876740|gb|EGH10889.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 273 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 149 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDG 208 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 209 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 267 >gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 221 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 68/122 (55%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ ++ + G L+ NG+EAL+L Q DV+I+D+ L +++G Sbjct: 1 MARVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLLPQA--DVVILDLMLPQLTG 58 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ D ++P++ +TA + + + + G + Y++KP S + ++ + Sbjct: 59 WQVAQELRRD--YPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|116050828|ref|YP_790349.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115586049|gb|ABJ12064.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 786 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ +H D+++MD + + G E Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779 >gi|330890495|gb|EGH23156.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. mori str. 301020] Length = 237 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 54/118 (45%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+V+D++ +L + +G+ +G + + D++I+D+ L + G + Sbjct: 1 MLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDGFSLC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K I++ +PVI +TA + + D + G + Y+ KP S IK + A Sbjct: 61 KWIRQHPRQPHVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRA 118 >gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 226 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 + K+++V+D+ +L + +E +G ++ +G+EAL + Q D+++MDI + + Sbjct: 1 MAKILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVMEQVSVDLVVMDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ ++ IPV+ +TA + + G + Y+ KP + + +K + Sbjct: 61 GWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 231 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +KK V+IVED +L + +G+ + +G+ A PDVI++D L Sbjct: 1 MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL + ++ + DS + +P++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1765 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 77/119 (64%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + TK I++ EL ++PVIA+TA AM GD+E + G +I+KPI +++ +T+ KY+G Sbjct: 1484 QATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLG 1542 Score = 117 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +DN + R +E+ G+ R+G EA+ Q + V ++D ++ + G+E Sbjct: 1284 ILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIET 1343 Query: 65 TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 KQIK+ + + P ++ V+A A + +I + G YISKPIS S ++ I +G + Sbjct: 1344 AKQIKQ--QTKNAPRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRS 1401 >gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 231 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLI-DNSIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896] Length = 230 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I+ED + + + ++ GY + +G++ + Q D+I++DI L ++ Sbjct: 1 MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+E S +P+I VTA + D+ + G + YI+KP SL + +K I Sbjct: 61 GFDVCRHIREKS---SVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D +++ ++ GY L + G EA+E+A II+D+ L ++SG Sbjct: 1 MSTILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPDLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ QI+++S +P++ +TA + + D R G + Y+ KP S + ++ + Sbjct: 61 EEVCVQIRKESR---VPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] Length = 233 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + NG +AL ++P+++++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ S+ +P+I ++A D+ + G + YI KP + ++ + Sbjct: 65 QVCRELRAKSQ---VPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRR 121 >gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++ T G+ + +G EA+ + R+ KPD++++D+ L + Sbjct: 1 MTSRILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ I+ +S P+I +TA + D + + G + Y+ KP + + I+ + Sbjct: 61 GIEVCSSIRAESGT---PIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRL 117 Query: 121 GEA 123 A Sbjct: 118 RPA 120 >gi|319642327|ref|ZP_07996985.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317386050|gb|EFV66971.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1343 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1087 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1145 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1146 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1204 >gi|313107966|ref|ZP_07794135.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310880637|gb|EFQ39231.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 772 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ +H D+++MD + + G E Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 709 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 710 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 765 >gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 226 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ + + GY ++ +G EAL+ + ++I+D+ + + G Sbjct: 1 MNTILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVMMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E + P+I ++A D+ G + Y+ KP + + +K + Sbjct: 61 IRACLKIRE---ISNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254413389|ref|ZP_05027160.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180009|gb|EDX75002.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 403 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 65/117 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ + D + SG+ +G AL+ +PD+II+D+ + I G E Sbjct: 10 KLLIVDDQPHNLGILFDFLTRSGFKIFVALDGESALQRTEVTEPDLIILDVMMPGIDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K++ Q+IP+I +TA + D+ + K G YI+KPI + I+ +I Sbjct: 70 TCKRLKQNPSTQDIPIIFMTALSDTVDKVQGFKLGAVDYITKPIHQEEVLSRIQTHI 126 >gi|66046841|ref|YP_236682.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257548|gb|AAY38644.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 796 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 673 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 732 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 733 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 790 >gi|299144918|ref|ZP_07037986.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298515409|gb|EFI39290.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1346 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+DNE R +E Y NG EA E+ ++ PD++I D+ + ++ G E+ Sbjct: 1100 LIVDDNEDFRIFMRYSLELQ-YRVKLAVNGKEAWEMMQEELPDLVISDVMMPQMDGNELC 1158 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK+D IPVI +TA + + G + Y++KP +++I + I+K I Sbjct: 1159 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLI 1213 >gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase [Azospirillum sp. B510] Length = 310 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D N+ + +++ Y +G ALEL + PD++++DI + + G E Sbjct: 7 KILVVDDIPSNVHVLSRILKDD-YDIYFATDGERALELVQSRMPDLVLLDIMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D +IPVI ++A DE R + G +I+KPIS I ++ ++ Sbjct: 66 VCRRIKADPATHDIPVIFISAKGEVEDETRGLEVGAIDFITKPISPPIVRARVRNHL 122 >gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] Length = 244 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D++ +L R +E+ GY + +G EAL + D++++DI + I G ++ Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++E +PVI V+A D+ G + Y++KP + + ++ + A Sbjct: 71 LRRVRE---TSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRA 126 >gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM 30120] gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM 30120] Length = 232 Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL+ D++++D+ + + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ + + PVI +TA + D+ + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQ---IHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|283851785|ref|ZP_06369063.1| histidine kinase [Desulfovibrio sp. FW1012B] gi|283572905|gb|EFC20887.1| histidine kinase [Desulfovibrio sp. FW1012B] Length = 310 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N ++L+ G+ +G EALE R D+++MDI + + G+E Sbjct: 189 KILLAEDNPINRLFLQELLRNEGHSITYAADGQEALEALRTEAFDIVLMDISMPRMDGIE 248 Query: 64 ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+E + +IP++A+TA A + D ER K G + Y+SKPI + E + KY Sbjct: 249 ATRRIRESVSGKINAKIPIVALTAHAFRVDAERFLKAGMDGYLSKPIDPAKLKEILGKY 307 >gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676] gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL+ ++ D++I+DI + +++ Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 631 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + ++ + GY +G +AL+ QH I+MD +L + G E Sbjct: 512 VLLVEDNPVNQTVIEAMLRSLGYQVSLVGDGQQALQSVAQHAYAAILMDCRLPLMDGYEA 571 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ + Q+IP+IA+TA A++GD E G Y++KP + +++++ Sbjct: 572 TRRIRQQASGQQIPIIALTANALQGDREACLAAGMNDYLAKPFKRADLQRILERWL 627 >gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 237 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ +G AL+L Q+ ++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01] gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01] Length = 224 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + + ++ GY +G+ L R+ P+++I+D+ L + G+E+ Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLMLPVMDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ +P++ +TA D+ G + Y+ KP S+ + ++ ++ Sbjct: 66 AKRIRK---TSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120 >gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 228 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D E ++ + G+ + + G EAL+ A++ P ++++D L E+S Sbjct: 1 MPHTLLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWMLPEMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +++++ + +I VTA + D+ + G + YI+KP SL I+ + Sbjct: 61 GIDVCRELRK---TSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 225 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G +ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ ++L + +G+ +G AL A+ H+PD++++D+ L ++ G Sbjct: 8 ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++E PV+ +TA D+ R G + Y++KP SL I+ + Sbjct: 68 EVIRMLRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125 >gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +++ ++I ED+ +L + GY L+ +G EA+ L + + D++I+DI + + Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + I+E +P+I ++A D+ G + Y++KP + + + Sbjct: 63 DGYEVVRVIREQQ--YRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQ 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ + + + +E GY +G+EA+E + PD +++D+ L + G+ Sbjct: 8 ARILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEKVHPDAVMLDVMLPGLDGI 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E +P++ V+A D + G + Y++KP + + ++ + Sbjct: 68 SVCRRIRE---TSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRR 124 Query: 123 A 123 A Sbjct: 125 A 125 >gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + G+ ++ +G EA+++ Q +I++D+ + ++ G Sbjct: 5 KILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K I++ ++P++ +TA + DE + K G + YISKP S I + ++ + Sbjct: 65 EVLKTIRK---YSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 1160 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 47/117 (40%), Positives = 71/117 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +MIV+D+ N+ + +E G + NG ALEL R +K D+I+MDI + + G Sbjct: 1039 KTIMIVDDDHRNVFVLAAALEDYGANIIAAENGKMALELLRTNKVDLILMDIMMPVMDGY 1098 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E + IK D EL+ IPVIAVTA ++K D+E+ + G + YISKP+ + + IK + Sbjct: 1099 ETIRAIKGDKELKGIPVIAVTAKSLKSDKEKCIEAGADDYISKPVDYDVLIRLIKAW 1155 Score = 87.1 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 22/126 (17%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++EDNE K +++ + G+ + +G E LE A+ + D I++DI L ++SG+E+ Sbjct: 794 ILVIEDNENFAKYLKEINDGMGFDTIIAGSGKEGLETAKNTRVDGILLDIMLPDMSGIEV 853 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDE----------------ERIRKGGCEAY----IS 104 +++K EL +IPV ++ ++ D+ ERI G +A I Sbjct: 854 LRELKSIVELGKIPVHVIS--DLEEDDVSQIIAYLLNYSAQHPERIMIVGGDAIWQSTIK 911 Query: 105 KPISLS 110 KP Sbjct: 912 KPFEER 917 >gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV+IV+D+E ++ + +E+SGY + +G A + ++KPD++++DI L + G+ Sbjct: 6 AKVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQEDGI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K I++ PVI +TA D+ + G + YI KP + +K + Sbjct: 66 DVLKWIRKAD---NTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952] gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952] Length = 226 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E +++ + + Y + +G ALE ++ PD++++D+ L + GL Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E + +P+I +TA + + D K G + Y+ KP S + I+ + Sbjct: 62 VCRKIRE---VSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117 >gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+ +V+D +++ + +E G+ + NG L+ ++ KPD++I+D+ L IS Sbjct: 1 MDKKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I++ +P++ +TA + D+ G + Y++KP S + +K + Sbjct: 61 GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|260909644|ref|ZP_05916341.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 472 str. F0295] gi|260636255|gb|EEX54248.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 472 str. F0295] Length = 935 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++++DN + Y + +G + LE A Q PDVI+ D+ + I GL Sbjct: 683 QRVLVIDDNADVAAFIGSQLSDK-YGIIYAHDGQDGLEKAEQLVPDVIVTDLMMPGIDGL 741 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + IP+I VTA + D + + G +AY+SKP + ++K + + Sbjct: 742 EVCRRIRANEVTSHIPIIVVTAKITENDRVKGLEAGADAYLSKPFNRDELRMRVEKLLEQ 801 >gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 239 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ + NG EAL A +H PD+ ++D+ L ++ G Sbjct: 11 ARLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 71 TVTRRLRA--AGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128 >gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D E ++ R+++ GY L+ +G EA++ HK +I+D+ + ++ G E Sbjct: 7 TVLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVMMPKLDGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++ S L PV+ +TA + + D+ + G + Y++KP + + ++ + + Sbjct: 67 TLDILRKQSGL---PVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRS 123 >gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 6/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQE 58 +K K+++V+D + KL RD + Y ++ NG EA+++ + D+II+D+ + + Sbjct: 7 MKQLKILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPK 66 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E ++I++ S+ +P+I +TA + + DE + G + YISKP S I + + Sbjct: 67 MDGWEACREIRKISK---VPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDA 123 Query: 119 YIGE 122 + Sbjct: 124 ILRR 127 >gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 233 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D + ++L R +E GY +G +ALE+ +PD++++D+ L I Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ + I+ D +Q P++ ++A + D + G + YI+KP S I + I+ Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. 16M] gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella melitensis bv. 1 str. 16M] gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] Length = 255 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 28 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 87 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 88 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 147 Query: 119 YIGEA 123 + A Sbjct: 148 MLRRA 152 >gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185] gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +H+ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWTVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117 >gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 230 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G + Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIENRNFKFVLLDIMMPKMDGWDT 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKKIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D+ L ++ + GY NG EALEL PD++I+D+ + E+ G Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E KQI+ S +PVI +TA D + G + Y+SKP + + IK + Sbjct: 61 FETLKQIRNKS---SVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED +L RD +E +G+ +G + L+ A + D+II+DI L ISG Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLPGISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I KQI+ + +P++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FDICKQIRA---VHNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 230 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++V+D ++L + GY + +G EA+ +++DI + ++ Sbjct: 1 MMD-ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +I+ +P+I VTA D + K G + YI+KP + I+ + Sbjct: 60 GWETCNRIRS---FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVL 116 Query: 121 GEA 123 + Sbjct: 117 RRS 119 >gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1356 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 73/119 (61%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G + R+G E+L R++ D+++MDI + + G Sbjct: 1235 RTVLVVDDDMRNIFALTSVLEEKGMQVVVARDGSESLTRLRENPEIDLVLMDIMMPVMDG 1294 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I++D +L+++P+IA+TA AMKGD+ + G Y++KP+ + + ++ ++ Sbjct: 1295 YEAMREIRKDPKLKDLPIIALTAKAMKGDKNACIEAGANDYLAKPVDMDKLLSLLRVWL 1353 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+ED++ ++ RD G+ AL +G L A H P II+D L ++G Sbjct: 967 KSLLIIEDDQHFARILRDQAREMGFKALLAADGETGLHFADFHGPSAIILDNILPGMNGW 1026 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLS---IFMETIKK 118 + +++K D + + IP+ ++A D + G A+++KP+ L +E I Sbjct: 1027 TVMERLKNDPKTRHIPLSFISA----EDRSLEAMRMGALAFLTKPVELETLRTLLERIDS 1082 Query: 119 YI 120 +I Sbjct: 1083 FI 1084 Score = 96.4 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 53/104 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++V+D+ L + R LI + +G EAL L + D +I+D+ L ++SG Sbjct: 1088 MRRLLVVDDDALQRESIRALIGNGDVETVTAASGAEALGLLKSQNFDCMILDLGLNDMSG 1147 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ + ++ +PV+ T + +EER E+ I K Sbjct: 1148 FDVLRTLRSGPTPSTLPVVVYTGRDLSEEEERRLSRYAESIIVK 1191 >gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330] gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071] gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330] gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071] gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 226 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E +++ + + Y + +G ALE ++ PD++++D+ L + GL Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E + +P+I +TA + + D K G + Y+ KP S + I+ + Sbjct: 62 VCRKIRE---VSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117 >gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + ++ G+ NG +AL LA ++ D+ ++DI L + G E Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLPGMDGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +PV+ ++A + D+ + G + Y++KP + + ++ + Sbjct: 67 LCRRLRSKT---TVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122 >gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] Length = 234 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G +AL + P+++++D+ L I G Sbjct: 5 QKILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCREIRAR---ANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121 >gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 227 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + R + +GY +G AL + +PDV+I+D+ + + GLE Sbjct: 2 RVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + ++PV+ +TA D G + Y+ KP +L + ++ + + Sbjct: 62 TCRRLRAAGD--DVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRS 119 >gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5] gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5] Length = 227 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + K G + Y+ KP +LS I+ + + Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRRS 120 >gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 243 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L R + G+ + +G L + D+I++D+ + GL Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + + + Sbjct: 70 ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126 >gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905] gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905] Length = 230 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED+E ++ + + G+ NG EAL+ D++I+DI + +++ Sbjct: 1 MQKHILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K I+E + L P+I ++A D+ G + YI+KP S+ F +K I Sbjct: 61 GLEVLKVIREQAAL---PIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii] Length = 1425 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +V+ V+D+ +N + ++L+ GY LQ +G EAL++ + + PDVI++D+ + +SG Sbjct: 705 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 764 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E L IPVI ++A + + G Y+ KP + I ++ Sbjct: 765 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 824 >gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 13 ARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 73 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621] gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y L+ R+G EAL L ++ + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRQA 122 >gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp. avium ATCC 25291] gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] Length = 239 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 13 ARVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 73 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 228 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K VM+VED L RD +E G+ +G EA + Q KP ++I+D+ + + G Sbjct: 1 MKHVMLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFLQRKPSLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S +IP+I VTA + D G + YI KP S + ++ + Sbjct: 61 LTICRKVREQS---DIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 235 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D ++L + G+ +G + L++AR +PD I++D+ + + G Sbjct: 8 ARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + PV+ +TA D+ G + Y++KP SL + ++ + Sbjct: 68 GLLRRLRADGV--DAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IVED ++ +G+ + +G AL ++ + D++++D+ L ++S Sbjct: 1 MPSHVLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +++K++ + +PVI VTA + D + G + Y+ KP S+ + + + Sbjct: 61 GTEICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAIL 120 Query: 121 GEA 123 + Sbjct: 121 KRS 123 >gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF domain-containing protein [Geobacter bemidjiensis Bem] Length = 947 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED+ ++ +++ + +G + +E+ RQ + D+I+MD+Q+ + G + Sbjct: 828 RLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQGEYDLILMDVQMPRMDGFQ 887 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+E + IP+IA+TA AMK D+ R G + YISKPI+ I+K +G Sbjct: 888 ATRAIREQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKE---CIEKVMG 942 >gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26] gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932] gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55] gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34] gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79] gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196] gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291] gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58] gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196] gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D L + YI + +G++AL ++ D+ I+D+ L ++ Sbjct: 1 MSGKILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLPGVN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E P+I +TA + D+ G + Y++KP + +K I Sbjct: 61 GFSLCQKIREKYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|22298696|ref|NP_681943.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294876|dbj|BAC08705.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 391 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ L R + GY +G E + +A KP +II D + E+ GLE+ Sbjct: 10 ILVIDDDPTTRLLLRKTLRDLGYSVSVASHGREGIAIATAEKPALIICDWMMPELDGLEV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + IK+D EL I +TA D + G + ++SKPI + I+ + Sbjct: 70 CRHIKQDEELSRSFFILLTAKGELQDRIQGLDAGADEFLSKPIDPNELRARIQAGLR 126 >gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 230 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L I +G+ A++ + A L R+ PD+I++D L ++ Sbjct: 1 MPANILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLMRETIPDLILLDWMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE + +K D+ + IP+I +TA + D+ R + G + Y++KP S IK + Sbjct: 61 GLEFARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + Q K D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 230 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++V+D ++L + GY + +G EA+ +++DI + ++ Sbjct: 1 MMD-ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +I+ +P+I VTA D + K G + YI+KP + I+ + Sbjct: 60 GWETCNRIRS---FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVL 116 Query: 121 GEA 123 + Sbjct: 117 RRS 119 >gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT] gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V++V+D++ + + ++ G + ++G++AL L ++ + +I+MDI + ++ Sbjct: 1 MSQNNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G++ T +I+E ++IP+I ++A + D+ G + Y++KP + + +K Sbjct: 61 DGIKATFKIREK---KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|323493471|ref|ZP_08098593.1| response regulator [Vibrio brasiliensis LMG 20546] gi|323312294|gb|EGA65436.1| response regulator [Vibrio brasiliensis LMG 20546] Length = 376 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N L L++ Y L NG +AL LA PD+I++DI + E+ G E+ Sbjct: 8 VLVVDDNAENRVLLSGLLKPH-YKVLVATNGKQALSLAESKLPDIILLDIMMPEMDGYEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K++S+ IPVI +TA DE+R + G YI KPIS I + I ++ Sbjct: 67 CLRLKDNSDTAFIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLARIATHL 122 >gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ ++ D + GY L+ +G +ALEL + H D++I+DI L +I G Sbjct: 1 MNKILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSVDLVILDIVLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I+++S IP+I +TA + + D + G + Y+ KP S + M +K+++ Sbjct: 61 WSVCRRIRKNS---NIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFL 116 >gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 224 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 65/114 (57%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 ED E +L + +E + Y + NG++A+E+A++ PD+I++DI L G ++ K+I Sbjct: 2 EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLPGKDGYDVCKEI 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ I +I +TA + + D+ + G + YI+KP S+ + +K + Sbjct: 62 RNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRR 115 >gi|212692193|ref|ZP_03300321.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855] gi|212665314|gb|EEB25886.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855] Length = 1373 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ + L + Y + NG E + +AR+ PD++I D+ + ++G E Sbjct: 1113 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1171 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KED + IP+I +TA + + + G + YI KP + I +K+ I Sbjct: 1172 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1228 >gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916] Length = 265 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L +E +G+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D IP++ +TA D+ G + Y++KP L +K + + Sbjct: 65 CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALLRRS 123 >gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 224 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59 M+ KV+++ED E + + +E +GY L NG E L+L ++K +I++DI L +I Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG + K I+E ++PV+ +TA + D+ + G + Y+ KP S + +K Sbjct: 61 SGWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAI 117 Query: 120 IGE 122 + Sbjct: 118 LSR 120 >gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D+ + R ++ +GY +G AL L + KPD++++D+ L + GL Sbjct: 12 ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E E +PV+ +TA + D + G + Y+ KP S + + + Sbjct: 72 EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 128 Query: 123 A 123 A Sbjct: 129 A 129 >gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLL-DNTVDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IVED ++L + +G+ NG +A+ ++H+PD+I++D+ L ++ G Sbjct: 7 ARLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ + PV+ +TA D+ R G + Y++KP SL + I+ + Sbjct: 67 DVVRRLR--GGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRR 124 >gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) [Verrucomicrobium spinosum DSM 4136] Length = 2178 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60 +KV++V+D+ N+ L+E L NG +A++L ++ PD+ ++MDI + E+ Sbjct: 2058 RKVLVVDDDARNIFALSILLENHDMEVLSVTNGRQAVKLIEEN-PDLSMVLMDIMMPEMD 2116 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++ E + +P+IA+TA AMKGD E+ + G YI+KP++ + ++ ++ Sbjct: 2117 GYQTMREIRKNPEFRTLPIIALTAKAMKGDREKCLEAGASDYIAKPVNTEQLLSLLRVWL 2176 Query: 121 GE 122 Sbjct: 2177 HR 2178 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 1/114 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VEDNE+ + ++L+ + G EAL L D ++D++L ++SG Sbjct: 1911 MKRLLVVEDNEIERESIKELLGGRDIQIVTVGRGKEALGLLLDQHFDCAVLDLRLPDMSG 1970 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ + I+++ LQE+P++ T + DEE+ + ++ + K + S ++ Sbjct: 1971 FELLETIQKEPTLQEVPIVVYTGKDLSPDEEKQLRQVAKSVVLKDVQSPERLLD 2024 Score = 87.5 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ L G+ L G +AL LARQ++ I +DI L ++ G + Sbjct: 1793 LIVEDDVHYARVLLGLARDRGFKGLVATRGQQALALARQYQVTAITLDIFLPDMLGWTVL 1852 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIK 117 +K D + IPV ++ + + G +Y+ KP + + IK Sbjct: 1853 NNLKLDPTTRHIPVQIIS---LDEERRHGLSRGAFSYMVKPATTDDLEMAFDRIK 1904 >gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++ T G+ +G +AL + KPD++++D+ L + Sbjct: 1 MTARILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ I+ +S IP+I +TA + D + + G + YI KP + + I+ + Sbjct: 61 GIQVCDLIRAESG---IPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRL 117 Query: 121 GEA 123 A Sbjct: 118 RPA 120 >gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + +GY +Q +G +AL +P+++I+D+ + + G E Sbjct: 2 KILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ S +PV+ +T + D R GG + Y++KP S ++ + Sbjct: 62 VCRRIRAQSI---VPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRR 117 >gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] Length = 1160 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 47/117 (40%), Positives = 71/117 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +MIV+D+ N+ + +E G + NG ALEL R +K D+I+MDI + + G Sbjct: 1039 KTIMIVDDDHRNVFVLAAALEDYGANIIAAENGKMALELLRTNKVDLILMDIMMPVMDGY 1098 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E + IK D EL+ IPVIAVTA ++K D+E+ + G + YISKP+ + + IK + Sbjct: 1099 ETIRAIKGDKELKGIPVIAVTAKSLKSDKEKCIEAGADDYISKPVDYDVLIRLIKAW 1155 Score = 87.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 22/126 (17%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++EDNE K +++ + G+ + +G E LE A+ + D I++DI L ++SG+E+ Sbjct: 794 ILVIEDNENFAKYLKEINDGMGFDTIIAGSGKEGLETAKNTRVDGILLDIMLPDMSGIEV 853 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDE----------------ERIRKGGCEAY----IS 104 +++K EL +IPV ++ ++ D+ ERI G +A I Sbjct: 854 LRELKSIVELGKIPVHVIS--DLEEDDVSQIIAYLLNYSARHPERIMIVGGDAIWQSTIK 911 Query: 105 KPISLS 110 KP Sbjct: 912 KPFEER 917 >gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 233 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + Y +G +AL +KP+++++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S ++P+I ++A D+ + G + YI KP + +K + Sbjct: 65 QVCREIRAKS---DVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRR 121 >gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198] gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL+L D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLDA-SVDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++++ + PVI +TA D + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQNFQT---PVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|119486865|ref|ZP_01620840.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] gi|119456158|gb|EAW37291.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC 8106] Length = 564 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I+ED + + +L+E + NG++ LE A++ PD+I+ D+ + ++ G Sbjct: 1 MTKVLIIEDEDSIRENIAELLEIEDFEVETAANGIQGLETAKKTIPDLILCDVMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ SE P I +TA A + D + G + Y++KP S +E I + Sbjct: 61 YQVLTELRKHSETANTPFIFLTAKAERMDLRQGMNLGADDYLTKPCSSQELLEAIVARLQ 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|209528442|ref|ZP_03276872.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|284054062|ref|ZP_06384272.1| response regulator receiver protein [Arthrospira platensis str. Paraca] gi|209491121|gb|EDZ91546.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|291571977|dbj|BAI94249.1| two-component response regulator (CheY subfamily) [Arthrospira platensis NIES-39] Length = 125 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 74/119 (62%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE+N + + + GY L +G E + LA+ PD+I+MD+ L G Sbjct: 1 MAKILLVEDNEMNRDMLKRRLSRKGYDVLIAEDGAEGVNLAQTQAPDLILMDMSLPIKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T++IK D++ +EIPVIA+TA AM GD E+ GC+ Y +KP+ +E I+ ++ Sbjct: 61 WQATREIKADTKTKEIPVIALTAHAMAGDREKCLAAGCDDYDTKPVEFPRLLEKIETHL 119 >gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 241 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D + +L + +E + + +G EA +A +H I++D+ L E+ Sbjct: 1 MSNEILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + +++E +E P+I +TA + + + G + YI KP S + +K + Sbjct: 61 GITVASKLREH---KETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1348 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN + D + S Y + NG EAL L ++ + D+I+ D+ + + GL+ Sbjct: 1102 KILIVEDNFDIRRYLSDELGKS-YHISEAGNGEEALALMKEQEADLILTDVMMPVMDGLQ 1160 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + KQIK++ IP+I ++A A ++ + G + YI KP S+++ I+ Sbjct: 1161 LCKQIKQNLRTCHIPIIILSAKADLKEQLEGLQVGADDYIPKPFSMAVITTKIRNLFR 1218 >gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLL-DNTVDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++I+ED + + ++ GY +G E L+ + PD+I++DI L I+G Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI ++I++ S +P+I VTA D G + Y++KP ++ + I+ + Sbjct: 63 IEICRKIRQHS---NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119 Query: 122 EA 123 ++ Sbjct: 120 KS 121 >gi|294776618|ref|ZP_06742087.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294449533|gb|EFG18064.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1441 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+VEDN + +++ + Y + +G+ ALE + PD II DI + + G+E Sbjct: 1185 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1243 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IKE+ +IP+I ++A + D + + G + YI KP S I+ I + Sbjct: 1244 LIRHIKENVNTCDIPLIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1302 >gi|254412104|ref|ZP_05025879.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181070|gb|EDX76059.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 450 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+DN N+ + + S + L +G A+E + +PD+I++D+ + + G Sbjct: 10 KLLIVDDNPTNLGFLFEYLTQSDFKVLVALDGESAIEQVQYAQPDLILLDVMMPGLDGFT 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K D Q+IPVI +TA + D+ + K G YI+KP+ + ++ ++ Sbjct: 70 TCKHLKSDPSTQDIPVIFMTALSDTVDKVQGFKIGAVDYITKPLQPEEVLCRVQTHL 126 >gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] Length = 230 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED+E ++ + + G+ NG EAL Q+ D++I+DI + +++ Sbjct: 1 MQKHILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K I+E + L P+I ++A D+ G + YI+KP S+ F +K I Sbjct: 61 GLEVLKIIREQAAL---PIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM 43021] Length = 1468 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 +KV++V+D+ N+ +++E G L NG + +E+ R D+++MDI + E+ G Sbjct: 1348 RKVLVVDDDVRNVFALTNILELHGMQVLYAENGRKGIEVLSRNEDVDLVLMDIMMPEMDG 1407 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I++ ++P+IAVTA AM+GD ++ G Y++KP+ + I++++G Sbjct: 1408 YAATAAIRKMPRFADLPIIAVTAKAMQGDRDKTLAAGASDYVTKPVDAQELLSRIQQWMG 1467 Score = 36.3 bits (84), Expect = 1.4, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 29 ALQTRNGMEALELARQHKPDVIIMDIQLQEISG-LEITKQIKEDSELQEIPVIA 81 + + ALE + +++D+ + G E + + + L+E+PV+A Sbjct: 1223 VSTANDPVTALESLNRDDYHCVVLDLGM-GHDGAAEFLRGLDDYPVLRELPVLA 1275 >gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + GY NG++ L + H D++++D+ L +SG Sbjct: 1 MTRILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ +PVI +TA + D+ + G + Y++KP S + IK + Sbjct: 61 TEVCREIR---RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V+IV+D + + + +LQ + EA + PD+I++D L S Sbjct: 1 MQKRVLIVDDEVAIRDMVAYALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T++ ++ S +EIP+I +TA + + D + G + Y+ KP S + I+ + Sbjct: 61 GLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+KK++I+ED+ +L RD +E + + +G+E L +++K D++I+DI L +I Sbjct: 1 MMKKILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I I+E+ ++IPV+ V+A + D+ + G + YI+KP S S + +K +I Sbjct: 61 GFSILHSIQEE---KDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHI 117 >gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 243 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L R + G+ + +G + + D+I++D+ + GL Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S+ P+I +TA D + G + Y+ KP + + I + Sbjct: 70 ICRRLRAASD--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 >gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 13 ARVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 73 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1134 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++E + NG EAL+L ++ +++MDI + E+ G Sbjct: 1014 KKVLIVDDDMRNIFALATVLEDKNMEVVSADNGHEALKLLAENSDIALVLMDIMMPEMDG 1073 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +QI++ +++P+IA+TA AMKGD+ + + G Y+SKP+ + ++ ++ Sbjct: 1074 YETMRQIRQSPNFRKLPIIALTAKAMKGDKAKCIEAGANDYLSKPVDTDKLISLMRVWL 1132 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+ED+ L + +G+ L G LELA HKP+ II+DI L I G Sbjct: 746 KSLLIIEDDRRFSHLLLESARETGFKCLLAEEGRMGLELAETHKPNAIILDIGLPSIDGW 805 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 + + +K+ + + IPV ++AF +K G Y+ KP+SL + I+++ Sbjct: 806 TVMEHLKDHPDTRHIPVHFISAFDQ---RLEAKKMGAIGYLIKPVSLEQLDETFQKIEQF 862 Query: 120 IGE 122 + + Sbjct: 863 LAQ 865 Score = 45.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 47/78 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++++ D+E++ + L++T AL+ ++ D II+D+ +++ SG+ Sbjct: 868 KNLLVIADSEVHQQKILALLDTKEVNITLAVTRANALQHLKKIAFDCIILDMDIEQQSGI 927 Query: 63 EITKQIKEDSELQEIPVI 80 ++ +Q++++S L ++P+I Sbjct: 928 KLLEQMQQESGLCQVPLI 945 >gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++I+ED +L RD +E + Y A G E LE +Q ++++D+ L ++ G Sbjct: 1 MERILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLMLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI +QI+E SE IP+I VTA + D R G + YI+KP + + + +K +I Sbjct: 61 YEICRQIREISE---IPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E +L +D +E SG+ NG LE A + D+ I+D+ L G Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLPGTDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+I+E ++ P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKKIRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 253 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D ++ + GY + +G++A+E+ + PD++++D+ + ++G Sbjct: 15 KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGYG 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + +IP+I +TA D + G + Y++KP S I + Sbjct: 75 VCQKIRA---ISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130 >gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] Length = 247 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 21 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGF 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 81 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138 Query: 123 A 123 A Sbjct: 139 A 139 >gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 228 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ L L+E G++ Q +G + L +A+Q D+I++D+ L +++G Sbjct: 1 MNRILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQDFDLILLDVMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ ++ P++ +TA + D + G + Y+ KP + + I+ + Sbjct: 61 FEVLRALRQR---KQTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 732 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED E+N +L R L+ G I + NG ALE + D+++MD + + G E Sbjct: 610 RVLVVEDTEMNRQLVRILLGKRGCIVEEAVNGQLALEALALKRYDLVLMDCMMPVMDGYE 669 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++++E +PVIA+TA A++GD ER + G + Y++KP S + I+K+ Sbjct: 670 ATRRLREREAESGAARMPVIALTASAIEGDRERCLEAGMDDYLAKPFSAAQLTAVIEKW- 728 Query: 121 GEA 123 +A Sbjct: 729 RKA 731 >gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED E+ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ +G AL+L R +PD++++D+ L ++ G Sbjct: 7 ARLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++E + PV+ +TA D+ + G + Y++KP SL + I+ + Sbjct: 67 TVTRRMRETG--RHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRR 124 >gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I +DN+ + + + + + +I NG +AL+ ++K D++++D+ + + G Sbjct: 1 MYKVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVMMPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++++ +P+I +TA ++ + G + YI KP S + I + Sbjct: 61 FDVCREVRK---FSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 232 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D +L +K R +E G +G EA+ +A++ + D++++D+ L + G Sbjct: 1 MAKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLPKFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E E+P+I VTA D+ + G + YI+KP ++ IK + Sbjct: 61 FEVCQAIRE---FSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 219 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED L + + +GY +G EA + Q D+I++DI L EI G Sbjct: 1 MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEGFDLILLDIMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ I+ IPVI +TA A D+ + K G + Y++KP ++ + ++ + Sbjct: 61 YELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|307946430|ref|ZP_07661765.1| response regulator receiver protein [Roseibium sp. TrichSKD4] gi|307770094|gb|EFO29320.1| response regulator receiver protein [Roseibium sp. TrichSKD4] Length = 125 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 91/122 (74%), Positives = 107/122 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY LQTR G+EAL+LARQHKPD+I+MDIQL E+S Sbjct: 1 MSKTVLIVEDNELNMKLFHDLLEAHGYSTLQTRTGIEALDLARQHKPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED +L IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ET++ YI Sbjct: 61 GLEVTKWIKEDEDLASIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVARFLETVRSYI 120 Query: 121 GE 122 G+ Sbjct: 121 GD 122 >gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1142 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++ +D+ N+ ++E +G+ NG EA+ + ++I+MD+ + E+ G Sbjct: 1021 KKLLLADDDMRNIFALSAVLEDAGFSIEIATNGKEAINKLEDYPEIELILMDVMMPEMDG 1080 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E T++I++ IP+IAVTA AM+GD E+ + G YISKP+ + + IK ++ Sbjct: 1081 IEATRRIRQVPRWANIPIIAVTAKAMQGDREQCLEAGANDYISKPVDVDKLLSLIKVWL 1139 Score = 87.9 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 2/105 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED+ + + SG+ + +G +ALE+ P II+D+ L ++SG E Sbjct: 749 RLLLIEDDTIFAADMASKAQGSGFEVVIASSGRQALEMVTGFDPTAIILDMHLPDMSGEE 808 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108 + K +K DS + IPV T + +E + K G ++ KP+ Sbjct: 809 VLKALKNDSRTRLIPVH--TVSSGDYFDEEMIKNGAIGFMQKPVD 851 Score = 80.6 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++++ED+ K D + + L + EAL L + D II+DI+L +++GL Sbjct: 872 QRILLIEDDAYQSKYLGDFLAGNNIFVLYAYSAAEALSLLGTDRVDGIILDIRLADMNGL 931 Query: 63 EITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96 ++ IKE+ + IPV+ TA + D R+ K Sbjct: 932 DLLDTIKENPQWSAIPVVVNTAEDLSQADLSRVMK 966 >gi|330957938|gb|EGH58198.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 227 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 235 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +V++V+D + R + G + NG EAL+L + ++ +I+MD+ + ++ Sbjct: 1 MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ T I+E +P+I +TA + D+ G + YI+KP + + +K Sbjct: 61 DGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++I+ED + + ++ GY +G E L+ + PD+I++DI L I+G Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI ++I++ S +P+I VTA D G + Y++KP ++ + I+ + Sbjct: 63 IEICRKIRQHS---NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119 Query: 122 EA 123 ++ Sbjct: 120 KS 121 >gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 241 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED D +E GY +G ALE PD++++D+ L ++ Sbjct: 1 MKPKVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ +Q++ + PV+ ++A + + G + Y++KP L F+ +K + Sbjct: 61 GLQVCRQMRAQGQT--TPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254411332|ref|ZP_05025109.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC 7420] gi|196181833|gb|EDX76820.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC 7420] Length = 121 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 70/120 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED+ ++ DL++ SG +G+EALE Q +PDV+++DI + ++G Sbjct: 1 MSTVLVVEDSLAQRQMISDLLKGSGLTVSVASDGVEALEHILQSRPDVVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q +PV+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLLR 120 >gi|170723373|ref|YP_001751061.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169761376|gb|ACA74692.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 241 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 54/121 (44%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++ +D++ +L + + +G+ +G D++I+D+ L + G Sbjct: 6 KSILMADDDQEIRELLQTYLSRAGFQVHAEADGQGFRHALENTHCDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 66 SLCRWVRQHPRQSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + L +D +E G L NG E +E A++ PD+I++DI + +I G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ + P++ ++A + D + G + Y+ KP SL + I ++ Sbjct: 60 YEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] Length = 231 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED E ++L + +G+ +++ + A ++ +++ PD+II+D L + Sbjct: 1 MAASILIVEDEESILELIAINLHQAGFNPIRSLSAEFAEKIIQKNLPDLIILDWMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I+ S ++IP+I +TA + + ++ + G + Y++KP S + IK + Sbjct: 61 GVEFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++ ED+ + GY +G+EAL A + PDV+++D+ + I G Sbjct: 12 TQTVLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGIDG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + ++ + + P++ +TA D G + Y+ KP + ++ + Sbjct: 72 LQVCRVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 129 Query: 122 E 122 Sbjct: 130 R 130 >gi|84496310|ref|ZP_00995164.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84383078|gb|EAP98959.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 238 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D ++ + Y +G AL+ PD++I+D+ L +I G Sbjct: 3 MSRILVVDDEPHLVRTLAINLRARDYEVETAGDGRSALQAVHDQLPDLVILDLGLPDIDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++I+E + PVI ++A A D+ G + Y++KP ++ + I+ + Sbjct: 63 VDVLRRIRE---TSQTPVIVLSARADSIDKVEALDLGADDYVTKPFAVDELLARIRVALR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] Length = 255 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 28 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 87 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 88 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 147 Query: 119 YIGEA 123 + A Sbjct: 148 MLRRA 152 >gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 229 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+I+ED+ + R + G+ G + LEL R +PD +I+D+ L + G Sbjct: 1 MPRVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLPGMPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ ++P+I TA D + G + Y+ KP+ + I+ + Sbjct: 61 LEVCRRIRAH---HQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] Length = 241 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+M+V+D + ++ + + GY + +G EA+++ + +P ++++D+ + ++ G Sbjct: 9 KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVMMPKLDGYS 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ +S ++P+I +TA D + G + YI KP S I+ + Sbjct: 69 VCQQLRRES---DVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRS 125 >gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255] gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase [Nitrobacter winogradskyi Nb-255] Length = 457 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N++L + + L NG +ALE + + D+I++D+ + ++ Sbjct: 1 MSARVLVVDDVPANVRLLEARLSAEYFDVLTASNGAQALETCARAECDIILLDVMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ +TA D R + G + +++KP+S + ++ Sbjct: 61 GFEVCRRLKANPATHFIPVVMITALDNPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ + + EAL A + D++I+ + L+ GL Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAVDVEADPSEALFRAAESNYDLLIVSLGLENFDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFME 114 + Q + + +P++AV A A R + G Y+ +PI + + Sbjct: 216 LCSQARSLERTRHVPILAV-ADADGSPRLLRGLEIGINDYLLRPIDRNELLA 266 >gi|262044459|ref|ZP_06017518.1| OmpR family transcriptional regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010607|ref|ZP_08306835.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] gi|259038189|gb|EEW39401.1| OmpR family transcriptional regulatory protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534457|gb|EGF61050.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] Length = 252 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L D +E SGY A NG + + H+ D+I++DI + GL Sbjct: 12 HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + Q+IPV+ +TA D + G + Y+ KP + IK + Sbjct: 72 LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 129 >gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21] gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+++ED + +L +E GY L +G L AR+ KPD+I++D+ L + G Sbjct: 1 MPTVLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLMLPGMMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K IPVI +TA + D + G + Y+ KP S M ++ + Sbjct: 61 TEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ + R + +GY +G+EAL++ +PD +++D+ + + GLE Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 62 VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1778 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 71/116 (61%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I EDNE N+ + GY + ++G +A++LA+ P++I+MDIQ+ I GLE Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1720 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +I++ + + ++P+IA+TA AM GD E+ + G Y++KP+ L I++ + Sbjct: 1721 INRIRQITTMSQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776 >gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] Length = 224 Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I+ED+ ++ ++ G+ +G E L A+ + D+I++D+ L +++ Sbjct: 1 MKEKILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVMLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I+EDS ++P+I +TA D+ G + YI+KP S + +K + Sbjct: 61 GFEVCKRIREDS---DVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia sp. 1NLS2] gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia sp. 1NLS2] Length = 458 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + G +ALE+ ++ + D++++D+ + +I Sbjct: 1 MSARVLVVDDVPANVKLLEARLSAEYFDVVTANCGTQALEICQRAECDIVLLDVMMPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPV+ VTA D R G + +++KP+S + + ++ Sbjct: 61 GFEVCRRLKSNPRTHFIPVVMVTALDSPSDRVRGLDAGADDFLTKPVSDVVLIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 87.5 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + ++ + N EAL A ++ D++I+ + L+ GL Sbjct: 157 KILLVDDRPSSYERLAPVLAEE-HAVDVEPNPSEALFHAAENNYDLLIVSLNLENYDGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + Q++ + +P++A++ R + G Y+ +P+ + + Sbjct: 216 LCSQVRSLERTRSVPLLALSEADNNTQLLRGLEIGVNDYLLRPVDKNELLA 266 >gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1175 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + + + +E Y+ L NG EAL +A PD+I++D+ + ++ G E Sbjct: 8 TILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALSIAADKIPDLILLDVMMPDMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++K D ++IPV+ +TA K E + G E ++ KP + + + + + Sbjct: 68 VCSRLKADICTRDIPVVFITASGNKEHEVKGLDLGAEDFVHKPFHEGVLLARVGQILRR 126 Score = 105 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 + +IV+DN N ++ R + G + NG AL + Q + ++D+Q+ + Sbjct: 673 RTLIVDDNSTNREILRVRFGSWGMRPGEAANGSAALSMLHQAKAENDPFVLAVLDMQMPD 732 Query: 59 ISGLEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G + + IKED +L++ +I + +A GD R+ + G ++ ++KP+ S +++ Sbjct: 733 MDGETLGRNIKEDGQLKDTRLIMMSSATGQTGDSRRLHETGFDSILNKPVLPSELYASLE 792 Query: 118 KYIGE 122 K + Sbjct: 793 KILAR 797 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDN +N ++ +++ G A NG EAL D+++MD+Q+ E+ GL Sbjct: 825 ARILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENIPYDLVLMDVQMPEMGGL 884 Query: 63 EITKQIKEDSELQEIPV 79 E T++I+ PV Sbjct: 885 EATRRIRSMEHG--TPV 899 Score = 70.9 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 29/47 (61%) Query: 76 EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 IP+IA+TA AM+ D ER + G + Y +KP++ ++K++ + Sbjct: 966 RIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWLSK 1012 >gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] Length = 229 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L +D +E SG+ +G L+ A + D+ I+D+ L + G Sbjct: 1 MSKILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I +Q++ ++ P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FDICRQVR---NVKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 222 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY+ + NG EALEL +H+P +I+ DI + E+ Sbjct: 1 MPLTLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+++ + +PVI +TA + R + GC+ Y+ KP L I+ + Sbjct: 61 GFELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIRALL 120 Query: 121 GEA 123 + Sbjct: 121 ERS 123 >gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200] Length = 1770 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 76/120 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1424 KRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLSQQSYDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T I++ EL IPVIA+TA AM GD+E + G +I+KPI ++I +T+ KY+G+ Sbjct: 1484 QATMAIRQRPELAHIPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNILYQTLLKYLGD 1543 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +E+ G+ R G EA+ QH+ V ++D ++ + GLE Sbjct: 1284 VLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCMQHEYAVALIDWKMPSMDGLEA 1343 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QI++ ++ ++ V+A A +I + G YISKPIS S ++ I +G A Sbjct: 1344 ARQIQQQAKAAP-RILMVSAHANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRA 1401 >gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 244 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+ IV+D + +L + ++ GY N +ALE + +PD++I+DI ++E+ G Sbjct: 11 MKKIYIVDDEQRIRELIQMYLKKEGYDTKIFSNAKDALEEFKNQEPDLMILDIMMREMDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I++ ++P+I V+A + + D + G + Y++KP S M +K + Sbjct: 71 LELCREIRK---TSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTILK 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1295 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E +G + R+G EAL +H D+++MDI + E+ G Sbjct: 1175 RTVLLVDDDMRNIFALSSVLEEAGLEIVVARDGREALAKLAEHPEIDLVLMDIMMPEMDG 1234 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +I+ D ++P+IA+TA AM+GD+++ G Y++KP+ + ++ ++ Sbjct: 1235 YEAMGEIRRDPARAKLPIIALTAKAMRGDKDKCLAAGANDYLAKPVDPERLLSLLRVWL 1293 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+ED+ L +L GY L +G L LA +P II+D+ L ISG Sbjct: 906 KSLLIIEDDSSFASLLLELARDKGYKGLVAEDGETGLHLADYFRPSGIILDMGLPGISGR 965 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME---TIKKY 119 E+ +++K++ E + IPV ++A + +E + G +++KP+S+ + I+K Sbjct: 966 EVMERLKKNPETRHIPVHFISA-SDPSNEV--MQLGAVGFLTKPVSVDKLEQVFGRIEKL 1022 Score = 94.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++VED+ + + R ++ G ++ +G EA L D +I+D+ L ++SG Sbjct: 1028 KRLLVVEDDMVQRQAIRAMVGEGGDIEVVEAADGEEAHRLLGTEHFDCVILDLGLGDMSG 1087 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ +IK+D + ++PV+ T + DEE + ++ I K Sbjct: 1088 FDLLTKIKDDQRISQVPVVIYTGREISPDEEERLQQYADSIIIK 1131 >gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 719 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED+ L R +E GYI +G AL+ + D +I+D+ L + G Sbjct: 1 MKQILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPWDAVILDLMLPNVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ + +PVI ++A + + D + G + Y++KP S+ + IK Sbjct: 61 LEICRRIRQI--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] Length = 238 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + + Sbjct: 66 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRS 122 >gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D+E ++ +++SGY NG EA E ++ PD++++D+ + I G++ Sbjct: 7 KVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPYIDGID 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K I++ +E PVI +TA D+ + G + YI KP + +K + Sbjct: 67 ILKWIRKQ---KETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRR 122 >gi|67924013|ref|ZP_00517465.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] gi|67854153|gb|EAM49460.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Crocosphaera watsonii WH 8501] Length = 377 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY + NG AL Q PD+I++DI + ++G E+ Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTICQVPPDLILLDINMPSMNGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED + ++IPVI ++A D+ + G YISKP + I+ + Sbjct: 68 CQQLKEDVKTKDIPVIFISALDDVLDKVKAFDVGGVDYISKPFQTEEVIARIENQL 123 >gi|186685999|ref|YP_001869195.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102] gi|186468451|gb|ACC84252.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102] Length = 121 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED+ ++ DL++ +G +G+EALE + PD++++DI + ++G Sbjct: 1 MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQVAPPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q +PV+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120 >gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 223 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I+ED + + ++ + + +G LELA + D I++D+ L +++ Sbjct: 1 MKKKILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ +P++ +TA D G + Y+ KP ++ + I+ + Sbjct: 61 GIEVCRRIRK---TSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 228 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IVED+ +L RD +E +G+ +G+ + A K D++++DI L + G Sbjct: 1 MEKILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+E + IP++ V+A D+ R G + YI KP S + +K ++ Sbjct: 61 FQVCRRIREK---RNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQ 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 235 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ + +G ALE + D++++D+ L +SG Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ KQ++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 227 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++E+ Y +G +AL R+ P ++++D+ L + Sbjct: 1 MTTRILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATFREVNPHLVLLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI + I+ +S ++PVI +TA D + G + Y++KP + ++ + Sbjct: 61 GVEICRLIRAES---DVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218890978|ref|YP_002439844.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218771203|emb|CAW26968.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 786 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 63/116 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ +H D+++MD + + G E Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEEHPIDLVLMDCNMPVMDGYE 723 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 724 AARQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779 >gi|170744710|ref|YP_001773365.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|168198984|gb|ACA20931.1| response regulator receiver protein [Methylobacterium sp. 4-46] Length = 126 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 85/122 (69%), Positives = 107/122 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY L+T NG+EA+ELAR+H+PD+I+MDIQL E+S Sbjct: 1 MTKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARRHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED EL+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++ Y+ Sbjct: 61 GLEVTKWIKEDDELKSIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRTYL 120 Query: 121 GE 122 G+ Sbjct: 121 GD 122 >gi|156740320|ref|YP_001430449.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] gi|156231648|gb|ABU56431.1| response regulator receiver modulated metal dependent phosphohydrolase [Roseiflexus castenholzii DSM 13941] Length = 331 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++ +DN + +E GY+AL RNG EAL LA PD++++D+ + + Sbjct: 1 MAAKILVADDNPAMREAIVRFVEAEGYVALAARNGREALNLALAELPDLVLLDVTMPDYD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IPV +T R + G + +++KP + I+ + Sbjct: 61 GYEVCRRLKADPRTALIPVTMLTVLDAPEHRWRGIEAGADDFLTKPFDERLLRARIQSQL 120 Query: 121 G 121 Sbjct: 121 R 121 >gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 241 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 7/127 (5%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQL 56 + ++++V+D L++ GY +G AL +Q D++I+D L Sbjct: 1 MSQILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++SG+E+ ++++ S+L PV+ +TA D + G + Y+ KP L + + Sbjct: 61 PKLSGIEVCQELRSQSQL--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARV 118 Query: 117 KKYIGEA 123 + + + Sbjct: 119 RALLRRS 125 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+K K++I+ED + + + E GY T +G+ L+ A + D++++DI L I Sbjct: 1 MMKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K+I+E S +IPVI +TA D+ G + Y++KP S+ ++ Sbjct: 61 DGFEVLKKIREHS---DIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAA 117 Query: 120 IGE 122 + + Sbjct: 118 LRK 120 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ + R + +GY +G+EAL++ +PD +++D+ + + GLE Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 62 VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|284037394|ref|YP_003387324.1| Fis family transcriptional regulator [Spirosoma linguale DSM 74] gi|283816687|gb|ADB38525.1| two component, sigma54 specific, transcriptional regulator, Fis family [Spirosoma linguale DSM 74] Length = 488 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D N+ + + + SGY L R+G A+E A PD+I++DI + + G E Sbjct: 12 TILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFALPDLILLDIMMPGMDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K++ Q IPV+ +TA + D+ G YI+KP L + I ++ Sbjct: 72 TCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHL 128 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D L + +G+ + +G EALE + +PD++++D+ L ++ G Sbjct: 12 ARLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++E PV+ +TA D G + Y++KP SL + I+ + Sbjct: 72 TVTRRLRERGV--RTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRR 129 Query: 123 A 123 + Sbjct: 130 S 130 >gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 227 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++V+D +L +K + G+ +G EA+ + DV+I+D+ L E + Sbjct: 1 MKIKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 GLEVCQIVRE---FSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|197117616|ref|YP_002138043.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] gi|197086976|gb|ACH38247.1| response receiver-modulated diguanylate cyclase [Geobacter bemidjiensis Bem] Length = 349 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D N+++ +++ + Y L +NG +A+ + +Q PD+I++DI + + G Sbjct: 10 QKILIVDDTPANIEILYSILKGA-YDVLFAKNGGDAIRIVQQQLPDLILLDIMMPGMDGY 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + +K D +IP+I VTA + + DE + G Y++KPIS I + ++ ++ Sbjct: 69 QVCRVLKADPLTAKIPIIFVTAMSKEEDEAMGLQSGAIDYLTKPISPPIVLARVRNHL 126 >gi|300866841|ref|ZP_07111518.1| putative Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] gi|300335151|emb|CBN56678.1| putative Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] Length = 320 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N++L ++E+ GYI ++ NG AL+ A + PD+II+DI + +++G E+ Sbjct: 13 ILIVDDNPDNLRLLSKILESQGYIVRKSLNGKMALQAAYRDPPDLIILDINMPDMNGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KE Q++P+I ++A D+ R + G YI+KP + ++ + Sbjct: 73 CQQLKESEATQDLPIIFISALDRVNDKVRAFEMGAVDYITKPFQEQEVLMRVRNQL 128 >gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] Length = 230 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+DNE + + +GY + G E L +KPDVI++D+ L +I G Sbjct: 1 MKTILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I++ + +P++ +TA D G + YI KP S M I+ + Sbjct: 61 FEVCQCIRK---VSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220904004|ref|YP_002479316.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868303|gb|ACL48638.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 259 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE + +E GY RNG LE+A D I++D+ L + G+ + Sbjct: 6 LLVEDNEDILANLYAYLEPLGYTLDCARNGKAGLEMALGRGFDCIVLDVMLPGMDGISLC 65 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++++ + PVI +TA D + G + Y+ KP +L I+ + Sbjct: 66 RRLRQEYRVS-TPVIMLTARDAVADRVAGLEAGADDYLVKPFALKELEARIRALLRR 121 >gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + +D E GY + NG EA+E + D+I++DI + I Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED L R +E GY L +G+ L+LAR +PD++I+D+ L ++ G Sbjct: 1 MSTILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ ++ IP++ +TA + D + G + Y+ KP SL + ++ + Sbjct: 61 FSVCRILRRET---NIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5] Length = 245 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++IV+DN ++ R L++ GY + RNGMEALE+ Q D+II+DI + ++G Sbjct: 3 TARIIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIMMPGMNG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I++ S P++ ++A + D+ G + Y+ KP S + + K I Sbjct: 63 YQTCLEIRKQS---NAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 250 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ ED+E +L R +E G +G A++ AR +PD+I++D+ + ++ Sbjct: 1 MSARILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + ++ DS+ +P++ +TA A + D G + Y++KP S ++ + Sbjct: 61 GLDVCRILRTDSQ---VPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] Length = 234 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++V+D + + R E GY + +GMEA+E+ R+ D+II+D+ + E+ G Sbjct: 11 MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ +EIPVI ++A + D+ + G + Y+ KP S M +K I Sbjct: 71 FSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVIS 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +E +G I+ RNG EA+ R+ K D+II+DI + ++ Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ +QI++ +P++ ++A + D+ + G + Y++KP S + +K + Sbjct: 61 GLDVCRQIRK---TSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++I++D + L +++ GY Q R+G L +PD+II+DI L +I+G Sbjct: 3 TKKILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPDING 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K ++ +S IP++ +TA + D+ + G + Y++KP + +K + Sbjct: 63 NEVCKMVRSNS---SIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1] gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1] Length = 1224 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 ++V++V+D+ N+ ++E SG+ NG EAL++ + D+++MDI + E+ G Sbjct: 1103 QRVLLVDDDIRNLYSLSAVLEDSGWEVRTAANGREALDILSSEGAFDLVLMDIMMPEMDG 1162 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + +++P+IA+TA AM+ D + G Y+SKP+ S +K ++ Sbjct: 1163 FEAMRRIRGQAAFEKMPIIALTAKAMRDDRAQCVAAGANDYLSKPVDPSKLKAIVKMWL 1221 Score = 64.8 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ + +DL G+ A + A + P I++D+ L + G E+ Sbjct: 832 LIIEDHPEFSTVLKDLATEFGFEAACVHSAAAAHRYLERWTPASIVLDLGLPDSPGEELL 891 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +K +IPV ++ + G +I+KP ME + Sbjct: 892 SWLKAQPHTAQIPVHVISGK---ENVVMDELAGASEFIAKPFGRDR-MERL 938 Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQLQE 58 V+I+ED+E+ L + +EA E +++D+ L + Sbjct: 954 VLIIEDDEVQRDLIEVSFREQEIACDLASSAVEAREYLAAMEQTPARHYGAMVVDLDLPD 1013 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFA 86 G ++ ++ + + IP+I TA Sbjct: 1014 CDGFQLVDELHQSTNGS-IPIIVYTARD 1040 >gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob [Alicycliphilus denitrificans BC] gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus denitrificans K601] gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB [Alicycliphilus denitrificans BC] gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family [Alicycliphilus denitrificans K601] Length = 233 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 3/124 (2%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K V++VED +L + +G+ + + A PDVI++D L Sbjct: 1 MKPFPHVLVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SGL++ ++ + + + +P++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 MSGLQLARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 242 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ + +G + E A+ PD+II D+ + +G + Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIIIAVDGEDGWEKAQTIFPDLIISDVMMPRANGYD 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ED +L PVI +TA M D G + YISKP +K I Sbjct: 76 LLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 >gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54] Length = 744 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +DN + R L+ + Y +G AL ARQ PD++I DI + + GL Sbjct: 225 RILCADDNADLREYLRSLL-AADYDVRIAADGATALRSARQDPPDLVITDIMMPGMDGLT 283 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ D+ + +PVI ++A A + G + Y+ KP S + + ++ A Sbjct: 284 LLQALRGDARTRTVPVILLSARAGQEARVEGLDAGADDYLVKPFSPAELQARVGAHLRLA 343 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 57/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN + +++ G R+G +AL + + P V+++DI + + G E Sbjct: 604 RILVVDDNTDSADTTAMVLQAFGAQVGVARDGRQALAMLDEFAPAVMLVDIGMPGMDGHE 663 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ Q + +IA+T + D + G + ++ KP+ + + + Sbjct: 664 VARRVRSAPSGQGVVLIAMTGWGQDEDRRHSHEAGFDHHLVKPVDFAALEQLLVSLARR 722 >gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 255 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + ++L + +G + R+G EAL + +P VII+D+ L + G + Sbjct: 33 VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVMLPDTDGFTL 92 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++E + P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 93 CRHLRERGV--QTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR 148 >gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1] gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94] gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94] gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94] gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 228 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ISG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 ISGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 235 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K KV+++ED + + +E G+ +G + L A+ PD++I+D+ L I Sbjct: 1 MAKPKVLLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLMLPVI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +Q++ D +L ++ +TA A + DE G + Y++KP + + IK Sbjct: 61 DGLEVCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKAL 120 Query: 120 IGEA 123 + + Sbjct: 121 LRRS 124 >gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 68/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + ++L R + SG+ + NG++A+E+ PD+I++D+ L +I GLE Sbjct: 5 KLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ D + + P+I +TA + + D+ G + YI+KP L ++ + Sbjct: 65 VCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + R + +GY +G++AL + +PD +++D+ + ++ Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 61 GLEVCRRLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2] gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2] gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7] Length = 236 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +D + L + +E Y NG EAL L +++ +++I+D+ + ++ G+E Sbjct: 5 RILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKVDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D+ G + YI+KP S++ + +K + Sbjct: 65 VCRRLRNKT---NIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRR 120 >gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 226 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E + L + +GY ++ R+G EA++ R+H D++++D+ + E+ G Sbjct: 1 MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+ +P++ VTA D + K G + Y++KP + + I+ + Sbjct: 61 WETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 253 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQL 56 ++++VED EL ++ +E GY + +G A+E + P D++I+D+ L Sbjct: 23 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ +P++ ++A + D + G + Y++KP S+ + Sbjct: 83 PQINGLDICRLLRHQGN--PVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 140 Query: 117 KKYIGE 122 + + Sbjct: 141 RALLRR 146 >gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D +L +K + +E +G EA+E + + D++++DI + +G Sbjct: 1 MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMIPVYTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 IEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|268316158|ref|YP_003289877.1| response regulator receiver modulated serine phosphatase [Rhodothermus marinus DSM 4252] gi|262333692|gb|ACY47489.1| response regulator receiver modulated serine phosphatase [Rhodothermus marinus DSM 4252] Length = 371 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 + + +++VED +L + Y NG EAL+L + PD+II DI + ++ Sbjct: 1 MARYSILVVEDEHTLRRLLEYRLSKY-YRVRSAANGEEALQLVLEEIPDLIISDIMMPKM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + + ++ E + IP I +TA A + R + G + YI+KP + + I++ Sbjct: 60 DGFALQQALQNRKETRAIPFIFLTAKADEHSRMRGMRMGVDDYITKPFDIDQLLARIERL 119 Query: 120 IGE 122 + Sbjct: 120 LER 122 >gi|262195489|ref|YP_003266698.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262078836|gb|ACY14805.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 406 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ N++L + +G + +E AR+ P ++++DI L I GL Sbjct: 21 QRVLVVDDDPANLRLVEAYLADLDVEVSTALSGEQGVEQAREEPPHLVLLDIMLPGIDGL 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+ +++PVI +TA + + G Y++KP+ + ++ ++ Sbjct: 81 EACRRIRAAPRTRDVPVIFMTALSDHARKLEGFGVGGVDYVTKPLDRPELLARVRTHLR 139 >gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri DSM 18205] gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri DSM 18205] Length = 231 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D + ++ + +ET GY + EALE+ D++++D+ + +SG Sbjct: 5 MKRILVVDDEQDLCEILKFNLETEGYEVETANSAEEALEM-DIASFDLLLLDVMMGGMSG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ+K + +P+I +TA + D G + YISKP S+ M ++ + Sbjct: 64 FQLAKQLKGNPMTANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVLR 123 Query: 122 E 122 Sbjct: 124 R 124 >gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 227 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY + +G EAL + + PD+I+ DI + ++ Sbjct: 1 MPLTILVVDDDLGTRLSISDYLELSGYSVVTANDGQEALAMVDNYHPDLIVTDIIMPRMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ + +PVI +TA + + GC+ Y+ KP L I+ + Sbjct: 61 GYELVRRVRQQPAFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120 Query: 121 GEA 123 + Sbjct: 121 ERS 123 >gi|28871510|ref|NP_794129.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. tomato str. DC3000] gi|66047297|ref|YP_237138.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|213970324|ref|ZP_03398454.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|257486388|ref|ZP_05640429.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625007|ref|ZP_06457961.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647066|ref|ZP_06478409.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. 2250] gi|289677749|ref|ZP_06498639.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] gi|298488561|ref|ZP_07006591.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301385476|ref|ZP_07233894.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato Max13] gi|302062994|ref|ZP_07254535.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato K40] gi|302135278|ref|ZP_07261268.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302189741|ref|ZP_07266414.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|28854761|gb|AAO57824.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. tomato str. DC3000] gi|63258004|gb|AAY39100.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|213924996|gb|EEB58561.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|298156902|gb|EFH97992.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322421|gb|EFW78514.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. glycinea str. B076] gi|320330111|gb|EFW86098.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330868739|gb|EGH03448.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877907|gb|EGH12056.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330888541|gb|EGH21202.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. mori str. 301020] gi|330895192|gb|EGH27530.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943745|gb|EGH46029.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330950189|gb|EGH50449.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] gi|330966157|gb|EGH66417.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|330973353|gb|EGH73419.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] gi|330989414|gb|EGH87517.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009877|gb|EGH89933.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331017964|gb|EGH98020.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 227 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 253 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + GY R+G E + + D+I++D+ L GL Sbjct: 6 HLLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PVI +TA + D + G + Y++KP S + IK + Sbjct: 66 LCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRR 124 >gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 265 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ L +E +G+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 65 CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRR 122 >gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 239 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 13 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 73 GVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V+I+ED + +L +E GY + +G E LE + +PD+I++D+ L + G Sbjct: 1 MQTVLIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVERVQPDLILLDLMLPGMFG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K +K+ + IPV+ +TA + D+ + G + Y+ KP S M +K + Sbjct: 61 TDVCKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX] gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX] Length = 232 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+I +D+ + ++ GY +G+E L D++I+D+ + + GL Sbjct: 5 RTVLIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPVDLLILDVMMPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + + P++ +TA D G + Y+ KP L + I+ + Sbjct: 65 GVCRVLRAEGD--RTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRR 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|295690169|ref|YP_003593862.1| response regulator receiver modulated diguanylate cyclase [Caulobacter segnis ATCC 21756] gi|295432072|gb|ADG11244.1| response regulator receiver modulated diguanylate cyclase [Caulobacter segnis ATCC 21756] Length = 454 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y +G A+ +A++ PD+I++D+ + I Sbjct: 1 MSARILVVDDIEANVRLLEAKLAAEYYEVSTAMDGQTAINMAQRDPPDIILLDVMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++KED + IPV+ +TA + D + + G +++KPI + ++ Sbjct: 61 GFTVCRKLKEDPATRHIPVVMITALDGRADRIQGLEAGASDFLTKPIDDVMLFARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 77.5 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+DNE + + + + + + A ++ D++I++ + GL Sbjct: 155 RVLVVDDNERQAERLAGEL-AADHRPVVETDPETA-RVSASGPVDLVIVNAAAKGFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T ++ D + +PV+A+ + + + G +++P+ K I Sbjct: 213 FTAALRSDERTRHLPVLALVDPDDRARMVKALEIGVNDILTRPVDPQELSARAKTQIQR 271 >gi|307153375|ref|YP_003888759.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7822] gi|306983603|gb|ADN15484.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7822] Length = 381 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ KL + S Y + NG E LE A Q+ P +II D + + G Sbjct: 1 MAQILIIDDDLAIQKLLSKSLMRSQYQVIVASNGNEGLEKALQYCPALIICDWLMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +QIK +L I +TA D G + ++ KPI ++ ++ + Sbjct: 61 LEVCRQIKATPKLSTTFFILLTAQGSLNDRIMGLDAGADDFLCKPIEINELQARVRAGLR 120 >gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] Length = 226 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K++IV+D KL +D + GY+ + +GMEALE+ + +II+D+ + + G Sbjct: 5 KILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEKDIALIILDVMMPRMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S+ +P+I +TA + + DE + + G + YISKP S I + ++ + Sbjct: 65 QTCREIRQSSQ---VPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|268317057|ref|YP_003290776.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] gi|262334591|gb|ACY48388.1| response regulator receiver protein [Rhodothermus marinus DSM 4252] Length = 132 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 66/120 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R L+E GY +G ALE R PD++++D+ L +SG E Sbjct: 7 RILIVEDEPSIALSLRFLMEQEGYQVHVVEDGEAALEACRNVPPDLVLLDVMLPGMSGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q+K + Q I V+ VTA + D E+ R G +AYI KP ++ MET++ + + Sbjct: 67 VCRQLKAGPDGQAIKVVLVTARGRETDLEKGRAVGADAYIVKPFAIREVMETVRTLLNRS 126 >gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC 43184] gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC 43184] Length = 225 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ +G EL +Q ++I+DI + +++G Sbjct: 1 MAKILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQEDFQLLILDIIMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ KQ ++ Q PVI +TA D G + Y+ KP S IK + Sbjct: 61 LQLCKQYRQTYGYQS-PVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] Length = 232 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ YI + NG+EALE ++ + D+ I+D+ L +I Sbjct: 1 MNEKILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKTEIDLAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E+ PVI +TA GD+ G + YI+KP + + +K + Sbjct: 61 GFRICQKIRENYYF---PVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 235 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E + GY + G EALE +H D++++D+ L + G Sbjct: 1 MTRILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ DS ++PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRRLRLDS---DVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 225 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IV+D+ +L +E G+ + +G++AL+ K D++I+DI + + Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 58/122 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+ IVED L + GY G + Q KPD+I++D+ L + Sbjct: 1 MPKKIAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVMLPDAD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+ S L PV+ +TA + + D + G + Y++KP S + +K ++ Sbjct: 61 GFELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 238 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ +G AL+L Q+ ++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|298531125|ref|ZP_07018526.1| response regulator receiver modulated serine phosphatase [Desulfonatronospira thiodismutans ASO3-1] gi|298509148|gb|EFI33053.1| response regulator receiver modulated serine phosphatase [Desulfonatronospira thiodismutans ASO3-1] Length = 381 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-ARQHKPDVIIMDIQL 56 M++K +++V+D+ LN+++ +++ Y +G +AL++ PD+I++DI + Sbjct: 4 MMQKKYKILVVDDSPLNIRILSSILKDD-YRVQTALHGDKALQIIFGDDPPDLILLDIMM 62 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 I G E+ ++IK D IPVI VT + DE G YI+KP I + Sbjct: 63 PGIDGYEVCRRIKADPGTAGIPVIFVTGRSDVEDEAYGLSLGAVDYITKPFHFPIIKARV 122 Query: 117 KKYI 120 K ++ Sbjct: 123 KNHL 126 >gi|194334444|ref|YP_002016304.1| histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312262|gb|ACF46657.1| histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 676 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 74/120 (61%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N K+ + +IE GY NG EA+E +Q + +++MD+Q+ + G E Sbjct: 547 RILLVEDNVINQKVAQAMIEKIGYEIDIAVNGEEAVEALQQKQYGLVLMDLQMPVMDGFE 606 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ L +PV+A+TA A + D E + G + Y+SKP+ + ++ +++++ Sbjct: 607 ATRRIRKFGGLASNARVPVVAMTANATREDRELCLRAGMDDYLSKPVERQVLLDMLQRWL 666 >gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 256 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D + GY +G EAL + +PD++++DI + + GL Sbjct: 17 ARVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPRMDGL 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ + +PV+ +TA GD G + Y++KP L + ++ + Sbjct: 77 TAVRRMRSRGDT--VPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALL 132 >gi|237736000|ref|ZP_04566481.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421908|gb|EEO36955.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 243 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 70/122 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++++D E ++L + +E SGY G + LE+ + PD+I++D+ L EI Sbjct: 1 MKKKILVIDDEEHILELLKINLEFSGYDTYAYDTGKDVLEIIEKTNPDLILLDLMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI K+I+ + + +I ++ ++A + + D+ + G + YI+KP SL + IK Sbjct: 61 GIEICKRIRRNPKFNKIKLLILSAKSDEIDKILCLEIGADDYITKPFSLRELLARIKAIF 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 229 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803] gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621] gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621] Length = 225 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes] Length = 226 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E +++ + + Y + +G ALE ++ PD++++D+ L + GL Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E + +P+I +TA + + D K G + Y+ KP S + I+ + Sbjct: 62 VCRKIRE---ISNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRR 117 >gi|83814442|ref|YP_446396.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294508333|ref|YP_003572391.1| response regulator DrrA [Salinibacter ruber M8] gi|83755836|gb|ABC43949.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294344661|emb|CBH25439.1| response regulator DrrA [Salinibacter ruber M8] Length = 236 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 76/120 (63%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D E + L +E G+ L R+G+EALE AR+H PD+II+DI + ++ G+E Sbjct: 12 TILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++D+ L+ IP++ +TA + D+ + G + Y+ KP+S+S+ + K + A Sbjct: 72 VCQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSA 131 >gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V+IV+D + + + +LQ + EA + PD+I++D L S Sbjct: 1 MQKRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T++ ++ S +EIP+I +TA + + D + G + Y+ KP S + I+ + Sbjct: 61 GLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVM 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|320103510|ref|YP_004179101.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319750792|gb|ADV62552.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1215 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN ++ + +G+ +G E L A D+I+MD+Q+ + G+E Sbjct: 865 ILVVEDNPDLRRVLTAFLTAAGWRVETASDGEEGLAKATTTSFDLILMDLQMPRLDGVEA 924 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++++ + P++A+TA + G+ +R + G + Y++KP+ ++ + +++G Sbjct: 925 TRRLRARGVV--TPIVALTANDLDGERQRCLEQGFDDYLTKPVGQGELIQRLAQHLG 979 >gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4] gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4] Length = 232 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60 K ++IV+D L ++ G+ + G EA+ R + D+II+DI + ++ Sbjct: 5 KTILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDLD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++E IP++ ++A D G + Y++KP + +K + Sbjct: 65 GFEVCKIVRE---YSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALL 121 Query: 121 GE 122 Sbjct: 122 RR 123 >gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1511 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 67/117 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDNE+N ++ R+L+ +GY NG ALE+ ++ D++ MD+Q+ + GL Sbjct: 1172 RLLVVEDNEVNQQVARELLTQAGYTVDVAENGEVALEMVQRTPYDLVFMDMQMPVMDGLA 1231 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I++ +P++A+TA AM+ D E+ G +++KPI + +I Sbjct: 1232 ATIAIRKLPGFAALPIVAMTANAMRQDREKCLAAGMNDFVAKPIDPQALFAVLTAWI 1288 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57 ++V++V+DNE + D++ + +G EAL + + +V+++D Q+ Sbjct: 1025 RRVLVVDDNESARTVLTDMLAAMSFSVEAAASGQEALSVLEAARGKNQPFEVVLLDWQMP 1084 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + GLE ++I+ + ++ VTAF + GG EA + KP++ S+ +T+ Sbjct: 1085 GMDGLETAERIRAKFDAPPPHLVMVTAFGREEVLRGAEDGGFEAVLLKPVTPSLLFDTLM 1144 Query: 118 KYIG 121 + +G Sbjct: 1145 RALG 1148 >gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] Length = 244 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L R + G+ +G + + D+I++D+ + GL Sbjct: 11 KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLMMPGEDGLS 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + I + Sbjct: 71 ICRRLRAAND--RTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRR 127 >gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] Length = 236 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K++++VED + ++ + GY ++ + EA + + PD++++D L Sbjct: 10 MSGKRILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQVPDLMLVDWMLPGT 69 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E + K D Q++PVI +TA + D+ G + Y+SKP S + I+ Sbjct: 70 SGVEFVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAV 129 Query: 120 IGE 122 + Sbjct: 130 LRR 132 >gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 224 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ + + ++ GY +G L++A+++ P+++I+DI + + Sbjct: 1 MGARILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++ + ++ IP++ ++A + G + Y+ KP +L + ++ + Sbjct: 61 GWEICRRFRRENF---IPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 229 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+I+ED++ +L RD +E +G+ G+ + A D+I++DI L G Sbjct: 1 MKKVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIMLPGEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+ + ++IP++ V+A D+ R G + YI KP S + + +K +I Sbjct: 61 FQVCREIRAE---KDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|237711528|ref|ZP_04542009.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454223|gb|EEO59944.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1379 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ + L + Y + NG E + +AR+ PD++I D+ + ++G E Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KED + IP+I +TA + + + G + YI KP + I +K+ I Sbjct: 1178 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234 >gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603] gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EALEL Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M +K +++V+D +++ +E+ Y Q NG +A E+ + +II+D+ L +I Sbjct: 1 MKQKNILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKENISLIILDLMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G EI K+I++ +P+I +TA + + + G + YI+KP L + +K Sbjct: 61 TGEEICKKIRK---TSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 226 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E +++ + + Y + +G ALE ++ PD++++D+ L + GL Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E + +P+I +TA + + D K G + Y+ KP S + I+ + Sbjct: 62 VCRKIRE---ISNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117 >gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EALEL Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 228 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + +D E GY + NG EA+E + D+I++DI + I Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42] gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY] gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 243 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L R + G+ + +G + + D+I++D+ + GL Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + I + Sbjct: 70 ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 >gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1831 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++VEDN++N ++ +L+ +G NG EA+++A + D I+MDIQ+ + G Sbjct: 1404 AHVLLVEDNDINQEIATELLNMAGIEVSTACNGQEAVDMAIANSYDAILMDIQMPIMDGY 1463 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+ + + Q IP+IA+TA AM GD E+ + G +I KPI+ +T+ K+I Sbjct: 1464 EATRNIRLNPDKQLIPIIAMTANAMSGDREKCIEAGMNEHIPKPINPQEVYQTLAKWI 1521 Score = 86.7 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEIS 60 +IV+D+ ++ L ++ G+ +G EA+E + + +++ D ++ ++ Sbjct: 1258 LIVDDSVAAREILFTLSKSLGFRPDLAASGSEAIEKVKLAHSQGNPYKLLLADWKMPQMD 1317 Query: 61 GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + I+ D L P ++ VTA+ ++ ++ I+KP+S S ++T+ Sbjct: 1318 GLALCGAIQGDLSLVNQPKLVIVTAYDRDEMLKQAGTAELDSAITKPVSASTLLDTVMAV 1377 Query: 120 IGE 122 +G+ Sbjct: 1378 MGK 1380 >gi|160883013|ref|ZP_02064016.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483] gi|156111485|gb|EDO13230.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483] Length = 1347 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + T+ Y L +G LE A++ PD+II DI + + G+E+ Sbjct: 1093 ILVVEDNDDIREYIATSFSTN-YRILTAADGKGGLEQAQEFIPDIIISDIMMPVMDGIEL 1151 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 KQIKED IPVI +TA D+E + G ++Y++KP S + + + Sbjct: 1152 CKQIKEDVCTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLL 1207 >gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++++ED E + R +E +GY +G+E + + PD++++D+ L +++ Sbjct: 1 MPKKILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKFHEKNPDLVLLDLMLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++++S P+I +TA + + + YI+KP S+ + M+ I+ + Sbjct: 61 GFTVCEILRKESRT---PIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] Length = 226 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++ G+ +G++A+E R +PD++++D+ L S Sbjct: 1 MTPKILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++I+ +S +P++ +TA D + G + YI KP + I+ + Sbjct: 61 GIDVCREIRAESR---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 241 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+++ED +L + GY +G E L+ A Q D+II+DI L ++ Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +++++ P+I +TA + + + K G + YI+KP ++ + + + Sbjct: 61 GFEILTKLRQNGI--RTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ ++G+EALEL +Q K D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIQQKKFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 227 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +M+VED +L RD +E +G+ +G +A +Q KP ++I+D+ + + G Sbjct: 1 MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + YI KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 228 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED ++ + Y ++ + A+ + KP++I++D + S Sbjct: 1 MNNKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRS 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K+ E ++IP+I +TA + + D G + YI+KP S + + I+ Sbjct: 59 GIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVW 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D++ ++L ++ +GY + NG EALE+ ++ + D++I+DI + ++ G Sbjct: 1 MNSILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIMMPDLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+E S P+I ++A D+ G + Y++KP + + +K + Sbjct: 61 KEVLRKIREKS---STPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3] gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++VED ++ D G+ ++ +G ALEL +H+ D+I++DI L EI Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++S +P+I +TA + + D + G + Y++KP S + + K + Sbjct: 61 GWSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] Length = 221 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ D+II+D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] Length = 228 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + K+ +VED E L R +E GY G EA R++ PD++I+D L Sbjct: 1 MSQAPKIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + + Sbjct: 121 MLRRS 125 >gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 276 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED E + R +E G+ +G++ L+LAR D +++D+ L + G E Sbjct: 2 HVLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVMLPGLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 I ++++ + +P++ +TA D R G + Y+ KP +L ++ Sbjct: 62 ICRRLRAEGN--PVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRAL 115 >gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159] gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159] Length = 225 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D+ +++ R + G+ ++G EAL L + +PD+I++D L + G Sbjct: 1 MTHVLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ + P++ +TA D G + Y+ KP + + + I+ + Sbjct: 61 LAVVQRLRAAGDG--TPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 245 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED +L + +GY + EA E R PD++I+D L SG Sbjct: 1 MGRILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWMLPGESG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ + D+ +E+ +I +TA + + D + G + Y+SKP S + + I+ + Sbjct: 61 VSLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli CNPAF512] Length = 234 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +E +G R+G EA+ R+ D+II+DI + ++ Sbjct: 1 MAPRILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI++ +P++ ++A + D + G + Y++KP S + +K + Sbjct: 61 GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|298384579|ref|ZP_06994139.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298262858|gb|EFI05722.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1350 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L ++ Y L ++G+EAL + + ++ D+II D+ + E+ GLE Sbjct: 1103 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1161 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + E IP+I +TA D G + YISKP L I I +I Sbjct: 1162 FCRTLKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFI 1218 >gi|237726015|ref|ZP_04556496.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435823|gb|EEO45900.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1379 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ + L + Y + NG E + +AR+ PD++I D+ + ++G E Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KED + IP+I +TA + + + G + YI KP + I +K+ I Sbjct: 1178 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234 >gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1116 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 ++IV+D N+++ + + Y Q + +EALEL R KPD+I++DI + +++G Sbjct: 711 HILIVDDEPTNLQVIVNHLSLQNYAITQASSALEALELIRLGFKPDLILLDIMMPQMTGY 770 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+++E E+P++ +TA D G Y++KP+ + + IK ++ Sbjct: 771 ELCKKLREQFLPNELPIVLLTAKNQISDLVEGFAVGANDYLTKPVLKNELLARIKTHLRL 830 Query: 123 A 123 A Sbjct: 831 A 831 >gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+ +V+D +++ + +E G+ + NG L ++ KPD++I+D+ L IS Sbjct: 1 MDKKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I++ +P++ +TA + D+ G + Y++KP S + +K + Sbjct: 61 GEELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 220 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED + + + + T+GY + +G EA+ + + D++++DI L + G Sbjct: 1 MKKILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I ++IKE +PVI +TA + DE + G + YI+KP S +F+ +K + Sbjct: 61 WSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTIL 116 >gi|225181287|ref|ZP_03734732.1| response regulator receiver modulated diguanylate cyclase [Dethiobacter alkaliphilus AHT 1] gi|225168067|gb|EEG76873.1| response regulator receiver modulated diguanylate cyclase [Dethiobacter alkaliphilus AHT 1] Length = 305 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 62/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+ +++D+ +K+ DL+ G+ +AL+ PD+I++D+ + +++G Sbjct: 1 MPKITVIDDSITIVKMLTDLLTQDGHQVCGMTEAADALDKVVGFSPDLIVLDVIMPDVNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + ++ D+ +P++ +T+ D+ + G + YI KP + I+ ++ Sbjct: 61 YDLCRMLRNDTRTSHLPIMMLTSRGEVTDKVAGLEAGADDYIVKPFEPQEVLARIRTHLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ +L ++ G+ L+ +G+EAL + K D++IMD+ + + G E+ Sbjct: 4 ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPNMDGWEL 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ + ++P + +TA + + + G + Y+ KP + +K + Sbjct: 64 CAEIR---DHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKR 118 >gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I+ED+ +L +E G+ +G E L +PD++I+DI L E++GL+ Sbjct: 2 HVLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIMLPEVNGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + +++D L +P++ +T D R G + Y+ KP + +K + + Sbjct: 62 ICRDVRQDDRL--VPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRS 119 >gi|34557362|ref|NP_907177.1| two-component hybrid protein [Wolinella succinogenes DSM 1740] gi|34483078|emb|CAE10077.1| TWO-COMPONENT HYBRID PROTEIN [Wolinella succinogenes] Length = 401 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 73/116 (62%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D N++L +++ +GY+ ++G++ L+ AR+H+PD+I++DI++ E+ G E+ Sbjct: 12 ILIIDDTPENLRLLGSVLKEAGYLITMAKSGIQGLQAARKHQPDLILLDIRMPEMDGFEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++E+ L EIPV+ +TA + + R G Y+ KP S S + ++ ++ Sbjct: 72 LTRLREEENLGEIPVVFLTAHSDEESILRGLSLGAVDYVKKPFSPSELLLRVRNHL 127 >gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 233 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 59/121 (48%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED +L + +GY +A PD++I+D L SG Sbjct: 1 MSRVLVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWMLPGQSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + K+ + +S +E+PVI +TA A +GD+ G + Y++KP S M I+ + Sbjct: 61 LALAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|302187407|ref|ZP_07264080.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae 642] Length = 645 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634 >gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 231 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+I ED + + + +E GY + +G +AL+ A + ++II+DI L + Sbjct: 1 MKNRVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI K+++E S +P+I VTA + D+ + G + YI+KP S+ + +K + Sbjct: 61 GFEICKRVREKS---SVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANV 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 250 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D ++ R + G+ G AL A Q P+V+++D+ L ++ G Sbjct: 1 MTKILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ +IPVI ++A ++ G + Y++KP + + ++ + Sbjct: 61 FEVLAGLR---GWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|265752955|ref|ZP_06088524.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236141|gb|EEZ21636.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1379 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ + L + Y + NG E + +AR+ PD++I D+ + ++G E Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNGFE 1177 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KED + IP+I +TA + + + G + YI KP + I +K+ I Sbjct: 1178 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 1234 >gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134] gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134] Length = 1290 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 68/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED ++N + ++T NG+EA+E A+ + D+I+MD+Q+ E+ G E Sbjct: 1164 KILLVEDTKINQLVVAKFLKTWQLTIEYALNGVEAVEQAKNNHYDLILMDLQMPEMDGYE 1223 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + P+IA+TA A+ + ER + G Y++KP S + I ++I Sbjct: 1224 ATRKIRLLPAHKNTPIIALTASALVEERERAFESGVNDYLTKPFSPNELYNKIIRHI 1280 >gi|330504290|ref|YP_004381159.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918576|gb|AEB59407.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 244 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + G+ +G + D++I+D+ L + G Sbjct: 6 KSILLVDDDQEIRELLETYLSRVGFQVRAVADGGAFRQSLCAESADLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E ++P+I +TA + + D + G + Y+ KP S + IK + Sbjct: 66 SLCRWVREHQRFAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 235 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + +V+IVED +L + +G+ + + +G A PDVI++D L Sbjct: 1 MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL++ ++ + D+ + IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 QSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|222148303|ref|YP_002549260.1| two component response regulator [Agrobacterium vitis S4] gi|221735291|gb|ACM36254.1| two component response regulator [Agrobacterium vitis S4] Length = 123 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 97/123 (78%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKVMIVEDNELNMKLFRDLIE SGY +QTRNGMEALELAR+H PD+I+MDIQL E+S Sbjct: 1 MPKKVMIVEDNELNMKLFRDLIEASGYATIQTRNGMEALELARKHHPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+DSEL IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKQDSELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFLETIKTYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 221 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ D+II+D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 225 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + G+ +G EL +++ ++I+DI + +++G Sbjct: 1 MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ KQ ++ PVI +TA D G + Y+ KP S IK + Sbjct: 61 LQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+ +V+D +++ + +E G+ + NG L+ ++ KPD++I+D+ L IS Sbjct: 1 MGKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K++++ +P++ +TA + D+ G + YI+KP S + +K + Sbjct: 61 GEELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 230 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D E L + + G+ + NG ++ + D++++DI L G Sbjct: 1 MPKLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGPDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + K+I++ + IP+I +TA + D + G + YI KP S + I + Sbjct: 61 LSLCKEIRK---ISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++V+D + + R E GY + +GMEA+E+ R+ D+II+D+ + E+ G Sbjct: 1 MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ +EIPVI ++A + D+ + G + Y+ KP S M +K I Sbjct: 61 FSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB [Acidithiobacillus caldus ATCC 51756] gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB [Acidithiobacillus caldus ATCC 51756] Length = 247 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E +L R ++ G+ + +A E R P +I++D L SG+ Sbjct: 12 RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ Q +P+I +TA +GD + G + Y+SKP S ++ + + Sbjct: 72 WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131 >gi|91205788|ref|YP_538143.1| response regulator PleD [Rickettsia bellii RML369-C] gi|91069332|gb|ABE05054.1| Regulatory components of sensory transduction system [Rickettsia bellii RML369-C] Length = 457 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D E N+KL + Y + +G EAL + ++ K D++++D+ + E+ Sbjct: 1 MSANILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKVDIVLLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K+IK D E IPV+ VTA + D + + G + +++KPI+ + IK Sbjct: 61 GFEVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSL 119 Score = 62.8 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 9/127 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E + ++KPD+I++ L+ L Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEET-DTINEYKPDLIVISSTLENEDPL 211 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMK-------GDEERIRKGGCEAYISKPISLSIFMET 115 + ++ E+ + ++ + + + + + G Y PI S Sbjct: 212 RVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAAR 270 Query: 116 IKKYIGE 122 IK + Sbjct: 271 IKTQLRR 277 >gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 253 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D ++ ++ SGY + +G +ALEL PD+I++D+ L ++ G Sbjct: 11 ATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 71 AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 127 >gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium] gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium] Length = 249 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D K+ + + GY NG EAL++ H D+II+D+ + ++ G Sbjct: 13 HLLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYG 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +IP+I +TA D+ + G + Y+ KP S I+ + Sbjct: 73 VCQEIRKES---DIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128 >gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1245 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDNE+N ++ +L+E + NG +E+ R D+++MD+Q+ + G Sbjct: 826 ARILLVEDNEINQQVATELLEMAHLEVAVASNGQIGVEMVRAEPFDLVLMDMQMPVMDGY 885 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I++++ Q +P++A+TA AM GD E+ G +++KPI + K+I Sbjct: 886 TAARTIRQEARFQTLPILAMTANAMAGDREKCLAAGMNDHVAKPIDPKELFTALAKWI 943 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58 +V+IV+D+ + ++F L + G+ A + EAL A ++ D ++ Sbjct: 678 RVLIVDDSATSREIFEQLAISLGFDAHLAASASEALLAIYRAEAADTPYQLVYTDWKMPG 737 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGG---CEAYISKPISLSIFME 114 + G+E+T ++K ++LQ P +I VTA+ E +R+ G + +++KP + S ME Sbjct: 738 MDGVELTHRLKTATDLQHPPKIIMVTAYDRD---EMLRRLGSNTVDGFLTKPATCSSLME 794 Query: 115 T 115 Sbjct: 795 A 795 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +DN + L+ Y ++G AL R PD+++ D+ + E+ G E Sbjct: 649 KIVLADDNADMRNYVKRLLSQQ-YEVEAVKDGAAALAAIRGQLPDLVLTDVMMPEVDGFE 707 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ + + +E+P+I ++A A + + G + Y+ KP S + ++ + Sbjct: 708 LLRELRANPQTKELPIILLSARAGEESRIEGLEAGADDYLIKPFSARELLARVEANL 764 Score = 90.2 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 2/108 (1%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 + LIE G A+ + EAL Q +PDV++ DI + E+ G + +Q++ Sbjct: 1179 REFIVFLIEQYGGSAIAVASANEALVTLTQFQPDVLLSDIGMPEVDGYMLIQQVRATPPA 1238 Query: 75 Q--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q +IP IA+TA+A + D + G + +I KP+ + +E I + Sbjct: 1239 QGGQIPAIALTAYAGEIDYQHAMSVGFQRHIPKPVEPTKLVEVILSLV 1286 >gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED + + + +E Y ++G E +E + + D+I++D+ + ++SG Sbjct: 1 MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I++ IP+I +TA ++ + G + Y++KP + I+ + Sbjct: 61 EEVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALR 117 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D+ + R + +GY +G+EALE+ + +PD +++D+ + + GLE Sbjct: 2 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++P++ +TA + G + Y+ KP +L + I+ + Sbjct: 62 VCRQLRSTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 118 >gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 240 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++ ED+ + GY + +G+EAL A +++PDV+++D+ + I Sbjct: 1 MPQTVLLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + ++ + + PV+ +TA D G + Y+ KP + ++ + Sbjct: 61 GLQVCRVLRAEGD--RTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|224537099|ref|ZP_03677638.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus DSM 14838] gi|224521276|gb|EEF90381.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus DSM 14838] Length = 752 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ EDN+ ++ + T Y ++ NG EA+ +A Q PD+I+ DI + ++G Sbjct: 503 TILVAEDNDDMRLFLKNSLSTD-YHVVEASNGEEAMNMALQLNPDIIVCDIMMPVLNGDA 561 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +IK E IP I +TA A K D + G + YI+KP +SI I+ + Sbjct: 562 VCSRIKTSVETSHIPFILLTALADKEDIIKGLDCGADDYITKPFDISILKARIRNLL 618 >gi|182412631|ref|YP_001817697.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177839845|gb|ACB74097.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 367 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D N+ + + + +GY + +G EAL Q PD+I++D+ + I Sbjct: 1 MSETILIVDDTPANLCVLVETLGAAGYRLMVAEDGEEALAQTAQTVPDLILLDVMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++++ + PV+ +TA D+ + G YI+KPI + ++ ++ Sbjct: 61 GFETCRRLRAQPTTADTPVLFMTALNETPDKVKAFAAGGVDYITKPIEHEEALARVRTHL 120 >gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 235 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + +V+IVED +L + +G+ + + +G A PDVI++D L Sbjct: 1 MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL++ ++ + D+ + IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 QSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|86749532|ref|YP_486028.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86572560|gb|ABD07117.1| response regulator receiver domain protein [Rhodopseudomonas palustris HaA2] Length = 121 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 81/121 (66%), Positives = 101/121 (83%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EAL L R+ PD+I+MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGHEALALVRKLHPDLILMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLEVTRWIKDDPELRHIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|78067197|ref|YP_369966.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77967942|gb|ABB09322.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 280 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 40 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 99 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 100 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 157 Query: 121 GE 122 Sbjct: 158 RR 159 >gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] Length = 231 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ + R + +GY + +G EAL+L + +PD+ I+D+ + + GL+ Sbjct: 2 KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++P++ +TA + G + Y+ KP +L + + A Sbjct: 62 VCRELRSHGD--DLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRA 119 >gi|237719712|ref|ZP_04550193.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229450981|gb|EEO56772.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1379 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE ++L L+ Y + NG E + + D+I+ D+ + E+ G+E Sbjct: 1128 ILVVEDNEELLQLMVKLLSRE-YNVFKAENGKEGVTILENEDIDLIVSDVMMPEMDGIEF 1186 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K + E+ IPVI +TA + D + G +A+I+KP +L++ I+ + Sbjct: 1187 CKYVKGNLEISHIPVILLTAKNKEEDRAEAYEVGADAFIAKPFNLAVLHARIRNLL 1242 >gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 238 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IV+D+ ++L + +E G++ L+ +G AL+ +++ D+ I+DI + ++ Sbjct: 1 MKKTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+++E + P++ ++A + D+ G + +I KP S + ++ ++ Sbjct: 61 GYQLIKKVRETLKF---PILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 232 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K+ V+I+ED+ ++L + ++ +GY + +G E LEL PD II+DI L + Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ K I+ + + +P+I +T D + G + YI KP + + +K Sbjct: 61 LNGWEVCKTIRMED--RHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKT 118 Query: 119 YIGE 122 + Sbjct: 119 VLRR 122 >gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] Length = 232 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED+E R L+E GY + +G E L+ D++I+DI + ISG Sbjct: 1 MDKLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNISG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+E S +P++ +TA +++ D+ G + Y+ KP S + I+ I Sbjct: 60 IEVCRRIREKS---YVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E + L + +GY ++ R+G EA++ R+H D++++D+ + E+ G Sbjct: 1 MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+ +P++ VTA D + K G + Y++KP + + I+ + Sbjct: 61 WETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+++ED ++ + +E +G+ + G L L RQHKPD++++D+ L + G Sbjct: 1 MSTVLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++I+ S ++P+I VTA + D + G + YI KP S+ + ++ + Sbjct: 61 LDVAREIRRQS---DVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|289649401|ref|ZP_06480744.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 782 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDN +N + + ++ G + + G EALE Q D+++MD + + G Sbjct: 658 MARVLLVEDNPVNQLVAKGILGKLGCEVIISSRGGEALEQLEQDHFDLVLMDCNMPVMDG 717 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 718 YEASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 776 >gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1385 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 59/116 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN + L+ ++GY ++G+ AL+ R H PD++I D+ + + GL Sbjct: 636 ARLLVADDNADMREYLARLLHSAGYQVDTVKDGLAALQAVRAHAPDLVISDVMMPGLDGL 695 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++ D +PV+ ++A A + + G + Y+ KP + + + ++ Sbjct: 696 GLVAALRADPRTASVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRA 751 >gi|237799587|ref|ZP_04588048.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022443|gb|EGI02500.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 227 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+EDNE +L R+ E G+ +G L+L R K D +I+DI L E+ G E Sbjct: 2 RLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q++ E ++PVI +TA D + G + Y++KP M + + + Sbjct: 62 VMDQVR--DEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRS 119 >gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] Length = 227 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K+ +VED E L R +E G+ G EA ++ PD++I+D L +S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E + +P+I +TA + + R G + Y+ KP S M +K + Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3] Length = 258 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+E ++ ++ G+ + +G +A E+++ +KPD++++D+ L + Sbjct: 35 MKARILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLPGMD 94 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI + I+ +S ++P++ +TA + D R + G + Y++KP + + ++ + Sbjct: 95 GIEICRLIRAES---DVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARL 151 Query: 121 G 121 Sbjct: 152 R 152 >gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 231 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D + + +E SG + N +A EL + PD+II DI + ++ G Sbjct: 6 KILLVDDEPGVRESVQAYLEYSGDFNVKVASNANQAWELIEKEIPDLIISDIMMPQVDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ED Q +PV+ +TA M D + GC+AY+SKP +K + Sbjct: 66 QFLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGCDAYLSKPFDPEELEAIVKNLLER 125 >gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 236 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK + +VED + +L ++ +GY +G L + KPD+ ++DI L I Sbjct: 1 MSKKLIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++IKE S L++IP+I +TA + D+ + G E YI+KP S+ + IK Sbjct: 61 DGLEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVI 120 Query: 120 IGE 122 Sbjct: 121 FRR 123 >gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED L +D +E Y G +A+E+ + KP ++I+D+ L ++G Sbjct: 1 MSRILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI + I+ IP++ ++A + D+ + G + YI+KP + + + Sbjct: 61 YEICQNIR---IKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E S + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E S + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q ++II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM 1131] gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM 1131] Length = 232 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL+ D++++D+ + + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ + + PVI +TA + D+ + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQ---IHQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 225 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IV+D+ +L +E G+ + +G++AL K D++I+DI + + Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L ++ Y + G +ALE +++ D+ I+D+ + ++ Sbjct: 1 MAYNILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVMMPDLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I++ PVI +TA + D+ G + Y++KP + +K + Sbjct: 61 GFSLLKKIRKHYYF---PVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +M+V+D+E L R + GY NGME L L PD++I+D+ + ++ Sbjct: 1 MRQHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++E +P++ +TA D + G + Y+ KP +L + ++ + Sbjct: 61 GWEVCRRVREGGST--VPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V+IV+D+ L + E G+I +G +AL+ R+ KPD++++D+ L I Sbjct: 1 MSKNSVLIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKIREQKPDIVVLDLMLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++ ++ +IP++ +TA + D + G + Y++KP S + ++ Sbjct: 61 DGWEVCRRARKIG---DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAI 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|323495068|ref|ZP_08100157.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546] gi|323310725|gb|EGA63900.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546] Length = 240 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEI 59 M K+++V+D++ +L + + GY +G + Q PD+I++D+ L Sbjct: 1 MSAKILVVDDDQEICELLEEYLTKQGYQVDAVNDGEQMKATLEQQGYPDLILLDVMLPGD 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +Q++ S +P+I +TA + D+ + G + YI+KP + IK Sbjct: 61 DGFTLCQQVRRHS---SVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D L +E GY ++ +G EA+ + + +++++DI + ++ G E+ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIMMPKMDGYEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+QI+ +P+I ++A D+ G + Y++KP + + + + Sbjct: 66 TRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 >gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 225 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA D + K G + Y+ KP I+ + Sbjct: 64 CKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVLRR 118 >gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 230 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + L ++ GYI + G+EAL+L + + D+II+D+ + ++G++ Sbjct: 5 TILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVMMPVVNGID 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E P+I ++A D+ G + Y++KP + + +K + Sbjct: 65 ACIKIREQ---YNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRR 120 >gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D ++ ++ G+ +GM A+ +A + +P VI++D+ + + G Sbjct: 7 AKILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVMMPGMDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++++ E + +I +TA D + G + Y+ KP S + I + Sbjct: 67 EVCRLLRKNGE--NVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLR 123 >gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1361 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN + + S Y L+ NG EAL + ++ + D+I+ D+ + + GL++ Sbjct: 1110 ILIVEDNADIRQYLSRELGKS-YRTLEAENGEEALNILKEQEIDLILTDVMMPVMDGLKL 1168 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K IK++ IPVI ++A ++ + G + YI KP S+++ I+ Sbjct: 1169 CKHIKQNLYTCHIPVIMLSAKTDLKEQIEGLQMGADDYIPKPFSMALVTTKIRNLFR 1225 >gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 247 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + + GY ++G EAL+ + +PD++++D+ + + GLE Sbjct: 2 RVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRVDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++++ + ++PV+ +TA D G + Y+ KP +L ++ Sbjct: 62 ACRRLRARGD--DLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRAL 115 >gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V+I +D+ ++ R+++ + Y NG+EA++ D++I+D+ + I Sbjct: 1 MM-RVLIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVMMPHID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +QI++ IPV+ +TA D+ + G + Y++KP S+ + ++ + Sbjct: 60 GLSLLEQIRK--GGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +++ +II+DI L E+ Sbjct: 1 MKRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWTVCRRIRKKS---NVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLM 117 >gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] Length = 234 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I+ED E + + +E GY + +G+E +E R++ PD+I++D+ L +++ Sbjct: 11 MAKTILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLMLPKMN 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S+ +P+I +TA + + + YI+KP S+ + ++ I+ + Sbjct: 71 GFSVCEAIRKESQ---VPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVL 127 Query: 121 GEA 123 A Sbjct: 128 RRA 130 >gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] Length = 219 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED L + + +GY +G EA + Q D+I++DI L EI G Sbjct: 1 MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ I+ IPVI +TA A D+ + K G + Y++KP ++ + ++ + Sbjct: 61 YELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|1729783|emb|CAA70931.1| colR [Pseudomonas fluorescens] Length = 227 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ L + PVI +TA D + K G + Y+ KP +LS I+ + + Sbjct: 62 LCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120 >gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917] gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917] Length = 256 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D ++ ++ +GY + +G +ALEL + PD++++D+ L ++ G Sbjct: 12 ATILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLPKLDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 72 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 128 >gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] Length = 243 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D ++L + G+ +G + L++AR +PD I++D+ + + G Sbjct: 16 ARILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGF 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + PV+ +TA D+ G + Y++KP SL + ++ + Sbjct: 76 GLLRRLRADGV--DAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 133 Query: 123 A 123 A Sbjct: 134 A 134 >gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 235 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L + G+ G E L+ AR +PD +I+D+ + + G Sbjct: 8 ARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ D + PV+ +TA D+ G + Y++KP SL + ++ + Sbjct: 68 GLLKRLRADGV--DAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|157827084|ref|YP_001496148.1| response regulator PleD [Rickettsia bellii OSU 85-389] gi|157802388|gb|ABV79111.1| response regulator PleD [Rickettsia bellii OSU 85-389] Length = 457 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D E N+KL + Y + +G EAL + ++ K D++++D+ + E+ Sbjct: 1 MSANILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKVDIVLLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K+IK D E IPV+ VTA + D + + G + +++KPI+ + IK Sbjct: 61 GFEVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSL 119 Score = 62.8 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 9/127 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E + ++KPD+I++ L+ L Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEET-DTINEYKPDLIVISSTLENEDPL 211 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMK-------GDEERIRKGGCEAYISKPISLSIFMET 115 + ++ E+ + ++ + + + + + G Y PI S Sbjct: 212 RVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAAR 270 Query: 116 IKKYIGE 122 IK + Sbjct: 271 IKTQLRR 277 >gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 237 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ ++L + +G+ +G AL A+ H+PD++++D+ L ++ G Sbjct: 12 ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++E PV+ +TA D+ R G + Y++KP SL I+ + Sbjct: 72 EVIRMLRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 129 >gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED++ +L + + T Y +G+E ++ + D+I++D+ + ++ Sbjct: 9 MNYHILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLN 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+ S IP+I +TA + D+ + G + YI+KP S + + ++ + Sbjct: 69 GFEVAKMIRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVL 125 Query: 121 GEA 123 + Sbjct: 126 RRS 128 >gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL J1-175] Length = 225 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ + +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCKKMR--TSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ + + ++ G E +E AR+HKP+V+I+DI L + G Sbjct: 1 MDKILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++ E + +I +TA + D+ + G + YI KP + IK + Sbjct: 61 LEVCKILRQ--EFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] Length = 240 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 67 VTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123 >gi|146306182|ref|YP_001186647.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145574383|gb|ABP83915.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 243 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + +G+ +G + D++I+D+ L + G Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFAVRAVADGEGLRAALVEEPADLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+E +PVI +TA + + D + G + Y+ KP S + IK + Sbjct: 66 SLCRWIREHQRFAAVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ L + PVI +TA D + K G + Y+ KP +LS I+ + + Sbjct: 62 LCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120 >gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3] gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L+ A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +E +G + RNG EA+ R+ D+II+DI + E+ Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGNIDLIILDIGMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI++ +P++ ++A + D + G + Y++KP S + +K + Sbjct: 61 GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|56416693|ref|YP_153767.1| response regulator PleD [Anaplasma marginale str. St. Maries] gi|222475058|ref|YP_002563473.1| Putative two-component response regulator with GGDEF and receiver domains [Anaplasma marginale str. Florida] gi|255003037|ref|ZP_05278001.1| response regulator PleD [Anaplasma marginale str. Puerto Rico] gi|255004160|ref|ZP_05278961.1| response regulator PleD [Anaplasma marginale str. Virginia] gi|56387925|gb|AAV86512.1| hypothetical protein AM475 [Anaplasma marginale str. St. Maries] gi|222419194|gb|ACM49217.1| Putative two-component response regulator with GGDEF and receiver domains [Anaplasma marginale str. Florida] Length = 455 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N+KL + + Y L +G EA++LAR+ PD+I++D+ + + Sbjct: 1 MTAKILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLAREKHPDLILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119 G E ++++ D IPV+ VTA D G + +++KPI+ I+ Sbjct: 61 GYETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 58.2 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+MI++ +++ + +++ N + + L D+ I+D+ GL Sbjct: 157 AKIMILDSDKVRSEHMNSVLQEYFQETAVLDNPSQDVNLQNAESYDLFIIDLNFGG-DGL 215 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMET 115 + ++ + P++ + D R + G YI P+ + + Sbjct: 216 RFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEIGISDYIMAPVDSNELLAR 269 >gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX] gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX] Length = 241 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++++D L + + G+ +G E L LAR +PD+I++D+ L +ISG + Sbjct: 11 HVLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFD 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++ + ++PVI +TA D G + Y++KP S+ + ++ + Sbjct: 71 VCRRLRDEDD--DVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRR 127 >gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++M+V+D+ + L D +E GY NG +ALE + P++II DI + E+ G Sbjct: 11 RRLMLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGY 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+E+S+ IPVI ++A D + G + Y+ KP M ++ + + Sbjct: 71 TLVKLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQ 130 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D L + +GY +G EAL LA KPD++I+D+ L ++ G Sbjct: 24 ARLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGF 83 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ ++P++ +TA D+ + G + Y++KP L + I + Sbjct: 84 TVTRKLRA--AGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 141 >gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] Length = 225 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + G+ +G EL +++ ++I+DI + +++G Sbjct: 1 MAKILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ KQ ++ PVI +TA D G + Y+ KP S IK + Sbjct: 61 LQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|294495691|ref|YP_003542184.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292666690|gb|ADE36539.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 285 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + Y +G E L+ + D+I++DI + +SG + Sbjct: 8 KILIVDDEPQNLDLMEAYLSHL-YEITLAESGEECLQKVEEKDIDLILLDIMMPGMSGYD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +KE + IP+I VTA + K D + + G + +++KP++ + +K + Sbjct: 67 VAKTLKESESTRHIPIIMVTALSEKEDRIKSIEVGADDFLTKPVNRVELLTRVKSLLR 124 >gi|238894841|ref|YP_002919575.1| putative two-component response transcriptional regulator [Klebsiella pneumoniae NTUH-K2044] gi|238547157|dbj|BAH63508.1| putative two-component response transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 246 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L D +E SGY A NG + + H+ D+I++DI + GL Sbjct: 6 HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + Q+IPV+ +TA D + G + Y+ KP + IK + Sbjct: 66 LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123 >gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ ++L + GY + +G+EA+E Q D++I+D+ + + Sbjct: 1 MSVRILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVMMPNLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK+I+++S IP++ +A D+ G + Y++KP + + +K + Sbjct: 61 GLEVTKRIRKNS---TIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216] Length = 389 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D N+ L + ++ +GY + G EALE PD+I++DI + +++G E Sbjct: 12 KILVVDDIATNVLLLKTILGKAGYRIVTATGGREALEKVESESPDLILLDIMMPDMNGYE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K D IPVI ++A + + K G Y+SKP + + + ++ Sbjct: 72 VIERLKADERFCRIPVIFLSALHDSENIVKGFKMGASDYVSKPFNHEELITRVAHHM 128 >gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] Length = 223 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D +L +K R +E +G EAL+ A+ + D++++D+ L ++ G Sbjct: 4 KKILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLPKMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + I+E ++P++ +TA + D+ + G + YI+KP ++ IK + Sbjct: 64 QVCQAIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 120 >gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 269 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D ++ ++ +GY + +G +ALE+ + PD++++D+ L ++ G Sbjct: 24 ATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVMLPKLDGF 83 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 84 AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|307718269|ref|YP_003873801.1| two-component regulatory system response regulator [Spirochaeta thermophila DSM 6192] gi|306531994|gb|ADN01528.1| two-component regulatory system response regulator [Spirochaeta thermophila DSM 6192] Length = 431 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D N++L +++ YI +G EAL + D+I++DI + E+ G E Sbjct: 10 RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTPFDLILLDIMMPEMDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ + + ++IP+I ++A A + + + G + Y+ KP ++ ++ + Sbjct: 69 VCRRVRSNPKTKDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQL 125 >gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri ATCC 29473] gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri ATCC 29473] Length = 232 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL L + D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLL-DNSIDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ + PVI +TA + D + G + Y++KP + + I+ + Sbjct: 60 IETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016] gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 237 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++++D+ +L +++ G+ + NG +AL+ + K D+ ++DI + ++ G E Sbjct: 15 KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQ++ E ++P++ +TA + + + + G + Y++KP + + IK + Sbjct: 75 FCKQVRRYYE--DMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRR 131 >gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1486 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 74/116 (63%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N+ + ++ Y + +NG EA+ LA+ +PD+I+MDI L I+GLE Sbjct: 1370 ILLAEDNETNITTISNYLKAKKYKLILAKNGKEAISLAQSQQPDLILMDICLPGINGLEA 1429 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QI++ +L++IP+IAVTA A+ GD ER + G Y+SKP+ L + I+ + Sbjct: 1430 IQQIRQLPDLKDIPIIAVTALALTGDRERCLEAGANEYLSKPLKLKELVALIQSLL 1485 >gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS] gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS] Length = 1262 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N ++ + IE+ G I NG EA+ + D ++MD+Q+ E+ G+ Sbjct: 946 ARILVVEDNSINQQVIQKTIESEGLIVEIANNGKEAVMMVDNIHFDAVLMDMQMPEMDGM 1005 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I++ ++ +P+IA+TA AM G E++ G YI+KP + ++K+I Sbjct: 1006 EATQLIRQKTQHDNLPIIAMTAHAMSGVREKLLAVGMNDYITKPFDVDDLFSVLEKWI 1063 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 68/128 (53%), Gaps = 14/128 (10%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL----ELARQHKPDVIIMDIQLQEI 59 K +IV+DN+ + + + + T + +G A+ A+ D++ +D ++ + Sbjct: 799 KALIVDDNKTSRTILQQELNTFSLQVIAVDSGEAAIVALETAAQTQPYDLVFLDWKMPGM 858 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFA-----MKGDEERIRKGGCEAYISKPISLSIFME 114 +G+E + IK+++ L + +I +TAF+ + D++ + +A+++KP++ S+ + Sbjct: 859 NGIETARCIKQNANLPPVSIIMMTAFSRENFLTETDKDYL-----DAFLTKPVTQSLLFD 913 Query: 115 TIKKYIGE 122 TI G+ Sbjct: 914 TIMTVFGK 921 >gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ +L R +E +G+ L+ +G AL QH DV+++D+ L E+ G ++ Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++ +PVI +TA + D G + Y+ KP S + ++ + A Sbjct: 62 AEVRRRETW--LPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRA 117 >gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+V++VED ++ D + + + + NG +AL +PD+II+DI + E+ Sbjct: 1 MKKRVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +Q++ S +P+I +TA + D+ + G + Y++KP S + + + Sbjct: 61 GWEVCRQVRSRSG---VPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALM 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +M+VED +L RD +E +G+ +G EA + Q KP ++I+D+ + + G Sbjct: 1 MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti] gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 227 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K+ +VED E L R +E G+ G EA ++ PD++I+D L +S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E + +P+I +TA + + R G + Y+ KP S M +K + Sbjct: 61 GIELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|307153766|ref|YP_003889150.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983994|gb|ADN15875.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 374 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ N+ L + ++E G + ++G+ AL ++ P +I++D+ + ++ G E+ Sbjct: 15 ILVVDDSPDNLFLIQTILEEQGLKVVLAQDGLAALNRIQESLPKLILLDVMMPKMDGFEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ + L IP++ +TA+ + G + +I KP+ + + ++ + Sbjct: 75 TRRIRANENLPFIPILLITAYDQPS-AVKGLDAGADDFIRKPVDVDELLARVRSLLR 130 >gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] Length = 242 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D ++L + G+ NG E L+ AR +PD +I+D+ + + G Sbjct: 18 RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFG 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ D + PV+ +TA D+ G + Y++KP SL + ++ + A Sbjct: 78 MLRRLRADGV--DAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA 135 >gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] Length = 231 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + + + GY NG EAL+ R D+II DI + ++ G Sbjct: 1 MTHILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMDG 60 Query: 62 LEITK---QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + Q++ED P I +TA D G + Y++KP S +K Sbjct: 61 YDFIDAVLQLREDQ-----PFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKN 115 Query: 119 YIGE 122 + Sbjct: 116 LLRR 119 >gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] Length = 1163 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 74/121 (61%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +KV++V+D+ N+ +ET G + + RNG EA+E + D+++MD+ + E+ G Sbjct: 1039 RKVLLVDDDVRNIFALTSALETKGAVVVIGRNGREAIEKLNEVEDIDLVLMDVMMPEMDG 1098 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1099 FEATMEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGANDYLAKPIDLDRLFSLIRVWLP 1158 Query: 122 E 122 + Sbjct: 1159 K 1159 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + DL GY L E +LA++ PD I++D++L + SGL + Sbjct: 773 ILVVEDEPNFAHILYDLAHELGYQCLVAHGADEGYDLAKEFVPDAILLDMRLPDHSGLTV 832 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP + + + Sbjct: 833 LQRLKEHAGTRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 884 Score = 72.9 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED++L + LI +ALEL R D +++D++L ++ G Sbjct: 893 KRVLLVEDDDLQRESIARLIGDDDIEITAVGLAQDALELLRTTIFDCMVIDLKLPDMLGN 952 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ K++ + PVI T + DEE Sbjct: 953 DLLKRMSTEDICSFPPVIVYTGRNLTRDEEA 983 >gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c] Length = 266 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 61/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+IV+D + + + +LQ + EA + PD+I++D L SGL Sbjct: 38 KRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGL 97 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T++ ++ S +EIP+I +TA + + D + G + Y+ KP S + I+ + Sbjct: 98 ELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRR 157 >gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML+K++IV+D + + +D + GY + NG EA+E + D+I++DI + I Sbjct: 1 MLEKILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 230 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + GY + NG EAL+ R + ++I+MDI + ++ Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I+ L IP+I +T + D+ + GC+ YI+KP L + + Sbjct: 61 GFEAIKRIR---RLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|159898013|ref|YP_001544260.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891052|gb|ABX04132.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++D ++ R +E GY ++ NG EAL AR KPD++++D+ + E++ Sbjct: 1 MDYTILLIDDEAKLRQVIRLSLEQEGYRVVEASNGREALYRARIEKPDLVVLDLMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E + S+ PVI +TA D+ + G + YI+KP ++ + I+ + Sbjct: 61 GTEF---LLAFSKESNTPVIMLTARVEDHDKIIGLELGADDYITKPFNMRELIARIRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +ET+GY +G A E P+++++D+ L I +E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDRME 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS +PVI +TA D+ + G + Y+ KP + +K + Sbjct: 67 VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122 >gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781] gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763] gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299] gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus A6224] gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948] gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117] gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765] gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102] gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus 132] gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754] gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819] gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus MR1] gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796] gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus] gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122] gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781] gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763] gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299] gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus A6224] gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948] gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20] gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102] gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765] gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117] gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981] gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754] gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819] gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796] gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus JKD6159] gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46] gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131] gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172] gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189] gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193] Length = 219 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + + + Y +G + L+ A H D+II+D+ L I+G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ Q P+I +TA + D+ G + YI KP + + I+ + Sbjct: 61 LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1311 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ ++ + + L+ +G E +A Q KPD+II D+ + ++ G+E Sbjct: 1065 TILLVEDNDEFRHYLQEELSRH-FTVLEASDGEEGETVALQQKPDIIITDLMMPKMDGIE 1123 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+IK + E+ IPVI +TA A +EER K G +AY++KP I I + + Sbjct: 1124 LCKRIKHNIEVSHIPVILLTASASVENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1182 >gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str. Sunitezuoqi] Length = 232 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + L+ GY +G E A+ D++I+D L +GLE Sbjct: 2 RILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSYDLLILDWMLPGKTGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I +Q++ + PV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 62 ICQQLRRQGKT--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 119 >gi|325104532|ref|YP_004274186.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324973380|gb|ADY52364.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1368 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN + + Y NG +AL++ D+II D+ + EI G++ Sbjct: 1118 KLLVVDDNYEIVDFLSSHLNK--YQVAVAYNGKQALDILENDSFDLIISDVMMPEIDGIQ 1175 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K+IK++ IPVI +TA + + + G + Y++KP S+S+ ++ + Sbjct: 1176 LCKKIKQNINTCHIPVILLTAKNETQHQIKGLEAGADDYVTKPFSMSLLTAKVQSIL 1232 >gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E ++E G+ +G+ AL +H D++++D+ L +SG Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRALRQRS---TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] Length = 234 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G +AL ++P++I++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRAKS---NVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121 >gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] Length = 224 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + ++ R E G+ + +G+EA++ A + D+I+MDI + + G Sbjct: 1 MVKILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENYDLIVMDIMMPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ E +PVI ++A + D+ G + Y+ KP S M I + Sbjct: 61 FSACREIRKTHE--NVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 229 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 61/123 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++ +VED E L + +E GY G EA ++ PD++I+D L IS Sbjct: 3 MSPRITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEAEIHLQERVPDLLILDWMLPGIS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + + R G + Y+ KP S + ++ + Sbjct: 63 GIELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAML 122 Query: 121 GEA 123 A Sbjct: 123 RRA 125 >gi|71737625|ref|YP_276201.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558178|gb|AAZ37389.1| DNA-binding response regulator ColR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 227 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 220 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + +E G+ RN +E LELA +H+PD++I DI + ++ Sbjct: 1 MAAHLLLVDDDPGIRLALQAYLEDEGFGVTTARNAIEGLELAEKHQPDLVITDIMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++++ + PV+ +TA D + + GC+AY+ KP + ++ + Sbjct: 61 GYRFLQKLRALPRFRYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNLL 120 Query: 121 GEA 123 + Sbjct: 121 DRS 123 >gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++ + + + +G A E+ R PD+I++D+ L + Sbjct: 1 MKARILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASDPDLILLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +QI+ +S ++PV+ +TA + D R + G + Y+ KP + + +K + Sbjct: 61 GIQVCQQIRAES---DVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] Length = 226 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED E ++ + GY + +G E LE A D++++DI L +SG Sbjct: 1 MPKILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIMLPSMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ +S+ +PVI VTA D+ G + YI+KP + + I+ + Sbjct: 61 MEVLRRLRRESQ---VPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALR 117 Query: 122 E 122 + Sbjct: 118 K 118 >gi|116049556|ref|YP_791640.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] gi|115584777|gb|ABJ10792.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa UCBPP-PA14] Length = 651 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 67/117 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ + +P+IA+TA A++GD E + G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 230 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I +DNE + + + E G++ L +G+EA+++ ++ P ++++D+ + + Sbjct: 1 MDKYILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSKYHPLLLLLDVMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ S +P+I +TA D G + YI KP S M I+ + Sbjct: 61 GFEVCREIRQKS---NVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300857600|ref|YP_003782583.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685054|gb|ADK27976.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205340|gb|ADL09682.1| Two-component regulatory protein [Corynebacterium pseudotuberculosis C231] gi|302329894|gb|ADL20088.1| Two-component regulatory protein [Corynebacterium pseudotuberculosis 1002] gi|308275579|gb|ADO25478.1| Two-component system transcriptional regulatory regulatory protein [Corynebacterium pseudotuberculosis I19] Length = 233 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 61/121 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D +++ +E G+ L + + +L +++ D++I+D+ L + SG Sbjct: 4 RRVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLLGEYRCDLVILDVMLPDASGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ ++ PVI +TA + + G + Y++KP S + + + Sbjct: 64 ALCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SK82] gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SK82] gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 236 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D + ISG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGISGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|254424005|ref|ZP_05037723.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Synechococcus sp. PCC 7335] gi|196191494|gb|EDX86458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Synechococcus sp. PCC 7335] Length = 617 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 68/114 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D N+ + L+ ++GY +Q+ NG+EAL LA+ H+P +I++DI + ++ G E Sbjct: 22 RILIVDDTPTNLFVLSKLLTSAGYEVIQSSNGLEALMLAQSHQPALILLDIMMPDMDGHE 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + ++++ S IPVI ++A ++ + + G Y++KP + ++ Sbjct: 82 VCRRLRTVSATAHIPVIFLSALDAPLNKIQAFRSGAADYVTKPFQTEEVIARVQ 135 >gi|17232800|ref|NP_489348.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134447|dbj|BAB77007.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 437 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N+K+ + ++ G+ AL +G ALE PD+I++D+ + I G E Sbjct: 12 VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + Q PVI +TA + D+ + + G YI+KP + +K ++ Sbjct: 72 CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHL 127 >gi|323498262|ref|ZP_08103264.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326] gi|323316690|gb|EGA69699.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326] Length = 240 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQE 58 M ++++V+D+E +L + + SGY +G EAL+ + PD++++D+ L Sbjct: 1 MNARILVVDDDEEIRELLDEYLTKSGYQVATVGDG-EALKQHLEVHGYPDLVLLDVMLPG 59 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + + I+ +S +P+I +TA + + D+ + G + YI+KP + + IK Sbjct: 60 DDGFTLCQYIRRES---SVPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKA 116 Query: 119 YIGE 122 + Sbjct: 117 VLRR 120 >gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 222 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ + GY + +G AL L R KPD++++DIQL E+ GLE+ Sbjct: 2 VLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQLPELDGLEV 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ D PVI VTA + D+ + G + Y++KP S + +K + A Sbjct: 62 LRRIRADG---NTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRA 117 >gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 224 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + + + GY+ NG EAL ++ PD+I++DI + +++ Sbjct: 1 MAQSILIVDDEKDIVSMLNQYFYKIGYVVYTAINGKEALNAITKN-PDIILLDINMPDMN 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+ P+I +TA D+ + G + Y+ KP S+ + ++ Sbjct: 60 GFTVCEAIR---NYVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|75908776|ref|YP_323072.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702501|gb|ABA22177.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 437 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N+K+ + ++ G+ AL +G ALE PD+I++D+ + I G E Sbjct: 12 VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + Q PVI +TA + D+ + + G YI+KP + +K ++ Sbjct: 72 CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHL 127 >gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] Length = 225 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + G+ +G EL +++ ++I+DI + +++G Sbjct: 1 MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ KQ ++ PVI +TA D G + Y+ KP S IK + Sbjct: 61 LQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|296390015|ref|ZP_06879490.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1] Length = 651 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 67/117 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ + +P+IA+TA A++GD E + G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC 7002] gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus sp. PCC 7002] Length = 227 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +++ G+ G + LELA + D++I+D L + SG+E Sbjct: 2 RILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQYSGVE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ P++ +TA D G + Y+ KP L + ++ + + Sbjct: 62 ICQRVRSLGRT--TPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRRS 119 >gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED ++ + Y ++ + A+ + KP++I++D + S Sbjct: 1 MNNKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRS 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K +K+ E ++IP+I +TA + + D G + YI+KP S + + I+ Sbjct: 59 GIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVW 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] Length = 228 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++V+D +L +K + +E GY +G EA++ A++ + D++++D+ L ++G E Sbjct: 2 KALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPILTGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+E ++P+I +TA D+ + G + YI+KP ++ IK I Sbjct: 62 VCQQIRE---FSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRR 117 >gi|119489827|ref|ZP_01622582.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119454255|gb|EAW35406.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 641 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+DN N+ + ++++ GY ++G AL ++ D+I++D+ + I+ Sbjct: 7 MKSKIIIVDDNSQNLGVLFNILDGLGYDVRVAQDGESALVKIKRDPADLILLDVMMPGIN 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++K D L +IP+I +TA + D + + G YI+KP S + I+ ++ Sbjct: 67 GFETCSRLKSDPSLAKIPIIFMTALSETIDRLKGLQLGAVDYITKPFSHDEVIARIQLHL 126 >gi|15596808|ref|NP_250302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] gi|9947577|gb|AAG05000.1|AE004589_3 probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1] Length = 651 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 67/117 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ + +P+IA+TA A++GD E + G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|330980744|gb|EGH78847.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 645 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634 >gi|254994902|ref|ZP_05277092.1| response regulator PleD [Anaplasma marginale str. Mississippi] Length = 455 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N+KL + + Y L +G EA++LAR+ PD+I++D+ + + Sbjct: 1 MTAKILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLAREKHPDLILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119 G E ++++ D IPV+ VTA D G + +++KPI+ I+ Sbjct: 61 GYETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 58.2 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+MI++ +++ + +++ N + + L D+ I+D+ GL Sbjct: 157 AKIMILDSDKVRSEHMNSVLQEYFQETAVLDNPSQDVNLQNAESYDLFIIDLNFGG-DGL 215 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMET 115 + ++ + P++ + D R + G YI P+ + + Sbjct: 216 RFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEIGISDYIMAPVDSNELLAR 269 >gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 729 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED +N ++ R++++ G +G EA+ L+ + +I+MD+Q+ + GL Sbjct: 606 RRVLLVEDEPINQEIAREMLKDVGLCVDTADDGREAVRLSAERDYALILMDMQMPNMDGL 665 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I++ IP++A+TA D E + G + +++KP+ +++++ Sbjct: 666 EATRCIRQTPRGARIPIVAMTANVFAEDREHCLEAGMDDFLAKPVMPETLYGVVERWL 723 >gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7425] gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7425] Length = 337 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Query: 1 MLK------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54 M+ V+IV+D+ ++ + DL+ET+G+ R+G+ A+E PD+I++D+ Sbjct: 1 MMIQSLESGTVLIVDDSPASLGILSDLLETAGFEVWVARSGISAIEKLNHALPDLILLDV 60 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + + G E ++IK + +LQ++P+I +++ + D+ + + G YI+KP + Sbjct: 61 MMPGLDGFETCRRIKANEQLQDLPIIFMSSLSDTVDKVKGLQLGGVDYITKPFQQEEVLA 120 Query: 115 TIKKYI 120 I+ ++ Sbjct: 121 RIRVHL 126 >gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 246 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---PDVIIMDIQLQE 58 + ++++V+D + G+ G A EL ++ D++++D L Sbjct: 1 MARILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SGL + +Q+++ + P++ +TA D G + Y+ KP L + ++ Sbjct: 61 LSGLSLCQQVRQVD--RATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRA 118 Query: 119 YIGEA 123 + A Sbjct: 119 LLRRA 123 >gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D+ + L +D +E GY L +G E L + +Q PD++I D+ + ++ G Sbjct: 10 SATILLVDDDPNLVLLVKDYLEMQGYRVLTAAHGNEGLAMLQQQTPDLVICDVMMPQMDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + L +PV+ ++A D + + G + Y+ KP + I+ + Sbjct: 70 YSFVSAVRQQTHLSWLPVLFLSAKGQTHDRIKGLQTGGDVYLVKPFEPEELLAQIQALL 128 >gi|186685580|ref|YP_001868776.1| response regulator receiver modulated translation initiation factor IF-2 [Nostoc punctiforme PCC 73102] gi|186468032|gb|ACC83833.1| response regulator receiver modulated translation initiation factor IF-2 [Nostoc punctiforme PCC 73102] Length = 522 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D N+ L + ++E+ GY +G AL L ++ PD+II+D+++ E+ G E Sbjct: 258 RILAVDDVADNLILIQTVLESEGYQIDLAADGTTALSLVKESPPDLIILDVKMPEMDGYE 317 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ + L IP++ ++A+ + + G +I KPI + + ++ + Sbjct: 318 VTRRIRNNHNLPYIPILLISAY-FEASVVQGLDIGANDFIRKPIDVDELLARVRSLLR 374 >gi|330899200|gb|EGH30619.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. japonica str. M301072PT] Length = 619 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 491 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 550 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 551 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 608 >gi|313497378|gb|ADR58744.1| GltR_2 [Pseudomonas putida BIRD-1] Length = 241 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + + SG+ +G D++I+D+ L + G Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 66 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125 >gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2] gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719] gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719] Length = 651 Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 68/117 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ +++P+IA+TA A++GD E + G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G +G +A+ R+ +PD++++D+ L + Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ +S +P++ +TA D + G + Y+ KP + ++ + Sbjct: 61 GMEVCRRIRAESG---VPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex V453] gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex V453] Length = 1031 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ +N+++ R L+ Y L NG++ALE R + D++I D + +SGL Sbjct: 698 TVLLVDDDPVNLQVLRSLLFAENYNLLTASNGVQALEHIRSGQGIDLVITDWMMPGMSGL 757 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--I 120 ++ + ++E L E+P++ +TA ++ D + G ++ KP+ ++ + Sbjct: 758 QLCRTVREQHTLFELPILMLTARSLPEDVRTGLQAGANDFLRKPVDADELRARVRNLLEL 817 Query: 121 GEA 123 + Sbjct: 818 RRS 820 >gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563] Length = 235 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED + + ++ GY ++G LE A++ D+I++D+ L EI+G+ Sbjct: 7 KRILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPEINGI 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ ++P+I +TA D G + YI KP ++ + I+ + Sbjct: 67 EVCRRLR---PTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 123 >gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297] Length = 888 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 69/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN +N+K+ R L+ SG+ G +A++ R PD+++MDIQ+ + GL Sbjct: 770 RILVVDDNAVNLKVTRALLRKSGFQVDIASRGEDAIDSIRASVPDLVLMDIQMPGMDGLA 829 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ +++D + + + +I +TA K D + G Y++KPISL E + +++ Sbjct: 830 TTRLLRQDPDFRHLVIIGLTANVSKEDRQACLDAGMNDYLTKPISLLKLSECLSRWL 886 >gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa 39016] Length = 651 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 67/117 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ + +P+IA+TA A++GD E + G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRRVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 223 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ ++G+EALEL Q K D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58] Length = 651 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 68/117 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ +++P+IA+TA A++GD E + G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|26987748|ref|NP_743173.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24982439|gb|AAN66637.1|AE016291_6 DNA-binding response regulator GltR [Pseudomonas putida KT2440] Length = 241 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + + SG+ +G D++I+D+ L + G Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P+I +TA + + D + G + Y+ KP S IK + Sbjct: 66 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125 >gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D +L +K R +E G +G EA+ LA+Q + DV+++D+ L + G Sbjct: 1 MASVLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKYDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+E E+P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 YEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum JL354] Length = 229 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++VED+ +L GY T +G EAL +A + PD+II+D ++ SG Sbjct: 3 SAKLILVEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ D +P+I +TA + D R + G + Y++KP S + + + Sbjct: 63 IEVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED++ ++ D + G+ GME LE +Q+ D++++D+ L E+ G Sbjct: 4 TRNILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNSFDLVLVDLMLPEMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I+ +S +P++ ++A + R G + Y++KP SL I ++ Sbjct: 64 FTLCKTIRLES---NVPLLIISAKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] Length = 242 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED +L ++ +G++ L + A L PD++++D L +I+ Sbjct: 1 MAVTILIVEDELAIQELIALNLKKAGHMVLCAGDATHAKLLINNVLPDLVLLDWMLPDIT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE + ++ + + IP+I +TA + D+ + G + YI+KP S + IK + Sbjct: 61 GLEFARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 245 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + L ++ +GY G+ A +A K D I++D+ L + G+ Sbjct: 8 KKILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGI 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EIT+++++ E E P+I +TA + D+ + G + Y++KP S + IK Sbjct: 68 EITRRLRQ--ERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRR 125 >gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis HI4320] gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC 29906] gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320] gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC 29906] Length = 232 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL+L D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLDA-SIDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++++ + PVI +TA D + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQNFQT---PVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192] gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192] Length = 651 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 68/117 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRSAERQRYDAILMDCRLPVLDGYSA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ +++P+IA+TA A++GD E + G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLQAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++I+ED E + + GY + +G LELA + D+I++D+ L +++ Sbjct: 1 MSQTILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ +P+I +TA D+ G YI+KP ++ + I+ + Sbjct: 61 GTEVLRRIR---RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNAL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 239 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D +L + +G+ + NG +AL A H PD+ ++D+ L ++ G Sbjct: 11 AKLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPDMDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 71 TVTRRLRASG--KHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128 >gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 229 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED L R + G+ +G+EA+ A + DVI++D+ L + G E Sbjct: 2 RVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ ++A + D R G + Y++KP S I+ I Sbjct: 62 VCRRLRAAGRWA--PVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRR 118 >gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 248 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + ++ G A Q +G+EAL L RQ KPD++++DI L + GL++ Sbjct: 14 VLVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLFRQLKPDMVLLDIHLPGMDGLDL 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+ED + PVI VTA A D+ + G + Y+ KP S + ++ + Sbjct: 74 LRAIREDGQT---PVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRR 128 >gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ ++G+EALEL Q K D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330960502|gb|EGH60762.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. maculicola str. ES4326] Length = 783 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILGKLGCEVVISSHGGEALEQLEHSHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 777 >gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++V+D +++ L+E+ G+ NG ALE+ +II+D+ + +ISG Sbjct: 6 KNVLVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESENISLIILDLMMPDISGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I++ S +P+I +TA + D G + Y+ KP L I+ + Sbjct: 66 EVCRAIRKKSR---VPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRR 122 >gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV+I+ED+E +L ++ Y ++G E + + + + P ++++DI L + Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++I+ L E P+I ++ D+ + G + Y++KP + IK + Sbjct: 61 GYEICQKIR---MLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|224538431|ref|ZP_03678970.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM 14838] gi|224519936|gb|EEF89041.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM 14838] Length = 1426 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDNE ++++ Y L+ +G L+L PD+II DI + + G+E+ Sbjct: 1179 ILIVEDNEELRHFLVNMLQKD-YRILEAADGKSGLDLTVSAMPDLIISDIMMPVMDGIEL 1237 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 + +K++ ++ IP I ++A A D + + G + YI+KP S S I + + Sbjct: 1238 LEAVKKNHDISHIPFILLSAKASLDDRIQGLEYGADDYITKPFSSSYLKARISSLLKQRD 1297 Query: 123 A 123 A Sbjct: 1298 A 1298 >gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E +L +D +E SG+ +G E L+ A + D++I+D+ L G Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLMLPGTDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+++E ++ P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKKVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis Et1/99] gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99] Length = 233 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ L +G +AL L + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALL-DNTVDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 246 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +K+ + +GY L ++G +ALE+ + PD++++D+ L ++ G + Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +S +P+I +TA + G + Y++KP S I + Sbjct: 64 CRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRR 118 >gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED E + L ++ G+ R+G AL LA+ +PD+I++D+ L + Sbjct: 1 MAATILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++++ D V+ +TA A + D+ G + Y++KP S + +K + Sbjct: 61 GLEICRRLQRDGGPY---VLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 236 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+E +L + Y +G AL+ KP++I++D+ L + G Sbjct: 5 QRILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ ++P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIR---TTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 265 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED++ L +E +G+ + +G++ LA Q+ PD+I++D+ L ++ GL + Sbjct: 5 ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA D+ G + YI+KP L IK + Sbjct: 65 CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRR 122 >gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621] gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621] gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 223 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EALEL Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 230 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I +DN +K+ + +E G+ + NG EAL+ P ++++DI + I Sbjct: 1 MDKNILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDVCNPQIVLLDIMMPIID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+ S P+I +TA + D+ G + YI KP S + IK + Sbjct: 61 GMEVCKSIRFKS---NTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 239 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D L + +G+ G EA+ A +++PD++++D+ L ++ G Sbjct: 11 ARLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPDMDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+++++ E P++ +TA D+ G + Y++KP SL + I+ + Sbjct: 71 TVTRRLRDRGEKY--PILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128 >gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] Length = 228 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED++ +L + + T Y +G+E ++ + D+I++D+ + ++ Sbjct: 9 MNYHILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLN 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+ S IP+I +TA + D+ + G + YI+KP S + + ++ + Sbjct: 69 GFEVAKMIRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVL 125 Query: 121 GEA 123 + Sbjct: 126 RRS 128 >gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803] gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803] Length = 227 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M KK +++V+D +++ + + GY + NG +A+++A++ KP +II+D+ + Sbjct: 1 MKKKDIQILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E +QI++ +++ + +TA + G + YI+KPI + + +K Sbjct: 61 EMDGIEACEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 255 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D ++ ++ SGY + +G +ALEL PD+I++D+ L ++ G Sbjct: 13 ATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 73 AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 129 >gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei] gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei] gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED+ + + + G++ +G +E+ +H+PD++++D+ L + G Sbjct: 1 MAEVLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++++ +P+I +TA D + G + Y++KP+ + I+ + Sbjct: 61 FETCRRMRAAGP---VPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 227 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ED+ ++ PVI +TA D + K G + Y+ KP +LS ++ + Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRR 119 >gi|303241292|ref|ZP_07327797.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] gi|302591131|gb|EFL60874.1| response regulator receiver modulated diguanylate cyclase [Acetivibrio cellulolyticus CD2] Length = 310 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I++D E KL D++ ++ Y + NG++ ++ R+ KPD++I+D+ + + G Sbjct: 4 KKILIIDDTEFMTKLITDILSSADYDVVIASNGLQGIQKVREEKPDLVILDVVMPGMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K +++D +P+I +TA + D+ + G + YI KP + + ++ + Sbjct: 64 EVCKILRDDESNNLMPIIMLTAQDNEDDKLAGLEIGADDYIIKPFNGRELVSRVRNTLKR 123 >gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 232 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D+ L +E GY +G +E + P ++I+DI + GLE+ Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ +PVI +TA D + G + YISKP + + IK + A Sbjct: 67 LRDLR---PHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRA 122 >gi|152970359|ref|YP_001335468.1| putative transcriptional regulatory protein, C-terminal [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206578894|ref|YP_002238379.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288935358|ref|YP_003439417.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290509408|ref|ZP_06548779.1| two-component system, OmpR family, response regulator [Klebsiella sp. 1_1_55] gi|150955208|gb|ABR77238.1| putative transcriptional regulatory protein, C-terminal [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206567952|gb|ACI09728.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288890067|gb|ADC58385.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289778802|gb|EFD86799.1| two-component system, OmpR family, response regulator [Klebsiella sp. 1_1_55] Length = 246 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L D +E SGY A NG + + H+ D+I++DI + GL Sbjct: 6 HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + Q+IPV+ +TA D + G + Y+ KP + IK + Sbjct: 66 LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123 >gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR Length = 214 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + + + Y +G + L+ A H D+II+D+ L I+G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ Q P+I +TA + D+ G + YI KP + + I+ + Sbjct: 61 LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 235 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ + +G ALE + D++++D+ L +SG Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ KQ++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|119899035|ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72] gi|119671448|emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72] Length = 252 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L D +E G +G E +H+ D+I++D+ L GL Sbjct: 7 HILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDLMLPGEDGLT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ P++ +TA D + G + Y+ KP ++ + A Sbjct: 67 LCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRRA 126 >gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 245 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E A+Q PDV+I D+ + + G Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLPDVVITDVMMPRLDGYG 79 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + K+++ D L PVI +TA M D + G + YI KP + ++ Sbjct: 80 LLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 135 >gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 224 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E + + Y +G + E D+I++D+ L +++G+ Sbjct: 2 RILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLPKLNGIG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ IPV+ +TA D+ G + Y+ KP + + I+ + Sbjct: 62 LCQRIRQSG--CSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRR 118 >gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51] gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IVED+ +L RD +E +G+ + +G+E L + ++ D+II+DI L + G Sbjct: 1 MKRILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LEI K +KED ++IPV+ V+A + D+ + G + YI+KP S + +K +I Sbjct: 61 LEILKSMKED---KDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHI 116 >gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 230 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D++ +KL + G+ + +G EAL ++ D II+DI + + Sbjct: 1 MQKKILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + I++ P++ ++A D+ + G + Y++KP S+ I+ Sbjct: 61 GLDVCRSIRKS---YNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANF 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 3 str. Tulya] gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 228 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|237803508|ref|ZP_04591093.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025490|gb|EGI05546.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 462 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 71/118 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VEDN +N + + ++ G +G+EA+ A K +I+MD +L + G Sbjct: 334 RRILLVEDNPVNRTVVQAMLHNLGCEVEVAVDGVEAVAKAGVGKYALILMDCRLPVMDGY 393 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 394 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 451 >gi|254241493|ref|ZP_04934815.1| hypothetical protein PA2G_02189 [Pseudomonas aeruginosa 2192] gi|126194871|gb|EAZ58934.1| hypothetical protein PA2G_02189 [Pseudomonas aeruginosa 2192] Length = 786 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 63/116 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL++ + D+++MD + + G E Sbjct: 664 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKMLEERPIDLVLMDCNMPVMDGYE 723 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 724 ATRQIRDSGRWGGLPIIALTANALPDERERCRAAGMDDYLAKPFHRDELKAILDRW 779 >gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 234 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ + R + +GY + +G EAL+L + +PD+ I+D+ + + GL+ Sbjct: 5 KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGLD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++P++ +TA + G + Y+ KP +L + + A Sbjct: 65 VCRELRSHGD--DLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRA 122 >gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli Kim 5] Length = 218 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +E +G + R G EA+ R+ D+II+DI + ++ Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLTSTAVRTGTEAMAAFRRGNIDLIILDIGMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI++ +P++ ++A + D + G + Y++KP S + +K + Sbjct: 61 GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|167765313|ref|ZP_02437426.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183] gi|167696941|gb|EDS13520.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183] Length = 1354 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ + + L+ NG EALE + H+ D+II D+ + + G++ Sbjct: 1105 TILIVEDNQEIRHYLSSGLAAL-FNILEAGNGEEALEKLKNHEADIIITDVMMPVMDGIK 1163 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K IK++ IPVI ++A D+ + G + YISKP S+++ I+ + Sbjct: 1164 LCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFSIAVLTSKIQNMMR 1221 >gi|260172987|ref|ZP_05759399.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|315921265|ref|ZP_07917505.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695140|gb|EFS31975.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1342 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+DNE R +E Y NG EA E+ ++ PD++I D+ + ++ G E+ Sbjct: 1096 LIVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEELPDLVISDVMMPQMDGNELC 1154 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK+D IPVI +TA + + G + Y++KP +++I + I+K I Sbjct: 1155 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLI 1209 >gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IV+D+ +L +E G+ + +G++AL + K D+ I+DI + + Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVDMAILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|329889206|ref|ZP_08267549.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328844507|gb|EGF94071.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 125 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 85/122 (69%), Positives = 108/122 (88%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+++ GY LQTR G++AL +AR+H+PD+I+MDIQL EIS Sbjct: 1 MSKKVLIVEDNELNMKLFHDLLDSQGYEVLQTREGLQALAIAREHRPDLILMDIQLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ET+++++ Sbjct: 61 GLEVTKWLKDDEELNHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVISFLETVRRHL 120 Query: 121 GE 122 G+ Sbjct: 121 GQ 122 >gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 221 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ D+II+D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI+KP S+S+ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|309790587|ref|ZP_07685142.1| response regulator receiver modulated metal dependent phosphohydrolase [Oscillochloris trichoides DG6] gi|308227389|gb|EFO81062.1| response regulator receiver modulated metal dependent phosphohydrolase [Oscillochloris trichoides DG6] Length = 332 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ + +++ Y + NG+EAL+ PD+I++D+ + + Sbjct: 1 MSAKILVVDDDPAIRDILVRILQRENYTPITATNGLEALDKVVHESPDLILLDVTMPILD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K++ IPV +T + R + G + +++KPI S+ ++ + Sbjct: 61 GFEVCRRLKDNERTALIPVTMLTGLDDREHRRRGVEVGADDFLTKPIEQSLLRARLRSQL 120 Query: 121 G 121 Sbjct: 121 R 121 >gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] Length = 233 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++++VED+ +L + + + T +G EAL LA+++ PD++++D ++ + Sbjct: 1 MARARMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ + +P+I +TA + D R + G + Y++KP S + + Sbjct: 61 SGIEVCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 224 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++V+D + + R E GY + +GMEA+E+ R+ D+II+D+ + E+ G Sbjct: 1 MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ +EIPVI ++A + D+ + G + Y+ KP S M +K I Sbjct: 61 FSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 231 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED +L + G+ + +G EA+ L H+ D+ ++D+ + + G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++E +PVI +TA + + D G + Y+SKP S + I+ + Sbjct: 61 FDFVKKLRE---TSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. 83/13] gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M28] gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M5-90] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 254 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ L +E G+ + +G++ LA Q PD++++D+ L ++ GL + Sbjct: 5 ILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKGQALALQFTPDLVLLDLMLPKVDGLTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA A D+ G + Y++KP L +K + Sbjct: 65 CQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALLRR 122 >gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 234 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K++IV+D + L + GYI L+ NG+EALEL + + +II+DI + ++ Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E +I+E+ + +P+I ++A + D+ G + YI+KP + + +K Sbjct: 61 DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] Length = 239 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + L + +GY +G +ALE+AR+ +P +I++D+ L +SG + Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ D +E+ V+ +TA + D R G + Y++KP S + + + + Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRR 128 >gi|212703362|ref|ZP_03311490.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098] gi|212673208|gb|EEB33691.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098] Length = 234 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNE + +E GY RNG LE+A + D++++DI L + G+ + Sbjct: 6 VLLVEDNEDILANLYAYLEPLGYELDCARNGRTGLEMAASGQFDLVVLDIMLPGLDGISL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++E+ +Q +PVI +TA D G + Y+ KP +L I+ + Sbjct: 66 CRALREEHGVQ-VPVIMLTARDTVADRVLGLDAGADDYLVKPFALRELEARIRALLRR 122 >gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 235 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED+ +L + + G+ +G+ A+ ++ +PD+II+D L + GLE+ Sbjct: 3 ILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQPDLIILDWMLPGLDGLEL 62 Query: 65 TKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + ++ ++ +TA + D G + Y++KP S + ++ + Sbjct: 63 CARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALLRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+E + + Y+ +G EA EL D+I++D+ L ++ G+ Sbjct: 2 KILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S + P++ +TA D G + Y+ KP +L ++ + Sbjct: 62 LCRKLR--SGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRR 118 >gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ GY +G +LA D++I+D L E SGL+ Sbjct: 2 RILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + +++ +++PV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 62 LCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRS 119 >gi|299135154|ref|ZP_07028345.1| response regulator receiver protein [Afipia sp. 1NLS2] gi|298590131|gb|EFI50335.1| response regulator receiver protein [Afipia sp. 1NLS2] Length = 121 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 82/121 (67%), Positives = 105/121 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY + T NG EAL LAR+H+PD+I+MDIQL E+S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTVGTSNGREALRLAREHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ IK+D+EL+ PV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET+++++ Sbjct: 61 GLEVTRWIKDDAELRATPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] Length = 226 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL D + GY L+ +G EAL++ +Q ++++DI + I+G Sbjct: 5 KILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQKDIALLVLDIMMPRINGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ ++P+I +TA + DE G + YISKP S I + + + Sbjct: 65 EVCREIRQ---TSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRR 121 Query: 123 A 123 A Sbjct: 122 A 122 >gi|257059714|ref|YP_003137602.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8802] gi|256589880|gb|ACV00767.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8802] Length = 379 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ L + + SGY + NG + L A++ PD+II D + ++G Sbjct: 1 MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ Q+K EL I +T+ D + G + ++ KPI ++ + ++ + Sbjct: 61 LEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGLR 120 >gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 236 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ ++L + +G+ +G AL AR H+PD++++D+ L ++ G Sbjct: 11 ARLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++E PV+ +TA D+ R G + Y++KP SL I+ + Sbjct: 71 EVIRMMRE--GGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 128 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +MIVED++ +L R + GY +Q +G +AL L + KPD+I++D+++ + GL Sbjct: 4 ATIMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGMDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ +P++ V+ + + + G + YI+KP + I+ + Sbjct: 64 EVCRRIR---LKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRR 120 >gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|302339427|ref|YP_003804633.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301636612|gb|ADK82039.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 515 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 68/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D +N L ++ GY+ + NG +ALE Q PD+I++D+ + +++G Sbjct: 9 HVLVVDDEAINRLLLVTALKKRGYLPEEAANGKDALEKVEQKPPDLILLDVMMPDLTGFG 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +KE E +IPVI VTA + D E K G + +ISKP++++ M ++ + Sbjct: 69 VCRSLKERKETADIPVILVTALHSREDIEEGIKAGADEFISKPVNINELMVRVRTLL 125 >gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] Length = 231 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 70/124 (56%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+K+ ++I++D++ ++L + GY + +G EAL + H+ D++I+DI + + Sbjct: 1 MMKRNILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIMMPKR 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GLE+ +Q++E++ +P++ ++A A D+ G + Y+ KP + + +K Sbjct: 61 NGLEVCQQVREEN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 243 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 K +++VED ++ GY +G ALE LAR+ PD I++D+ L +ISG Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K ++E +++PVI VTA + D + G + Y+ KP S+ M I+ + Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130 Query: 122 E 122 Sbjct: 131 R 131 >gi|298490278|ref|YP_003720455.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298232196|gb|ADI63332.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 374 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D N+ L R L+E+ GY +G AL+ Q PD+I++D+ + + G E Sbjct: 11 RILAVDDTRDNLILVRTLLESEGYKIDLVSDGATALQKVAQSPPDLILLDVMMPGMDGYE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ +L IP++ +TAF + G + +I KP + ++ + Sbjct: 71 VTRRIRNCPDLNYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLR 127 >gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19] gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 6 str. 870] gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 2 str. 86/8/59] gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 5 str. 513] gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 3 str. 686] gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M163/99/10] gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis B2/94] gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M644/93/1] gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M13/05/1] gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 4 str. 292] gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M292/94/1] gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. Rev.1] gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella neotomae 5K33] gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 3 str. Ether] gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 9 str. C68] gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19] gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161] gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99] gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|209884910|ref|YP_002288767.1| cell division response regulator DivK [Oligotropha carboxidovorans OM5] gi|209873106|gb|ACI92902.1| cell division response regulator DivK [Oligotropha carboxidovorans OM5] Length = 121 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 81/121 (66%), Positives = 105/121 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY + T NG EAL LAR+H+PD+I+MDIQL E+S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTVGTSNGREALRLAREHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ IK+D+EL+ P++AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET+++++ Sbjct: 61 GLEVTRWIKDDAELRATPIVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 237 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+ +L + + +G EAL+L +P+++++D+ L I G Sbjct: 5 QRILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ S+ +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCRELRASSQ---VPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|300866717|ref|ZP_07111401.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300335317|emb|CBN56561.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 401 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN+ N+ + DL++ SG+ L NG A++ + P +I++D+ + I G E Sbjct: 11 ILIVDDNQNNLDVLFDLLKKSGFKVLVALNGESAIKQIERIHPTLILLDVMMPGIDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + Q+IPVI +TA + ++ + + G YI+KP + + ++ Sbjct: 71 CRRLKTNPTTQDIPVIFMTALSETVNKVQGFQVGAVDYITKPFQYEEVLSRLNTHL 126 >gi|262282112|ref|ZP_06059881.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] gi|262262566|gb|EEY81263.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ ED ++ +E GY NG EAL LA Q+ +VII+DI + ++ Sbjct: 1 MM-RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE K+I+ VI +TA A D G + Y++KP SL + ++ Sbjct: 60 GLEALKEIRATGNTTH--VIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMA 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|71905989|ref|YP_283576.1| PAS [Dechloromonas aromatica RCB] gi|71845610|gb|AAZ45106.1| PAS protein [Dechloromonas aromatica RCB] Length = 513 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K KV+ V+DN N+ + + ++ G+ + NG EA+ PD++++DI + + Sbjct: 5 MNKMKVLAVDDNRTNLHILQVFLKKLGHEVVLAENGEEAVRRFETDAPDLVLLDIMMPVM 64 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G E ++IK + + PVI ++A + G + Y++KPI+ + ++ Sbjct: 65 DGFEAARRIKAMTRDRWTPVIFLSALNRDENLVEGLDAGADDYLTKPINFVVLEAKLRS 123 >gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32] Length = 1516 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V+IV+D+ N+ ++E G L +G + +E H D+I+MD+ + E+ G Sbjct: 1396 RTVLIVDDDPRNVYALTGILELHGMHVLHAEDGRKGVETVASHPGIDLILMDVMMPEMDG 1455 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ E IP++AVTA AM GD E+ G Y++KP+ + IK+++ Sbjct: 1456 YTATAKIRAMPEHAGIPIVAVTAKAMPGDREKSLASGATDYVTKPVDADDLIARIKRHV 1514 Score = 36.6 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 26/138 (18%) Query: 3 KKVMIVE----------------DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK 46 +++++VE D + + + + + EA Sbjct: 1232 RRLLVVEERQHGLLTLVAESAAADLADSRDI---GLSPADVEVVTAVGTQEAAAALATDA 1288 Query: 47 PDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE----AY 102 +++D+ L E + ++ DS L+ +PV+A + + G+ E++ + + Sbjct: 1289 YHCVVLDLDLPERTAFTFLDAMQGDSALRLVPVLAHNSRRLDGELEQLVQSRADVPSLEV 1348 Query: 103 ISKPISLSIFMETIKKYI 120 +S L E I ++ Sbjct: 1349 LS---GLDELRERIALHL 1363 >gi|87120074|ref|ZP_01075970.1| DNA-binding response regulator [Marinomonas sp. MED121] gi|86164776|gb|EAQ66045.1| DNA-binding response regulator [Marinomonas sp. MED121] Length = 244 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D +L + + GY NG AL + PD+I++DI + E+ Sbjct: 17 MSETILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAALLALEERVPDLILLDIMMPEMD 76 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +++ ++PVI VTA +GD + + G + Y+ KP LS + IK + Sbjct: 77 GYGFIHTMRQ---THDLPVIMVTAKQHEGDLIKGFELGADDYLIKPFKLSELLVRIKAVL 133 Query: 121 GE 122 Sbjct: 134 RR 135 >gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 223 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EALEL Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ NG + +LA+ D++++DI + +++G Sbjct: 1 MAKILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ +Q ++ + PVI +TA D + G + Y+ KP S I + Sbjct: 61 LDLCRQYRQLYGY-DSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU] gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900] gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter baumannii ATCC 17978] gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2] gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +M+VED L RD +E +G+ +G +A +Q KP+++I+D+ + + G Sbjct: 1 MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + +L + +GY +++ N +AL + PD+II+DI + + G Sbjct: 1 MNKILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLKG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + +K + IPVI ++A + + D + G + YI+KP S+ + + IK + Sbjct: 61 TQLLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILLR 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+M+ +D+ + + ++ GY ++ +G +A++ R+ PD++I+DIQ+ ++ G E Sbjct: 2 KIMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRWRESLPDLVILDIQMPKLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ ++ V+ +TA + DE R + G + Y+ KP S + IK + A Sbjct: 62 VCRQMRNETNS---MVLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRRA 118 >gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] Length = 222 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY + NG EAL+L +H+P +I+ DI + E+ Sbjct: 1 MPLTLLVVDDDLGTRLSISDYLEMSGYFVISATNGQEALQLVEKHQPHLIVTDIAMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+++ + +PVI +TA + R + GC+ Y+ KP L I+ + Sbjct: 61 GFELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLL 120 Query: 121 GEA 123 + Sbjct: 121 ERS 123 >gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 236 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D + +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + +D E GY + NG EA+E + D+I++DI + I Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQICQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W] gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W] gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 237 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ +G AL+L Q+ ++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 1897 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++V+D+ N+ L+E G L G+EA+E +++MDI + E+ G Sbjct: 1778 RKVLLVDDDARNIFALSSLLERRGMNVLTATTGLEAIETLNSTDVSIVLMDIMMPEMDGY 1837 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + Q +P+IA+TA AMKGD E+ + G Y++KP+ + ++ ++ Sbjct: 1838 QTMQRIRGSDKHQRLPIIALTAKAMKGDREKCLEAGASDYLAKPVDTEQLLSALRMWLHR 1897 Score = 99.0 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ K+ D +G+ + G++AL LA + P I +DI L +I G + Sbjct: 1513 LIVEDDPRYAKILIDAARKTGFKGIVCHRGVDALSLATDYNPTAISLDIHLPDILGWSVL 1572 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 Q+K + + IPV VT + D G +Y++KP+ +++ Sbjct: 1573 SQLKHNPLTRHIPVQVVT---LDDDRHHGLARGAFSYLTKPLETDALKSALRRI 1623 Score = 97.9 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IV+D+ +L++ +G +AL+ +++ D +++D++L ++SG Sbjct: 1632 KRLLIVDDDSAERMSIAELLKNDDVEIFTAADGADALKKLKENPIDCVVLDLKLPDMSGF 1691 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 EI +Q+ +++IPV+ T + +E+ + + K + S ++ Sbjct: 1692 EILEQMCGSPAMRDIPVVVFTGRELSNEEDHKIRQLARTVVVKGVESPERLLD 1744 >gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 234 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D E + + R +E GY + +G +AL+L ++ P +I++DI + G Sbjct: 1 MYTILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIMMPIQDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +Q++ ++ P+I +TA + D G + Y+ KP S + + + Sbjct: 61 WHVAEQVR---VSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I ED+ L R +E G+ L+ +G AL LAR+H PD+ I+DI + ++ Sbjct: 1 MNPLILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T+ +++ EIP++ ++A + D+ G + YI+KP + + +K + Sbjct: 61 GFELTRALRK---YSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|78356985|ref|YP_388434.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219390|gb|ABB38739.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 363 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 5/124 (4%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQL 56 M+K+ ++IV+DN +N+ + + ++E + NG EALELA KPD+I++D+ + Sbjct: 1 MMKRTNRILIVDDNHVNILILKQILEQE-HQVFAAVNGYEALELASGPMKPDIILLDVLM 59 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G E+ +++KE+ E ++IPV+ VT + DE G YI KP+ SI + + Sbjct: 60 PEMDGYEVCRRLKENDETRDIPVLFVTTQGEEEDEAAGLALGAVDYIVKPVRPSIVLARV 119 Query: 117 KKYI 120 + ++ Sbjct: 120 RNHL 123 >gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 253 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D ++ ++ SGY + +G +ALEL PD++++D+ L ++ G Sbjct: 11 ATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLPKLDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A ++ G + Y+ KP S I + Sbjct: 71 AVCRRLRAESC---VPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRR 127 >gi|330973454|gb|EGH73520.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 645 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ AR +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVMKARAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634 >gi|300868139|ref|ZP_07112773.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300333874|emb|CBN57953.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 626 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ N+ + D +E G+ +G AL+ + PD+I++DI + + G E Sbjct: 11 VLVVDDHASNLAVLSDYLEQVGFEVWVASDGESALQAVQYEAPDIILLDIMMPCLDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + ++IP+I ++A + D+ + G YI+KP + ++ ++ Sbjct: 71 CRRLKANPRTKDIPLIFMSALSETVDKVKGLSLGAVDYITKPFQHEEVLVRLRLHL 126 >gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e] gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL R2-561] gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL J2-003] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator, hybrid [Microscilla marina ATCC 23134] Length = 1338 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 V++VEDN + R + + Y ++ +G+E +E A PD+II D+ + + G Sbjct: 1087 SHTVLVVEDNHELRQFIRTELAVT-YQVIEAADGVEGIEKASNQLPDLIISDLMMPKADG 1145 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ + + IP+I ++A A + + G + Y++KP S + IK + Sbjct: 1146 LELLRTLRNNPQTCHIPIIILSAKASFESKITGLETGGDDYLTKPFSPRELVLRIKNTLE 1205 Query: 122 E 122 Sbjct: 1206 R 1206 >gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQL 56 ++++VED EL ++ +E G+ + +G A+E + +P D+II+D+ L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 I+GL+I + ++ +P++ ++A + D + G + Y++KP S+ + Sbjct: 80 PHINGLDICRLLRHQGN--PVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92] gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92] Length = 230 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+I ED+ DL+E GY LQ NG EA L H+PD++++DI + + G Sbjct: 2 KVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIMMPGMDGYA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ +E ++PVI +TA + + D+ + G + YI KP + I I Sbjct: 62 VCRKIRQLNE--QVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRR 118 >gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 224 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I ED+ L + +E G+ L+ NG AL+LAR PD+ I+DI + +++ Sbjct: 1 MNPLILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T+ +++ +IP++ ++A + D+ G + YI+KP + + +K + Sbjct: 61 GFELTRALRK---FSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|255028239|ref|ZP_05300190.1| hypothetical protein LmonL_01479 [Listeria monocytogenes LO28] Length = 202 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|239833775|ref|ZP_04682103.1| two component response regulator [Ochrobactrum intermedium LMG 3301] gi|239821838|gb|EEQ93407.1| two component response regulator [Ochrobactrum intermedium LMG 3301] Length = 314 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V+IV+D++ L + ++ G +G E ++ + D+II+D+ L SG+ Sbjct: 81 AHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGI 140 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + I+ S +P+I +TA A D+ + G + Y++KP + I+ + Sbjct: 141 EICQDIRRHSR---VPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRR 197 >gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland 1988] gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S] gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 221 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ D+II+D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550] gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 223 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++++D+ + L +D +E GY + NG EAL + + PD+II D+ + E+ G Sbjct: 23 KKLLLIDDDPNLILLVKDYLEFRGYQVVTAGNGREALTMLPELSPDMIICDVMMPEMDGY 82 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI++D IP++ ++A D + G + Y+ KP + ++ + + Sbjct: 83 AFVEQIRQDPSKSWIPILFLSAKGQSQDRVKGLTTGADVYMVKPFEPEELVAQVESSLKQ 142 Query: 123 A 123 A Sbjct: 143 A 143 >gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 235 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + + GY A G EA EL + + D++++D+ L ISG Sbjct: 1 MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ EL+ +P+I VTA + + D + G + Y++KP S + I + Sbjct: 61 TTLCRRM---HELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|182678197|ref|YP_001832343.1| response regulator receiver protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634080|gb|ACB94854.1| response regulator receiver protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 123 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 82/122 (67%), Positives = 107/122 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVEDNELNMKLF DL+E GY +QTRNG+EA++LAR HKPD+I+MDIQL E+S Sbjct: 1 MQKKILIVEDNELNMKLFNDLLEAHGYKTVQTRNGVEAVQLARDHKPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ +KED +L+ IPVIA+TAFAMKGDEE+IR+GGCEAY+SKPIS+ F+ET++ Y+ Sbjct: 61 GLQVTQWLKEDDDLRHIPVIAITAFAMKGDEEKIRQGGCEAYLSKPISVVKFLETVRNYL 120 Query: 121 GE 122 E Sbjct: 121 AE 122 >gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 204 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++++D + F +L+ G+ + RNG E +ELAR+ +PD+++ DI + E++G Sbjct: 1 MKRILVIDDEAKLRRQFAELLNLEGFAVSEARNGREGVELARRERPDLVMCDITMPEMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ + +P I +T + + D G + Y+ KP+ + + ++ + Sbjct: 61 HRVLEALRAEPATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPVEPADLIAAVQARLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 219 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D+ + L +D +E GY NG EALE+ + PD+II D+ + E+ G Sbjct: 13 KHLLLVDDDPNLVLLVKDYLEFQGYEVTTAENGKEALEVLTKQIPDMIICDVMMPEMDGY 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++D+ +PV+ ++A D + G + Y+ KP + ++ + + Sbjct: 73 SLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQ 132 Query: 123 A 123 A Sbjct: 133 A 133 >gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC 19977] gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D+ ++ ++ G+ +G +AL R+ +PD++++D+ L ++ Sbjct: 1 MRQRILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + ++ DS +P++ +TA D + G + YI KP + I+ + Sbjct: 61 GIDVCRVLRSDSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676] gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185] gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W] gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W] gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185] gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676] gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R] gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R] Length = 226 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ ++ ++ G+ + +G A+E A + +PD+I++D+ L ++ Sbjct: 1 MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I + I+++S +P+I +TA D + G + Y++KP + I+ + Sbjct: 61 GIDICRLIRQES---SVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905] gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905] Length = 220 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ +L + + T Y +G+E ++ D+I++D+ + ++ Sbjct: 1 MNYNILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVMMPNLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++ S IP+I +TA + D+ + G + YI+KP S + + ++ + Sbjct: 61 GFEVAKMLRNQS---NIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 215 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY + NG EALEL +HKP +I+ DI + E+ Sbjct: 1 MPLTILVVDDDFGTRLSISDYLEISGYTVISAENGQEALELVDKHKPHLIVTDITMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+I+ + +PVI +TA R + GC+ Y+ KP L I+ + Sbjct: 61 GYDLVKRIRSRPAFRLLPVIFLTAHTAIQSRIRGYQLGCDNYLPKPFELDELGVVIRALL 120 Query: 121 GEA 123 + Sbjct: 121 ERS 123 >gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 64 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 242 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ +++DI + ++ G E Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ IP+I VTA + K G + Y++KP I+ + Sbjct: 81 CKKIRS---FSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVLRR 135 >gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + + ++ +G EA++L K +II+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+++S+ +P+I +TA + DE + G + YISKP S I + ++ + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 >gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] Length = 247 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED + + ++ GY G E L LA DV+++D+ L I+G+ Sbjct: 25 KKILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGI 84 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++I+ S+ +P+I +TA D G + YI KP ++ + I+ + Sbjct: 85 EICRRIRTQSQ---VPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 141 Query: 123 A 123 A Sbjct: 142 A 142 >gi|160884659|ref|ZP_02065662.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483] gi|156109694|gb|EDO11439.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483] Length = 1346 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+DNE R +E Y NG EA E+ ++ PD++I D+ + ++ G E+ Sbjct: 1100 LVVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEELPDLVISDVMMPQMDGNELC 1158 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK+D IPVI +TA + + G + Y++KP +++I + I+K I Sbjct: 1159 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLI 1213 >gi|186681390|ref|YP_001864586.1| response regulator receiver modulated metal dependent phosphohydrolase [Nostoc punctiforme PCC 73102] gi|186463842|gb|ACC79643.1| response regulator receiver modulated metal dependent phosphohydrolase [Nostoc punctiforme PCC 73102] Length = 409 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ + L+ GY ++ G + L Q +PD+I++D+ + + G E Sbjct: 96 KVLVVDDHAASRMTAVALLGMEGYEVIEADRGSTVVGLVTQKQPDLILLDVMMPGMDGFE 155 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +K+D + + IPVI +TA + R + G + +++KP +K + + Sbjct: 156 VCQLLKQDEQTRLIPVIFITALNDRRSRIRGIEVGADDFLTKPFDRVELAARVKSLVRQ 214 >gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D ++ +L + G+ + +GMEA+E + ++ D+IIMD+ + E+ G Sbjct: 1 MYKLLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMNQFDLIIMDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ + PV+ ++A + D + G + Y+ KP S M + I Sbjct: 61 FSACREIRK---FTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024] gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024] gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter calcoaceticus PHEA-2] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K VM+VED L RD +E +G+ +G +A +Q KP+++I+D+ + + G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] Length = 1323 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 73/117 (62%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++VEDNE+N ++ L++ +G NG EALE Q + D+++MD+Q+ + G+ Sbjct: 992 KSVLLVEDNEVNQEVALGLLQDTGLRVTVANNGQEALEKIEQARFDLVLMDMQMPVMDGI 1051 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK+I+ D +++P++A+TA AM D ER + G ++SKPI + F +K++ Sbjct: 1052 TATKRIRADKRWKDLPIVAMTANAMTVDIERCTQAGMNDHLSKPIDIDKFYSVLKQF 1108 Score = 98.3 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 4/116 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL + K D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEIQHKKFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG--CEAYISKPISLSIFMETI 116 E+ +++ ++ VTA+ + + + G +A I KP++ S ++ I Sbjct: 912 ELLTRVQSLGLREKTKCFLVTAYGRDINLDG--ENGKLVDALIVKPVNPSNLLDAI 965 >gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 228 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + + ++ G+ + + G EALE+ ++H+PD++++D L E+SGL++ Sbjct: 6 LLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWMLPEMSGLDVC 65 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + +I VTA + D+ + G + YI+KP SL I+ + Sbjct: 66 RELRRMG---SVGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRR 119 >gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 230 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +M+VED +L RD +E +G+ +G +A +Q KP ++I+D+ + + G Sbjct: 4 MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + YI KP S + ++ + Sbjct: 64 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|332828802|gb|EGK01494.1| hypothetical protein HMPREF9455_02327 [Dysgonomonas gadei ATCC BAA-286] Length = 1473 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ + +++E Y L +G E + A + PD I+ DI + E+ G E Sbjct: 1215 TILVVEDDSDLRRFIVNILEPY-YNVLDAADGKEGYDKAVANVPDFIVSDIMMPEMDGTE 1273 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ +E+ IPVI +TA + G + YI+KP S+ I+ I + Sbjct: 1274 LLQKIRSTTEISHIPVILLTAKTDMESKLDSLDYGADDYITKPFSVKYLRARIENIIRQ 1332 >gi|330951694|gb|EGH51954.1| response regulator receiver:ATP-binding region [Pseudomonas syringae Cit 7] Length = 645 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634 >gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] Length = 230 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ + +G AL +H D++++D+ L +SG Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRA---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 229 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ +L + + T Y +G+E ++ D+I++D+ + ++ Sbjct: 1 MNYNILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPNLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++ S IP+I +TA + D+ + G + YI+KP S + + ++ + Sbjct: 61 GFEVAKMLRNHS---NIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1131 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +DN + L+ + Y NG ALE+A + PD+++ D+ + E+ G E+ Sbjct: 653 LLADDNRDMREYIERLLGSR-YRIRAASNGKRALEMATEDPPDLVLTDVMMPEMDGFELL 711 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +S IP+I ++A A + + + G + Y+ KP S + ++ + Sbjct: 712 AALRANSATSTIPIIVLSARAGEEAQIEGLQHGADDYLVKPFSARELVARVENNLR 767 >gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 2384 Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++E + NG +E L + D ++MDI + E+ G Sbjct: 2252 KKVLVVDDDVRNIFALTSVLEQHHLQVVHAENGRAGIETLLKTPDVDGVLMDIMMPEMDG 2311 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +E + +P+IAVTA AMKGD + + G YI+KP+ L ++ ++ Sbjct: 2312 YETTRAIRQIAEFRTLPIIAVTAKAMKGDRAKCIEAGASDYITKPVDLDQLFSVLRVWLI 2371 Query: 122 EA 123 + Sbjct: 2372 RS 2373 Score = 94.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 6/120 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ D+ G AL G AL LAR+ P I +DI L ++ G I Sbjct: 1987 LIIEDDVTFARILMDMAHDRGIRALVALRGGTALSLAREFNPGAITLDINLPDMVGWTIL 2046 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYIGE 122 ++K D + IPV +T + R G +Y+ K ++ +TI + + Sbjct: 2047 DRLKHDPATRHIPVHVITG---DENRRRGLGLGAVSYLEKSVTKETLNSAFDTIHRSLER 2103 >gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL+ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +M+V+D+ +L + G+ ++ +G EAL+ ++I+DI + + G Sbjct: 1 MTTIMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E + P++ +TA + + + G + Y+ KP + +K + Sbjct: 61 WELCRKLREHYDF---PLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|156742258|ref|YP_001432387.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] gi|156233586|gb|ABU58369.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] Length = 263 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +M+V+D+ L + + GY + R+G++AL+ +PD++++D+ + +S Sbjct: 4 MSATIMVVDDDPAISTLISHQLRSLGYRTVCLRDGLQALQQMAIIQPDLVLLDVMMPHMS 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I +QI+ SE P+I +TA D G + Y++KP ++ I+ + Sbjct: 64 GWDICRQIRACSEA---PIILLTAKDADADVINGLNAGADDYVTKPYRIAQLHARIEAAL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185] gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550] gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550] gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185] gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL+ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816] gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes str. Scott A] Length = 225 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ + +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCKKMR--TSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 67/124 (54%), Gaps = 3/124 (2%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K +++IV+D + ++L + GY NG++A+E A+ P +I+MDI + + Sbjct: 1 MKANSRILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEAKDFLPQLILMDIMMPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+E ++I+E +L+E +I +TA + + E + G + +I+KPI + + Sbjct: 61 MDGVESCRKIREIPKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVSA 120 Query: 119 YIGE 122 + Sbjct: 121 FFRR 124 >gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|219849342|ref|YP_002463775.1| response regulator receiver modulated serine phosphatase [Chloroflexus aggregans DSM 9485] gi|219543601|gb|ACL25339.1| response regulator receiver modulated serine phosphatase [Chloroflexus aggregans DSM 9485] Length = 385 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I++D+E N L +E G+ +G + LE A++ DVI++D+ + E+ G Sbjct: 8 RILIIDDSEHNRYLLTRQLERRGHSIATASHGRQGLEYAQREPFDVILLDLMMPEMDGFT 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q+K + + IPVI ++A D R + G E Y++KP + ++ I + Sbjct: 68 VLDQLKRNPQTHHIPVIVISAINEIDDVVRCIEAGAEDYLTKPFNQTLLYAKINACLER 126 >gi|332667187|ref|YP_004449975.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336001|gb|AEE53102.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1381 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN R + Y ++ NG E LE R+ PD+II D+ + E+ G E+ Sbjct: 1122 VLVVEDNADIRTYIRRSLYPD-YEVIEAENGQEGLEKTRKLIPDIIISDVIMPELDGFEL 1180 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K++ IPVI ++A + + + G + YI+KP S+ + I+ + Sbjct: 1181 CRTVKQEEATAHIPVILLSARSSQMYQVEGYDTGADDYIAKPFSIDLLQARIRNLL 1236 >gi|325273498|ref|ZP_08139736.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324101374|gb|EGB98982.1| integral membrane sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 644 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++VEDN +N + ++ + G +G+EA++L + + ++MD +L + G Sbjct: 516 KKVLLVEDNPVNQSVIEAMLRSLGLAVCTAADGLEAVDLVGRQRFAAVLMDCRLPHMDGY 575 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ +P+IA+TA A+ GD ER G + Y+SKP+ S +++++ Sbjct: 576 EATRRIRQLDNGTGLPIIALTANALDGDRERCMTAGMDDYLSKPLRRSELQRVLQRWL 633 >gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 230 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL+ D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYIDS-SIDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++D + PVI +TA D + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQD---HQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E + +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 865 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 71/121 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++ ED +N ++ + L+E G +G EA+E A + D+I+MD+Q+ + GL Sbjct: 743 KRILLAEDEPINQEIAQVLLEEVGLTVDFAADGQEAVEKATAGRYDLILMDMQMPHLDGL 802 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +QI+ E P++A+TA A D+ R G + +I+KP+S +F +T+ +++ Sbjct: 803 EAARQIRLIPEYAATPILAMTANAFAEDKARCFMAGMDDFIAKPVSPDVFYQTLLRWLDN 862 Query: 123 A 123 + Sbjct: 863 S 863 >gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED +L RD +E SG+ + NG E L LA+ ++ +I++D+ L I G Sbjct: 1 MKRILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++E +IP++ VTA D+ R G + YI KP + + + +K + Sbjct: 61 FQLCREMRE---FLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis 46P47B1] gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis 7169] gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis 103P14B1] gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8] gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1] gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7] gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis CO72] gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis 101P30B1] gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis O35E] Length = 240 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 64/126 (50%), Gaps = 4/126 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQE 58 M K+++++ED+ +L D + + Y G L++ + D +I++D+ L + Sbjct: 1 MNKQILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPD 60 Query: 59 ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+E+ ++++ +++ + ++P++ +TA D + G + YI+KP + I Sbjct: 61 MDGMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120 Query: 117 KKYIGE 122 + + Sbjct: 121 RAVLRR 126 >gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter johnsonii SH046] gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter johnsonii SH046] Length = 236 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D + +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] Length = 233 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G EAL Q+ P++I++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREVRAK---ANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121 >gi|83647950|ref|YP_436385.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635993|gb|ABC31960.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 758 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N L R ++E G NG A++ D+I MD + + G E Sbjct: 634 RVLLVEDNTVNRNLARKMLEKCGCRVDFAENGEIAIQQMGSTHFDLIFMDCWMPVMDGYE 693 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK----K 118 T++I+E + IP++A+TA A G++E+ + G + +++KPI ++ K Sbjct: 694 TTRRIRESGQSFSHIPIVALTANAFPGEKEKCMQCGMDDFLTKPIRFEELSAIVRHFEEK 753 Query: 119 YIGEA 123 + +A Sbjct: 754 VLEQA 758 Score = 53.6 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 14/126 (11%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 ++++ + NEL++K D+ + E L Q + +I+D L Sbjct: 482 RILVADANELSLKATLDIFSEESLLHCDIAKTAEEVKALVNQAVDSKAPYNAMILDESLP 541 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +++ K IK + P++ +++ + ++ G Y+SK ++ + Sbjct: 542 GDEFIDLIKFIKSLDLQKNAPILTLSSHPQREHVSELKGAGVSGYLSK-------LDR-E 593 Query: 118 KYIGEA 123 ++ +A Sbjct: 594 SHLRDA 599 >gi|70731594|ref|YP_261335.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345893|gb|AAY93499.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 773 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 59/112 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + + ++ G +G EAL H+ D+++MD + + G E Sbjct: 652 ILLVEDNPVNQLVAKGMLSKLGCAVTVAAHGAEALNQLELHRFDLVLMDCNMPVMDGYEA 711 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++QI+ ++P+IA+TA AM + ER R G Y++KP + + Sbjct: 712 SRQIRRSGRWPDLPIIALTANAMPEERERCRAAGMSDYLAKPFRREELIALL 763 >gi|66045261|ref|YP_235102.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255968|gb|AAY37064.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae B728a] Length = 645 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ AR +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVMKARAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 634 >gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+ VED+E +L +++SG+ A N E + + + PD+I++DI L I G Sbjct: 1 MQKIYCVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVLKNNVPDLILLDIMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI K+++++ + Q P+I +TA + D+ G + Y++KP + + IK + Sbjct: 61 IEILKEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC 27755] gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC 27755] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D++ ++ + G+ L+ +G+EA+E+ ++ D++IMDI + + G Sbjct: 1 MAKILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESVDLLIMDIMMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E IP+I ++A + D+ G + YI+KP + + +K ++ Sbjct: 61 IRATLKIREK---HNIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 232 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K++IV+D + L + GYI L++ NG+EALEL + + +II+DI + ++ Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E +I+E+ + +P+I ++A + D+ G + YI+KP + + +K Sbjct: 61 DGIEACMKIREE---KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51] gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED + +E +GY + +G +AL L + PD++++D+ L I GLE Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+E + + +I +TA D+ + G + Y+ KP + + IK + Sbjct: 67 VCQHIRE--TMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123 >gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 233 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++++VED+ +L + + T +G EAL LA++ PD++++D ++ + Sbjct: 1 MARARMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++ + +P+I +TA + D R + G + Y++KP S + + Sbjct: 61 SGIEVCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E +L +D +E SG+ +G L A D++I+D+ L + G Sbjct: 1 MSRILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++++E ++ P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICRKVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 223 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|152986976|ref|YP_001347701.1| sensor histidine kinase/response regulator [Pseudomonas aeruginosa PA7] gi|150962134|gb|ABR84159.1| sensor histidine kinase/response regulator [Pseudomonas aeruginosa PA7] Length = 779 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 63/116 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + L+ G +G+ AL+L + D+++MD + + G E Sbjct: 650 RVLLVEDNPVNQLVAKGLLHKLGCQVWIAEHGLNALKLLEEQPIDMVLMDCNMPVMDGYE 709 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+QI++ +P+IA+TA A+ + ER R G + Y++KP + ++ Sbjct: 710 ATRQIRDSGRWGRLPIIALTANALPEERERCRAAGMDDYLAKPFHRDELKAILDRW 765 >gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ R + GY +G EAL PD++++DI + ++ Sbjct: 1 MSLRVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ E P++ +TA D + G + Y+ KP +L + ++ Sbjct: 61 GLEVCRRIRAAGET--FPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALS 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|302526266|ref|ZP_07278608.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302435161|gb|EFL06977.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 266 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+ R + G+ G E L + DV+++D+ L + G Sbjct: 37 MPRVLLIEDDRAVRDGLRLALTYQGHTVDAVETGEEGLARLAEDPADVVVLDLMLPGMDG 96 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA D + G + Y+ KP + I+ + Sbjct: 97 FEVCRRIRAAG---DLPIIMLTARNDDIDVVAGLEAGADDYVVKPAQARVLEARIRAVLR 153 Query: 122 E 122 Sbjct: 154 R 154 >gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1010 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+DN + L+E Y NG ALE H+P++II D+ + E+ G+ Sbjct: 628 ARVLIVDDNADMRDYLQRLLEKQYY-IETAANGKLALEKIATHQPELIISDVMMPEMDGI 686 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +K + + +PVI V+A A + G + Y++KP S ++ I Sbjct: 687 ELLHHVKHNPATESLPVILVSARAGEEATIEGYDIGADDYLTKPFSAKELQARVRAQIR 745 >gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] Length = 258 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 69/120 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED E + L + + G+ + + GMEAL +AR+ PD+I++D+ + E SGL Sbjct: 32 KKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGL 91 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K +K+D + IP++ +TA + D + G + YI+KP S + I+ + Sbjct: 92 DVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRR 151 >gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 855 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 K++IV+D +N+ + + + + Y +Q +G EAL + + PD+I++D+ + ++G Sbjct: 562 KILIVDDEAVNLHVLANHLSLNHYATIQAASGREALSILEEGLIPDLILLDVMMPHMTGY 621 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+T++I+E E E+P++ +TA D + G Y+ KPIS + + IK ++ Sbjct: 622 EVTQKIREHWEANELPIVLLTAKNQVSDLVMGLEVGANDYLIKPISKNELLARIKTHL 679 >gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +KK V+IVED +L + +G+ + +G+ A PDVI++D L Sbjct: 1 MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL + ++ + DS + +P++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED + + GY Q +G E ++ A+ D+II+DI L I+G+ Sbjct: 4 KKILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHINGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I++ IP+I +TA D+ G Y++KP ++ + I+ + Sbjct: 64 EVLRKIRQ---TSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAAL 118 >gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 234 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ + + GY G + L + + D++++D+ L E++G Sbjct: 1 MSKILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+I++ +E +PV+ +TA + D+ G YI+KP + I+ + Sbjct: 61 LEVLKRIRKHNET--VPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALR 118 >gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ +G EALE+ + D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ S+ +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRSLRQRSK---VPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++++ G+ G A+E R +PD+I++D+ L Sbjct: 1 MNARILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+E+S +P++ +TA + D + + G + Y+ KP + ++ + Sbjct: 61 GLEVCREIREESG---VPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis DSM 17361] Length = 1372 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++IVEDN + D + Y ++ NG EA+E +++ D+ + E+ G Sbjct: 1122 SATLLIVEDNTDIRRYLVDALCDQ-YHVVEASNGKEAMEKLDAETISLVLTDVMMPEMDG 1180 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+IK + IPVI ++A ++ G + YI+KP S+SI I+ + Sbjct: 1181 FELCKRIKRHIQTCHIPVIILSAKVETREQLDGLLIGADDYITKPFSISILKAKIRNTLR 1240 >gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 240 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++V+D+ L ++ +G + +G AL ++P+++++DI + + Sbjct: 4 MQSTVLVVDDDPHIRDLLTFALQKAGLATREAADGEAALADIALYRPNLVVLDINMPRMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E ++I+ ++PV+ +++ + D + G + Y++KP S + + + Sbjct: 64 GIEACRRIRAQG---DLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|217978047|ref|YP_002362194.1| adenylate/guanylate cyclase [Methylocella silvestris BL2] gi|217503423|gb|ACK50832.1| adenylate/guanylate cyclase [Methylocella silvestris BL2] Length = 403 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D N+++ +E GY + +G E L AR KPD+I++DI + ++ G+ Sbjct: 22 RILAVDDVAENLEIVVVRLEAHGYEIITASDGEEGLAKARAIKPDLILLDIMMPKLDGIS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K++K D L IPVI +TA A + D G + Y++KP S + ++ + Sbjct: 82 VLKELKRDENLGFIPVILLTAKADRTDLVAGLDAGADDYLTKPFDQSALVARVRSMLR 139 >gi|170078959|ref|YP_001735597.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886628|gb|ACB00342.1| Two-component response regulator; GGDEF domain protein [Synechococcus sp. PCC 7002] Length = 602 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ED + +L L+ Y L+ NG + +A +++PD+II DI + + G Sbjct: 7 SPTILVIEDEDSIRELIVTLLIAEDYQVLEAENGQIGVGIAIENRPDLIICDIMMPGMDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ D E + IP I +TA K + + G + Y++KP + ++ IK + Sbjct: 67 YGVLEILQADPETETIPFIFLTAKGTKENIRQGMNLGADDYLTKPFTTYELLDAIKTRLR 126 Query: 122 E 122 + Sbjct: 127 K 127 >gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ +L + + + TR+G EAL LAR++ PD++++D ++ SG+E Sbjct: 5 RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ E +P+I +TA + D R + G + Y++KP S + + + Sbjct: 65 VCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123 >gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 260 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 36 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 95 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 96 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARL 152 Query: 121 GEA 123 + Sbjct: 153 RRS 155 >gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] Length = 233 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED++ ++ +D + +G+ + +G L +ARQ + D+I++DI L + G Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ +E+PV+ VTA + D R G + YI KP + + + ++ +I Sbjct: 61 FAVCRELR---RYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220909116|ref|YP_002484427.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219865727|gb|ACL46066.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 121 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED+ ++ +L+ SG +G+EA+E +PD++++DI + ++G Sbjct: 1 MSKVLVVEDSVPQREMISELLSNSGLTVAVATDGVEAIEQLHIIQPDIVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QIK D + +PV+ ++ + D +K G +AYI+KP + T+K+ + Sbjct: 61 YEVCRQIKSDPKTSHVPVVICSSKSEDFDRYWGKKQGADAYIAKPFQPKELIGTVKQLLR 120 >gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 225 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+++ED + L +E GY L +G L AR+ KPD+I++D+ L + G Sbjct: 1 MPTVLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLPGMMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K IPVI +TA + D + G + Y+ KP S M ++ + Sbjct: 61 TEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|158320115|ref|YP_001512622.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140314|gb|ABW18626.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I++D + + +E GY + NG + LE + PD+I++D+++ + Sbjct: 1 MNKRILIIDDEKNMRWAIKKALEKEGYNIYEAENGQDGLEKLEEIYPDLILLDLRMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E ++IKE + Q+IPVI +TA K G YISKP + IKK + Sbjct: 61 GMEALQRIKEIN--QDIPVIMLTAHGTMESAVEAMKLGALDYISKPFDIEELKVLIKKAL 118 >gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 227 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED + +L ++ GY + + +G E LE A + +PD+I++D+ L + G ++ Sbjct: 4 ILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTDV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I++ + IPV+ +TA + D+ + G + Y+ KP S M IK + Sbjct: 64 CKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRR 121 >gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1] Length = 1771 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 76/120 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1424 KRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLSQQSYDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T I++ EL +PVIA+TA AM GD+E + G +I+KPI ++I +T+ KY+G+ Sbjct: 1484 QATMAIRQRPELAHLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNILYQTLLKYLGD 1543 Score = 120 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +E+ G+ R G EA+ QH+ V ++D ++ + GLE Sbjct: 1284 VLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVALIDWKMPSMDGLEA 1343 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QI++ ++ ++ V+A A +I + G YISKPIS S ++ I +G A Sbjct: 1344 ARQIQQQAKAAP-RILMVSAHANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRA 1401 >gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++ ++D E + + + +E GY L NG AL + PD++I+D+ L +SG E Sbjct: 2 KILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLMLPGMSGEE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+ L ++P++ +TA + D+ G + Y++KP S +K + Sbjct: 62 ICRKIRA---LSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRR 117 >gi|320355079|ref|YP_004196418.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] gi|320123581|gb|ADW19127.1| response regulator receiver modulated diguanylate cyclase [Desulfobulbus propionicus DSM 2032] Length = 326 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%) Query: 1 MLKK-------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIM 52 M KK ++IV+DN + +KL ++ +GY +Q +G +AL L PD+I++ Sbjct: 4 MKKKEKTTDASILIVDDNPVVIKLLHAMLARAGYQVVQAASGQQALALLASDCLPDLILL 63 Query: 53 DIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 DI + +SGLE + IKE+ +IPVI VTA K G + YI KP + Sbjct: 64 DIDMPGVSGLEACRLIKENPRTADIPVIFVTASNDKEHIVNGFAAGAQDYIIKPSTQEEL 123 Query: 113 METIKKYI 120 + ++ ++ Sbjct: 124 LARVRTHL 131 >gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 234 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M V +V+D + ++L + + GY NG LE + +PD++I+DI L +I Sbjct: 1 MSAYTVYVVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSEPDIVILDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI K+I+++S ++P+I ++A + D+ + G + YISKP SLS IKK Sbjct: 61 DGYEICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|284053870|ref|ZP_06384080.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 286 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN N+ L D I G NG+EA+ A +PD+I++DI + ++ G E Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K++ IPVI +TA D+ + G YI+KP + + ++ Sbjct: 68 TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHL 124 >gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ +L + + + TR+G EAL LAR++ PD++++D ++ SG+E Sbjct: 5 RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ E +P+I +TA + D R + G + Y++KP S + + + Sbjct: 65 VCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123 >gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella copri DSM 18205] gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella copri DSM 18205] Length = 935 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++++DN + R L++ YI L+ +G E L +A + PD++I D+ + + GLE Sbjct: 685 TVLVIDDNTDIRQYERTLLQDE-YIVLEAADGKEGLAVALKEVPDLVICDVMMPVMDGLE 743 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+Q+K ++ IPVI +TA ++ + G ++YI+KP + + I+ + + Sbjct: 744 LTEQLKTNTATSHIPVIMLTAKNLEEHRAEGYEHGADSYITKPFHSKVLLARIENLLRQ 802 >gi|218508381|ref|ZP_03506259.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli Brasil 5] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +E +G R+G EA+ R+ D+II+DI + ++ Sbjct: 1 MAPRILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI++ +P++ ++A + D + G + Y++KP S + +K + Sbjct: 61 GLEVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|218246672|ref|YP_002372043.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8801] gi|218167150|gb|ACK65887.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 8801] Length = 379 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ L + + SGY + NG + L A++ PD+II D + ++G Sbjct: 1 MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ Q+K EL I +T+ D + G + ++ KPI ++ + ++ + Sbjct: 61 LEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGLR 120 >gi|254974102|ref|ZP_05270574.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091501|ref|ZP_05320979.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313229|ref|ZP_05354812.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515919|ref|ZP_05383595.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649013|ref|ZP_05395915.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260682204|ref|YP_003213489.1| two-component response regulator [Clostridium difficile CD196] gi|260685803|ref|YP_003216936.1| two-component response regulator [Clostridium difficile R20291] gi|306519129|ref|ZP_07405476.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260208367|emb|CBA60866.1| two-component response regulator [Clostridium difficile CD196] gi|260211819|emb|CBE02210.1| two-component response regulator [Clostridium difficile R20291] Length = 224 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D E + L +D E +GY ++G ++L+ ++ PD+I++DI + EI Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDSLKKISKN-PDIILLDINMPEID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P++ +TA D+ + G + YI KP L + ++ Sbjct: 60 GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L +D +E GY + NG+E LE R PD+II D+ + E+ G Sbjct: 5 KRLLLIDDDPNLILLVKDYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ +S IPVI ++A D R G + Y+ KP + ++ + Sbjct: 65 TFVQTIRSNSATDWIPVIFLSARGQTADRVRGLNTGADVYLVKPFEPEELVAQVESVL 122 >gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 1149 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G I RNG EA+E QH D+++MD+ + E+ G Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1144 Query: 122 E 122 + Sbjct: 1145 Q 1145 Score = 100 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + E ELA Q+ PD I++D++L + SGL + Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFELAAQYIPDAILLDMRLPDHSGLTV 818 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP S E + Sbjct: 819 LQRLKEQAGTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870 Score = 74.0 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++L + LI +AL L R++ D +I+D++L ++ G Sbjct: 879 KHILLVEDDDLQRESIARLIGDDDVEITAVAFAQDALALLRENIYDCMIIDLKLPDMLGN 938 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T + +EE Sbjct: 939 ELLKRMTAEDIRSFPPVIVYTGRNLTREEEA 969 >gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae NTUH-K2044] gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] Length = 238 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED+E L R ++ GY + +G +AL D +I+D+ L + Sbjct: 1 MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++I++ + +PVI ++A + + G + Y++KP SL + +K Sbjct: 61 GLEICRRIRQM--TRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032] Length = 226 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ ++ ++ G+ + +G A+E A + +PD+I++D+ L ++ Sbjct: 1 MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I + I+++S +P+I +TA D + G + Y++KP + I+ + Sbjct: 61 GIDICRLIRQES---SVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D L ++ +GY +G E + +PD+I++D+ L ++ G+ Sbjct: 4 KKILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLPKMDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ + +P++ +TA D+ G + Y++KP S + I+ Sbjct: 64 QVCRELRRQNNA--VPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRR 121 >gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB056] gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB058] gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB059] gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii AYE] gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +M+VED L RD +E +G+ +G +A +Q KP+++I+D+ + + G Sbjct: 1 MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNFQQRKPNLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 252 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I +D + + + YI + NG+EALE+ Q D++++D+ + + G Sbjct: 17 MAKILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEHIDLVLLDVMMPVMDG 76 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE I++ IP+I +TA D+ G + YI+KP + + +K + Sbjct: 77 LEAMMHIRK---TTTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLR 133 Query: 122 E 122 Sbjct: 134 R 134 >gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199] gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199] Length = 246 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 64/113 (56%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED + L R +E G+ +G EAL +A + KPD+I++D L +S Sbjct: 15 MKPLILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEALLVAAERKPDLILLDWMLPLLS 74 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 G+E+ ++++ + + +P+I +TA +GD R G + Y++KP S S + Sbjct: 75 GIEVCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELI 127 >gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 1155 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G I RNG EA+E QH D+++MD+ + E+ G Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1150 Query: 122 E 122 + Sbjct: 1151 Q 1151 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + E LA Q+ PD I++D++L + SGL + Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFALAAQYIPDAILLDMRLPDHSGLTV 824 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP S E + Sbjct: 825 LQRLKELAATRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876 Score = 58.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++L + LI +AL L R++ D +I+D++L ++ G Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVALAQDALALLRENIYDCMIIDLKLPDMLGN 944 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T + +EE Sbjct: 945 ELLKRMTAEDIRSFPPVIVYTGRNLTREEEA 975 >gi|89902538|ref|YP_525009.1| response regulator receiver domain-containing protein [Rhodoferax ferrireducens T118] gi|89347275|gb|ABD71478.1| response regulator receiver domain protein [Rhodoferax ferrireducens T118] Length = 124 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++ +D + L++ GY L R+G EALE + KPD++++D+ + + + Sbjct: 1 MSQKILVADDEPNIVISLEYLLKREGYTVLIARDGQEALEAIAREKPDLVLLDVMMPKKT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + ++ +LQ I ++ +TA D + G +AYI+KP S + + + + Sbjct: 61 GFEVCQALRASDDLQAIKILMLTAKGRDTDVAKGLALGADAYITKPFSTRELVLKVAELL 120 Query: 121 GEA 123 E+ Sbjct: 121 RES 123 >gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 227 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN + D ++ G+ ++G+ L LA D+I++DI L I G + Sbjct: 2 RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED E+P++ +TA D + G + Y+ KP +LS + I+ + + Sbjct: 62 VCKRLREDGR-SEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120 >gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 225 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 KV++V+D KL RD + G++ ++ +G EA+++ Q +I++D+ + ++ G Sbjct: 5 KVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I++ ++P+I +TA + DE + G + YISKP S I + ++ + Sbjct: 65 EVCRTIRK---YSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium resistens DSM 45100] Length = 230 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E + L++ G+ +G AL+ D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 230 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++++D+ ++ + T G+ +G + + D+ ++D+ + +++ Sbjct: 1 MMHKILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAGQFDLTVLDVMMPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E + I++ IPVI +TA + + + G + Y++KP + + I+ + Sbjct: 61 GIETLRIIRQ---ASHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 222 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY+ + NG EALEL +H+P +I+ DI + E+ Sbjct: 1 MPLTLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+++ + +PVI +TA + R + GC+ Y+ KP L I+ + Sbjct: 61 GFELVKRVRSQPIFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLL 120 Query: 121 GEA 123 + Sbjct: 121 ERS 123 >gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family [Asticcacaulis excentricus CB 48] gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family [Asticcacaulis excentricus CB 48] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I ED + L + +E GY +G EAL + + +PD+++ D + ++SG+E+ Sbjct: 7 IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPKVSGIEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ +E + +P++ +TA + + D R G + Y+ KP S+ + I+ + Sbjct: 67 TRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRR 124 >gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4] gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4] Length = 240 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L + G+ G E L+ AR +PD +I+D+ + + G Sbjct: 13 ARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ D + PV+ +TA D+ G + Y++KP SL + ++ + Sbjct: 73 GLLKRLRADGV--DAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|198274045|ref|ZP_03206577.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135] gi|198273123|gb|EDY97392.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135] Length = 1367 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN D Y NG E L++A + PD+++ DI + ++G+ + Sbjct: 1098 ILVVEDNADIRDYIADSFTDL-YEVKTAANGKEGLQIATECIPDIVVSDIMMPVMNGIMM 1156 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1157 CQKLKADMRTSHIPVILLTAKDSITDKEEGYQAGADSYLTKPFSASLLQSRISNLL 1212 >gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D E + +D +E GY L +G EAL + + +P +II+D+ + E+ G+E Sbjct: 7 TILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL-IQSKRQPSLIILDVMMPEMDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + KQ++E + P++ ++A + D + G + Y+ KP SL+ I ++ Sbjct: 66 VCKQLRE---TTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRR 121 >gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 1156 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G I RNG EALE + D+++MD+ + E+ G Sbjct: 1032 RKILLVDDDVRNIFALTSALEHKGAIVEIGRNGREALECLEANDDIDLVLMDVMMPEMDG 1091 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1092 YEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1151 Query: 122 E 122 + Sbjct: 1152 Q 1152 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + E ELA Q+ PD I++D++L + SGL + Sbjct: 766 ILVIEDEPNFARILYDLAHELGYSCLVAQAADEGFELAAQYMPDAILLDMRLPDHSGLTV 825 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP S + Sbjct: 826 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKAVFARL 877 Score = 74.0 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++L LI +AL L R++ D +I+D++L ++ G Sbjct: 886 KHILLVEDDDLQRDSIARLIGDDDIEITAVAMAQDALALLRENIYDCMIIDLKLPDMLGN 945 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T + +EE Sbjct: 946 ELLKRMTAEDIRSFPPVIVYTGRNLTREEEA 976 >gi|325298638|ref|YP_004258555.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324318191|gb|ADY36082.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1353 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN+ + + Y NG E +E+A + PD+I+ DI + + G+ + Sbjct: 1092 ILIVEDNKDILDYIAESFTDL-YEVKTALNGKEGMEIALECIPDIIVSDIMMPVMDGITL 1150 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQ+K D IP+I +TA D+E + G ++Y++KP S S+ I + + Sbjct: 1151 CKQLKNDIRTSHIPIILLTAKDTLSDKEEGYQSGADSYLTKPFSASLLHSRINNLLAQ 1208 >gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 232 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED+ +KL + Y + +G L +A ++ D+I++D+ L + G Sbjct: 1 MKQILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSYDLILLDLTLPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI K+I+ + P+I +TA + + D + G + YI+KP S+ + +K + Sbjct: 61 IEICKKIRSQ---KNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 233 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D +KL + +E GY L R+G+EALE + + DV+++D+ + + G+E Sbjct: 5 TILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVMMPNMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E + P+I ++A D+ G + Y++KP S + IK + Sbjct: 65 ACMKIRE---TEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRR 120 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I+ED + + + E GY T +G+ L+ A + D++++DI L I Sbjct: 1 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I+E S +IPVI +TA D+ G + Y++KP S+ ++ + Sbjct: 61 GFEVLKKIREHS---DIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAAL 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella tarda ATCC 23685] gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella tarda ATCC 23685] Length = 996 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 ++++VEDN+ N ++ R+L+E G I +G EA++ + D+++MD+Q+ + G Sbjct: 635 RILVVEDNQNNQQIARELLEDEGAIVTLAAHGQEAIDRLKATPQGFDLVLMDLQMPVMDG 694 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ I+ L +P+IA+TA AM D + G +I KP +L ++TI+K++ Sbjct: 695 INATQYIRSHLTLHTLPIIAMTANAMVSDRQACLAAGMNDHIGKPFNLRELIQTIQKHL 753 Score = 96.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 14/130 (10%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 V++V+DN L + + T G+ G +AL L Q DV+ +D + Sbjct: 485 HVLMVDDNPTARSLLQQMALTLGWRVDCAAEGEQALTLIAQQQQAGDPYDVLFIDWLMPG 544 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMK-----GDEERIRKGGCEAYISKPISLSIF 112 + G + ++++ +++P ++ VTA + EE+ + ++ KP++ + Sbjct: 545 LDGWQTIQRLRSRLHEKQLPLLVMVTANDRECLLQRSSEEQGIL---DGFLLKPVTPLML 601 Query: 113 METIKKYIGE 122 ++++ + E Sbjct: 602 LDSVAGALRE 611 >gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VED+E +L + G+ + NG + L LA D++++DI L +IS Sbjct: 1 MQNRVLLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHCDLVVLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++ + +PV+ +TA + D + G + YI KP + + ++ + Sbjct: 61 GLEVLRQLRAKT---HLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 2/125 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++ +VED E L R +E GY G EA R+ PD++I+D L Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ +++++ E +P+I +TA + + R G + Y+ KP S + +K Sbjct: 61 VSGIELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120 Query: 119 YIGEA 123 + A Sbjct: 121 MLRRA 125 >gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 238 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ + D++E GY L ++G EAL ++ + D+ ++DI + +G + Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + +I +TA + D+ + G + YI+KP + I + + Sbjct: 65 VCRELRRRD--PALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRS 122 >gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides fragilis 3_1_12] gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 224 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ +G EL RQ D++I+DI + ++G Sbjct: 1 MAKILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + + +PVI +TA D + G + Y+ KP S IK + Sbjct: 61 LELCRLYRRQYGYL-VPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAILR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 239 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+M+++D ++L +E GY + + +ALE + D+ ++DI L I G Sbjct: 4 RKIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ + + PVI ++A + D+ + G + YI+KP S+ + IK Sbjct: 64 EFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123 >gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8] gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8] Length = 237 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + +++ +E GY +G EALE A K D+I++DI L + G E+ Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA-SGKIDLIVLDIMLPGVDGYEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++++ E +EIP++ ++A + D+ G + Y++KP+S + + +K + + Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRS 129 >gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittEE] gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3047] gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC 11116] gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittEE] gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae 10810] gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus influenzae R2846] gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3047] gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC 11116] Length = 231 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED ++ + Y ++ + A+ +++ P +I++D L S Sbjct: 1 MTRKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ + IK+ IP+I +TA + + D G + YI+KP S I + I+ Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 900 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ ED +N L R L+ +GY NG +A++ R D I+MDIQ+ E+ G Sbjct: 758 QRILVAEDEYINKILIRTLLRQAGYQVTVVENGRKAVDAWRGGLFDCILMDIQMPEMDGY 817 Query: 63 EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +I+E + + Q IP+IA+TA AM D ++ G + Y+SKPI S ++ I+KY+ Sbjct: 818 EAVARIREAEGDNQHIPIIAMTAHAMPSDRQKCLSSGMDDYVSKPIDGSSVLKIIEKYL 876 >gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family [Planctomyces brasiliensis DSM 5305] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED + ++ G+ + +G + L A+ PD+I++D+ L GLE+ Sbjct: 6 ILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVTDGLEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ D + I ++ +TA + + DE G + Y++KP + + +K + Sbjct: 66 CRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLRR 123 >gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 219 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + ++ + Y +G + L+ A H D+II+D+ L I+G Sbjct: 1 MTQILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ Q P+I +TA + D+ G + YI KP + + I+ + Sbjct: 61 LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 221 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDN +L R+ + Y G E + L +++ D++++D+ L +I G Sbjct: 1 MTHILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K I+ S ++P+I +T + +E + + G + YI+KP +IF++ ++ + Sbjct: 61 YSICKIIRGQS---DVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L++A Q ++II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 229 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|325270713|ref|ZP_08137308.1| DNA-binding response regulator/sensor histidine kinase [Prevotella multiformis DSM 16608] gi|324986959|gb|EGC18947.1| DNA-binding response regulator/sensor histidine kinase [Prevotella multiformis DSM 16608] Length = 954 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN L Y NG E +E+A PD+II D+ + + GLE Sbjct: 705 RLLVIEDNRDIAAYIGSLFADR-YDVSYASNGKEGMEMALDLMPDLIITDLMMPGMDGLE 763 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + IP+I VTA + + R + G +AYI KP + ++K + Sbjct: 764 VCRQVRGNEIINHIPIIVVTAKITEEERIRGLEAGADAYIVKPFNADELRTRVEKLLDR 822 >gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 221 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ D+II+D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] Length = 234 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+E +L + + + +G +AL + P +I++D+ L I G Sbjct: 5 QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRAKS---NVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121 >gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] Length = 240 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D + ++L ++ G+ NG +AL+ AR+ +PD +I+D+ + + G Sbjct: 14 ARILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 74 GVLRRLQADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131 Query: 123 A 123 A Sbjct: 132 A 132 >gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX] gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX] Length = 230 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E L+ G+ G ALE+ + D++++D+ L +SG Sbjct: 1 MTRVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRTLRQKS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1] gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter sp. ADP1] Length = 228 Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K VM+VED L RD +E SG+ +G EA E Q KP+++I+D+ + + G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|150375913|ref|YP_001312509.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030460|gb|ABR62576.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 121 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 69/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VEDNE+N + + G+ L NG +ELA KPD+I+MD+ L + G Sbjct: 1 MTRILLVEDNEMNRDMLSRRLSRRGFEVLIAENGQAGVELAASEKPDLILMDMSLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++IK D IPVIA+TA AM D E K GC+ Y SKP+ L + I++ + Sbjct: 61 WEATRRIKADPLTSAIPVIALTAHAMASDREMALKAGCDDYDSKPVDLPQLVRKIEQLL 119 >gi|27380235|ref|NP_771764.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27353389|dbj|BAC50389.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 121 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 80/121 (66%), Positives = 103/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EAL+L R+ +PD+++MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTTGTSNGYEALDLVRKMRPDLVLMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLEVTRWIKDDPELRSIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IV+DN+ ++ L+ GYI + NG EA+ D+II+DI + + Sbjct: 1 MAYNVLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKCEAQ--DLIILDIMMPGMD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E L +P++ +T+ + D+E G + Y+ KP S S + + I Sbjct: 59 GFKTCRRIRE---LTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALI 115 Query: 121 GE 122 Sbjct: 116 RR 117 >gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB [Congregibacter litoralis KT71] gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB [Congregibacter litoralis KT71] Length = 236 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 1/124 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + V++V+D + R +E Y L+ N +A + +PD++++D L Sbjct: 1 MSERTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGG 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ +++K D QEIPVI +TA + + + + G + YI+KP + + IK Sbjct: 61 SGIELLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKAL 120 Query: 120 IGEA 123 + + Sbjct: 121 LRRS 124 >gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 268 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D ++ ++ +GY + +G +AL L +PD++++D+ L ++ G Sbjct: 24 ATVLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLPKLDGF 83 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 84 AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140 >gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18] gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 228 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IVED E L+ G+ + NG++AL + + D++++D+ L +S Sbjct: 1 MMSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++E + +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 GMEVCRKLRE---VSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1786 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 75/121 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1439 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1498 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+ I++ EL +PV+A+TA AM GD + + G +I+KPI +++ +T+ KY+ Sbjct: 1499 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1558 Query: 123 A 123 A Sbjct: 1559 A 1559 Score = 98.7 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 11/129 (8%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + +E+ G+ R+G EA+ +V ++D ++ + GLE Sbjct: 1287 VLVVDDNATARDIMCTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346 Query: 65 TK-----------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 + + + ++ V+A A +I + YISKPIS S + Sbjct: 1347 ARQIQLQAQSQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLL 1406 Query: 114 ETIKKYIGE 122 + I IG Sbjct: 1407 DGIMNAIGR 1415 >gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22] gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 246 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++ ED+ + GY +G+EAL A + +PDV+++D+ + I Sbjct: 1 MPQNVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHRTRPDVLVLDVMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + ++ + + P++ +TA D G + Y+ KP + ++ + Sbjct: 61 GLQVCRVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] Length = 224 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ +G EL RQ D++I+DI + +++G Sbjct: 1 MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ PVI +TA D + G + Y+ KP S IK + Sbjct: 61 LELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 237 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 54/116 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E A+Q PD++I D+ + + G Sbjct: 12 RLLLVDDEPGLRTAVQAYLEDEGFDVTTAEDGEEGFIKAQQMLPDLVISDVMMPRLDGFG 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + ++++ED L PVI +TA M D + G + YI KP + ++ Sbjct: 72 LLRKLREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 127 >gi|163845631|ref|YP_001633675.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222523334|ref|YP_002567804.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163666920|gb|ABY33286.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222447213|gb|ACM51479.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 313 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ +D+ L D + +G+ L +G+ + +A++ PD+I++D+ L + G E Sbjct: 9 TVLFADDDPHIRTLLSDTLTQAGFAVLAAEDGLSLIRIAQEQLPDIILVDLMLPGVDGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ D+ +P+I VTA A D G + YI+KP + + + I+ + Sbjct: 69 AIRQLRNDTRTAHLPIIIVTARANPSDVVIGFDTGADDYITKPFNEAELVARIRSLLRR 127 >gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 225 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IVED KL + + Y + NG +AL L + + D+II+D+ L +ISG Sbjct: 1 MEKILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLFKNNNFDLIILDLMLPKISG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I++ + +IP+I +TA + + + G + Y++KP S + +K + Sbjct: 60 EEVCQNIRQ---ISDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 226 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G EAL+ + D++++D+ L E SG Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEKSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +P+I VTA + D+ + G + YI+KP S + I+ + Sbjct: 61 TEVCRELR---TTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D +L +E GY ++ +G EA+ + + D++I+DI + +I G E+ Sbjct: 6 ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKIDGYEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ +P+I ++A D+ G + Y++KP S + + + Sbjct: 66 ARQIR---IKHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLRR 120 >gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] Length = 231 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL+ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] Length = 233 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDNE + GY +G E + + D++I+D L + G+ Sbjct: 2 KILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESWDLVIVDWMLPVMDGVT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E L +P+I +TA + D+ + G + Y++KP S M IK Sbjct: 62 LCRKIRE---LSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRR 117 >gi|300868772|ref|ZP_07113383.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506] gi|300333333|emb|CBN58575.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506] Length = 121 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 70/120 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K V++V+D + ++ +L++ SG ++ +G+EA+E + PD+II+DI + ++G Sbjct: 1 MKTVIVVDDQHSHREMISNLLKGSGINVIEASDGVEAIEKIEVNCPDLIILDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K + Q IP++ + + D K G +AYI+KP + T+K+++ Sbjct: 61 FEVCRRLKNNPLTQNIPIVFCSVKGEEFDRYWGIKQGADAYIAKPFGPRELVGTVKQFLR 120 >gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response regulator [Arsenophonus nasoniae] Length = 234 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++++++VED ++ ++E +G+ ++ + A+ + P +I++D + S Sbjct: 6 MVRRILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLIEPYPALILLDWMIPGGS 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +K D + IP++ +TA + D R + G + Y++KP S + + + Sbjct: 66 GIQLIAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAIL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 219 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D+ + L +D +E GY NG EALE+ + PD+II D+ + E+ G Sbjct: 13 KHLLLVDDDPNLVLLVKDYLEFQGYDVTTAENGKEALEILTKEIPDMIICDVMMPEMDGY 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++D+ +PV+ ++A D + G + Y+ KP + ++ + + Sbjct: 73 SLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLKQ 132 Query: 123 A 123 A Sbjct: 133 A 133 >gi|154253255|ref|YP_001414079.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] gi|154157205|gb|ABS64422.1| response regulator receiver protein [Parvibaculum lavamentivorans DS-1] Length = 124 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 83/121 (68%), Positives = 107/121 (88%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL++ GY LQTR+G+EALE+AR ++PD+I+MDIQL E+S Sbjct: 4 MSKKVLIVEDNELNMKLFHDLLDAHGYETLQTRDGIEALEIARTNRPDLILMDIQLPEVS 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED L+ IPV+AVTAFAMKGDEE+IR+GGCEAYISKPIS++ F+ET+++++ Sbjct: 64 GLEVTKWIKEDDSLRSIPVVAVTAFAMKGDEEKIREGGCEAYISKPISVTQFLETVQRFL 123 Query: 121 G 121 Sbjct: 124 R 124 >gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] Length = 233 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M +++++D++ +L + ++T GY +G + +E + H D++++D+ + I Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K+I+E S +PV+ +TA + D + G + Y++KP S + IK Sbjct: 61 DGFETLKRIRESSI---VPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKAL 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|119715983|ref|YP_922948.1| response regulator receiver [Nocardioides sp. JS614] gi|119536644|gb|ABL81261.1| response regulator receiver [Nocardioides sp. JS614] Length = 123 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ +D+ +L + T G+ + +G A+E + +PD+ ++D+ + +SG Sbjct: 1 MARILVADDDVDIRELVEFKLSTLGHDVVAVSDGAAAIEACQAQRPDLAVLDVMMPGVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+ + I+ D L ++PVI +TA A + D E G + YI+KP S ++ + Sbjct: 61 LDAIRAIRADPALADLPVILLTARAQESDVETGFDSGADDYITKPFSPRELASRVQALLT 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1846 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN K ++ + + +G AL +A + PD+I+ D+ + + G+E+ Sbjct: 1477 VLLVDDNADMRKYLTRIL-SEHFQVEAVADGKTALAVAIEQVPDLILSDVMMPRLDGVEL 1535 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ D +E+P I ++A A + + + G + Y+ KP S + + ++ Sbjct: 1536 LQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVSRVNAHL 1591 >gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L+ A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307545329|ref|YP_003897808.1| response regulator receiver protein [Halomonas elongata DSM 2581] gi|307217353|emb|CBV42623.1| response regulator receiver protein [Halomonas elongata DSM 2581] Length = 123 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D + L+E +G+ +G AL L + PD++++DI L I G Sbjct: 1 MARVLVVDDEPNIVLSLEFLMEQAGFEVTTAEDGETALRLIDEGAPDLVLLDISLPGIGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++++ D + + +I +TA + + E+ G + YI+KP S +E ++ + Sbjct: 61 FEVLERLRSDPAHRHLSIIMLTAHGREVEREKGLALGADDYITKPFSTRTLVEKVRALL 119 >gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661] gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661] Length = 232 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ L +G +AL L + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLI-DNTIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] Length = 2213 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 70/117 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN++N ++ +L+E +G + +G EA E + DVI+MDIQ+ + G Sbjct: 1876 HVLLVEDNDINQQVATELLEMAGLVVTTASDGQEACERVKTELFDVILMDIQMPVMDGYT 1935 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ S +E+PVIA+TA AM GD E+ G +I+KPI + + K++ Sbjct: 1936 ATRHIRKFSGYEELPVIAMTANAMDGDREKCLDAGMNDHIAKPIDPASMFAALVKWV 1992 Score = 99.0 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59 ++IV+D+ + ++ R E ++ + +G EA+E + V+ +D ++ + Sbjct: 1729 ILIVDDSPVARQILRQNGEALTFVVDEASSGEEAIEKLHDYDQLGTPFKVVFIDWKMPGM 1788 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 G+E +IK + ++ P ++ VTA+ + ++KP++ S ++ Sbjct: 1789 DGVETCHRIKSEENIESPPNIVMVTAYDRHELIHEMEGMEVSGVLTKPVTQSSMLDA 1845 >gi|289677217|ref|ZP_06498107.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Pseudomonas syringae pv. syringae FF5] Length = 194 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE Q D+++MD + + G Sbjct: 71 ARVLLVEDNPVNQLVAKGILGKLGCEVIISSHGGEALEQLEQGHFDLVLMDCNMPVMDGY 130 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + + ++I Sbjct: 131 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELVSILDQWI 188 >gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 234 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M V IV+D + ++L + + GY NG L+ + +PD++I+DI L +I Sbjct: 1 MSAYTVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI K+I+++SE +P+I ++A + D+ + G + YI KP SLS IKK Sbjct: 61 DGYEICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|153875815|ref|ZP_02003442.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152067721|gb|EDN66558.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 341 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK V++V+DN N+K+ ++++ ++G +AL + PD+I++DI + ++ Sbjct: 1 MSKKLVLVVDDNSENLKVLGNILKEHDLSPAFAQSGFKALTSINKKIPDLILLDIMMPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K++K+D + IP+I +TA D + G Y++KP + M + + Sbjct: 61 DGFEVCKRLKQDETTKGIPIIFLTAKVETDDVVTGLELGAVDYVTKPFNSRELMSRVNTH 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|126659636|ref|ZP_01730766.1| hybrid sensory kinase [Cyanothece sp. CCY0110] gi|126619082|gb|EAZ89821.1| hybrid sensory kinase [Cyanothece sp. CCY0110] Length = 377 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 60/116 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY + NG AL Q D+I++DI + ++G E+ Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVPADLILLDINMPSMNGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D Q+IP+I ++A D+ + G YI+KP + I+ + Sbjct: 68 CQQLKNDPITQDIPIIFISALDDVLDKVKAFDLGGVDYITKPFQAEEVIARIENQL 123 >gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 229 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED + ++ + +E GY + NG +AL Q D++++DI + ++S Sbjct: 1 MAERILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ + P+I +TA D+ G YI+KP + + ++ ++ Sbjct: 61 GLEVLRRVRRAEN--QTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHL 118 Query: 121 GE 122 + Sbjct: 119 RK 120 >gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 229 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + +G+ + + + PD+I++D L ++S Sbjct: 1 MAVNILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALLERVPDLILLDWMLPDVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ +++K D +++P+I +TA + D+ R + G + Y++KP S + I+ + Sbjct: 61 GIDWARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 261 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G AL R+ KPD++++D+ L ++ Sbjct: 37 MKARVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLPGMN 96 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K I+ +S +P++ +TA + D + G + Y+ KP + I+ + Sbjct: 97 GIDVCKAIRSESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARM 153 Query: 121 GE 122 Sbjct: 154 RR 155 >gi|224536541|ref|ZP_03677080.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM 14838] gi|224521797|gb|EEF90902.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM 14838] Length = 1493 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN L R+++ Y L+ NG E L+LA + PD+II D+ + + GLE+ Sbjct: 1228 ILIVEDNRELRSLLRNILSKK-YTILEAANGEEGLKLASEAIPDMIISDVMMPVMDGLEM 1286 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 K+IKE+ ++ +P+I ++A A D + G + YI+KP S S I Sbjct: 1287 IKRIKENKDICYVPIILLSAKASLDDRITALEQGIDDYITKPFSSSYLKARIASL 1341 >gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 216 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L +D +E GY + NG EAL++ Q PD+II D+ + E+ G Sbjct: 10 KRLLLIDDDPNLILLVKDYLEFRGYDVITAENGREALDVLAQDIPDMIICDVMMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++D + +PV+ ++A D + G + Y+ KP + ++ + + Sbjct: 70 ALVEYVRQDPSMNWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQVESSLRQ 129 Query: 123 A 123 A Sbjct: 130 A 130 >gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1765 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 71/120 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDN++N ++ + +E G + NG ALE D+++MD Q+ + G Sbjct: 1421 KRILLVEDNDMNQEVATEFLEQVGVVLSIADNGQIALEKLAMQSFDLVLMDCQMPVMDGY 1480 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+++++ L +PVIA+TA AM GD E G +I+KPI +S+ + +Y+G+ Sbjct: 1481 QATRELRKLPGLANLPVIAMTANAMAGDREMCLDAGMNDHIAKPIEVSLLYSRLLQYLGD 1540 Score = 110 bits (277), Expect = 7e-23, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + R +E+ G++ ++G +A+E + V ++D Q+ E++GLE Sbjct: 1280 RILVADDNATARDILRTTLESMGFVVDAVKSGSDAIERCQHTHYPVALIDWQMPEMNGLE 1339 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I + E V+ V+A A E+I + G YI+KPIS S ++ I +G+ Sbjct: 1340 AAEVIFAEQETPP-KVLIVSAHANAEFLEQIERSGIAGYITKPISASRLLDGIMSSLGK 1397 >gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens TC1] gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens TC1] Length = 239 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D +L + +G+ + NG EAL A H PD+ ++D+ L ++ G Sbjct: 11 AKLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPDMDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 71 TVTRRLRA--AGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128 >gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 229 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 246 Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +K+ + +GY L ++G +ALE+ + PD++++D+ L ++ G + Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +S +P+I +TA + G + Y++KP S I + Sbjct: 64 CRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRR 118 >gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 228 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K VM+VED +L RD +E +G+ +G EA Q KP ++I+D+ + + G Sbjct: 1 MKHVMLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L+ A Q D+II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++ T G+ +G +AL KPD++++D+ L + Sbjct: 1 MTARILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ I+ +S +P+I +TA + D + + G + YI KP + + I+ + Sbjct: 61 GIQVCDLIRAESG---VPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRL 117 Query: 121 GEA 123 A Sbjct: 118 RPA 120 >gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D +++ + +E GY + +G EAL +A + +P++I++DI + +I G+E Sbjct: 5 KILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKEQPNLIVLDIMMPKIDGVE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ E + +TA + G + YI+KPI +F+ IK + + Sbjct: 65 VCRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRRS 124 >gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] Length = 235 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED+ L R +E GY +G +AL+ D +I+D+ L + G Sbjct: 1 MKQILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ + +PVI ++A + + D + G + Y++KP S+ + IK Sbjct: 61 LEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120] gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120] Length = 225 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA + + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + + L+ NG EA+++ + +II+D+ + ++ G Sbjct: 13 KILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEKDIALIILDVMMPKMDGW 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+++S+ +P+I +TA + + DE G + YISKP S I + ++ + Sbjct: 73 EVCREIRKNSK---VPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 129 >gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W] gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W] gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|284993166|ref|YP_003411721.1| histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284066412|gb|ADB77350.1| histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 919 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN L+ + NG EAL+ R +P V++ D+ + + G ++ Sbjct: 600 VLVVDDNADMRAYLTRLLSPV-WTVRTATNGQEALDAVRAARPHVVVTDVMMPGLDGFDL 658 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ D L+++PV+ +TA A + G + Y++KP + + ++ + A Sbjct: 659 LRALRADPALRDVPVVMLTARAGQEAAVEGFDAGVDDYLAKPFESAELIGRLRAVVERA 717 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D L + +GY +G EAL LA KPD++I+D+ L ++ G Sbjct: 10 ARLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ ++P++ +TA D+ + G + Y++KP L + I + Sbjct: 70 TVTRKLRA--AGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127 >gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1792 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 75/121 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1445 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1504 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+ I++ EL +PV+A+TA AM GD + + G +I+KPI +++ +T+ KY+ Sbjct: 1505 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1564 Query: 123 A 123 A Sbjct: 1565 A 1565 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 17/135 (12%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +E+ G+ R+G EA+ +V ++D ++ + GLE Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346 Query: 65 TK-----------------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107 + + + ++ V+A A +I + YISKPI Sbjct: 1347 ARQIQLQAQSQSQSQSQPQSHPQPQPQPQPKILMVSAHADHEFLTQIEQLALAGYISKPI 1406 Query: 108 SLSIFMETIKKYIGE 122 S S ++ I IG Sbjct: 1407 SASRLLDGIMNAIGR 1421 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ + R + +GY +G+EAL++ +PD +++D+ + + GLE Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++P++ +TA + G + Y+ KP +L + ++ + Sbjct: 62 VCRQLRGTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 >gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1784 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 75/121 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1437 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1496 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+ I++ EL +PV+A+TA AM GD + + G +I+KPI +++ +T+ KY+ Sbjct: 1497 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1556 Query: 123 A 123 A Sbjct: 1557 A 1557 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +E+ G+ R+G EA+ +V ++D ++ + GLE Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346 Query: 65 TK---------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + + + ++ V+A A +I + YISKPIS S ++ Sbjct: 1347 ARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDG 1406 Query: 116 IKKYIGE 122 I IG Sbjct: 1407 IMNAIGR 1413 >gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 954 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+DN +N K+ ++E GY NGMEAL +H+ ++ MD Q+ E+ GL Sbjct: 815 QRLLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAVCRHQYPLVFMDCQMPELDGL 874 Query: 63 EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I+ + +P+IA+TA AM GD E K G + +ISKPI E + +++ Sbjct: 875 ETTRLIRSQEQAGTHLPIIAMTANAMAGDRENCLKAGMDDFISKPIVPDQLREILSRWLP 934 Query: 122 EA 123 A Sbjct: 935 SA 936 Score = 105 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 5/125 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 ++V +V+DN N L + + + AL L RQ D+ I+DI + Sbjct: 666 RRVCLVDDNPTNRSLLQYHVSGWNMHHESAVDAPSALALLRQAAADGTPFDLAIIDIHMP 725 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +I GL++ + IKED ++ +I +TAF +GD ++ G AY+ KP+ + I+ Sbjct: 726 DIGGLQLCRLIKEDPAIRATHLIVLTAFGQRGDSIAAKEAGASAYLPKPVRERQLADCIR 785 Query: 118 KYIGE 122 +G Sbjct: 786 LILGR 790 >gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] Length = 232 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L ++ G+ + NG +AL + ++ I+D+ L +I Sbjct: 1 MSINILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GFTICQKIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1102 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L DL+ GY G AL+ A+ PD+I++DI + E+ G E+ Sbjct: 13 ILIVDDMVDNLRLLSDLLTEQGYKVRGVSKGTMALKAAKSFSPDLILLDIMMPEMDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +K +IP+I ++A D+ + G YI+KP + + +K ++ Sbjct: 73 CQHLKAAENTCDIPIIFISALNDAADQLKAFAVGGVDYITKPFRIEEILARVKNHLR 129 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 44/118 (37%), Positives = 76/118 (64%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N+ + +E GY NG+EA+++AR+ KP++++MDIQ+ + GLE Sbjct: 979 ILLAEDNEANISTIVEYLEAVGYRVATALNGVEAIQMARELKPNLVLMDIQMPAMDGLEA 1038 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+Q++ D E ++P+IA+T+ AM GD E+ + G Y++KP+SL +E I + Sbjct: 1039 TRQLRADVEFVQLPIIALTSLAMPGDREKCLEVGVNEYLAKPVSLKKLVEAIAFQLDR 1096 Score = 84.8 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRN-GMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED+ + + G + G ++ A Q PD II+D+QL + SG + Sbjct: 845 VLIVEDSAPAAEQIAHYLAELGINNSAIYSLGTGIVQEAIQINPDAIILDLQLPDRSGWD 904 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + Q+K + Q IP++ V+ R Y+ KP S F ++K Sbjct: 905 VLAQLKAEPRTQNIPILIVSVADEP---VRSPAASVYEYLVKPFSRHQFQLALRKL 957 >gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus DSM 14838] Length = 243 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L ++ +E +GY + +G+ L L R H D++I DI L ++ G Sbjct: 16 MHTILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHTFDLVISDIILPKMDG 75 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + IP++ +TA D+ G + Y+ KP I+ + Sbjct: 76 FELCKEIRKTN--PGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLK 133 Query: 122 E 122 Sbjct: 134 R 134 >gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + Sbjct: 1 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|158335457|ref|YP_001516629.1| sensory box/response regulator [Acaryochloris marina MBIC11017] gi|158305698|gb|ABW27315.1| sensory box/response regulator, putative [Acaryochloris marina MBIC11017] Length = 572 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED + ++++E GY L+ NG+ L+LA+Q PD+I+ D+ + E+ G Sbjct: 1 MPKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K ++ + + IP+I +TA + + G + YI+KP + + I + Sbjct: 61 FDVLKGLRANPGIGSIPMIFLTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARL 119 >gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED++ + + +E G+ A +G+ ALEL R PD++I+D L + G Sbjct: 1 MPRILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPLVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 EI ++++ IP+I +TA + D+ + G + Y++KP S + + + Sbjct: 61 AEICRRLRAAG---NIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVL 116 >gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1784 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 75/121 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1437 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1496 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+ I++ EL +PV+A+TA AM GD + + G +I+KPI +++ +T+ KY+ Sbjct: 1497 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1556 Query: 123 A 123 A Sbjct: 1557 A 1557 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +E+ G+ R+G EA+ +V ++D ++ + GLE Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346 Query: 65 TK---------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + + + ++ V+A A +I + YISKPIS S ++ Sbjct: 1347 ARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAGYISKPISASRLLDG 1406 Query: 116 IKKYIGE 122 I IG Sbjct: 1407 IMNAIGR 1413 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D +L + +G+ + NG EAL +PD+ ++D+ L ++ G Sbjct: 8 AKLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 IT++++ + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 68 TITRKLRA--AGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125 >gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1702 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N +L L+E G+ NG++A+ + D+I+MD+Q+ + G E Sbjct: 1472 ILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAVAASEMKDFDLILMDVQMPHMGGFEA 1531 Query: 65 TK--QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T +I+E + P+IA+TA A++ D+E+ G + Y+SKPI+ I+KY+G Sbjct: 1532 TSTIRIREKVMNKHTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINPDQLRAVIEKYLG 1590 Score = 76.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 9/125 (7%) Query: 1 MLKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMD 53 MLK V +I++DN+ ++ ++ G A T + A + R+ + I MD Sbjct: 1322 MLKDVNTLIIDDNKSTRRVLHQMLSEYGVSADTTDSQDSAFHMLREAAMKKQPYEYIFMD 1381 Query: 54 IQLQEISGLEITKQIKEDSELQEIPVIAVT-AFAMKGDEERIRKGGCEAYISKPISLSIF 112 QL G + + IK+D + +I + +GD E R Y+SKP+S Sbjct: 1382 AQLNGKDGFLVAEAIKQDPSFGQASIIMLICGSGQRGDPEN-RSSVISGYLSKPVSPVEM 1440 Query: 113 METIK 117 +E I+ Sbjct: 1441 LEVIQ 1445 >gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 235 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D + ++ + GY + +G+EALE ++ K D+II+DI + ++ G+ Sbjct: 8 KTILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEKIDLIILDIMMPKLDGI 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ED +++P+I ++A + D+ G + YI KP + + +K + Sbjct: 68 RTCIKIRED---KKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRR 124 >gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 1149 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G I RNG EA+E QH D+++MD+ + E+ G Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1144 Query: 122 E 122 + Sbjct: 1145 Q 1145 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E ELA Q+ PD I++D++L + SGL + Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 818 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP S E + Sbjct: 819 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870 Score = 74.0 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++L + LI +AL L RQ+ D +I+D++L ++ G Sbjct: 879 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGN 938 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T + +EE Sbjct: 939 ELLKRMTAEDIRAFPPVIVYTGRNLTREEEA 969 >gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1491 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 46/118 (38%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDNE+N+ D + GY RNG EA+ LA + PD+I+MDIQ+ E+ GL Sbjct: 1370 ARILLAEDNEINITAIGDYLSDKGYTLTIARNGREAVALAHETHPDLILMDIQMPELDGL 1429 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+Q++ P+IA+TA AM GD ER G Y++KPISL + I++ + Sbjct: 1430 SATRQLRATPTFATTPIIALTALAMPGDRERCLAAGANEYMAKPISLRSLVLVIEQLL 1487 Score = 107 bits (270), Expect = 5e-22, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED+E + + + G AL+ PDVI +DIQL + SG E+ Sbjct: 1232 LVIEDSETSGEQIARYLGELRIDTTIHSRGAGALDRVLSVHPDVIFLDIQLPDQSGWEVL 1291 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +K D L+ IPVI ++ D R G AY+ KPI+ I T+ Sbjct: 1292 EHLKADPHLRSIPVIIISVLD---DRIRGMAAGASAYLVKPITRDILRHTLSSI 1342 >gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED +L +D +E S + +G + LE A ++ D+II+DI L + G Sbjct: 1 MSKVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+E +EIP++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKQIRE---AKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLN 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1131 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 K V++V+D+ N+ L+E + + +G EA++ L Q + D+++MDI + + G Sbjct: 1011 KTVLLVDDDMRNVFSISTLLEENKLTVITASDGQEAIDTLISQSQIDLVLMDIMMPVMDG 1070 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ ++ ++P+IA+TA AM GD E+ + G YI+KP+ ++ + + ++ Sbjct: 1071 YEATRKIRAENRFAKLPIIALTAKAMPGDREKCLEAGASDYITKPLDVNQLLSVMHTWM 1129 Score = 77.9 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 4/110 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ + +D T GY L G E L AR+++P II+D+ L + G+ + Sbjct: 744 LIIEDDARFASVVQDFARTKGYKTLVALQGDEGLAYARRYEPTAIILDLHLPALDGISVL 803 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 K +K+D +L IPV ++A DE+++ G AY+ KP++ + Sbjct: 804 KLLKDDKKLSSIPVHVMSA----SDEQQLVLPGALAYLQKPLTKQDLEDA 849 >gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 227 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D++ L + +E GY L+ NG EAL + ++ D++I+D+ + + Sbjct: 1 MNINILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVMMPILD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +I+E+ +P+I ++A + D+ + G + Y+SKP + +K + Sbjct: 61 GISACIKIREN---YTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|119487003|ref|ZP_01620875.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119455932|gb|EAW37066.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 125 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 75/122 (61%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE+N+ + + + GY L +G + +EL+R +PD+I+MD+ L + G Sbjct: 1 MAKILLVEDNEMNLDMLKRRLSRKGYELLIAVDGAQGVELSRSDQPDIILMDMSLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T++I+ + IPVIA+TA AM GD E+ GC+ Y +KPI +E I+ + Sbjct: 61 WQATREIRNYPNTKHIPVIALTAHAMAGDREKCMAAGCDDYDTKPIEFPRLLEKIETLLK 120 Query: 122 EA 123 +A Sbjct: 121 KA 122 >gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ + + GY LQ ++G L A PD++++D+ L E++G Sbjct: 5 TRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K++++ ++ PV+ ++A M+ D+ G + Y+ KP L + IK + Sbjct: 65 FEVLKELRQ--RGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ +L R +E GY +QT +G+EA+++ RQ +PD++I+DI L ++ GL Sbjct: 6 TILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPDLDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E +P++ +TA M D G + Y+ KP + + I+ + Sbjct: 66 VCQKVRE---FASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRR 121 >gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271] Length = 223 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016] gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 232 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D + + + R +E +GY NG EA++L + P +I++D+ L +ISG Sbjct: 5 KKILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEKISPALIVLDLMLPDISGE 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I K +++ S +P+I +TA + G + Y++KP S + + ++ Sbjct: 65 DICKMLRKKSR---VPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLRR 121 >gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae Rd KW20] gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 86-028NP] gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.1-21] gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 3655] gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittAA] gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittII] gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittGG] gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 6P18H1] gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 7P49H1] gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Haemophilus influenzae F3031] gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB) [Haemophilus influenzae Rd KW20] gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 86-028NP] gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.1-21] gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 3655] gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittAA] gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittII] gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittGG] gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 7P49H1] gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 6P18H1] gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus influenzae R2866] gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3031] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED ++ + Y ++ + A+ +++ P +I++D L S Sbjct: 1 MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ + IK+ IP+I +TA + + D G + YI+KP S I + I+ Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Erwinia amylovora CFBP1430] gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia amylovora CFBP1430] gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia amylovora ATCC BAA-2158] Length = 233 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ L +G +AL L D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDS-TVDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 LDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 233 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + G+ L+ NG EA++L Q +II+D+ + ++ G Sbjct: 13 KILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPKMDGW 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I++ ++P+I +TA + + DE + G + YISKP S I + ++ + Sbjct: 73 ETCRTIRK---YSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRR 129 Query: 123 A 123 + Sbjct: 130 S 130 >gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 228 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K VM+VED L RD +E +G+ +G +A +Q KP+++I+D+ + + G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] Length = 227 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E+SGY +G +AL + PD++++D+ L + Sbjct: 1 MSSKILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI ++I++ +P+I +TA D + G + Y+ KP + + + Sbjct: 61 GIEICRRIRQ---TSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241] gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L] gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W] gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1] gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055] gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B] gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum] gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94] gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI] gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241] gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L] gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W] gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1] gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 243 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60 ++++++V+D E + + + +E +GY+A + E + R+ +P D+II+D L ++S Sbjct: 1 MERILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I K ++++ IP+I +TA + + + G + YI+KP I+ + Sbjct: 61 GLDICKILRQEGIT--IPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei] Length = 223 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D+ L +E G+ + +G A++ A D II+D+ L +++ Sbjct: 1 MSNHILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+E E PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 61 GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 227 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN + D ++ G+ ++G+ L LA D+I++DI L I G + Sbjct: 2 RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED E+P++ +TA D + G + Y+ KP +LS + I+ + + Sbjct: 62 VCKRLREDGR-SEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120 >gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 233 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K V+I+ED+ +L + +E GY+ +G LE + PD I +DI L Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +I G E+ ++I+ D+ ++IP+I +T D+ + G + Y+ KP + + +K Sbjct: 61 KIDGWELCQEIRWDN--KKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMK 118 Query: 118 KYIGEA 123 + A Sbjct: 119 AVMRRA 124 >gi|269958888|ref|YP_003328677.1| response regulator [Anaplasma centrale str. Israel] gi|269848719|gb|ACZ49363.1| response regulator [Anaplasma centrale str. Israel] Length = 456 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL + + Y L +G EA++LAR+ PD+I++D+ + + Sbjct: 1 MTARILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLAREKHPDLILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119 G E ++++ D IPV+ VTA D G + +++KPI+ I+ Sbjct: 61 GYETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISSGADDFLTKPINDVALFSRIRSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 57.8 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 6/116 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+MI++ +++ + +++ N + + D+ I+D+ GL Sbjct: 157 AKIMILDSDKVRSEHMNSVLQEYFQETAVLDNPSQDVNFQNAESYDLFIVDLNFGG-DGL 215 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIFMET 115 + + ++ + P++ + D E R + G YI PI + + Sbjct: 216 RLCSNFRSNNNTRYTPILVL--LDESDDTEILSRAFEIGISDYIMAPIDSNELLAR 269 >gi|257094697|ref|YP_003168338.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047221|gb|ACV36409.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 122 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D + + L+ G+ L +G EAL R +PD++++D+ + ++ Sbjct: 1 MSKKILIADDEQNIVISIEFLLRREGFEVLVAGDGEEALARVRAERPDLVLLDVMMPRMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + ++ D +L ++ +TA + + G + Y++KP S + ++K + Sbjct: 61 GFDVCQALRADPDLSGTRILMLTAKGRDTEVSKGLGLGADGYMTKPFSTKELLAEVRKLL 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] Length = 232 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D L ++ Y + + MEALE + + D+ I+DI L + Sbjct: 1 MSEKILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA + D+ G + Y++KP + +K + Sbjct: 61 GFSICQKIRERYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D +L + + +G+ +G+ AL AR +PD+II+D+ L + G E+ Sbjct: 6 ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPALDGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ + ++ +TA + D + + G + Y+ KP S + ++ Sbjct: 66 CRQLR---TFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRR 120 >gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 234 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++++D+ L + +E +G+ + + L LA++ PD++++DI L + Sbjct: 1 MSKSILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ ++ +E+ PVI VTA + D+ + G + YI+KP +I + IK + Sbjct: 61 GLDALRRFREEVGA---PVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|229159665|ref|ZP_04287676.1| Two-component response regulator [Bacillus cereus R309803] gi|228623816|gb|EEK80631.1| Two-component response regulator [Bacillus cereus R309803] Length = 223 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED + GY +G L D++I+D L Sbjct: 1 MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++ ++ + PV+ +TA + G + Y++KP + + ++ + Sbjct: 61 GIQLLRRFRQKNRT--TPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED R + GY +G +ALE+AR+ PD++++D+ L I Sbjct: 1 MSA-ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ ++P+I +TA D + G + Y+ KP + + I+ + Sbjct: 60 GLEVARRLRA---ASDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++ ED +L ++ Y +G EAL + + PD++++D L ++S Sbjct: 1 MKPYVLVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI ++++ +P+I +TA + D R G + Y++KP S + M ++ + Sbjct: 61 GIEICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|303327814|ref|ZP_07358254.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302862175|gb|EFL85109.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 1165 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDNE+N ++ +L+E G + ++G EA+EL R D+I MDIQ+ + GL Sbjct: 1041 ARVLLAEDNEINQEVALNLLEGLGMRVVLAKDGAEAVELCRGQSFDLIFMDIQMPIMDGL 1100 Query: 63 EITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + E P+IA+TA AM GD E+ + G +I+KPI + ++ Sbjct: 1101 TATRKIRALPGIGPSEPPIIAMTAHAMSGDREKSLEAGMNDHITKPIDPRTLRRKLCAWL 1160 Query: 121 GE 122 Sbjct: 1161 AR 1162 Score = 40.5 bits (95), Expect = 0.082, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNG-----MEALELARQHKPDVIIMDIQLQ 57 ++V++ + + L++ +G LA D+ ++D L Sbjct: 892 RRVLLAAGSPACRDVLARLLDDMRMTVRTVDSGTAALEAARAALAEGAPFDLALVDHHLP 951 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETI 116 GL+ + S ++ V A M + G + KP+ + + Sbjct: 952 GEGGLDCAAALGRLSNGLLPRLLLVPASYMDQYHDAPGLDAG-TRILPKPVWRASLRNAV 1010 Query: 117 KKYIG 121 +G Sbjct: 1011 VAALG 1015 >gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D++ +L +++ G+ + NG +ALE + K D+ ++DI + ++ G Sbjct: 1 MNKILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E KQ + E ++P++ +TA + + + + G + Y++KP + + IK + Sbjct: 61 YEFCKQARRYYE--DMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241] gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293] gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI] gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241] gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293] gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G EALE A+ + PD++++D+ L ++ G Sbjct: 1 MTRVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN-PDLVLLDLGLPKVDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ E + IPV+ +TA A + D G + Y++KP L+ + ++ + Sbjct: 60 LEVCRRLRA--EGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D+ ++L +E +GY L +G L LAR +PD++++D+ L + G Sbjct: 1 MQTILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I + ++ D L +P+I +TA D + G + YI KP + + ++ + Sbjct: 61 YSIVQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + +G+ +GM AL+L R +PD++++D+ L ++ G Sbjct: 6 ARLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++E + Q +PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 66 TVTRRMRE--KGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 123 >gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRKA 122 >gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + G Sbjct: 1 MPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 656 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E K+ + + Y +G E + LA K D+I++D L +++G++ Sbjct: 2 RILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLPKLTGID 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + KQ++ + P+I +TA ++ G + Y+ KP+ + + I+ + + Sbjct: 62 LCKQLR--NARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRS 119 Score = 131 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++IV+D+ + R ++E G+ + + E Q PD++I+D+Q+ E SG+ Sbjct: 523 AKLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGI 582 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + ++ D E+PV+ ++A +++ G + Y+ KPI + + I Sbjct: 583 DLCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIER 642 Query: 123 A 123 + Sbjct: 643 S 643 Score = 73.6 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE--I 59 +++IV+D+ + + + +A + +++PDV+++D+ + Sbjct: 397 SPRLLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAG 456 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GLE+ ++K + V+ + R+ + G ++ KP++ M+ I K Sbjct: 457 NGLELLAELKTTQPPVPVVVLT--VKESFAERVRVARLGGRGFLRKPVAPQKVMDAIAKA 514 Query: 120 IGEA 123 + ++ Sbjct: 515 LQQS 518 >gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 261 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED + ++ RD +E + Y L +G+ AL+LAR+ + D++++DI L + G Sbjct: 20 MATILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGLPGLDG 79 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ED IP++ V+A D+ + G + YI KP S+ + ++ ++ Sbjct: 80 FSVCRVLREDL---HIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLR 136 Query: 122 E 122 Sbjct: 137 R 137 >gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 232 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL RD + Y L+ +G AL++ ++ +II+D+ + +++G Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEKNIALIILDVMMPKMNGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+E ++P+I +TA + DE + G + YISKP S I + + + Sbjct: 65 EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121 >gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] Length = 229 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L RD +E SG+ +G L+ A D++I+D+ L G Sbjct: 1 MSKILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLMLPGTDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I +Q++ +++ P++ V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FDICRQVR---DVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED +E+ GY +G AL +P I++D+ + + GL Sbjct: 2 RVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ D + P++ +TA D G + Y+ KP L + ++ + + Sbjct: 62 MCRRLRADGD--RTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRS 119 >gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] Length = 231 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ + GY ++ + A++ + KP +I++D L SG Sbjct: 1 MTKILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKLVE-KPQLILLDWMLPGRSG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + +K+ + + IPVI +TA + + D G + YI+KP S I + I+ + Sbjct: 60 IQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAMLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] Length = 238 Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + D + Y L+ ++G+EA E+ R +PD++++DI + GL Sbjct: 5 KILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTAQPDLVLLDIMMPGEDGLS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++E PVI +TA A D + G + Y++KP + + IK + A Sbjct: 65 L---LREWQATGGPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRA 121 >gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 230 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++IVED +L + +E GY G E L ++H D++++D+ L E+ Sbjct: 1 MSKGRILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPEL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGLE+ ++I+ + + + PVI +TA D+ G YI+KP + I+ + Sbjct: 61 SGLEVLRRIRANDD--QTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVW 118 Query: 120 IG 121 + Sbjct: 119 LR 120 >gi|255034345|ref|YP_003084966.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254947101|gb|ACT91801.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1324 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ R+L E+ + L+ NG+ L+LA +H PD+++ DI + +++GL+ Sbjct: 1073 TILIVEDNDQLRVFIRELFESE-FNTLEAENGLRGLQLANEHLPDIVLSDIMMPDMNGLQ 1131 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +K++ IPV+ +TA A G + Y+ KP I ++ I Sbjct: 1132 LCSHLKKNITTSHIPVVLLTARAQNQQIIEGLASGADDYLVKPFDPRILELKVRNLIR 1189 >gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 247 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D ++ + GY + NG EAL+ +PD++++D+ + ++ G + Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVMMPKLDGYGV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 71 IQELRKES---DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125 >gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 248 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D ++ + GY + NG EALE R +PD++++D+ + ++ G + Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVMMPKLDGYGV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++++S ++P++ +TA D + G + Y+ KP S I+ + Sbjct: 71 IQELRKES---DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125 >gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 230 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++IVED +L + +E GY G E L ++H D++++D+ L E+ Sbjct: 1 MSKGRILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPEL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGLE+ ++I+ + + + PVI +TA D+ G YI+KP + I+ + Sbjct: 61 SGLEVLRRIRANDD--QTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVW 118 Query: 120 IG 121 + Sbjct: 119 LR 120 >gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42] gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + L + +E SGY + +G EALELA PD+I++D+ L ++ Sbjct: 1 MNKKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ+++ + +P++ +TA + D+ + G + Y++KP S +K + Sbjct: 61 GIDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAIL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 245 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY + +G EAL + + PD+I+ DI + ++ Sbjct: 19 MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEVYHPDLIVTDIVMPRMN 78 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ + +PVI +TA + + GC+ Y+ KP L I + Sbjct: 79 GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIHNLL 138 Query: 121 GEA 123 + Sbjct: 139 ERS 141 >gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED + + G++ + G ALEL R +PD+I++D+ L EI GL Sbjct: 7 KRILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRAFRPDLILLDLMLPEIGGL 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I+ S ++P++ VTA A + D + G + YI+KP S + ++ + Sbjct: 67 EVARTIRAQS---DVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLRR 123 >gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium DSM 319] Length = 917 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 K+V+IV+D++ N+ + + G + NG+E LE+ + D+I+MDI + ++ G Sbjct: 797 KRVLIVDDDQRNIFALKTALAKQGMTIMTAHNGIECLEMMKNSEPFDLILMDIMMPQMDG 856 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + +L ++P+IA+TA AMK D E+ + G YISKP+ L+ ++ ++ Sbjct: 857 YEAMQKIRGELKLVDLPIIALTAKAMKNDREKCLEAGASDYISKPLDLNQLFSVMRVWL 915 >gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF] gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +M+VED L D +E +G+ +G +A +Q KP+++I+D+ + + G Sbjct: 1 MKHIMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1782 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 75/121 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1435 KRILLVEDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQHFDLVLMDCQMPVMDGY 1494 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+ I++ EL +PV+A+TA AM GD + + G +I+KPI +++ +T+ KY+ Sbjct: 1495 QATQAIRKRPELANLPVVAMTANAMAGDRDMCIRAGMNDHIAKPIEVNVLYQTLLKYLAP 1554 Query: 123 A 123 A Sbjct: 1555 A 1555 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +E+ G+ R+G EA+ +V ++D ++ + GLE Sbjct: 1287 VLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVALIDWKMPNMDGLET 1346 Query: 65 TK-------QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + + ++ V+A A + +I + YISKPIS S ++ I Sbjct: 1347 ARQIQLQAQSQSQSQPQSQPKILMVSAHADREFLTQIEQLALAGYISKPISASRLLDGIM 1406 Query: 118 KYIGE 122 IG Sbjct: 1407 NAIGR 1411 >gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++IV+D + + R E G+ +T +G +AL R D++I+DI L I G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +Q++ + Q PVI +TA A + D + G + Y+ KP S + ++ + Sbjct: 61 FGVLRQMRAEGFEQ--PVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 64 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae Ep1/96] gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96] gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia pyrifoliae DSM 12163] gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617] Length = 233 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ L +G +AL L D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDS-TVDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|213968683|ref|ZP_03396825.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385668|ref|ZP_07234086.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302061742|ref|ZP_07253283.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302133321|ref|ZP_07259311.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926616|gb|EEB60169.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 783 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 720 QATRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 777 >gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134] gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134] Length = 232 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L + +E +GY NG EA+++A+ P +I+MDI + ++ G+E Sbjct: 8 KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++E +E+ + +I +TA + E G + YI+KPI + I Sbjct: 68 AGRQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRR 126 >gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D E ++ + G+ L + G EALE A + KP ++++D L E+S Sbjct: 1 MSHTLLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWMLPEMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ S + +I VTA + D+ + G + YI+KP SL I+ + Sbjct: 61 GIEVCRELRKMSRMG---IIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+++V+D KL +D + GY+ L+ +GMEA++L + K +II+D+ + ++ G Sbjct: 4 AKILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPKMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++E ++P+I +TA + + DE + + G + YISKP S I + + + Sbjct: 64 WQVCREVRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|260173192|ref|ZP_05759604.1| histidine kinase [Bacteroides sp. D2] gi|315921466|ref|ZP_07917706.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695341|gb|EFS32176.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1376 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + R+ Y + +G EAL+ + PD+II D+ + ++G+E Sbjct: 1133 TILLVDDNHEILMILREYFVKE-YNIIMAIDGQEALDKCNRSLPDMIISDVMMPRMNGIE 1191 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +K++ + IP+I +TA + D+ + G +AYI KP + + ++ + ++ Sbjct: 1192 LCATLKKNLQTCFIPIILLTAKSQIEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNKS 1251 >gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 237 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K ++++VED + + +E + + ++ +G EAL ++ +P ++++DI L Sbjct: 1 MKGQERILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++++ E I VI +TA D+ + G + Y+ KP + + I+ Sbjct: 61 MDGLEVCRRLR--VESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRA 118 Query: 119 YIGE 122 + Sbjct: 119 VLRR 122 >gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D +L +E GY ++ +G EA+ + + D++I+DI + ++ G E+ Sbjct: 6 ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKMDGYEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+QI+ +P+I ++A D+ G + Y++KP + + + + Sbjct: 66 TRQIR---VKYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLRR 120 >gi|229171369|ref|ZP_04298954.1| Two-component response regulator [Bacillus cereus MM3] gi|228612073|gb|EEK69310.1| Two-component response regulator [Bacillus cereus MM3] Length = 223 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ L +G ALE + D++++D+ L +SG Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E K + ++ Y+ +G + + + D+II+D+ L +++G++ Sbjct: 2 RILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGVD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S Q PV+ +TA D+ + G + Y+ KP L I+ + Sbjct: 62 LCQRLR--SAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRR 118 >gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] Length = 247 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E L R +E GY+ G EA ++ PD++I+D L +S Sbjct: 1 MSARIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ E + +P++ +TA + + R G + Y+ KP S + ++ + Sbjct: 61 GVELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAML 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|332711348|ref|ZP_08431280.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] gi|332349897|gb|EGJ29505.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] Length = 579 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 67/120 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++K++++ED E + +L++ G+ + NG + LA+ PD+II D+ + E+ Sbjct: 1 MMRKILVIEDEEFVRENIIELLDAEGFDVIGAENGRVGVNLAKGTIPDLIICDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++DS + +P I +TA A K D + + G + YI+KP + + + +I + Sbjct: 61 GYSVLTSLRQDSMMATVPFIFLTAKAAKNDFRQGMELGADDYITKPFTRAELLGSIASRL 120 >gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + G+ +GM A+ LA++ P VI++D+ + + G E Sbjct: 8 RILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMPGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + IK+ E+ VI +TA D + G + Y+ KP S + I+ + Sbjct: 68 TCRMIKK--GGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLR 123 >gi|301155678|emb|CBW15146.1| DNA-binding response regulator in two-component regulatory system with CpxA [Haemophilus parainfluenzae T3T1] Length = 234 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L +++ +G+ NG EAL+ ++++D+ + ++G Sbjct: 1 MSKILLVDDDIELTDLLAEVLRLTGFEVEIANNGQEALDKLNSSH-QLVLLDVMMPVLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+I++ +PV+ +TA + D + G + Y+ KP + + IK + Sbjct: 60 IETLKKIRQ---TSNVPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1] gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K VM+VED L RD +E +G+ +G +A +Q KP+++++D+ + + G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMVLDLMVPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++E S ++P+I VTA + D G + Y+ KP S + ++ + Sbjct: 61 LTICRKVREQS---DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+E + R + GY +NG E L + PD+II+D+ + ++ G E+ Sbjct: 5 ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVDGFEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E +PV+ +TA + + G + Y+ KP +L + ++ + Sbjct: 65 CRRLREGGST--VPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRR 120 >gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|240143855|ref|ZP_04742456.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] gi|257204143|gb|EEV02428.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] Length = 195 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL RD + Y L+ +G AL++ ++ +II+D+ + +++G Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEAALDIFYQEKNIALIILDVMMPKMNGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+E ++P+I +TA + DE + G + YISKP S I + + + Sbjct: 65 EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D +L +K + +E +G EA E + + D++++DI + +G Sbjct: 1 MKKVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMIPVYTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++E +P+I +TA D+ + G + YI+KP ++ IK + Sbjct: 61 IEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|319783843|ref|YP_004143319.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169731|gb|ADV13269.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 123 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 96/123 (78%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKVMIVEDNELNMKLFRDLIE SGY ++TRNG+EAL+LARQH+PD+I+MDIQL E+S Sbjct: 1 MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRNGLEALDLARQHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|298675086|ref|YP_003726836.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] gi|298288074|gb|ADI74040.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] Length = 296 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D ++L D + GY + NG EA+ + DVI++D+ + +I+G E Sbjct: 9 KILIVDDEPELVELLADYL--DGYNTIAAYNGQEAINIIESDNIDVILLDVMMPDINGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + IK D L IPV+ +TA + ++ G + +++KP+ ++ + Sbjct: 67 VCTHIKNDDSLNYIPVLMITALSDHDNKIHGLDSGADDFLTKPVDGEELNARVRSALR 124 >gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + ++ GY +G+ L AR+ PD+I++D L IS Sbjct: 1 MAAHILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K++++ ++P+I +TA D G + YI KP SL + ++ + Sbjct: 61 GLEICKRLRQTGN--KVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|153808930|ref|ZP_01961598.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185] gi|149128263|gb|EDM19482.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185] Length = 1384 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++EDNE + L L+ Y NG E + + D+I+ D+ + E+ G+E Sbjct: 1129 ILVIEDNEELLHLMTKLLRHE-YNVFTAENGKEGIAVLENEDIDLIVSDVMMPEMDGMEF 1187 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K E+ IPVI +TA + D + G +A+ISKP +L++ I+ + Sbjct: 1188 CKYVKGKLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLL 1243 >gi|28868988|ref|NP_791607.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852228|gb|AAO55302.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331016879|gb|EGH96935.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 783 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 720 QATRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRAELAGILDQWI 777 >gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 253 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D ++ ++ SGY + +G EALE+ PD++++D+ L ++ G Sbjct: 11 ATILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLPKLDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 71 AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRR 127 >gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1134 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + L+ Y +G EAL A + P +I+ D+ + + G Sbjct: 636 RILLADDNPDMREYVERLLRDR-YDVTAVASGEEALHAAISNPPGLILSDVMMPGLDGFG 694 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K+++E E + IP+I V+A A + G + Y+ KP + + + ++ Sbjct: 695 LLKELRERPETRTIPLILVSARAGEESRVEGLGAGADDYLIKPFTARELLARVGAHL 751 >gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 226 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 + K+++V+D+ +L + +E +G L+ +G+EAL + Q D+++MDI + + Sbjct: 1 MAKILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASVDLVVMDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ ++ IPV+ +TA + + G + Y+ KP + + +K + Sbjct: 61 GWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++VED+E K+ + Y +G + E D+I++D+ L +++ Sbjct: 1 MM-RILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLPKLT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++I++ IPV+ +TA D+ G + Y+ KP + + I+ + Sbjct: 60 GIGLCQRIRQSGYT--IPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML+K++IV+D + + +D E GY + NG EA+E + D+I++DI + I Sbjct: 1 MLEKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQVCQKIR---DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittHH] gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittHH] Length = 231 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED ++ + Y ++ + A+ +++ P +I++D L S Sbjct: 1 MTRKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ + IK+ IP+I +TA + + D G + YI+KP S I + I+ Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L +D +E S + G LE A + D+II+D+ L + G Sbjct: 1 MSRILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I+E +++P++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEVCKHIREK---KDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+EL + + + Y +G E EL D+I++D+ L ++ G+ Sbjct: 2 KILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLPKLDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++P++ +TA D+ G + Y+ KP I+ + Sbjct: 62 LCQRLRSQGH--QMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRR 118 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +VM+V+D+ + + R L+E G + + + EL PD++I+DI++ +ISG Sbjct: 512 ARVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGT 571 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ DS +P++ +TA + ++ G + ++SKPI + I + Sbjct: 572 ELCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLER 631 Score = 45.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 10/120 (8%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI-----S 60 +IV+ + K T G+ N A PD+++++ I Sbjct: 390 LIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKIGLKSPDLVLLE---PAIFPTAAE 446 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 L + ++K+ + IP I T + + G ++ K + S ++ I + + Sbjct: 447 SLTLLAELKKHA--PPIPAIIFTERDDLTTRLEVARLGEHTFLPKSVPPSQILDAINQVL 504 >gi|119485362|ref|ZP_01619690.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457118|gb|EAW38244.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 372 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D N+ L + +E G+ + +G ALE P+++++D+ + E+ G E+ Sbjct: 12 ILAVDDLPDNLFLLKLALEQEGHNVVLVEDGKTALEQIEASPPNLVLLDVMMPEMDGYEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 TK+I+ + + IP++ +TA + G + +I KP+ + ++ + Sbjct: 72 TKRIRSNPKYPYIPILLITAH-EQSSVVEGLDAGADDFIRKPVQIDELQARVRSLLR 127 >gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 67/122 (54%), Gaps = 5/122 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ V+IV+D + R + GY L NG++AL++ ++ DVI++D+ L E+S Sbjct: 1 MMVTVLIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA--DVILLDLMLPEMS 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I++ S +P+I VTA + D+ + G + Y++KP S + I+ + Sbjct: 59 GEDVCRKIRQHS---SVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAIL 115 Query: 121 GE 122 Sbjct: 116 RR 117 >gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 64 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2] gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2] gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2] Length = 224 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ +G ++ + D++I+DI + +I+G Sbjct: 1 MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMPKING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ Q IPVI +TA D + G + Y+ KP S IK + Sbjct: 61 LELCRLYRQMFGYQ-IPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] Length = 231 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +++ GY + NG+EALE+ Q K I+MD+ + ++ G++ Sbjct: 5 KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVMMPKMDGIQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 65 AIMHIRE---TSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRR 120 >gi|220907491|ref|YP_002482802.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] gi|219864102|gb|ACL44441.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] Length = 379 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ L + GY R+G+E LE A + P ++I D + I G Sbjct: 1 MFRILVIDDDPTTRLLLSRKLNQQGYGVEVARDGVEGLEQAAKFLPHLVICDWMMPMIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++K D + +TA D + G + ++SKP+ + ++ + Sbjct: 61 LEVCRRLKADPRFATTFFVLLTAKDDIADRIQGLDAGADEFLSKPLEMDELRARVQAGLR 120 >gi|330940352|gb|EGH43458.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. pisi str. 1704B] Length = 187 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 59 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 118 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 119 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 176 >gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G EAL+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRSLRQRS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|311745310|ref|ZP_07719095.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] gi|126577843|gb|EAZ82063.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1] Length = 230 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++VED+ + ++ +E GY R+G E ++ K D+ ++DI + + Sbjct: 1 MSKAKLLVVEDDPNLGDILQEYLEMKGYEPTLCRDGEEGWNKFKKDKYDLCLLDIMMPKK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+IK+ + +P++ +TA K D K G + YI+KP S+ + + Sbjct: 61 DGFTLAKEIKKVQD--NLPILFLTAKNQKDDIIEGLKIGADDYITKPFSMEELLLRVTAI 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 1155 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G I RNG EA+E QH D+++MD+ + E+ G Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1150 Query: 122 E 122 + Sbjct: 1151 Q 1151 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E ELA Q+ PD I++D++L + SGL + Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 824 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP S E + Sbjct: 825 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876 Score = 74.0 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++L + LI +AL L RQ+ D +I+D++L ++ G Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGN 944 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T + +EE Sbjct: 945 ELLKRMTAEDIRAFPPVIVYTGRNLTREEEA 975 >gi|315122068|ref|YP_004062557.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495470|gb|ADR52069.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 123 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 112/123 (91%), Positives = 121/123 (98%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKVMIVEDNELNMKLFRDLIETSGY+++QTR+G+EALE+ARQHKPD+IIMDIQL EIS Sbjct: 1 MPKKVMIVEDNELNMKLFRDLIETSGYMSIQTRSGLEALEIARQHKPDIIIMDIQLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEITKQIKED+ELQ+IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI Sbjct: 61 GLEITKQIKEDNELQDIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Query: 121 GEA 123 GEA Sbjct: 121 GEA 123 >gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 917 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 K+V+IV+D++ N+ + + G + NG+E LE+ + D+I+MDI + ++ G Sbjct: 797 KRVLIVDDDQRNIFALKTALAKQGMTIMTAHNGIECLEMMKNSEPFDLILMDIMMPQMDG 856 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + +L ++P+IA+TA AMK D E+ + G YISKP+ L+ ++ ++ Sbjct: 857 YEAMQKIRGELKLVDLPIIALTAKAMKNDREKCLEAGASDYISKPLDLNQLFSVMRVWL 915 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E + +E GY G +AL+ +H PD+I++D+ L ++ G E Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ +PV+ +T D R G + +++KP L ++ + + Sbjct: 88 VCRTLR--DRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRS 145 >gi|284036190|ref|YP_003386120.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815483|gb|ADB37321.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM 74] Length = 350 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++++EDN++ + +++E SGY NG +ELA +PD+II DI + + G Sbjct: 1 MKNILLIEDNDIIRENTAEILELSGYRVTTANNGKAGIELALVDRPDLIICDIMMPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ L IP I +TA + + D R + G + Y++KP S S + I+ + Sbjct: 61 YGVLHIVNKNPALTGIPFIFLTAKSERDDFRRGMELGADDYLTKPFSESELLSAIESRLN 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|291287962|ref|YP_003504778.1| multi-sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885122|gb|ADD68822.1| multi-sensor signal transduction histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 537 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63 ++IV+D+ N+++ DL+ + + ++G AL++ PD+I++DI + + G E Sbjct: 9 ILIVDDSPENIRVLADLLGSD-FDIKIAKDGATALKILASPPYPDLILLDIMMPGMDGYE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+ + IPVI +TA ++ D + G YI+KP + M I+ ++ Sbjct: 68 VCREIKKSFNTRNIPVIFITAKSLTEDIVLGFELGGVDYITKPFNEKELMARIQTHL 124 >gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] Length = 232 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D E L +++ Y L+ NG +AL+ + D+ I+D+ L +I Sbjct: 1 MAINILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E+ PVI +TA D+ G + YI+KP + + +K + Sbjct: 61 GFDICQKIREN---HHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1559 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN L+ Y +G AL L R KPD+++ DI + + G Sbjct: 637 ARVLLADDNADMRDYVMRLL-REHYDIAAVADGQAALALVRHWKPDLVLADIMMPGLDGF 695 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + ++E Q++PVI ++A A + + G + Y+ KP S + ++ + Sbjct: 696 ELLQALRESPATQQLPVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQL 753 Score = 89.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ L+ G+ + EA LA D++I DI L + SG Sbjct: 1439 RRVLLVEDHAPTRSALESLLVRRGFSVTAAASATEARALAASEHFDLLISDIGLPDGSGY 1498 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ + +E L IA+T + M+ D R R+ G + +++KP+ + + + Sbjct: 1499 DLMAEFRERYGLVG---IALTGYGMEEDVMRSRRAGFKMHLTKPVRIQHLDQALATL 1552 >gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus UQM 2246] Length = 236 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+ED + GY + +G+E L A+ PDV+++D+ L ++GL+ Sbjct: 5 RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNLPGMNGLD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++IP+I +TA + D+ G + Y+ KP + I + +K + A Sbjct: 65 VCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRRA 124 >gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] Length = 224 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ +G ++ + D++I+DI + +I+G Sbjct: 1 MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEPFDLLILDIIMPKING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ Q IPVI +TA D + G + Y+ KP S IK + Sbjct: 61 LELCRLYRQMFGYQ-IPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ + + ++ G E +E AR+HKPDV+++DI L + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++ E + +I +TA + D+ + G + YI KP + IK + Sbjct: 61 LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905] gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905] Length = 265 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++ED+ ++ +D +E GY+ G+E L ++ D++++D L E+ Sbjct: 34 MKVKLLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQPFDLVLVDWMLPEMD 93 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+ +S ++P++ ++A + D+ + G + YI+KP SL + ++ Sbjct: 94 GLTVCQNIRWES---DVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASHL 149 Query: 121 GE 122 Sbjct: 150 RR 151 >gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 241 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + +E G + +G EAL+L R +PD++++DI L + G+++ Sbjct: 14 VLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHLPGMDGIDV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++DS+ PVI VTA A D+ + G + Y+ KP + + ++ + Sbjct: 74 LRAIRDDSQT---PVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 128 >gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 1155 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G I RNG EA+E QH D+++MD+ + E+ G Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWLP 1150 Query: 122 E 122 + Sbjct: 1151 Q 1151 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E ELA Q+ PD I++D++L + SGL + Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 824 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP S E + Sbjct: 825 LQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876 Score = 74.0 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++L + LI +AL L RQ+ D +I+D++L ++ G Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGN 944 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T + +EE Sbjct: 945 ELLKRMTAEDIRAFPPVIVYTGRNLTREEEA 975 >gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 992 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 66/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N ++ R+L+E +G +G AL L + + ++MD+Q+ + GL Sbjct: 648 RRVLVVEDNAINQQVARELLEQAGLSVDVAGDGEHALRLLARERYAAVLMDVQMPVMDGL 707 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ D ++PVIA+TA A+ D E G +I KP+ + +++ Sbjct: 708 ETARRIRSDPAFADLPVIAMTAHALARDREASLAAGMNDHIGKPVDPRELYAVLARWM 765 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISGL 62 +M+V+DN ++++ D++ + + G EAL L + D ++++D ++ + G+ Sbjct: 506 IMVVDDNPTSLRILADMLRSMRFSVTTATGGEEALRLLEGAESDVRIVLLDWKMPGMDGM 565 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+ + + VI VTA+ + G + ++ KP+ S+ +TI +G Sbjct: 566 ECARRIRALALPRPPAVIIVTAYGREEIRHNAENAGVDGFLLKPVGRSVLFDTIAMTVGP 625 Query: 123 A 123 A Sbjct: 626 A 626 >gi|302795646|ref|XP_002979586.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii] gi|300152834|gb|EFJ19475.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii] Length = 862 Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 76/120 (63%), Gaps = 5/120 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60 K+V++VEDN +N K+ L++ G++ + +G+EA+E + D+++MDIQ+ + Sbjct: 728 KRVLLVEDNLVNQKVASRLLQKYGHVVITVSDGLEAVEALKSDHKAYDLVLMDIQMPGMD 787 Query: 61 GLEITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GLE T++I++D S Q+IP+I +TA AMKG ++ + G + Y+ KP + + TI+ Sbjct: 788 GLEATRRIRKDELGSGWQKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 847 >gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 231 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|261867362|ref|YP_003255284.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1] gi|293390893|ref|ZP_06635227.1| transcriptional regulatory protein CpxR [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412694|gb|ACX82065.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951427|gb|EFE01546.1| transcriptional regulatory protein CpxR [Aggregatibacter actinomycetemcomitans D7S-1] Length = 231 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L L++ G+ NG EALEL H D+I++DI + ++G Sbjct: 1 MAKILLVDDDAELTELLAQLLDLEGFQVNVANNGKEALELL-DHSYDLILLDIMMPVLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E KQI+++ PV+ +TA D + G + Y+ KP + + IK + Sbjct: 60 IETLKQIRKN---YSTPVMMLTARGDDIDRILGLELGADDYLPKPFNDRELVARIKAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271] gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271] Length = 231 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++++DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ EIP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 234 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++V+D E +L R +E +GY +NG+E L ++ PD++I+D+ L I G+ Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+IKE +P+I VTA + + + + G + Y+ KP S + ++ + Sbjct: 70 DLCKKIKEK---YSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRR 126 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +L + +G+ + NG EAL LA Q PD++++D+ L ++ G Sbjct: 11 ATLLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+++++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 71 TVTRRLRQIGM--NAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128 >gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L +D +E GY + NG EALE+ Q PD+II D+ + E+ G Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQDVPDMIICDVMMPEMDGY 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q++++ IPV+ ++A D + G + Y+ KP + ++ + Sbjct: 80 TFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137 >gi|332705121|ref|ZP_08425203.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332356071|gb|EGJ35529.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 276 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 60/116 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ + + +G+ +G A+E ++PD+I++D+ + I G E Sbjct: 10 ILVVDDTPTNLSVISQALHNAGFTVAVETDGESAIEQVNYNQPDLILLDVMMPGIDGFET 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + ++IPVI +TA D+ + G YI+KP + ++ ++ Sbjct: 70 CKRLKANPSNRDIPVIFMTALTDTVDQVKGLSIGAVDYITKPFQQDEVLARVRIHL 125 >gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E + L + +GY ++ R+G EA++ R+H D++++D+ + E+ G Sbjct: 1 MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+ +P++ VTA D + K G + Y++KP + + I+ + Sbjct: 61 WETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 232 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 + ++ +I +D L +E GY ++ +G EA+ + D++I+DI + ++ Sbjct: 1 MNRISILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 55/119 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G + E A+ PD+II D+ + +G Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDVMMPRANGYA 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ED +L PVI +TA M D G + YISKP +K I Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 >gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] Length = 256 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EI 59 M K+++VED +L ++ S + +Q + A KPD+I++D + Sbjct: 27 MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 86 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG++ +++K++ +IP+I +TA + ++ G + YI+KP S + +K Sbjct: 87 SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAV 146 Query: 120 IGE 122 + Sbjct: 147 LRR 149 >gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL+ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +++ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ELN ++ Y +G+ A EL + + D+I++D+ L + G+ Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVMLPRLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+ S +++P++ +T ++ G + Y+ KP + ++ + Sbjct: 62 LCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR 118 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV+ V+D+ + + + L+ G + + + E R PD++I+D+++ +G+ Sbjct: 379 AKVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGI 438 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116 E+ + ++ D + E+P++ +T ++ G + ++SKPI + I Sbjct: 439 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 498 Query: 117 KKYIGE 122 K + Sbjct: 499 VKLLRR 504 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ +D+ L + L+E GY G EA+ A PDVI++D+ + ++G E Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWET 1438 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +KE +E + IP++ + + + + R ++SKP+ S + ++++ I ++ Sbjct: 1439 MAMLKESTETKHIPIVICSVYKPTSNHQPSRD--FVDWVSKPVQESYLLHSLRQAIAKS 1495 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ +LF L E + G EA+ L+++ PD++I+D+ L E G Sbjct: 1500 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1559 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122 + +++ L IPV+ +A + E + K G +++K ++ F + + + + Sbjct: 1560 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1619 >gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] Length = 1222 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 74/117 (63%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN +N+ + +++ +G NG+EA++ +++ +++MDIQ+ ++ G+E Sbjct: 969 KILLVDDNAINLFVASEILRKAGCEIDTAGNGLEAIQKVKENPYRMVLMDIQMPQMDGIE 1028 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I++ + P+IA+TA++MK D++R G + YI+KPI + +K ++ Sbjct: 1029 ATAEIRKLNLAYTPPIIAMTAYSMKEDKDRFMVNGMDDYIAKPIKAESLISKVKAWL 1085 >gi|296447289|ref|ZP_06889217.1| response regulator receiver modulated diguanylate cyclase [Methylosinus trichosporium OB3b] gi|296255154|gb|EFH02253.1| response regulator receiver modulated diguanylate cyclase [Methylosinus trichosporium OB3b] Length = 455 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D N+KL + + L NG +AL L R + D++++D + + Sbjct: 1 MTARILIVDDLAANVKLLEARLTAEYFDVLSATNGTDALRLCRDDRCDIVLLDAMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++K D +PVI VTA D R G + +++KP+ + ++ Sbjct: 61 GFEVCSRLKADPATAHLPVIMVTALDQPSDRVRGLDAGADDFLTKPVDEVALLARVRSLA 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 92.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 47/119 (39%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + + + + + EAL A + D+ + + L + L Sbjct: 156 RILLIEDRAASAERIVSALRGL-HEVTIEADPQEALFRAAEGGFDMAAVSLDLSDFDALR 214 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P++ + + R G YI +PI + + ++ + Sbjct: 215 LCSQMRSLERTRALPILIIADLDDRQRILRGLDLGVNDYIVRPIDRNELVARVRSQLRR 273 >gi|254410199|ref|ZP_05023979.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196183235|gb|EDX78219.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1855 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 72/116 (62%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N + D ++ GY + ++G EA++L+++ KPD+I+MDIQ+ E+ GL Sbjct: 1738 ILLAEDNEANTQTLSDYLQGIGYEMIMAKDGKEAVQLSQRRKPDLILMDIQMPELDGLSA 1797 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI+ + IP+IA+TA AM GD E+ G Y++KP++L I + Sbjct: 1798 TQQIRANPRTATIPIIAITALAMSGDREKCLAAGVSYYMTKPVNLKKLATIINALL 1853 >gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 228 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ + + ++ G E +E AR+HKPDV+++DI L + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++ E + +I +TA + D+ + G + YI KP + IK + Sbjct: 61 LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] Length = 223 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D E + + + G+ ++ +G++A+E+ R+ D+IIMD+ + E+ G Sbjct: 1 MSRLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ PV+ ++A + D+ + G + Y+ KP S M + + Sbjct: 61 FSAVREIRK---TSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|119511790|ref|ZP_01630892.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463563|gb|EAW44498.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 378 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ L + ++E GY + NG E + A ++P ++I D + ++GLE+ Sbjct: 4 ILVIDDDISIQTLLKRMLEKQGYKVVAASNGEEGIAQAIAYQPALVICDWIMPGLNGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K++K D L I +T+ D + G + +ISKPI + ++ + Sbjct: 64 CKRMKTDPNLSTTFFIFLTSLDSIADRVKGLDAGADDFISKPIEQNELKARVRAGLR 120 >gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 229 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y L+ R+G EAL L + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRQA 122 >gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D + L ++ Y + NG +AL+ + K D+ I+D+ L ++ Sbjct: 1 MAANILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I +QI+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GFSICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis EO147] Length = 347 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ D ++ GY + +G +AL+ + PDV+++D + ++ G E Sbjct: 37 ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 96 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +IK+D + +PVI +TA R + G Y++KP+ I ++ + Sbjct: 97 CLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 155 >gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++V+D +L +K + +E +G EA+E + + D++++DI + +G Sbjct: 8 MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMIPVYTG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++E +P+I +TA D+ + G + YI+KP ++ +K + Sbjct: 68 IEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILR 124 Query: 122 EA 123 + Sbjct: 125 RS 126 >gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC 12478] Length = 1405 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 56/116 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN + L+ ++ Y +G +AL + R PD++I D+ + + GL Sbjct: 646 ARVLVADDNADMREYLTRLLRSADYRVEAVSDGRQALAVIRAEVPDLVISDVMMPRLDGL 705 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + Q++ D +PV+ ++A A + G + Y+ KP + + + ++ Sbjct: 706 ALVAQLRADPRTAAVPVLLLSARAGQEASVEGLDAGADDYLVKPFAATELLARVRA 761 >gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K+++V+D KL +D + GY ++ +G +A+++ ++II+D+ + ++ G Sbjct: 4 AKILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPKMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+ S +P+I +TA + + DE + + G + Y+SKP S I M ++ + Sbjct: 64 WQVCREIRRHS---TVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] Length = 219 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++++D KL +D + GYI + +G E +E + D++I+DI + +I G Sbjct: 1 MKKILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIYDIVILDIMMPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E+S+ +P+I +TA A + D+ + Y+ KP + + + +K + Sbjct: 61 WSVCRKIREESQ---VPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 885 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN N +L L++ G+ + NG EA+ + + +P +I MD+++ + G E Sbjct: 670 RILVVDDNWTNRQLVVKLLKPLGFEVQEAENGQEAISIWEKWQPHLIFMDMRMPVMDGYE 729 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ IK+ + Q +IA+TA + D I GC+ ++ KP + + E I K++G Sbjct: 730 ATQYIKQHLQGQATVIIALTASVFQQDRTVILSAGCDDFVRKPFRVEVLFEKISKHLG 787 >gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 1397 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N + ++ GY+ NG EAL R+ D++IMDIQ+ E+ GLE Sbjct: 1278 RILLAEDSAVNQLVVTGILSKLGYVVDPVFNGQEALARLREFAYDLVIMDIQMPEMDGLE 1337 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ + ++PVIA+TA AM GD E + G Y+SKPI + IKK++ Sbjct: 1338 ATRIIRDQASAVLRHDVPVIALTAHAMHGDREICLQSGMNDYVSKPIDPPALIGVIKKWL 1397 Score = 94.4 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 ++++V+DN N + R L+ + G + A+E RQ + I+D+++ E Sbjct: 1119 RLLVVDDNAENRNMLRMLLTSWGVRVSEVSCASTAIERLRQAAEEGDPFRIAIIDMEMPE 1178 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I GL + + IK+++ L + ++ + + + D E++R+ G +++ KP+ S T+ + Sbjct: 1179 IDGLMLGRSIKDETALADTALLMMNSIGRRPDNEKLRRSGFFSFLVKPVRQSELYNTVSE 1238 Query: 119 YI 120 + Sbjct: 1239 VL 1240 >gi|288959103|ref|YP_003449444.1| two-component response regulator [Azospirillum sp. B510] gi|288911411|dbj|BAI72900.1| two-component response regulator [Azospirillum sp. B510] Length = 134 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + L++ +G+ R+G EAL PD+I++D + + Sbjct: 1 MKPTILVVDDEPSIVLSLQVLMQRAGFDVRIARDGDEALRSVETFTPDLILLDAMMPKRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + ++ + + +P+I +TA + + ++ G YI+KP S + T+++++ Sbjct: 61 GFDVCQTLRTNPAWKTLPIIMLTARSRDVERQKGLALGATDYITKPFSTRDLLATVRRHL 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|260221594|emb|CBA30315.1| hypothetical protein Csp_C22930 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 433 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 V++V+D N+ L + L+ Y NG AL++ + PD+I++DI + + G Sbjct: 59 TVLVVDDTPENLLLMQSLLRDD-YKVKGANNGERALKIVAGEAPPDLILLDIMMPGMDGY 117 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++IK D + + IPVI +TA + DE G YI+KPIS I + ++ + Sbjct: 118 EVCRRIKADPKARHIPVIFLTAKSQTEDEAFGLSLGAADYITKPISPPIVLARVRNQL 175 >gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL RD + Y L+ +G EAL++ ++ +II+D+ + +I+G Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEKNIALIILDVMMPKINGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++E ++P+I +TA + + DE + G + YISKP S I + + + Sbjct: 65 DVCREVRE---TSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1166 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G L NG + ++ +H D+I+MD+ + E+ G Sbjct: 1037 RTVLVVDDDARNLFALSGILELHGIQVLHAENGRKGIDALAEHPDIDLILMDVMMPEMDG 1096 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ ++P++ VTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1097 YAATAEIRRMPAHADLPIVTVTAKAMPGDREKSLAAGASDYVTKPVDADDLIACVRRWL 1155 >gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis C6786] Length = 345 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ D ++ GY + +G +AL+ + PDV+++D + ++ G E Sbjct: 35 ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 94 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +IK+D + +PVI +TA R + G Y++KP+ I ++ + Sbjct: 95 CLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 153 >gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 242 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D+ +L + +G+ +G +L PD+II+DI L G Sbjct: 6 KHIVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGETLFKLLEGVTPDLIILDIMLPGDDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ S +P+I +TA A D + G + YI+KP + + +K + Sbjct: 66 TICQRLRKSS---TVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILRR 122 >gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis 12P80B1] Length = 240 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 64/126 (50%), Gaps = 4/126 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQE 58 M K+++++ED+ +L D + + Y G L++ + D +I++D+ L + Sbjct: 1 MNKQILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPD 60 Query: 59 ISGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+E+ ++++ +++ + ++P++ +TA D + G + YI+KP + I Sbjct: 61 MDGMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120 Query: 117 KKYIGE 122 + + Sbjct: 121 RAVLRR 126 >gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED+ L R +E GY +G AL+ D +I+D+ L + G Sbjct: 7 MKQILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ + +P+I ++A + + D + G + Y++KP S+ + IK Sbjct: 67 LEICRRIRQM--TRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] Length = 237 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ +G AL+L Q+ ++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 891 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N+ +E+ L NG+ L++ ++H D+I+MDI L E+ G Sbjct: 771 KKVLIVDDDMRNIYATTIALESKQVEVLFAENGLSCLKVLKEHPDVDLILMDIMLPEMDG 830 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E + +++ +P+IA+TA AMK D+++ + G Y+SKP+ L I ++ Sbjct: 831 YETMRALRQMPGFGTLPIIALTAKAMKDDKDKCLEAGASDYMSKPVKLEQLFARIHSWLS 890 Query: 122 E 122 Sbjct: 891 R 891 >gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. CCY0110] gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. CCY0110] Length = 1324 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--------HKPDVIIMDI 54 K+++VEDN + L++ Y +G+EAL L R D+I+ DI Sbjct: 944 AKILLVEDNADMRNYLKRLLDPY-YEVETANDGLEALTLIRNVSDHNNHGAMYDLILTDI 1002 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + + G E+ + ++++SE+Q+IP+I ++A A + + + G + Y+ KP S + Sbjct: 1003 MMPRLDGFELLQSLRDNSEMQKIPIIMLSARAGEEFQIEGLEAGADDYLWKPFSARQLLA 1062 Query: 115 TIKKYI 120 +K ++ Sbjct: 1063 RVKTHL 1068 >gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 232 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 63 GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 226 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D+E ++ ++ G+ +G AL + +PD++++D+ L I G+ Sbjct: 4 AKILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGIDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I+ +S ++P++ +TA + D R + G + Y+ KP + + ++ + E Sbjct: 64 EVCRLIRAES---DVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120 >gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] Length = 227 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED E + +E G+ L+ +G +ELA ++ P V+I+D+ L I G Sbjct: 1 MSKILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K ++E +L +I +I +TA D + G + Y+SKP + + IK I Sbjct: 61 FEVCKILRE--KLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 232 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D+ +L ++ + GY NG EAL+ PD++I+D+ + E+ G Sbjct: 1 MVKLLLADDDARLSELVKEYFDGEGYEVTHAWNGREALDCMAMEMPDIVILDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I+ S +PVI +TA D + G + Y+SKP + + IK + Sbjct: 61 FDTLKHIRAKS---SVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 234 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + + GY + N E LE+ Q + ++++DI + + GLE+ Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEEIHLVLLDIMMPGMDGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E IP+I ++A + D+ G + Y+ KP + +K + Sbjct: 66 CRKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1424 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60 + V++V+D+ N+ ++E G+ L NG + +E+ H PD+ ++MD+ + E+ Sbjct: 1304 RTVLVVDDDARNLFALSGVLELHGFRVLHADNGRKGIEMLLAH-PDISVVLMDVMMPEMD 1362 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G T +I+ + ++P+IAVTA AM GD+E+ G Y++KP+ + +++++ Sbjct: 1363 GYAATAEIRAMPQYADLPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTGDLIARVRRWL 1422 Score = 50.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 51/135 (37%), Gaps = 22/135 (16%) Query: 3 KKVMIVEDNELNMKLFRDLIETS-------------GYIALQTRNGMEALELARQHKPDV 49 ++++++E E L + E + G + EA Sbjct: 1143 RRLLVIE--ERPRGLLTLVAERAVADLAYDSDDPHGGIDIITAVGAQEAASTLAADPCHC 1200 Query: 50 IIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC-E---AYISK 105 +++++ ++ G + + ++ DS L +PV+ T + +E+ + + ++S Sbjct: 1201 VVLELGMRHDEGADFLEAMRGDSALDSVPVLIHTGHRVDLVQEQGLRALAGDRPLDFLS- 1259 Query: 106 PISLSIFMETIKKYI 120 SL E I ++ Sbjct: 1260 --SLDDLRERITLHL 1272 >gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K V+++ED+ +L RD +E +G+ +G L ++ D++I+D+ + +++ Sbjct: 1 MIKSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I+E Q+IP++ VT+ D R G + YI+KP + + +K ++ Sbjct: 61 GFEVCKKIREK---QDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 AR 119 >gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii] Length = 238 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED+ L + + GY G L + D +++D+ L I Sbjct: 1 MSKRILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K+ + + P+I +A + + + G + Y++KP S+ + IK + Sbjct: 61 GLEICKRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|265752180|ref|ZP_06087973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236972|gb|EEZ22442.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1441 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DNE ++ Y ++ NG + LE+ R PD+++ D+ + + G+E Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLELPDLVLSDVMMPCMDGIE 1233 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K++ + IP + ++A + D R + G + YI+KP S I + Sbjct: 1234 LLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLL 1290 >gi|218439149|ref|YP_002377478.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171877|gb|ACK70610.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 384 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 60/116 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY + NG A+ PD+I++DI + ++G ++ Sbjct: 8 ILVVDDTPDNLRLLAAMLSKKGYTVRKALNGQIAIATVHSVPPDIILLDINMPNMNGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D + ++IP+I ++A D+ + G YI+KP + I+ + Sbjct: 68 CQTLKADEQTKDIPIIFISALDDVIDKVKAFNMGGVDYITKPFQGEEVIARIENQL 123 >gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 232 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D++ + + ++ G + ++G++AL L ++ + +I+MDI + ++ G++ Sbjct: 6 VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E ++IP+I ++A + D+ G + Y++KP + + +K + Sbjct: 66 TFKIREK---KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120 >gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 233 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 66 EICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 122 >gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 837 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED E N + R ++E G+ +G A+E + D I+MDIQ+ + G+ Sbjct: 710 RRILLVEDEETNRDVARRMLEKFGWDVTVAADGQAAVEQVFANHFDCILMDIQMPVMDGV 769 Query: 63 EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ E + IP+IA+TA+AM GD E+ G + YISKP + ++K Sbjct: 770 AATRLIRTAVPLGEKRAIPIIAMTAYAMSGDREKFLACGMDEYISKPFEHTDLRAVVEKA 829 Query: 120 IGE 122 + Sbjct: 830 LAR 832 >gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED + ++ G+ G ALE +H D++++D+ L + G Sbjct: 1 MTRVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQIRAKS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] Length = 232 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED+E + + + G+ NG EAL+ D++I+DI + +++ Sbjct: 3 MQKHILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIPKLN 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K I+E + L P+I ++A D+ G + YI+KP S+ F +K I Sbjct: 63 GLEVLKVIREQAAL---PIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVI 119 Query: 121 GEA 123 A Sbjct: 120 RRA 122 >gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42] gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42] Length = 231 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED+ L + + SGY L ++G AL+L D++I+DI + IS Sbjct: 1 MTHRILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLVNDSL-DLVILDIMMPGIS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E + I++ +P++ +TA + D+ G + Y++KP S + + Sbjct: 60 GIETCQHIRK---TSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|124006366|ref|ZP_01691200.1| response Regulator Receiver Signal Transduction Histidine Kinase [Microscilla marina ATCC 23134] gi|123988023|gb|EAY27694.1| response Regulator Receiver Signal Transduction Histidine Kinase [Microscilla marina ATCC 23134] Length = 382 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D N+ + + GY L +G A+E KPD+I+MDI + ++ Sbjct: 9 MKGKILIVDDTPANIGVILSYLRDQGYKMLVAEDGESAIEQVGFMKPDLILMDIMMPGLN 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +K + E +IP+I ++A D+ + + G YI+KP + IK ++ Sbjct: 69 GFETCTSLKANKETADIPIIFMSALNETVDKVKGFQLGAVDYITKPFQQEEVLARIKTHL 128 >gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 223 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D ++ R + GY NG EAL++A + +P +I++D+ + + Sbjct: 1 MSHRILLVDDEVDILEFVRYNLVREGYEVFTAENGAEALKVAAECRPHLILLDMMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+ + L++ V+ ++A +G + G + Y++KPI + + + ++ + Sbjct: 61 GAQTCRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAIL 120 Query: 121 GE 122 Sbjct: 121 KR 122 >gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1100 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED +N L+E G+ + +G +ALE R D+++MDIQ+ + G+ Sbjct: 976 VLLVEDEPVNRISVLRLLEKLGHAVVTAEDGFQALERVRSGTFDIVLMDIQMPGMDGMAA 1035 Query: 65 TKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I++D L +P+IA+TA AMKGD E+ G + Y++KP+ + + + + Sbjct: 1036 TRLIRDDDSLGNKALVPIIALTAHAMKGDREKFLDAGMDDYLAKPVDFTDLVRVLSGLVP 1095 Query: 122 EA 123 A Sbjct: 1096 RA 1097 >gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1375 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 75/123 (60%), Gaps = 1/123 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED+E+++ + ++E SGY ++G A+ D+I+MD+Q+ + G Sbjct: 1249 MHRVLLVEDDEISLHTVKRMLEKSGYAVSTAQDGQIAIGCLSDPDFDLILMDVQMPVLDG 1308 Query: 62 LEITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E TK I+ +IP+IA+TA+AM GD+E+ G YISKP+ ++ E I++ + Sbjct: 1309 VEATKLIRASGASYADIPIIAMTAYAMTGDKEKFLAAGMNDYISKPVDMAALKEVIERVM 1368 Query: 121 GEA 123 +A Sbjct: 1369 EKA 1371 >gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED+ +L + +G+ + G EA+ +H+PD++++D+ L + G Sbjct: 12 ATLLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDFDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ S+ P++ +TA D+ R G + Y++KP SL + I+ + Sbjct: 72 EVARRIRSGSD--RTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRR 129 Query: 123 A 123 + Sbjct: 130 S 130 >gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] Length = 228 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+IVED+E +L + + + Y + NG +A + + +K D+ I+D+ L ++G Sbjct: 1 MERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I K I+ + L+++PVI ++A + D+ G + Y++KP S+ I+ + Sbjct: 61 YDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLR 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|205372857|ref|ZP_03225666.1| DNA-binding response regulator [Bacillus coahuilensis m4-4] Length = 227 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D E L I+ GY + N ALE R+H+ D++++DI + G Sbjct: 1 MYRLLIIDDEEDMQHLIGLYIQNGGYETVFASNSESALEQMRRHEIDLVLLDIMMPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I + ++PVI ++A + D+ + K G + YI KP S + I+ + Sbjct: 61 FQVCEEICSE---YDVPVIFLSAKGEEWDKVKGLKLGADDYIVKPFSPGELLARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|42779728|ref|NP_976975.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217958170|ref|YP_002336714.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229137383|ref|ZP_04265995.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|229194895|ref|ZP_04321678.1| Two-component response regulator [Bacillus cereus m1293] gi|42735645|gb|AAS39583.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217066134|gb|ACJ80384.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228588599|gb|EEK46634.1| Two-component response regulator [Bacillus cereus m1293] gi|228646082|gb|EEL02304.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|324324624|gb|ADY19884.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D++++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIVLLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTIGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 260 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D+ + + +G+ +G AL AR PDV+++D+ L + GL Sbjct: 32 AHVLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLMLPGLGGL 91 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ D + P+I +TA + D + G + Y++KP S + + + Sbjct: 92 EVCRALRADGDRP--PIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRR 149 >gi|291572094|dbj|BAI94366.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 378 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 63/120 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ + +L + ++ GY + NG E +E A++ +P ++I D + ++G Sbjct: 1 MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +Q+K EL +T+ D + G + ++SKPI ++ ++ + Sbjct: 61 IEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLR 120 >gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 243 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED E +L R ++ +G+ + A + + P ++++D L +GL Sbjct: 9 RVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNGLA 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ E +++P+I +TA +GD + G + Y++KP S + + + + Sbjct: 69 WCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRRS 128 >gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1629 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I EDN +N KL ++E GY A NG E +E + D+I+MD+Q+ E+ GL Sbjct: 1346 RILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALKSKTYDLILMDVQMPEMDGLT 1405 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I ++ L+ +IA+TA AMKGD E + G + Y+SKP+ + + K+ Sbjct: 1406 ATRYICQNWPRLERPFIIAMTANAMKGDREACLEAGMDDYLSKPVRFDDLQKALDKW 1462 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K +IV+DN N ++ T G + +G ALEL DV I+D + E+ G Sbjct: 1200 KHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHSGMHFDVGILDFHMPEMDG 1259 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 L + ++++ + Q++P++ +T+ + G A+++KPI S + + Sbjct: 1260 LMLAMELRKLPQTQDLPLVMLTSAGNRETVSETVGVGFSAFLNKPIKQSQLYDVL 1314 >gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 + KV+I+ED E ++ +G+ L+T NG EAL L + D+ ++D+ + I Sbjct: 1 MSKVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E +E I +I +TA + D+ G + ++SKP S + + ++ + Sbjct: 61 GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1767 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 77/119 (64%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1424 KRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLEQQSFDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+ +++ EL E+PV+A+TA AM GD+E + G +I+KPI +++ +T+ KY+G Sbjct: 1484 QATQALRKRPELTELPVVAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLG 1542 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +DN + R +E+ G+ R+G EA+ Q + V ++D ++ + G+E Sbjct: 1284 ILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCIQQEYAVALIDWKMPNLDGIET 1343 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 KQIK+ ++ + ++ V+A A + +I + G YISKPIS S ++ I +G A Sbjct: 1344 AKQIKQQAK-KAPRILMVSAHANQDFLSQIEELGLAGYISKPISASRLLDGIINSLGRA 1401 >gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +PV+ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|255263715|ref|ZP_05343057.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Thalassiobium sp. R2A62] gi|255106050|gb|EET48724.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Thalassiobium sp. R2A62] Length = 149 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I +D+ + R +E + + ++ +G AL+ +H PD+I++DI + E+ G Sbjct: 1 MSRILIADDDATIRDVLRIALEQAHHDVVEVADGAAALDAVSEHAPDLIVLDIGMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++++ PV+ +TA + + D + G + Y++KP S + IK + Sbjct: 61 LQVCQELR---RTHATPVLFLTARSDEIDRIVGLELGADDYVTKPFSPREVVARIKAILK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1896 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +K+++V+D+ N+ ++E + NG +A+EL + H + ++MDI + E+ G Sbjct: 1776 RKILVVDDDARNIFALTTMLENYEMEVISAMNGRQAIELLQSHGEIGAVLMDIMMPEMDG 1835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I++D +P++A+TA AMKGD ++ G YI+KP++ + + ++ ++ Sbjct: 1836 YETMREIRKDPRFSTLPILALTAKAMKGDRDKCLAAGASDYIAKPVNTNELLSLLRVWL 1894 Score = 99.0 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVEDN + L+ + G EALE D ++D++L ++SG Sbjct: 1630 KRLLIVEDNAIERDSIVQLLAHDDIEIVTAGTGAEALEQLLDRPVDCCVLDLRLPDMSGF 1689 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +++ + L+E+PV+ T + +EE K ++ + K + S + Sbjct: 1690 ELLDRVQREPALREVPVVVFTGKDLSTEEEHRLKTVAKSVLVKDVQSPERLFD 1742 Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+ ++ L G+ + G AL LARQH+P I +D+ L ++ G Sbjct: 1509 TLLIVEDDPHYARVLLGLARERGFKGIVATRGAAALALARQHQPTAITLDVLLPDMLGWT 1568 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYI 120 + +K D + IPV ++ ++ + G AY KP + + IK+Y+ Sbjct: 1569 VLNNLKLDPATRHIPVQIIS---VEEERSHALAHGAFAYTVKPTTTEGLQQCFDRIKRYV 1625 >gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 312 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ D ++ GY+ + +G +AL+ + PDV+++D + ++ G E Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +IK+D + +PVI +TA R + G Y++KP+ I ++ + Sbjct: 62 CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120 >gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|237726665|ref|ZP_04557146.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435191|gb|EEO45268.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1441 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DNE ++ Y ++ NG + LE+ R PD+++ D+ + + G+E Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLELPDLVLSDVMMPCMDGIE 1233 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K++ + IP + ++A + D R + G + YI+KP S I + Sbjct: 1234 LLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLL 1290 >gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 227 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 56/122 (45%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + +E SG+ N EL +Q PD++I DI + E+ Sbjct: 1 MTGHLLLVDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELLQQRIPDLVISDIMMPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + Q++ED +P++ +TA M D G +AY+SKP + + + Sbjct: 61 GYQFLAQLREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLL 120 Query: 121 GE 122 Sbjct: 121 TR 122 >gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1989 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ L+E + NG + + D+++MD+ + + G Sbjct: 1870 KKVLVVDDDVRNIFALTSLLERHRMQVIPAENGAAGIAYLQNTPDIDLVLMDVMMPGMDG 1929 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K I++ + +P+IA+TA AMKGD ++ G YI+KP+ + ++ ++ Sbjct: 1930 YETMKTIRKIPQFHSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1988 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I+ED+ +L +++ G+ L L + ++H P +I+DI L SG Sbjct: 1598 RTIVILEDDINFARLLLEVVREQGFKGLIAMRCSSGLAMIQKHHPCAVILDICLPGDSGW 1657 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119 + +IK D + IP I ++ R +K G Y KP+ + I K++ Sbjct: 1658 TVLDRIKHDPYSRHIPAIIMSVKDE---RYRGQKLGAYRYYQKPMIKEKLTQIIVDLKQF 1714 Query: 120 IGE 122 I Sbjct: 1715 IER 1717 Score = 37.0 bits (86), Expect = 0.79, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 11 NELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLEITKQI 68 +E + RD+I +S +E Q K D +++D +L + L + ++ Sbjct: 1728 DEGLLTDLRDIIGSSDVRIDTANTIAAGIERISNTQDKIDCVVLDAKLPAMDNLAVFEEQ 1787 Query: 69 KEDSELQEIPVIA 81 + + +E+P++ Sbjct: 1788 LQSLKNRELPIVI 1800 >gi|167950458|ref|ZP_02537532.1| Response regulator receiver [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 283 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MLKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K+ +I++D+ KL + SG +G + +A+Q +PD+I++D+++ Sbjct: 1 MSDKINVLIIDDDRFVQKLISKTLAASGLSTRTADDGESGIAIAQQEQPDLILLDVEMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I+G E+ +++ E Q+IPV+ +++ + + + G + Y+ KP + I Sbjct: 61 INGYEVCDRLRSLPETQDIPVVFLSSHGTLRERLQGYEVGADDYLVKPFEAEHLLARINV 120 Query: 119 YIG 121 + Sbjct: 121 LMR 123 >gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|325273777|ref|ZP_08139968.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101090|gb|EGB98745.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 210 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 55/121 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ +L + + SG+ +G D++I+D+ L + G Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGAGFRRALDSSPCDLVILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P+I +TA + + D + G + Y+ KP S +K + Sbjct: 66 SLCRWVRQHPRRARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARLKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|281209484|gb|EFA83652.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1067 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 5/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+DN +N ++ ++++ G +GMEAL+ + D+I +DI + + G + Sbjct: 936 RVLVVDDNMVNRQVAYKMLQSMGCNVDVVSSGMEALDRIEKVTYDMIFLDIMMPGMDGFQ 995 Query: 64 ITKQIKEDS-----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +TK+I+E + IP+IA+TA A K DE + G + Y+SKPI ++ F + K Sbjct: 996 VTKEIRERELKRSNGTKHIPIIAMTANAFKEDEVKCINSGMDDYLSKPIKITEFRLLMSK 1055 Query: 119 Y 119 + Sbjct: 1056 W 1056 Score = 36.6 bits (85), Expect = 1.1, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V+++E N + T + +A+ + II+D+ Sbjct: 784 RVLLIERNANQRNFLTQQMGVWNIFLDSTDDVNDAIVMCEHAIAMLRPYSFIIIDLATVG 843 Query: 59 ISGLEITKQIKEDSELQE--IPVIAVTAFAM--KGDEERIRKGGCEAYISKPISLSIFME 114 L + +++ E S+ + +I + M EE RK G ++KPI +S+ ++ Sbjct: 844 NDALLLAQKLTEQSKASGHMLQLILLVPLKMRSPQLEEEARKSGFGEIVTKPIRMSVLLD 903 Query: 115 TIKKY 119 ++K Sbjct: 904 SLKSL 908 >gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3] gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3] Length = 231 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++++DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEMRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] Length = 1611 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNELN + ++L+ +G NG EA+ + + DV++MD+Q+ + G Sbjct: 1272 VLLVEDNELNQIVAQELLRDAGMHVDVASNGQEAIACIDRRRYDVVLMDMQMPVMDGETA 1331 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+Q++ D +P+IA+TA AM+ D ER G ++ KPI + T+ +++ Sbjct: 1332 TRQLRADPRHAGLPIIAMTANAMQADRERCFAAGMNDHVPKPIDPDVLWATLVRWL 1387 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 68/126 (53%), Gaps = 7/126 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 +V++V+DN ++ D+++T G A Q +G++AL+ R Q ++++D + Sbjct: 1125 RVLVVDDNHTAAQVLVDMLQTMGLQATQVHSGVQALQALRDAVAEQRPYGLLLLDWHMPG 1184 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E+ ++I+ L IP ++ VTA + R G + + KP+S S+ +T+ Sbjct: 1185 MDGIELARRIRGLG-LAHIPQMLMVTAHGRDEVMDAARSAGIDNVLVKPVSASVLFDTLM 1243 Query: 118 KYIGEA 123 + + +A Sbjct: 1244 QPLAQA 1249 >gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli GR56] Length = 231 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + +E G + R G EA+ R+ D+II+DI + ++ Sbjct: 1 MAPRILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGNIDLIILDIGMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +QI++ +P++ ++A + D + G + Y++KP S + +K + Sbjct: 61 GLEVCRQIRQ---TSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAIL 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L] gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 233 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 66 EICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 122 >gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED L +D +E SG+ +G L A D+ I+D+ L I G Sbjct: 1 MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+E + P++ V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICKQIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB] gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 243 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + G+ +G + +L + +I++D+ + GL Sbjct: 9 HILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLMMPGEDGLT 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + P+I +TA + D + G + Y+ KP + + I + Sbjct: 69 ICRRLRGQGD--QTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRR 125 >gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I +DN+ + + + + + + +G AL+ +++ D+I++D+ + + G Sbjct: 1 MYKVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +Q++ +P+I +TA ++ + G + YI KP S + I + Sbjct: 61 FDVCRQVR---TFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614] gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ GY NG +AL ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI++ +PVI V+A + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQIRQ---TSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] Length = 221 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VED++ +L + + T Y + +G+E + + D++++D+ + + Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E+ K I+ S IP+I +TA + D+ + G + YI+KP S + + ++ Sbjct: 61 NGFEVAKMIRSQS---NIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|330967661|gb|EGH67921.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1170 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATTEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 77.9 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED++L LI +AL+L R H D +I+D++L ++ G Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 230 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED +L + G+ A+Q + AL + PD+I++D L SG+E+ Sbjct: 6 ILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRALPDLILLDWMLPGTSGVEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ ++IP+I +TA + D+ + G + YI+KP S M I+ + Sbjct: 66 ARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRAVLRR 123 >gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1322 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 62/117 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN +N+ + ++ GY +G AL+ PD+I++DI + +++G E+ Sbjct: 13 ILVVDDNPVNLVILSKVLSKYGYKVRSAPDGEMALKSVEAKLPDLILLDIMMSDMNGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++K + + ++IPVI ++A D+ + G YI+KP + ++ + Sbjct: 73 CNRLKTNEKTRDIPVIFISALEEPLDKVKAFTLGGADYIAKPFQTQEVIARVENQLR 129 Score = 134 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVE+ + + +L+ G+ NG E +EL ++ +P +I MDIQ+ ++G E Sbjct: 1104 RLLIVENQWESQQFLAELLVPLGFEVYTAENGQEGVELWQRCQPHLIFMDIQMPVMNGYE 1163 Query: 64 ITKQIKEDSE------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T++I+ LQ +IA+TA A + I GC+ +I KP + + Sbjct: 1164 ATQKIRAMEMNNLTDILQPTKIIALTASAFEEQRTYILSIGCDDFICKPFREEFLLNKLA 1223 Query: 118 KYIG 121 +++G Sbjct: 1224 EHLG 1227 >gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ +L ++ Y R+G EAL L ++ K D+I++D+ L +++ Sbjct: 1 MQKRILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKVN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+E ++PV+ ++A D+ G + YISKP S+ ++ I Sbjct: 61 GMELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + L + G+ + N +A + D+ I+D+ L +++ Sbjct: 1 MQDKILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVMLPDMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E + PVI +TA D+ G + YI+KP + +K + Sbjct: 61 GFELCQKIREKYQY---PVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|167645462|ref|YP_001683125.1| response regulator PleD [Caulobacter sp. K31] gi|167347892|gb|ABZ70627.1| response regulator receiver modulated diguanylate cyclase [Caulobacter sp. K31] Length = 454 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y +G AL +A PDVI++D+ + + Sbjct: 1 MSARILVVDDIEANVRLLEAKLSAEYYQVSVAYDGPTALAMAADELPDVILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++KED + IPV+ VTA + D + G +++KPI + ++ Sbjct: 61 GFTVCRKLKEDPTTRHIPVVLVTALDGRADRIAGLEAGASDFLTKPIDDVMLFARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+DNE + + + + + ++A +++ D++I++ + GL Sbjct: 155 RVLVVDDNERQAQRVAAELAVE-HRPVVESDPVKA-QISAGGPVDLVIINAAAKGFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ D + +P++A+ + + + G + +PI +K I Sbjct: 213 FAASLRSDERTRHLPILAMVDTDDRPRLVKALEIGINDILPRPIDPQELSARVKTQIQR 271 >gi|152986132|ref|YP_001349017.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] gi|150961290|gb|ABR83315.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa PA7] Length = 651 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 67/117 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++ + GY +G++A+ A + + D I+MD +L + G Sbjct: 517 ILLVEDNPVNQTVIEAMLRSLGYRVTLVADGIQAVRHAERQQYDAILMDCRLPVLDGYAA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ +++P+IA+TA A++GD E G Y++KP + ++++IG Sbjct: 577 TREIRAQENGRQVPIIALTANALQGDRENCLHAGMNDYLAKPFKRAELQRILQRWIG 633 >gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614] gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614] Length = 226 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + +E G+ +G EAL A + DVI++D+ L ++G E Sbjct: 2 RVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E P++ +TA + DE G + Y++KP S I + I+ + Sbjct: 62 VCRRLREREVW--TPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRR 118 >gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931] gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931] Length = 228 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED E L+ G+ + NG++A+ + PD++++D+ L +SG Sbjct: 1 MTKILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K+I+ S +P+I +TA + D+ + G + Y++KP S M I+ + Sbjct: 61 MEVCKKIRASS---SVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218131895|ref|ZP_03460699.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697] gi|217986198|gb|EEC52537.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697] Length = 1239 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + + +G +A E+ + +PD+++ D+ + + G E Sbjct: 995 HILIVEDNHALREFMVHPL-REHFRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDGFE 1053 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK E IPVI +TA + K ++ + G + Y++KP +++ I I Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIR 1111 >gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 248 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D ++ + GY +G+EAL++ PD+II+D+ + ++ G + Sbjct: 15 ILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQCPDLIILDVMMPKLDGYGV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ +P+I +TA + D + G + Y+ KP S ++ + Sbjct: 75 CQAVRK---TSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRR 129 >gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 225 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ + +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCKKMR--TSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 914 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 74/124 (59%), Gaps = 2/124 (1%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++VEDN +N ++ ++E +G+ +G+ ALE ++ DV+ MDIQ+ + Sbjct: 660 MGKARVLLVEDNLVNQRVAVRILEKAGHTVHVAGDGLVALEAVKKDNYDVVFMDIQMPGM 719 Query: 60 SGLEITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G T I++ E+P+IA+TA AMKGD E+ G + YISKP+ ++ +++ Sbjct: 720 DGYAATATIRKMAPRFSELPIIAMTAHAMKGDREKCIASGMDDYISKPVKPKGLLKMVQR 779 Query: 119 YIGE 122 + G+ Sbjct: 780 WAGK 783 Score = 114 bits (287), Expect = 5e-24, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 V+IV+DN N + + + G + +G EA+EL Q D +++D Q+ E Sbjct: 510 HVLIVDDNATNRTILNKTLVSFGCFPEEAESGGEAMELLAQRMAEGRPFDAVLLDHQMPE 569 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + + I+ + ++ +T+ +GD R + GC AY++KP+ S+ ++ + + Sbjct: 570 MDGEAVVRAIRSKPGNENTRILILTSVGERGDARRFKDLGCCAYLNKPVRQSLLLDALAE 629 Query: 119 YI 120 + Sbjct: 630 TL 631 >gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7] gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7] Length = 233 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + + + NG+EALE +P++I++D+ L +ISG Sbjct: 2 KILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFELVQPNLIVLDLMLPDISGTV 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++I++ ++P+I +TA + + D + G + YI KP S + ++ + + Sbjct: 62 ICQKIRK---TSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRS 118 >gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10] gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516] gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F] gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola] gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003] gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10] gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516] gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F] gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola] gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004] gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038] gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003] gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 235 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I EDN +++ GY + NG++AL L RQ +PD II+DI + E+ G + Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + P+I ++A + D + G + YISKP + IK + Sbjct: 62 VCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118 >gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 238 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E + +E GY + +G++A+EL +H D++++D+ L + G Sbjct: 1 MTRILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ ++PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRRLR---LTSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D ++ + G+ L NG EALEL R +PD++++D+ + E+ G Sbjct: 14 KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGFA 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ SE +P+I +TA D + G + Y+ KP S I+ + A Sbjct: 74 VVERIRAQSE---VPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRA 130 >gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides fragilis 638R] Length = 224 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ +G E RQ D++I+DI + +++G Sbjct: 1 MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ PVI +TA D + G + Y+ KP S IK + Sbjct: 61 LELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 225 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 61/118 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L +D +E GY + NG EALE+ PD+II D+ + E+ G Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHEVPDMIICDVMMPEMDGY 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q++++ IPV+ ++A D + G + Y+ KP + ++ + Sbjct: 80 TFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137 >gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED+ + + G+ G + + R+ PD++++D+ L I G E Sbjct: 4 VLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLMLPGIDGFET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + +P+I +TA + D + G + Y+ KPI + I+ + Sbjct: 64 CRRIRALGQ---VPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRR 118 >gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR5-3] gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR5-3] Length = 236 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++V+D + R +E Y L+ N +A + +PD++++D L SG+ Sbjct: 4 RTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGGSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D +EIPVI +TA + + + + G + Y++KP + + IK + Sbjct: 64 ELLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMTKPFAPRELIARIKALLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|153805826|ref|ZP_01958494.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185] gi|149130503|gb|EDM21709.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185] Length = 1376 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + R+ Y + +G EAL+ + PD+II D+ + ++G+E Sbjct: 1133 TILLVDDNHEILMILREYFVKD-YNIIMAIDGQEALDKCNRSLPDIIISDVMMPRMNGIE 1191 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +K++ + IP+I +TA + D+ + G +AYI KP + + ++ + ++ Sbjct: 1192 LCATLKKNLQTCFIPIILLTAKSQVEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNKS 1251 >gi|289679969|ref|ZP_06500859.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. syringae FF5] Length = 182 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 54 RSILLVEDNPVNRTVVQAMLRNLGCEVDIAVDGAEAVAKASAGNHALILMDCRLPVMDGY 113 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 114 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 171 >gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1159 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+ + R L++ GY L + +G +AL Q D+I++D+ + +SG ++ Sbjct: 752 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPVDLILLDVMMPTLSGFDV 811 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---- 120 +++++ +++PV+ +TA D E G Y+ KP ++ + Sbjct: 812 CRRLRQQHPKEKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVRALLEASA 871 Query: 121 GEA 123 G A Sbjct: 872 GRA 874 >gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1211 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +K++IV+D+ N+ +E+ L NG + +E + + ++++MDI + E+ G Sbjct: 1091 RKILIVDDDLRNIFALTSFLESYQMQVLFAENGRDGIERLQTNPDINIVLMDIMMPEMDG 1150 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I++ + + +P+IA+TA AM GD E+ + G YI+KP+ + ++ ++ Sbjct: 1151 YETTRAIRQQQQFRSLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 1209 Score = 110 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 4/114 (3%) Query: 4 KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ I+ED+E ++ D+ G+ A+ + L LA+Q KPD I++DI + E+ G Sbjct: 823 RILLIIEDDEKFARILLDMAREQGFKAIVALQSKQGLALAQQFKPDAIMLDIYMPEMDGW 882 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + ++K + + IPV ++ + ++R + G Y+ KP+S + + Sbjct: 883 TVLDRLKHKPDTRHIPVHILS---VDERQQRGLQLGAITYLQKPVSPEALTQVL 933 Score = 83.6 bits (207), Expect = 9e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IVED+ + + +LI + G EAL + R D +++D+ L ++SG Sbjct: 945 RNLLIVEDDPVQAQSIIELIGNGDVQSTAVGTGAEALLILRSQHFDCMVLDLGLPDMSGF 1004 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 + +QIK++ L ++P+I T + EE +G E I K + S ++ Sbjct: 1005 ALIEQIKQEPRLLKLPIIVYTGKELSRQEETQLRGLAETIIIKNVRSPERLLD 1057 >gi|317474497|ref|ZP_07933771.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909178|gb|EFV30858.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1239 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + + +G +A E+ + +PD+++ D+ + + G E Sbjct: 995 HILIVEDNHALREFMVHPL-REHFRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDGFE 1053 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK E IPVI +TA + K ++ + G + Y++KP +++ I I Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIR 1111 >gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 220 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA + + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ + +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCKKMR--TSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC 35316] gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC 35316] Length = 235 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED+ L R +E GY +G AL L + D +I+D+ L + G Sbjct: 1 MKQILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ + +PVI ++A + + D + G + Y++KP S+ + IK Sbjct: 61 LEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1002 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN L+ + + NG ALE +Q PD+++ D+ + E+ G + Sbjct: 647 RILLVDDNADMRDYVGRLL-SERWQVETAANGAIALERLQQDLPDLVLTDVMMPEMDGFQ 705 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ D Q IPVI ++A A + G + Y+ KP S + ++ + Sbjct: 706 LLQVLRSDPLTQSIPVILLSARAGEVATIAGLAAGADDYLIKPFSARELIARVETQL 762 >gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 249 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ + + G+ G E L +H D++++D+ L G Sbjct: 31 RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGADLVVLDVMLPGPDGFA 90 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ +PV+ +TA D + G + Y++KP + + I+ + A Sbjct: 91 FLRDLRARDA---VPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRA 147 >gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 232 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 63 GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 232 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 5 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 65 EICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 121 >gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC 33656] gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC 33656] Length = 229 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED L +D +E SG+ +G L A D+ I+D+ L I G Sbjct: 1 MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+I+E + P++ V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICKRIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +D + L + +E Y +G AL L ++K D+ I+D+ + +I G+E Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E + +P++ +TA + D+ G + YI+KP S++ + +K + Sbjct: 71 VCRKLREKT---NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126 >gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I+ED++L +L RD +E SG+ NG + L A + D+I++D+ L G Sbjct: 1 MRKILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLMLPSKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+I+ + +EIP++ VTA D+ + G + YI KP S + + ++ Sbjct: 61 FQLCKEIRSN---KEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IVED+E + + ++ + + NG +A E+ KPD++I+D+ L +I+G Sbjct: 1 MEKILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPDING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I K I+ + P+I +TA D+ G + YI+KP + M +K + Sbjct: 61 LNICKSIRTKYKY---PIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603] gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603] gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121] Length = 219 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + + + Y +G L+ A D+II+D+ L I+G Sbjct: 1 MTNILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPNING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +QI++ Q P+I +TA + D+ G + YI KP + + I+ + Sbjct: 61 LEICRQIRQQ---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330875680|gb|EGH09829.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 641 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDN +N + + ++ Y +G EA+ A +I+MD +L + G Sbjct: 513 RKILLVEDNPVNRTVVQAMLHHMDYEVDVAVDGAEAVVKAGTGHYALILMDCRLPVMDGY 572 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E T++I++ S L IP+IA+TA A++GD + + G + Y++KP + + + +++ Sbjct: 573 EATRRIRQLSGLDRIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQKVLLRWLAF 632 Query: 122 EA 123 A Sbjct: 633 RA 634 >gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ ++ + + ++ +G +AL + D++++D+ L I G Sbjct: 1 MARVLVVDDDLTVREVLASYLRAGSHDVVEAGDGEQALRAMSERPADIVVLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ E +P+I +TA + D + G + Y+ KP S + + + Sbjct: 61 LEVCRRLRQAGE---VPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|323138821|ref|ZP_08073885.1| response regulator receiver modulated diguanylate cyclase [Methylocystis sp. ATCC 49242] gi|322395969|gb|EFX98506.1| response regulator receiver modulated diguanylate cyclase [Methylocystis sp. ATCC 49242] Length = 457 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D N+KL + + + NG EALEL R + D++++D+ + + Sbjct: 1 MTARVLIVDDLLPNIKLLEARLSAEYFDVVTATNGPEALELCRDGRCDIVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++K D+ +PV+ VTA D R + G + +++KP+ + ++ Sbjct: 61 GFEVCTRLKADAATMHLPVVMVTALDQPADRVRGLECGADDFLTKPVDELALIARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 93.7 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + + + EAL A ++ +++I+ + L + L Sbjct: 157 RILLVEDRAGSSDRIVAALRDL-HDVEIEPHPQEALFRAAENGYELVIVSLNLTDFDALR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q++ + IP++ + A D R G YI +PI + + ++ + Sbjct: 216 LCSQLRSLERTRSIPILLL---ADLEDRPRILRGLDLGVNDYIVRPIDRNELVARVRTQL 272 Query: 121 GE 122 Sbjct: 273 RR 274 >gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 229 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 69/125 (55%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y L+ R+G EAL L + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117 Query: 121 --GEA 123 +A Sbjct: 118 ESRQA 122 >gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 283 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED L R + GY +G +A+ A + D I++D+ L + G E Sbjct: 31 RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGFE 90 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E PV+ +TA D R G + Y+ KP S ++ + Sbjct: 91 VCRRLREAGRWA--PVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 147 >gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649] gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649] Length = 226 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED L+ GY NG +AL D++++D+ L +SG Sbjct: 1 MTRILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ + +++ S +PVI +TA + D+ + G + Y++KP S + IK + Sbjct: 61 VDVCRALRQRS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 223 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + G+ ++ NG EA++L Q +II+D+ + ++ G Sbjct: 5 KILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E K I++ ++P+I +TA + + DE + G + YISKP S I + ++ + Sbjct: 65 ETCKTIRK---YSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51] gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 263 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 63/107 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D E +L R +E GY L +G EAL + + +P+++++DI L ISGLE+ Sbjct: 40 ILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLPGISGLEV 99 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 QI++ + E+PVI +TA + D+ + G + YI+KP S Sbjct: 100 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 146 >gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 232 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +Q++E + +P++ ++A A D+ G + Y+ KP + M +K + Sbjct: 61 GLEVCQQVREHNNT--VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] Length = 231 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + NG E LEL + D+I++D+ + +++G Sbjct: 1 MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELL-SNDIDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein (two-component), ColR [Azotobacter vinelandii DJ] gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein (two-component), ColR [Azotobacter vinelandii DJ] Length = 227 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN + D +E GY ++G+ L LA + D+I++DI L I G + Sbjct: 2 RILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIMLPGIDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D E P+I +TA D + G + Y+ KP +LS + I+ + Sbjct: 62 VCERLRRD-AGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRR 119 >gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D+ +L ++ G+ +G EAL+L R HK D+ ++D+ L + S Sbjct: 1 MNEKILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVMLPDCS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ PVI +TA D+ G + YI+KP + +K + Sbjct: 61 GFHLCEEIRSHYNY---PVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|116623387|ref|YP_825543.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] gi|116226549|gb|ABJ85258.1| response regulator receiver protein [Candidatus Solibacter usitatus Ellin6076] Length = 125 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 73/122 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VEDNE+N + + G+ +G ++ A KPD+++MD+ L + G Sbjct: 1 MAKVLLVEDNEMNRDMLSRRLMRQGFEVTVAVDGQAGVDAAHSGKPDIVLMDMSLPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+Q+K + + IPVIA+TA AM GD ++ GC+ Y +KPI L +E +++ +G Sbjct: 61 WEATRQLKANDATRAIPVIALTAHAMAGDRQQALDAGCDDYDTKPIELPRLLEKMRRLLG 120 Query: 122 EA 123 EA Sbjct: 121 EA 122 >gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378] Length = 225 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+E ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCKKLR--ISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 221 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ D+II+D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SMPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IVED + L R +E G+ +Q R+G++AL LAR +PD+II+D+ L I GL Sbjct: 4 RTLLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLMLPGIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++ + V+ +TA A + D + G + Y++KP S + ++ Sbjct: 64 EVCHRLR---TFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRR 120 >gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase [Oscillatoria sp. PCC 6506] Length = 315 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++E GY +G +ALE + PD+I++D + ++GLE+ Sbjct: 11 ILVVDDVTENLQLIALILEKRGYETTFATSGKQALERVQTANPDLILLDFMMPHMNGLEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K + ++ EIP+I +TA + + + G YI+KP S + + ++ ++ Sbjct: 71 CEQLKANPDVAEIPIIFLTASHEQEHLIQAFEKGAVDYITKPFSTAELLVRVRTHL 126 >gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 60 GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1] gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1] Length = 234 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G + Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 73 VCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 >gi|111224670|ref|YP_715464.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111152202|emb|CAJ63932.1| response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) [Frankia alni ACN14a] Length = 259 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED ++ R + + G+ +G AL A H PD++++D+ L ++ G++ Sbjct: 18 RILIVEDEPQLLRAMRINLHSRGHEVRTAVDGAHALREAASHPPDLVVLDLGLPDLDGID 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ +P+I ++ D+ G + Y++KP S+ + I+ A Sbjct: 78 VIRGLR---GWTRVPIIVLSGRTSGHDKIAALDAGADDYVTKPFSVEELLARIRAVTRRA 134 >gi|91977507|ref|YP_570166.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91683963|gb|ABE40265.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 121 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 80/121 (66%), Positives = 102/121 (84%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EAL+L R+ PD+I+MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGYEALDLVRKLHPDLILMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLDVTRWIKDDPELRHIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4] Length = 234 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 K+++VEDNE + G+ +G E L + D I++D L + G Sbjct: 2 KILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWMLPGMDG 61 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++I+ + +PVI +TA D+ + G + Y++KP S M IK Sbjct: 62 ITLCRKIR--GVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Burkholderia thailandensis MSMB43] Length = 709 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++V+D N++L +E G L ++G EA+ A+ PD++++D+ + I G Sbjct: 13 QTVLVVDDTPANLELAVSALEADGLEVLVAQSGEEAIRRAQLVVPDLVLLDVMMPGIDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E +++K ++ PVI +TA + D+ G Y++KP + +K ++ Sbjct: 73 ETCRRLKAIDHTRDAPVIFMTALSDVQDKVAGFAAGGIDYLTKPFQIVELAARVKTHLAL 132 Query: 122 EA 123 A Sbjct: 133 RA 134 >gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC 8106] Length = 377 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L + + GY NG AL + PD+I++DI++ + G E+ Sbjct: 13 ILIVDDLPDNLRLLSETLSDRGYEVQCAINGKLALMAVQNAPPDLILLDIKMPGLDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K IPVI ++A D+ + + G YI+KP + + ++ + Sbjct: 73 CAELKSQVSTSNIPVIFLSALDDVFDKVKAFRVGGVDYITKPFQVEEVLARVENQL 128 >gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 227 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q D+I++D+ + + G Sbjct: 5 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 65 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|17228133|ref|NP_484681.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17129983|dbj|BAB72595.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 438 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 57/116 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+++ + + +G+ +G AL+ + PD+I++D+ + I G E Sbjct: 26 VLIVDDTPTNLEVVSETLGDAGFDVAIATSGDRALQQVERRLPDLILLDVMMPGIDGFET 85 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + IP+I +TA + + + G YI KP + + ++ Sbjct: 86 CRRLKANDRTCHIPIIFMTALCDSESKVKALELGAVDYIVKPFYEKEVLARVSTHL 141 >gi|114319830|ref|YP_741513.1| response regulator receiver protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226224|gb|ABI56023.1| response regulator receiver protein [Alkalilimnicola ehrlichii MLHE-1] Length = 123 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + L++ +GY +G EALE + KPD++++D+ + + Sbjct: 1 MPKRILIVDDEANIVLSLEFLMKQAGYEVETATDGDEALEAIERAKPDLVLLDVMMPRKN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+ + ++I V+ +TA + E+ G + YI+KP S ++ +++ + Sbjct: 61 GYEVCETIRASDDWKDILVVMLTAKGRDVEREKGLSLGADDYITKPFSTQEVIDKVRELL 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL J1-208] Length = 225 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|218780205|ref|YP_002431523.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218761589|gb|ACL04055.1| Protein with response regulator receiver domain [Desulfatibacillum alkenivorans AK-01] Length = 305 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 63/118 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D + +L + ++ S Y ++G + LE+ +QH+PD++++DIQ+ + G Sbjct: 6 ILITDDEPMQRELLEEYLKLSHYRVTHAKDGNQCLEMMQQHEPDLVLLDIQMPGMDGFAT 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 QI++ + + PV+ +++ + + + + G + YI+KP + +K + Sbjct: 66 LTQIRKIPAIADTPVLFLSSLDRQHLKVKGLELGADDYITKPFHPPELLARVKASLRR 123 >gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 233 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED +L RD +E + + +G L++A Q D+II+DI L +++G Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 66 EICKQIRA---IKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 122 >gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 245 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E A+Q PDV+I D+ + + G Sbjct: 20 RLLLVDDEPGLRAAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDGYG 79 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + ++++ D L PVI +TA M D + G + YI KP + ++ Sbjct: 80 LLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 135 >gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W] gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W] gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|330875153|gb|EGH09302.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1170 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLDEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATTEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 77.5 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED++L LI +AL+L R H D +I+D++L ++ G Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 217 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E K+ + +E G+ + +G EA+E + V+I+D+ L + G Sbjct: 2 KILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + PVI +TA D+ + G + Y+ KP+S + +K + Sbjct: 62 VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117 >gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185] gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550] gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550] gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185] gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q + D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W] gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M++K ++IV+D+ K+ ++ GY + + +EALE R D+II+DI L + Sbjct: 1 MMQKEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+E +I+E ++P+I ++A D+ + G E YI+KP + M IK Sbjct: 61 MDGIEACLKIREQ---YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKS 117 Query: 119 YIGE 122 + Sbjct: 118 QLRR 121 >gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 235 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I EDN +++ GY + NG++AL L RQ +PD II+DI + E+ G + Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + P+I ++A + D + G + YISKP + IK + Sbjct: 62 VCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118 >gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262] gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262] gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023] Length = 225 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+E ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCKKLR--ISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 224 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ G+ +G ++ + D++I+DI + +I+G Sbjct: 1 MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMPKING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ Q IPVI +TA D + G + Y+ KP S IK + Sbjct: 61 LELCRLYRQMFGYQ-IPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Edwardsiella tarda EIB202] gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Edwardsiella tarda EIB202] gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR [Edwardsiella tarda FL6-60] Length = 232 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L++ G+ + +G +AL + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 232 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 63 GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + ++L R+ + G+ + + NG++AL++A + D +++D+ L + G E Sbjct: 2 RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +++P++ +TA + D R G + Y++KP S S + ++ Sbjct: 62 VARRLRH--KGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR 118 >gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 242 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IV+D+ L + GY +G + D++I+D+ L G Sbjct: 1 MTHVLIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAADLVILDLMLPGEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++ +P+I +TA + D + G + Y++KP S + I+ + Sbjct: 61 LSLCRHLRA---TTSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1] gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V++V+D +L ++ Y ++G ALE +PD +++D+ L ++ Sbjct: 1 MMPRVLVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVATCRPDAVLLDLGLPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQ++ ++PV+ V+A ++ + G + YI+KP S+ M + I Sbjct: 61 GIEVIKQLR---GWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 230 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V++ +D++ ++ GY ++ +G+EAL+ ++ +II+DI + + Sbjct: 1 MTKLTVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEVHLIILDIMMPNM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ T +I+ + + IP+I ++A A GD+ G + Y++KP + +K Sbjct: 61 DGITATFKIRAE---RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] Length = 235 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED+ +L D +E++GY +G +AL + + D+I++D+ L SG Sbjct: 1 MSRILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLMLPGCSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I ++I+++ +IP++ VTA D R G + YI+KP S + ++ ++ Sbjct: 61 YDICRKIRDEI---DIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 215 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++M+V+D+ + L RD +E GY NG++ALEL PD+II DI + E+ G Sbjct: 10 KQLMLVDDDPNLVLLVRDYLEFRGYEVSTAENGLKALELLELQLPDLIICDIMMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+ED IPV+ ++A + D+ + G + YI KP + ++ + + Sbjct: 70 SLVKVIREDPRTGWIPVLFLSAKGLSQDKVKGLNTGADVYIVKPFEPEELVAQVESSLRQ 129 Query: 123 A 123 A Sbjct: 130 A 130 >gi|186685534|ref|YP_001868730.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467986|gb|ACC83787.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 439 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I++D+ N+++ D ++ +GY L +G +E + + PD+I++D+ + I G Sbjct: 8 QTILIIDDHPTNIEVLYDALDQAGYKVLVEMDGWHGIETVKSYPPDLILLDVMMPGIDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--I 120 E +Q+K EIP+I +TA D+ + G YI+KP + I + + Sbjct: 68 ETCRQLKSQQTTCEIPIIFMTALNDTTDKVKGLGLGAVDYITKPFQQEEVLARIGIHLKL 127 Query: 121 GEA 123 A Sbjct: 128 RRA 130 >gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC 23685] gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC 23685] Length = 232 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L++ G+ + +G +AL + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|260463924|ref|ZP_05812120.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] gi|259030299|gb|EEW31579.1| response regulator receiver protein [Mesorhizobium opportunistum WSM2075] Length = 138 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 95/123 (77%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKVMIVEDNELNMKLFRDLIE SGY ++TRNG+EAL+LARQH+PD+I+MDIQL E+S Sbjct: 16 MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRNGLEALDLARQHRPDLILMDIQLPEVS 75 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED +L IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 76 GLEVTKWLKEDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 135 Query: 121 GEA 123 G+A Sbjct: 136 GDA 138 >gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268] gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268] Length = 228 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED ++ K + ++E + Y +G EALE A+ D++I+D+ + +++G + Sbjct: 2 RILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++++ +P++ +TA + D +GG + Y++KP + I + Sbjct: 62 VARQLRKEKNG--LPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR 118 >gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1145 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+ + R L++ GY L + +G +AL Q D+I++D+ + +SG ++ Sbjct: 738 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPVDLILLDVMMPTLSGFDV 797 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---- 120 ++++E ++PV+ +TA D E G Y+ KP +K + Sbjct: 798 CRRLREQHPKDKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVKALLEASA 857 Query: 121 GEA 123 G A Sbjct: 858 GRA 860 >gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp. PCC 8106] Length = 456 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ L ++ GY Q +G AL+ + PD+I++DIQ+ E+ G Sbjct: 12 ILVVDDYLDNLTLLTIILNNLGYQVRQADSGKTALKAVEEKLPDLILLDIQMPEMDGYSC 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K + + ++IP+I ++AF D+ + + G E YI+KP L + ++K + Sbjct: 72 CQQLKANPKTKDIPIIFLSAFNNAVDKVKGFEVGGEDYITKPFLLEEVIARVEKQL 127 >gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum] Length = 2062 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N +L L+E G+ NG++A+ ++ K D+I+MD+Q+ G E Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQLRKFDLILMDVQMPHCGGFEA 1790 Query: 65 TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T QI++ Q P+IA+TA A+ D + + G + YISKPI+ I+KY+ Sbjct: 1791 TAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYL 1848 Score = 49.4 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 12/120 (10%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEIS 60 +IV+DN+ +K+ + ++ G + + N +A + + I +D QL Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQL---- 1647 Query: 61 GLEITKQI-KEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + + +++ + +I + + +G + Y+SKP+S S + + + Sbjct: 1648 GTSLIDMMVEKNMNHCKTKIIMLISGGGQRGYPDSSSNF-ITGYLSKPVSPSEIFDILTR 1706 >gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 312 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ D ++ GY+ + +G +AL+ + PDV+++D + ++ G E Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +IK+D + +PVI +TA R + G Y++KP+ I ++ + Sbjct: 62 CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120 >gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 222 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D ++ R+ E +G+ + NG+ A+E + D +I+D+ + + G Sbjct: 1 MAKILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKVKNTHFDCVILDVMMPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 KQIK + +PVI ++A + D+ + G + Y++KP S + IK + Sbjct: 61 FSTCKQIKSIDQ---VPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLE 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029] Length = 1382 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 57/116 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN + L+ ++G+ +G AL+ AR H PD+++ D+ + + GL Sbjct: 631 ARVLVADDNADMREYLTRLLRSAGHEVRAVADGRAALDAARAHTPDLVVSDVMMPRLDGL 690 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++ ++ D PV+ ++A A + + G + Y+ KP + + ++ Sbjct: 691 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRA 746 >gi|300869424|ref|ZP_07114009.1| hypothetical protein OSCI_4080003 [Oscillatoria sp. PCC 6506] gi|300332554|emb|CBN59207.1| hypothetical protein OSCI_4080003 [Oscillatoria sp. PCC 6506] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDNE N+ ++ GY L +NG EA+ L PD+I+MDIQ+ + GLE Sbjct: 109 ILLAEDNEANISTVSSYLKAKGYRILLAKNGAEAIALTNSENPDLILMDIQMPGMDGLEA 168 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I+ +P+IA+TA AM D +R G Y++KP+ L TI++ + Sbjct: 169 IDHIRSAPNSVNVPIIALTALAMTSDRDRCLAAGANDYLTKPVKLKQLATTIQQLL 224 >gi|209523935|ref|ZP_03272487.1| response regulator receiver modulated serine phosphatase [Arthrospira maxima CS-328] gi|209495607|gb|EDZ95910.1| response regulator receiver modulated serine phosphatase [Arthrospira maxima CS-328] Length = 394 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 63/120 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ + +L + ++ GY + NG E +E A++ +P ++I D + ++G Sbjct: 17 MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTG 76 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +Q+K EL +T+ D + G + ++SKPI ++ ++ + Sbjct: 77 IEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLR 136 >gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W] Length = 223 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL L Q + D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4] gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4] Length = 2062 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N +L L+E G+ NG++A+ ++ K D+I+MD+Q+ G E Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQLRKFDLILMDVQMPHCGGFEA 1790 Query: 65 TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T QI++ Q P+IA+TA A+ D + + G + YISKPI+ I+KY+ Sbjct: 1791 TAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYL 1848 Score = 49.4 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 12/120 (10%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEIS 60 +IV+DN+ +K+ + ++ G + + N +A + + I +D QL Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQL---- 1647 Query: 61 GLEITKQIKEDS-ELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + + E + + +I + + +G + Y+SKP+S S + + + Sbjct: 1648 GTSLIDMMVEKNMNHCKTKIIMLISGGGQRGYPDSSSNF-ITGYLSKPVSPSEIFDILTR 1706 >gi|90424800|ref|YP_533170.1| response regulator receiver domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90106814|gb|ABD88851.1| response regulator receiver domain protein (CheY-like) [Rhodopseudomonas palustris BisB18] Length = 121 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 82/121 (67%), Positives = 103/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EALEL R+ +PD+I+MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSNGYEALELVRKLRPDLILMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLEVTRWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 237 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++I +D++ L + +E Y+ +G AL+L Q+ ++I+D+ + ++ Sbjct: 1 MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++++ + +P++ +TA D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKAL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803] gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|307151036|ref|YP_003886420.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306981264|gb|ADN13145.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 121 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ V++VED +L + +GY + +G EA+E KPDVI+ D+ + ++ Sbjct: 1 MMTTVLVVEDTLSEQELISLYLRKAGYTVITANDGKEAIEKTLAQKPDVIVTDVVMPNMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + IK++ + Q++PVIA T+ D K G + Y++KP + + +K Sbjct: 61 GFELCRSIKKNPQTQKLPVIACTSKTQDLDRLWGMKQGIDVYVTKPFTPEELIRAVKSVA 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 270 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I+ED + D +E G+ G + + LARQ KPD I++D+ L + +G Sbjct: 45 KKILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGVLLARQEKPDAILLDLMLPDTNGF 104 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + ++ +P+I +TA + D+ R G + Y++KP S+ + ++ Sbjct: 105 KVCEDLRRWDAF--VPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFRR 162 Query: 123 A 123 A Sbjct: 163 A 163 >gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 229 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+M+VED+E L R +E GY G EA +++ PD++++D + ISG+E Sbjct: 5 KIMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEAEVRLQENVPDLLVLDWMVPAISGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K E + +P+I +TA + D R G + Y+ KP S F+ ++ + A Sbjct: 65 LCRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRRA 124 >gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 656 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + ++ + GY +G +A++ Q I+MD +L + G E Sbjct: 537 VLLVEDNPVNQTVIEAMLRSLGYQVSLVGDGQQAVQSCSQQDYAAILMDCRLPLMDGYEA 596 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI++ + +++P+IA+TA A++GD E + G Y++KP + + +++ Sbjct: 597 TRQIRQLEQGRQVPIIALTANALQGDREACLEAGMNDYLAKPFKRADLQRILLRWL 652 >gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IV+D + L ++ GY + NG++ALE K D+ I+D+ L +I Sbjct: 1 MSEQILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKMDLAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA D+ G + YI+KP + + +K + Sbjct: 61 GFRICQKIREQYFY---PIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 238 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++V+D+ + R +E G + +G +AL A + PD++++D+ + + Sbjct: 7 MGRYVLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLMMPGLD 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++ L +PV+ +TA + D + G + Y++KP S + I+ + Sbjct: 67 GIEVCRR--LRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVL 124 Query: 121 GEA 123 A Sbjct: 125 RRA 127 >gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +KV++VED+EL + D + + + ++G A+EL H D++++DI + E+ Sbjct: 1 MKRKVLLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSVDLVVLDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +IP+I +TA D+ + G + Y++KP S + + K + Sbjct: 61 GWSVCRKIRQQS---DIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKALM 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|330873088|gb|EGH07237.1| sensory box protein/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 705 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D+ L L++ GY L +G +AL + + PD+I++DI + + G Sbjct: 6 ATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDERAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +K IP+I ++A +G + G E Y+SKP+ + ++ + Sbjct: 66 EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLR 124 >gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 227 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+ IV+D+ ++ +E G+ ++ +G+ AL ++ P +II+D+ L I G+ Sbjct: 5 KKIYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLMLPGIDGM 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++++ +P+I +TA D+ + G + YI KP + +K + Sbjct: 65 TLCKEVRK---FTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRR 121 >gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D++ ++ +E GY + NG+EALEL ++ +IIMDI + ++ GL Sbjct: 3 ILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIMMPKMDGLRA 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IPVI ++A + D+ G + YI+KP + + IK + Sbjct: 63 TMKIREE---KNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRR 117 >gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1078 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +N R L+E +G+ +NG E L+L R+ D ++MD+Q+ +SG+E Sbjct: 954 RLLLAEDEAINQLAMRTLLEKAGHRVSIAQNGQEVLDLLREEDFDCVLMDVQMPVMSGIE 1013 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ EL +++P+IA+TA AM GD E + G + Y+SKP+ L ++ I K Sbjct: 1014 ATRRIRTSPELAARKDVPIIALTAHAMSGDRESFLQAGMDDYLSKPVGLDDLVKAIAKLK 1073 Query: 121 GEA 123 + Sbjct: 1074 SRS 1076 >gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] Length = 244 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I ED + +++ GY ++ +G +AL+ ++++DI + + G Sbjct: 23 MIKILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIMMPKRDG 82 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +I++ L ++P+I +TA + DE + G + YISKP S I + +K + Sbjct: 83 LEVCAEIRK---LSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILK 139 Query: 122 EA 123 A Sbjct: 140 RA 141 >gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + R ++ GY NG L+LA H D++I+D L +SGLE Sbjct: 2 RILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPYLSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I +Q++ + PV+ +TA D G + Y+ KP L + ++ + + Sbjct: 62 ICQQLRSQGKT--TPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRRS 119 >gi|167645461|ref|YP_001683124.1| response regulator receiver protein [Caulobacter sp. K31] gi|167347891|gb|ABZ70626.1| response regulator receiver protein [Caulobacter sp. K31] Length = 127 Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats. Identities = 85/122 (69%), Positives = 105/122 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+E GY LQTR G++AL +AR+H+PD+I+MDIQL EIS Sbjct: 6 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLQALSIAREHRPDLILMDIQLPEIS 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED +L IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F++TI++ + Sbjct: 66 GLEVTKWLKEDDDLSHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLDTIRRLL 125 Query: 121 GE 122 Sbjct: 126 ER 127 >gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1199 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 59/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ L+ GY + NG AL + PD+I++DI + + G E+ Sbjct: 13 ILIVDDQPDNLRVLSALLRKRGYECRRAINGQLALRACNSNPPDLILLDIVMPVVDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 KQ+K + +IPVI ++A ++ + G YISKP + ++ + Sbjct: 73 CKQLKSGEKTCDIPVIFLSAKGEVFEKVKAFAAGGADYISKPFHSEEVLARVEHQL 128 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 68/108 (62%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++V+DN++N + R+L+E G+ ++ +G E L A + KPDVI+MD+ + + G Sbjct: 970 RKVLVVDDNQINRDILRNLLEPLGFEIIEAADGKECLNKAVEFKPDVILMDLVMPVMDGF 1029 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110 E T++++ EL++I ++A++A A + GG + ++ KPI + Sbjct: 1030 EATRRLRYLPELKDIVLLAISASAFDNTKLDFLLGGSDNFLIKPIEVK 1077 >gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268] gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + +L + + GY + N E L++ Q + ++++D+ + ++GLE+ Sbjct: 6 ILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E S IPVI ++A + D+ GG + Y++KP + +K + Sbjct: 66 CRKIRESS---NIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120 >gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 232 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 4/126 (3%) Query: 1 ML---KKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M+ KV++V+D + + ++ + N EA +L Q P+++I DI + Sbjct: 1 MMDTPAKVLLVDDEPGVRESVQAYLQYGDEFEVRTASNANEAWDLLNQEIPELVISDIMM 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++ G + K+++ED+ Q IPV+ +TA M D + GC+AY+SKP I Sbjct: 61 PQVDGYQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALI 120 Query: 117 KKYIGE 122 K I Sbjct: 121 KSLIER 126 >gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured bacterium] Length = 1323 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K +++V+D+ N+ ++E G L +G +A+EL Q+ D+++MDI + E+ G Sbjct: 1204 KTILMVDDDMRNVFALSSILEEKGMQVLIGEHGQDAMELLDQNPDIDLVLMDIMMPEMDG 1263 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +QI++ + + +P+IA+TA AMKGD ++ G Y+SKP+ + ++ ++ Sbjct: 1264 YEAMRQIRQQPKFKTLPIIALTAKAMKGDRQKCIDAGANDYLSKPVDTDKLLSLLRVWL 1322 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 14/126 (11%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ K+ DL G+ L +G L+LA Q+ P I++DI L + G + Sbjct: 939 LIIEDDPNFAKILFDLAREKGFKGLIAGDGAAGLQLAYQYIPSAILLDIALPGMDGWMVM 998 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME----------- 114 +++K++ E + IPV ++ +A + K G Y++KP++L E Sbjct: 999 EKLKQNPETRHIPVHFISVYAQS---LKAMKMGAVGYLTKPVTLETLDEAFTTIEHAISK 1055 Query: 115 TIKKYI 120 TIKK + Sbjct: 1056 TIKKLL 1061 Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVE++E + +L+ + L T+ G +A L + + D +++D+ L +ISG Sbjct: 1058 KKLLIVENDETTSQGMLELLSGADVDILTTQTGEDAYTLLKSDEFDGMVLDLGLADISGF 1117 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI 116 E+ ++I++D+ + +PVI TA + DEE E+ I K + S ++ + Sbjct: 1118 ELLERIRDDTTMSSLPVIVYTAKDLTKDEEMKLTKHAESIIIKGVKSQDRLLDEV 1172 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED +L + +G+ G AL+LA + +PD++++D+ L ++ G Sbjct: 7 ATLLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 IT++++E Q +PV+ +TA D+ + G + Y++KP SL + I+ + Sbjct: 67 TITRRLRERD--QHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 Query: 123 A 123 + Sbjct: 125 S 125 >gi|114798852|ref|YP_760979.1| response regulator PleD [Hyphomonas neptunium ATCC 15444] gi|114739026|gb|ABI77151.1| response regulator PleD [Hyphomonas neptunium ATCC 15444] Length = 455 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N +L + +E + L NG +ALE+A++ P++I++D+ + + Sbjct: 1 MTARILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEVAQRENPEIILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IPV+ VTA + D + G E +++KP+ + I + Sbjct: 61 GYEVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPVDDFLLNSRITALM 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 51.7 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 5/113 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQEISG 61 ++ IV+D+ + + + G+ MEA ++ + DV+I+ + + Sbjct: 155 RIFIVDDDARSSGRLANTLRAQGHK---ATTLMEAGDMGELATERVDVLILSLFARSFDP 211 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 L++ K + + I VI + K R + G I+ PI Sbjct: 212 LKLIAHFKMNPVTRSISVILICDPHDKAKALRGLEIGASDMITIPIDRQELAA 264 >gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 234 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED+ ++ + + SG++ +G L + PD++I+D+ L ++ Sbjct: 1 MTQHLLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDPPDLVILDLMLPDMD 60 Query: 61 GLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++I+ L +IPV+ +TA D + G + Y+ KP + I+ Sbjct: 61 GLEVCRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|312886453|ref|ZP_07746062.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301081|gb|EFQ78141.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1346 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN+ ++ +E S Y + NG + + A PD+++ D+ + + G+E+ Sbjct: 1085 ILLVDDNDDFRNYLKESLEKS-YTVTEATNGKDGWQKALSGHPDLVVSDVSMPVMDGIEL 1143 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK D IPVI +TA + D R + Y++KP S I IK I Sbjct: 1144 CRKIKTDKRTSFIPVILLTALGREEDHIRGLQTEANDYLTKPFSFEILNTRIKNMI 1199 >gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 + KV+I+ED E ++ +G+ L+ +G EAL + D+ ++D+ + I Sbjct: 1 MSKVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E +E I +I +TA + D+ G + ++SKP S + + I+ + Sbjct: 61 GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGYD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 221 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ D+I++D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI+KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++V+D E +L R +E +GY +NG+E L ++ PD+II+D+ L I G+ Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLMLPGIGGM 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+IKE +P+I VTA + + + + G + Y+ KP S + ++ + Sbjct: 70 DLCKKIKEK---YSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRR 126 >gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 243 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ L R + G+ + +G + + D+I++D+ + GL Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++ P+I +TA D + G + Y+ KP + + + + Sbjct: 70 VCRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126 >gi|300866673|ref|ZP_07111359.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335347|emb|CBN56519.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 425 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 61/115 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N+ + ++ + Y +G +AL +H P++I++DI++ + G E Sbjct: 9 ILIVDDNTTNLSVLSQALKAAQYKVRMATDGEDALAQVERHHPELILLDIEMPNMDGFET 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++++ + Q IP+I +T+ A + + G YI+KP S + IK + Sbjct: 69 CRRLQANPTTQGIPIIFMTSLADTEKKVKGLSLGAVDYITKPFEASEVLARIKVH 123 >gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC 8106] gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC 8106] Length = 329 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 69/116 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D N+++ D++E GY +G +ALE A+ +PD+I++D+ + +++GLE+ Sbjct: 10 VLVVDDITRNLQVLADMLEQVGYEVTFATDGQQALERAKVAEPDLILLDLMMPKMNGLEV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D +L EIPVI +TA K K G YI+KP + ++ ++ Sbjct: 70 CQKLKNDEKLCEIPVIFLTASEEKEHLLEAFKQGAVDYITKPFYAPELLARVRVHL 125 >gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 239 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + +V+D+ L + GY +G + + PD++++DI + GL Sbjct: 6 HIAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIMMPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ E+PVI +TA A D + G + YI+KP + + I+ + Sbjct: 66 VCRQLR---TTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRR 121 >gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M++K ++IV+D+ K+ ++ GY + + +EALE R D+II+DI L + Sbjct: 1 MMQKEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+E +I+E ++P+I ++A D+ + G E YI+KP + M IK Sbjct: 61 MDGIEACLKIREQ---YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKS 117 Query: 119 YIGE 122 + Sbjct: 118 QLRR 121 >gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 1307 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ +DN R ++ + + +G AL++AR+ PD++I D+ + + G Sbjct: 653 SARILLADDNADMRMYVRRIL-DARWTVEAVSDGAAALDVARRSPPDLVIADVMMPGLDG 711 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120 + + ++ D + +PVI ++A A + G + Y+ KP S + + ++ Sbjct: 712 FGLLRALRADPVTRCVPVIMLSARAGEESRVEGLAAGADDYLVKPFSARELIARVATHLQ 771 Query: 121 ----GEA 123 A Sbjct: 772 LGEHRRA 778 Score = 118 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 61/115 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+DN ++L + + GY +G AL +A + PDV ++DI L + G Sbjct: 1185 RRILLVDDNLDAVELLAESLGAMGYTTRVAPDGPSALRIAEEFAPDVALLDIGLPVMDGY 1244 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ ++++E + + +IA+T + + D R G E ++ KPI + ++ Sbjct: 1245 ELARRLREQPAGERVRLIAITGYGQEADFRRSEGAGFETHLVKPIQIERLTSLLE 1299 >gi|260777826|ref|ZP_05886719.1| pole remodelling regulatory diguanylate cyclase [Vibrio coralliilyticus ATCC BAA-450] gi|260605839|gb|EEX32124.1| pole remodelling regulatory diguanylate cyclase [Vibrio coralliilyticus ATCC BAA-450] Length = 376 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N L L++ + L G++A+ + +Q KPD++++D+ + E+ G E+ Sbjct: 8 VLVVDDNAENRVLLSGLLKPH-HRVLVATGGVQAINICKQKKPDIVLLDVMMPEMDGYEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ D E +IPVI +TA + DE+R G YI KPIS I + I ++ Sbjct: 67 CERLTSDPETHDIPVIFLTAKSQIEDEQRGFAAGAVDYILKPISPPILISRINTHLR 123 >gi|121998680|ref|YP_001003467.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121590085|gb|ABM62665.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 125 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 67/120 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IV+D + + L++ +G+ ++G +A+E PD++++D+ + Sbjct: 1 MSQEILIVDDEDNIVLSLEFLMKQAGFEVRTAQDGEQAIEALEARIPDLVLLDVMMPRKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ SE +PV+ +TA + E+ G + YI+KP S +ET++ + Sbjct: 61 GYEVCQEIRQRSEWAHLPVVMLTAKGRDVEREKGLAMGADDYITKPFSTQEVVETVQHIL 120 >gi|297565188|ref|YP_003684160.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849637|gb|ADH62652.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 223 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED ++ D + GY + ++G ALEL R +PD+I++D+ L + Sbjct: 1 MSTSILIVEDEIRLAEILEDYLRREGYKTERAKDGGRALELWRVAQPDLILLDLMLPVLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ +S ++P+I +TA + D+ G + Y+ KP S + +K + Sbjct: 61 GLEVARRIRAES---DVPIIMLTARDDEVDKLVGLGLGADDYVVKPYSPREVVARVKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268] gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268] Length = 224 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D E KL +D ++ Y L NG EA++L ++ +II+D+ + ++ G Sbjct: 5 KILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I+E S+ +PVI +TA + + DE + G + YISKP S I + ++ + Sbjct: 65 TALKTIREHSK---VPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|224537165|ref|ZP_03677704.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM 14838] gi|224521220|gb|EEF90325.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM 14838] Length = 1288 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN+ + E Y L+ NG EA EL ++ P++II D+ + ++ G E+ Sbjct: 1043 ILIVDDNKDLRNFLKCSFENQ-YNILEAGNGNEAWELLQKESPELIISDVMMPDMDGFEL 1101 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K IK E IPVI +T+ K D+ G E YI+KP +S+ + IK + Sbjct: 1102 CKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMR 1158 >gi|172036101|ref|YP_001802602.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171697555|gb|ACB50536.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1349 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--------HKPDVIIMDI 54 K++IVEDN + L++ Y +G+EAL L R D+++ DI Sbjct: 959 AKILIVEDNGDMRDYLKKLLDPY-YEVETVNDGLEALTLIRNVSDHNNNGGMYDLVLTDI 1017 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + + G E+ + ++ E Q+IP+I ++A + + + G + Y+ KP S + Sbjct: 1018 MMPRLDGFELLRSLRNKPETQKIPIIMISARTGEESQVEGLEAGADDYLGKPFSARQLLT 1077 Query: 115 TIKKYI 120 ++ ++ Sbjct: 1078 RVESHL 1083 >gi|157151302|ref|YP_001449801.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157076096|gb|ABV10779.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 228 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED ++ +E GY NG EAL LA Q+ +VII+DI + ++GLE Sbjct: 2 RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMTGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I+ VI +TA A D G + Y++KP SL + ++ A Sbjct: 62 ALKEIRATGNTTH--VIMLTAMAEVDDRVNGLDAGADDYLTKPFSLKELLARLRSMARRA 119 >gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + + GY +G +ARQ+ DVII+DI L ++G + Sbjct: 2 RLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLPGMNGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E P++ +TA + DE G + Y++KP S + I+ + + Sbjct: 62 VCRKLREAEV--RTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRS 119 >gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 243 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED +L + G+ +G E A QH+ D+I++D+ L ++ Sbjct: 1 MTQRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++++ + P+I +TA + + + K G + YI+KP +S + + + Sbjct: 61 GFQILEKLRSNGIT--TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + YI + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 720 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE+N ++ + ++E +GY + +G +AL+ + D+I+MD+ + + G+ Sbjct: 604 KILIVEDNEINAEVVKVMLEGAGYQIVIATDGEKALQACIFEQYDLILMDMHMPVMDGIT 663 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++++ + P+IA++A A D E + G +ISKP+ + TIK++I Sbjct: 664 ATQKLRREMNFTN-PIIALSANAFVEDREHCIEAGMNDFISKPVEKQALLATIKRHI 719 Score = 55.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 13/119 (10%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 IV+D + + + + ++ + G + N + L + DV+++D+ + EI+G+++ + Sbjct: 474 IVDDLQTSREYIQHIVTSLGCLPNTFDNAEDFLAS-DISQFDVLLLDLSMPEITGVDVVE 532 Query: 67 QIKEDSELQEIP-VIAVTAFAMKGD-----EERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ D +L ++P +I V+A D + I + KPI +KK Sbjct: 533 TLR-DRQLSKLPHIIIVSAVIEHLDCSTSVRDLIWRTHA-----KPIVRQELESDLKKL 585 >gi|325299898|ref|YP_004259815.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319451|gb|ADY37342.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1366 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+E + + Y NG EALE+ + +P +II D+ + E+ GL + Sbjct: 1100 ILVVEDDEEIRNYISREL-AADYHVGTCSNGKEALEVIFKQEPALIISDVMMPEMDGLTL 1158 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K++ + IP+I +TA D + G +AY++KP ++ I T++ I Sbjct: 1159 CRMVKQNLHKRHIPIILLTAKTRDEDNIEGLETGADAYLTKPFNMKILRHTVENLI 1214 >gi|299146270|ref|ZP_07039338.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298516761|gb|EFI40642.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1411 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++VEDNE + +E Y L+ NG +A E+ + PD+++ DI + I GL Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1208 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ IK + + IPVI +TA M + G + Y+ KP ++ + + I + + Sbjct: 1209 ELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1268 >gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 222 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+++ED E + + +E + + A +G +++ + + D++++D+ L ++SG Sbjct: 1 MAKVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I+E S+ IPV+ +TA + + D + G + Y+ KP S + IK + Sbjct: 61 WNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILS 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 63 GFQVCKTIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 242 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 55/119 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G + E A+ PD+II D+ + +G Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGYA 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ED +L PVI +TA M D G + YISKP +K I Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 >gi|160883701|ref|ZP_02064704.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483] gi|156110786|gb|EDO12531.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483] Length = 1411 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++VEDNE + +E Y L+ NG +A E+ + PD+++ DI + I GL Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1208 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ IK + + IPVI +TA M + G + Y+ KP ++ + + I + + Sbjct: 1209 ELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1268 >gi|330888167|gb|EGH20828.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. mori str. 301020] Length = 645 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y++KP + + + +++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634 >gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] Length = 228 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED + + + +E Y ++G E +E + + D+I++D+ + + SG Sbjct: 1 MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLMMPKFSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I++ IP+I +TA ++ + G + Y++KP + I+ + Sbjct: 61 EEVCKIIRK---TSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALR 117 >gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLL 117 >gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 55/119 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G + E A+ PD+II D+ + +G Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTVFPDLIISDVMMPRANGYA 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ED +L PVI +TA M D G + YISKP +K I Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 >gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family [Chlorobium phaeovibrioides DSM 265] Length = 236 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 61/117 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ KL +E +GY L + NG +A + + D++++D+ L I G E+ Sbjct: 7 LVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ ++IP+I +TA + D+ + G + Y+ KP S I+ + Sbjct: 67 RKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKR 123 >gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 235 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVED ++ RD ++ G+ GME L+ A + PD +++D+ L + +G Sbjct: 11 RKILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAAAEWGPDCVLLDLMLPDENGY 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + +P+I +TA + D+ R + G + Y++KP S++ + I Sbjct: 71 RVCETLRSRDPV--VPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFRR 128 >gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264] gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264] Length = 229 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M++K ++IV+D+ K+ ++ GY + + +EALE R D+II+DI L + Sbjct: 1 MMQKEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNKTIDLIILDIMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+E +I+E ++P+I ++A D+ + G E YI+KP + M IK Sbjct: 61 MDGIEACLKIREQ---YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKS 117 Query: 119 YIGE 122 + Sbjct: 118 QLRR 121 >gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 360 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L D+++ SGY +G +A E R PD+I++D+ + E++GL++ Sbjct: 55 ILVVDDLSKNLQLVVDILDHSGYATTFATSGQQAFERVRTAHPDLILLDLMMPEMNGLQV 114 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + E QEIP+I +TA +GD K G Y++KP + + +K ++ Sbjct: 115 CEKLKSNQEYQEIPIIFLTASDEEGDLLEAFKLGAVDYVTKPFRAAELLARVKNHL 170 >gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM] gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 233 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + +E GY + ++G EALEL ++ KP +I++D L G+ Sbjct: 7 KILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPVYDGIT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ SE +P+I +TA D G + YI+KP + I+ + Sbjct: 67 VLRRIRKKSE---VPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRR 122 >gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51] gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D + L ++ Y + NG +AL+ + K D+ I+D+ L ++ Sbjct: 1 MAANILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I +QI+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GFSICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34] gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34] gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34] gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34] gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in Cd(II), Zn(II), Co(II) resistance [Cupriavidus metallidurans CH34] Length = 225 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + + + SG++ NG + L +A + DVII+D+ L + G Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+ SE PV+ +TA D R + G + Y+ KP + + + I++ + ++ Sbjct: 62 VIKSIRSKSET---PVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118 >gi|254504929|ref|ZP_05117080.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] gi|222441000|gb|EEE47679.1| response regulator receiver domain, putative [Labrenzia alexandrii DFL-11] Length = 123 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 85/122 (69%), Positives = 106/122 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E G+ LQTR G+EAL+LAR+++PD+I+MDIQL E+S Sbjct: 1 MAKTVLIVEDNELNMKLFHDLLEAHGFDTLQTRTGIEALKLARENRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED + IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F++T+K ++ Sbjct: 61 GLEVTKWIKEDESIASIPVVAVTAFAMKGDEERIRQGGCEAYISKPISVSKFLDTVKSFL 120 Query: 121 GE 122 GE Sbjct: 121 GE 122 >gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D ++ + +E GY NG +A+ + PD+II+D+ L +ISG Sbjct: 6 RKILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEFNPDLIILDLMLPDISGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K+I++ S +P+I +TA + G + Y+ KP S + + + Sbjct: 66 EICKRIRKISL---VPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRR 122 >gi|146305210|ref|YP_001185675.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145573411|gb|ABP82943.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1168 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +++++V+D+ N+ +E G RNG EAL +H D+++MD+ + E+ G Sbjct: 1044 RRLLLVDDDVRNIFALSSALEQKGAAVEVARNGFEALAKLDEHDDIDLVLMDVMMPEMDG 1103 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T++I++ +P+IAVTA AMK D+ER R+ G Y++KPI L I+ ++ Sbjct: 1104 YEATRKIRQQPRWNNLPIIAVTAKAMKDDQERCRESGANDYLAKPIDLDRLFSLIRVWMP 1163 Query: 122 E 122 + Sbjct: 1164 K 1164 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 3/113 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED ++ DL GY L + E LELARQ++PD I++D++L + SGL Sbjct: 776 RRVLVVEDEVRFARILFDLAHELGYACLVATSADEGLELARQYRPDAILLDMRLPDDSGL 835 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + +++K+D++ + IPV V+ ++ E G Y KP S E Sbjct: 836 GVLQRLKDDAQTRHIPVHVVS---VEDHSEAALHLGAVGYALKPTSRDQLKEV 885 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 43/91 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED+ L LI EALE R D +I+D++L ++ G Sbjct: 898 KRVLLVEDDPLQRNSIARLIGDEDIEISAVALAGEALEKLRDTVFDCMIIDLKLPDMLGN 957 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ +++ E+ PVI T + +EE Sbjct: 958 ELLRRMAEEDICSFPPVIVYTGRNLTREEEA 988 >gi|289628096|ref|ZP_06461050.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646717|ref|ZP_06478060.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. aesculi str. 2250] gi|330867455|gb|EGH02164.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 645 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y++KP + + + +++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634 >gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + GY + NG EAL K D+I+MDI + +I Sbjct: 1 MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K I++ L +I +TA + D+ + GC+ YI+KP L + + Sbjct: 61 GFEAIKIIRK---LTNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 226 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + Y +G A+E R PD+II+D+ L + G E Sbjct: 6 ILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYVRSLTPDLIILDVMLPAMDGYET 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ +TA G + Y++KP S S + ++ + Sbjct: 66 CRRIRE---FSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRR 120 >gi|73538429|ref|YP_298796.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Ralstonia eutropha JMP134] gi|72121766|gb|AAZ63952.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Ralstonia eutropha JMP134] Length = 396 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IV+D+ +L R+ ++ GY A +G +PD+I++D+ L Sbjct: 1 MPGHVLIVDDDAETRRLLREYLQKQGYRATAVADGRALRAALGTARPDLIVLDLMLAGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++ S +P+I +TA + D + G + Y+ KP + + IK + Sbjct: 61 GLELCRDLRTRS---NLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] Length = 223 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I +D + L +D E +GY+ +NG EA++ A +PD+I++DI + E G Sbjct: 1 MYKILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQA-SRQPDIILLDINMPEADG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ + P++ +TA D+ G + YI KP SL I +I Sbjct: 60 IEVCRRIR---DYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius CECT 5713] Length = 233 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D + L + +E +GY NG +AL+ K D II+D+ L I G Sbjct: 1 MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+I+++ ++ +TA + D+ + G + Y++KP S + +K Sbjct: 61 IEVTKRIRQEKIT--TYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 224 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|126658457|ref|ZP_01729605.1| CheY subfamily protein [Cyanothece sp. CCY0110] gi|126620199|gb|EAZ90920.1| CheY subfamily protein [Cyanothece sp. CCY0110] Length = 121 Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 70/121 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V++VED+ K+ +++ +G+ + +G +ALE + PD+I++DI + +++G Sbjct: 1 MRAVLVVEDSPAQQKMIATILKKNGWQVIIAEDGFQALESIKDSSPDLIVLDIVMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++IK + Q +P++ ++ + D K G +AYISKP + TI++ + Sbjct: 61 YEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYISKPFEDIELIGTIQQLLR 120 Query: 122 E 122 + Sbjct: 121 Q 121 >gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 222 Score = 156 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + + + GY +G EA A+ D+II+DI L + G+ Sbjct: 2 KILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++++ P++ +TA GD + G + Y+ KP ++ + Sbjct: 62 VCQNIRKENI--NTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRR 118 >gi|94270843|ref|ZP_01291837.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93450645|gb|EAT01750.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 483 Score = 156 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDN N ++ + +++ G A NG EA+E + D+++MD+Q+ E+ GL Sbjct: 222 ARILLAEDNISNQQVAQGILKKLGLSADAVANGREAIEALKTLPYDLVLMDVQMPEMDGL 281 Query: 63 EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+QI+ + IP+IA+TA AM+GD E+ G Y++KP+S E ++K+ Sbjct: 282 EATRQIRNPKSPIPNRNIPIIAMTAHAMQGDREKCLAAGMNDYVAKPVSPQDLAEALEKW 341 Query: 120 IGE 122 + E Sbjct: 342 LPE 344 >gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 217 Score = 156 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED E K+ + +E G+ + +G EA+E + V+I+D+ L + G Sbjct: 2 KILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ + PVI +TA D+ + G + Y+ KP+S + +K + + Sbjct: 62 VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRS 118 >gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 156 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ ++ + GY L+ +G +AL L ++H+ +II+D+ L E+ Sbjct: 1 MAKTILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLFQEHEVHLIILDVMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ + +P++ +TA + + D + G + Y+ KP S I + K+ + Sbjct: 61 GWSVCRRIRK---VSNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLL 117 >gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX] gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX] Length = 225 Score = 156 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +ALE R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGAD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +QI+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|17989004|ref|NP_541637.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23500356|ref|NP_699796.1| polar differentiation response regulator [Brucella suis 1330] gi|62317532|ref|YP_223385.1| DivK, polar differentiation response regulator [Brucella abortus bv. 1 str. 9-941] gi|83269512|ref|YP_418803.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161620674|ref|YP_001594560.1| hypothetical protein BCAN_B0613 [Brucella canis ATCC 23365] gi|163844764|ref|YP_001622419.1| hypothetical protein BSUIS_B0609 [Brucella suis ATCC 23445] gi|189022787|ref|YP_001932528.1| Response regulator receiver [Brucella abortus S19] gi|225629102|ref|ZP_03787135.1| two component response regulator [Brucella ceti str. Cudo] gi|225686398|ref|YP_002734370.1| hypothetical protein BMEA_B0587 [Brucella melitensis ATCC 23457] gi|237817080|ref|ZP_04596072.1| two component response regulator [Brucella abortus str. 2308 A] gi|254691029|ref|ZP_05154283.1| polar differentiation response regulator [Brucella abortus bv. 6 str. 870] gi|254695664|ref|ZP_05157492.1| polar differentiation response regulator [Brucella abortus bv. 3 str. Tulya] gi|254698813|ref|ZP_05160641.1| polar differentiation response regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254699848|ref|ZP_05161676.1| polar differentiation response regulator [Brucella suis bv. 5 str. 513] gi|254702986|ref|ZP_05164814.1| polar differentiation response regulator [Brucella suis bv. 3 str. 686] gi|254705892|ref|ZP_05167720.1| polar differentiation response regulator [Brucella pinnipedialis M163/99/10] gi|254711120|ref|ZP_05172931.1| polar differentiation response regulator [Brucella pinnipedialis B2/94] gi|254712421|ref|ZP_05174232.1| polar differentiation response regulator [Brucella ceti M644/93/1] gi|254715493|ref|ZP_05177304.1| polar differentiation response regulator [Brucella ceti M13/05/1] gi|254720403|ref|ZP_05182214.1| polar differentiation response regulator [Brucella sp. 83/13] gi|254732260|ref|ZP_05190838.1| polar differentiation response regulator [Brucella abortus bv. 4 str. 292] gi|256015389|ref|YP_003105398.1| polar differentiation response regulator [Brucella microti CCM 4915] gi|256029501|ref|ZP_05443115.1| polar differentiation response regulator [Brucella pinnipedialis M292/94/1] gi|256043508|ref|ZP_05446435.1| polar differentiation response regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256059196|ref|ZP_05449402.1| polar differentiation response regulator [Brucella neotomae 5K33] gi|256111465|ref|ZP_05452485.1| polar differentiation response regulator [Brucella melitensis bv. 3 str. Ether] gi|256157696|ref|ZP_05455614.1| polar differentiation response regulator [Brucella ceti M490/95/1] gi|256253332|ref|ZP_05458868.1| polar differentiation response regulator [Brucella ceti B1/94] gi|256256214|ref|ZP_05461750.1| polar differentiation response regulator [Brucella abortus bv. 9 str. C68] gi|256262462|ref|ZP_05464994.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260167408|ref|ZP_05754219.1| polar differentiation response regulator [Brucella sp. F5/99] gi|260544768|ref|ZP_05820589.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564703|ref|ZP_05835188.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260568101|ref|ZP_05838570.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|260756625|ref|ZP_05868973.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|260760055|ref|ZP_05872403.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|260763294|ref|ZP_05875626.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|260882442|ref|ZP_05894056.1| response regulator DivK [Brucella abortus bv. 9 str. C68] gi|261216064|ref|ZP_05930345.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|261217228|ref|ZP_05931509.1| response regulator DivK [Brucella ceti M13/05/1] gi|261220448|ref|ZP_05934729.1| response regulator DivK [Brucella ceti B1/94] gi|261313322|ref|ZP_05952519.1| response regulator DivK [Brucella pinnipedialis M163/99/10] gi|261318711|ref|ZP_05957908.1| response regulator DivK [Brucella pinnipedialis B2/94] gi|261320099|ref|ZP_05959296.1| response regulator DivK [Brucella ceti M644/93/1] gi|261323145|ref|ZP_05962342.1| response regulator DivK [Brucella neotomae 5K33] gi|261750321|ref|ZP_05994030.1| response regulator DivK [Brucella suis bv. 5 str. 513] gi|261753595|ref|ZP_05997304.1| response regulator DivK [Brucella suis bv. 3 str. 686] gi|261756818|ref|ZP_06000527.1| response regulator receiver [Brucella sp. F5/99] gi|265985421|ref|ZP_06098156.1| response regulator DivK [Brucella sp. 83/13] gi|265986509|ref|ZP_06099066.1| response regulator DivK [Brucella pinnipedialis M292/94/1] gi|265989926|ref|ZP_06102483.1| response regulator DivK [Brucella melitensis bv. 1 str. Rev.1] gi|265992969|ref|ZP_06105526.1| response regulator DivK [Brucella melitensis bv. 3 str. Ether] gi|265996201|ref|ZP_06108758.1| response regulator DivK [Brucella ceti M490/95/1] gi|294853591|ref|ZP_06794263.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297249571|ref|ZP_06933272.1| polar-differentiation response regulator divK [Brucella abortus bv. 5 str. B3196] gi|306839020|ref|ZP_07471841.1| response regulator receiver protein [Brucella sp. NF 2653] gi|306845945|ref|ZP_07478512.1| response regulator receiver protein [Brucella sp. BO1] gi|81320204|sp|Q7BBW0|DIVK_BRUAB RecName: Full=Polar-differentiation response regulator divK gi|81751298|sp|Q8FW53|DIVK_BRUSU RecName: Full=Polar-differentiation response regulator divK gi|81850387|sp|Q8YC73|DIVK_BRUME RecName: Full=Polar-differentiation response regulator divK gi|123545928|sp|Q2YKN1|DIVK_BRUA2 RecName: Full=Polar-differentiation response regulator divK gi|223635106|sp|B2SB45|DIVK_BRUA1 RecName: Full=Polar-differentiation response regulator divK gi|223635107|sp|A9MBQ2|DIVK_BRUC2 RecName: Full=Polar-differentiation response regulator divK gi|223635113|sp|A9WYT1|DIVK_BRUSI RecName: Full=Polar-differentiation response regulator divK gi|223635147|sp|A5VUU3|DIVK_BRUO2 RecName: Full=Polar-differentiation response regulator divK gi|19223931|gb|AAL86375.1|AF411569_1 response regulator DivK [Brucella abortus] gi|17984842|gb|AAL53901.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23463973|gb|AAN33801.1| polar differentiation response regulator [Brucella suis 1330] gi|62197725|gb|AAX76024.1| DivK, polar differentiation response regulator [Brucella abortus bv. 1 str. 9-941] gi|82939786|emb|CAJ12794.1| Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161337485|gb|ABX63789.1| Hypothetical protein BCAN_B0613 [Brucella canis ATCC 23365] gi|163675487|gb|ABY39597.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021361|gb|ACD74082.1| Response regulator receiver [Brucella abortus S19] gi|225615598|gb|EEH12647.1| two component response regulator [Brucella ceti str. Cudo] gi|225642503|gb|ACO02416.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237787893|gb|EEP62109.1| two component response regulator [Brucella abortus str. 2308 A] gi|255998049|gb|ACU49736.1| polar differentiation response regulator [Brucella microti CCM 4915] gi|260098039|gb|EEW81913.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260152346|gb|EEW87439.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260154766|gb|EEW89847.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|260670373|gb|EEX57313.1| response regulator receiver protein [Brucella abortus bv. 4 str. 292] gi|260673715|gb|EEX60536.1| response regulator receiver protein [Brucella abortus bv. 2 str. 86/8/59] gi|260676733|gb|EEX63554.1| response regulator receiver protein [Brucella abortus bv. 6 str. 870] gi|260871970|gb|EEX79039.1| response regulator DivK [Brucella abortus bv. 9 str. C68] gi|260917671|gb|EEX84532.1| response regulator receiver protein [Brucella abortus bv. 3 str. Tulya] gi|260919032|gb|EEX85685.1| response regulator DivK [Brucella ceti B1/94] gi|260922317|gb|EEX88885.1| response regulator DivK [Brucella ceti M13/05/1] gi|261292789|gb|EEX96285.1| response regulator DivK [Brucella ceti M644/93/1] gi|261297934|gb|EEY01431.1| response regulator DivK [Brucella pinnipedialis B2/94] gi|261299125|gb|EEY02622.1| response regulator DivK [Brucella neotomae 5K33] gi|261302348|gb|EEY05845.1| response regulator DivK [Brucella pinnipedialis M163/99/10] gi|261736802|gb|EEY24798.1| response regulator receiver [Brucella sp. F5/99] gi|261740074|gb|EEY28000.1| response regulator DivK [Brucella suis bv. 5 str. 513] gi|261743348|gb|EEY31274.1| response regulator DivK [Brucella suis bv. 3 str. 686] gi|262550498|gb|EEZ06659.1| response regulator DivK [Brucella ceti M490/95/1] gi|262763839|gb|EEZ09871.1| response regulator DivK [Brucella melitensis bv. 3 str. Ether] gi|263000595|gb|EEZ13285.1| response regulator DivK [Brucella melitensis bv. 1 str. Rev.1] gi|263092198|gb|EEZ16495.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|264658706|gb|EEZ28967.1| response regulator DivK [Brucella pinnipedialis M292/94/1] gi|264664013|gb|EEZ34274.1| response regulator DivK [Brucella sp. 83/13] gi|294819246|gb|EFG36246.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297173440|gb|EFH32804.1| polar-differentiation response regulator divK [Brucella abortus bv. 5 str. B3196] gi|306273580|gb|EFM55425.1| response regulator receiver protein [Brucella sp. BO1] gi|306405926|gb|EFM62184.1| response regulator receiver protein [Brucella sp. NF 2653] Length = 123 Score = 156 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 92/123 (74%), Positives = 110/123 (89%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLFRDLIE SGY ++TR+G+EAL+LAR+H PD+I+MDIQL E+S Sbjct: 1 MTKSVMIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKDDEELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 227 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED + + + GY +G E L+ A + DVI++D+ L +++G Sbjct: 1 MKRILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++++ +E PVI +TA D G + YI KP ++ + ++ Sbjct: 61 LEVCRRLRQE---KETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D L + +GY L +G EAL LA KPD++I+D+ L ++ G Sbjct: 10 ARLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ ++P++ +TA D+ + G + Y++KP L + I + Sbjct: 70 TVTRKLRASGI--DMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127 >gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1761 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 76/121 (62%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VEDN++N ++ + +E G + NG ALE D+++MD Q+ + G Sbjct: 1421 KRVLLVEDNDMNQEVATEFLEQVGVVLSIAENGQVALEKLATQSFDLVLMDCQMPVMDGY 1480 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+++++ L+++PVIA+TA AM GD+E + G +I+KPI ++ T+ +Y+G+ Sbjct: 1481 QATRELRKMPGLEKLPVIAMTANAMAGDKEMCLRVGMNDHIAKPIEVARLYSTLLQYLGD 1540 Query: 123 A 123 + Sbjct: 1541 S 1541 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + R +E+ G+ ++G EA+E + V ++D + E++G+E Sbjct: 1280 RILVADDNATARDIMRTTLESMGFKVDAVKSGAEAIEHCQHTDYPVALIDWLMPEMNGIE 1339 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I S + P ++ V+A A E++ +YI+KPIS S ++ I +G+ Sbjct: 1340 AAQKI--LSGKEHPPKILIVSAHANAEFIEQVEHSDIASYITKPISASRLLDGIMSSLGQ 1397 >gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] Length = 229 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E +L +D +E SG+ +G L+ A + D++I+D+ L G Sbjct: 1 MSKILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLMLPGTDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+++E ++ P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKRVRE---VKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|104782644|ref|YP_609142.1| sensor histidine kinase/response regulator [Pseudomonas entomophila L48] gi|95111631|emb|CAK16352.1| putative sensor histidine kinase/response regulator (hybrid) [Pseudomonas entomophila L48] Length = 642 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N + ++ + GY +G +A+E Q + ++MD +L + G E Sbjct: 515 RILLVEDNPVNQSVIEAMLRSLGYEVSLAIDGAQAVEQVGQQRFVAVLMDCRLPHVDGYE 574 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + ++P+IA+TA A +GD ER G Y+SKP + +++++ Sbjct: 575 ATRRIRLLPQHADLPIIALTASAQQGDRERCLAAGMNDYLSKPFKRTDLQRILRRWL 631 >gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 230 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++I +DN +K+ + IE + + +G EAL + P ++++DI + I Sbjct: 1 MDRNILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPLID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+E S P+I +TA + D+ G + YI KP S + IK + Sbjct: 61 GIEVCNRIREKS---NTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|254247533|ref|ZP_04940854.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184] gi|124872309|gb|EAY64025.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184] Length = 256 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 16 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 75 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 76 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 133 Query: 121 GE 122 Sbjct: 134 RR 135 >gi|119513098|ref|ZP_01632151.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119462232|gb|EAW43216.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 378 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D N+ L + ++E+ GY +G+ AL+ + PD+I++D+ + I G E Sbjct: 11 RILAVDDTRDNLILVQTILESEGYEIDLVADGLTALQQIEKSPPDLILLDVMMPGIDGYE 70 Query: 64 ITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+++ + IP++ +TAF G + +I KP + ++ + Sbjct: 71 VTRRIRKNPQFNASYIPILLITAFHQSS-VVEGLDAGADDFIRKPFDTDELLARVRSLLR 129 >gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 229 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11] Length = 219 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + + + Y +G + L+ A H D+II+D+ L I+G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLMLPSING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ Q P+I +TA + D+ G + YI KP + + I+ + Sbjct: 61 LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|320160493|ref|YP_004173717.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994346|dbj|BAJ63117.1| putative two-component response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 363 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E+ DL+E GY + +G +AL+L Q+ PD+I+ D+++ + G Sbjct: 1 MTRILVVEDEEMVRANIVDLLEAEGYETQEASDGEQALQLIWQNPPDLILCDVRMPRVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +I ++ L+ IP I +TA + D+ G + YI+KP + + +++ + Sbjct: 61 FTFLARISQEPRLRAIPFIFLTARVEREDQRLGMNLGADDYITKPFTRKDLLTAVQRRL 119 >gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri 93-146] gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Edwardsiella ictaluri 93-146] Length = 232 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L++ G+ + +G +AL + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILDA-SIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|163850399|ref|YP_001638442.1| response regulator receiver [Methylobacterium extorquens PA1] gi|188580174|ref|YP_001923619.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|240137476|ref|YP_002961947.1| putative response regulator receiver [Methylobacterium extorquens AM1] gi|254559653|ref|YP_003066748.1| response regulator receiver [Methylobacterium extorquens DM4] gi|163662004|gb|ABY29371.1| response regulator receiver [Methylobacterium extorquens PA1] gi|179343672|gb|ACB79084.1| response regulator receiver protein [Methylobacterium populi BJ001] gi|240007444|gb|ACS38670.1| putative response regulator receiver [Methylobacterium extorquens AM1] gi|254266931|emb|CAX22730.1| putative response regulator receiver [Methylobacterium extorquens DM4] Length = 126 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 83/122 (68%), Positives = 106/122 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY L+T NG+EA+ELAR H PD+I+MDIQL E+S Sbjct: 1 MKKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARAHHPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D +L+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T+++YI Sbjct: 61 GLEVTKWLKDDDDLRNIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRRYI 120 Query: 121 GE 122 G+ Sbjct: 121 GD 122 >gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241] gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241] Length = 229 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|332524525|ref|ZP_08400732.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107841|gb|EGJ09065.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 663 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED+ +N ++ L+ +G +G++ALE + D+++MD+Q+ + GL Sbjct: 534 RTVLLVEDDAVNREVTSCLLAEAGLAVELAEDGLQALECVARRSYDLVLMDMQMPGLDGL 593 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+++++ ++PV+A+TA A D R G + +I+KP+ + E + + Sbjct: 594 EATRRLRQLPRGHDVPVVALTANAFAEDRGRCLAAGMDDFITKPVDPARLFEAVLARL 651 >gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D + +K + +E +G EALELA+ + D+I++D+ L +I G Sbjct: 8 MSRVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLPKIDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + +QI+E +P+I +TA D+ + G + YI+KP ++ +K + Sbjct: 68 LSVCRQIRE---FSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074] gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074] gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D L Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 61 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +D + L + +E Y +G AL L ++K D+ I+D+ + +I G+E Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E + +P++ +TA + D+ G + YI+KP S++ + +K + Sbjct: 71 VCRKLREKT---NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126 >gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEIDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 231 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + ++ ++ SG+ N E ++ + PD++I DI + ++ Sbjct: 1 MSAQLLLVDDEPGLREAVKEYLQESGFKVQTASNAREGWDMMQHSIPDLVISDIMMPQVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G KQ+++D+ Q +PV+ +TA M GD + + G +AY++KP + ++ + Sbjct: 61 GYHFLKQMRDDARFQALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLL 120 >gi|32491287|ref|NP_871541.1| DNA-binding transcriptional regulator CpxR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166494|dbj|BAC24684.1| cpxR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 231 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D++ + L ++L+E G+ NG +AL D++++DI + + +G Sbjct: 1 MNKLLLVDDDKELISLLKELLEKEGFEIQVAYNGEQALSKLND-TIDLLLLDIIMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+I+++ Q +P+I +TA + D+ + G + YISKP + + IK + Sbjct: 60 IDTLKEIRKNK--QHLPIIMLTARGSELDKIIGLELGADDYISKPFNKRELVARIKAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 230 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + KL R + Y+ + NG EA++ D+I++DI + E+ Sbjct: 1 MNDRILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISADFYDLILLDIMMPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++E + + PVI +TA K G + Y+ KP ++ I Sbjct: 61 GFELLKTLREHLDNK-TPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVI 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 238 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E+ +D E Y +G EA+ +P +I++D+ L + SG E Sbjct: 5 RILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ + E +I +TA + + G + Y++KP S+ + +K ++ Sbjct: 65 VCRIIRK--KHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRR 121 >gi|298528058|ref|ZP_07015462.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511710|gb|EFI35612.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] Length = 378 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ LN ++ R ++ +GY + +G++A E+AR+H PD+I++D+ + G + Sbjct: 12 ILIVDDSPLNRRMLRVVLNKAGYRIQEAEDGLQAREMAREHLPDLILLDVMMPHEDGFDT 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K+ S Q+IP+I ++A + + + G YISKP + + M I+ ++ Sbjct: 72 CIKLKKQSSTQDIPIIFISALNDTENIVKGLELGGVDYISKPFAQTEVMARIRVHL 127 >gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 226 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E + G+ G +ALE+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ S +PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRELRARS---NVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|262195404|ref|YP_003266613.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] gi|262078751|gb|ACY14720.1| response regulator receiver sensor signal transduction histidine kinase [Haliangium ochraceum DSM 14365] Length = 395 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+DN N+ + +E G+ L +G EAL A PD+I++D+ + I G + Sbjct: 22 TVLIVDDNPENLGFLFEYLEECGFKVLVALDGEEALSYATHALPDMILLDVMMPGIDGFD 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121 ++K E ++ PVI ++A + D+ R + G Y++KPI+ + I + + Sbjct: 82 TCARLKTMPEARDTPVIFMSALSDPQDKLRAFELGGVDYVTKPINKEEVLARINAHVSLR 141 Query: 122 E 122 Sbjct: 142 R 142 >gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ D++I+DI + + + Sbjct: 12 MNKNILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 71 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 72 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 128 Query: 121 GEA 123 + Sbjct: 129 RRS 131 >gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KK +MI++D ++L ++ GY + + +AL+ ++ D+ I+DI L + Sbjct: 1 MAKKTIMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E + I+ + + PVI ++A + D+ + G + YI KP S+ + I+ Sbjct: 61 DGFEFVRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAV 120 Query: 120 IGE 122 Sbjct: 121 FRR 123 >gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] Length = 241 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ + + L + ++++D+ L GL Sbjct: 7 KILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K++++ + IPVI +TA + D + G + Y++KP + + I+ + Sbjct: 67 ICKRLRQTNNT--IPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRR 123 >gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D + R+ E GY + +GMEA+E+ + D+I+MDI + + G Sbjct: 1 MAKILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMVKNDDFDIIVMDIMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I++ +++IPVI ++A + D+ + G + Y+ KP S M ++ + Sbjct: 61 YSACKEIQK---IKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLN 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 238 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++V+D+ + R +E G + +G +AL A + PD++++D+ + + Sbjct: 7 MGRYVLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEPPDLVVLDLMMPGLD 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++ L +PV+ +TA + D + G + Y++KP S + I+ + Sbjct: 67 GIEVCRR--LRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVL 124 Query: 121 GEA 123 A Sbjct: 125 RRA 127 >gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] Length = 242 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +D + L + +E Y +G AL L ++K D+ I+D+ + +I G+E Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E + +P++ +TA + D+ G + YI+KP S++ + +K + Sbjct: 71 VCRKLREKT---NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126 >gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41] gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++++D+ L +E G ++ + ++ LE + + D+II+DI + ++ Sbjct: 1 MIPKILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ +I+E+ + +P+I ++A + D+ + G + Y+SKP + + +K + Sbjct: 61 GIQACLKIREE---KSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|163792858|ref|ZP_02186834.1| diguanylate cyclase [alpha proteobacterium BAL199] gi|159181504|gb|EDP66016.1| diguanylate cyclase [alpha proteobacterium BAL199] Length = 377 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + L NG EAL + + PD++++D+ + + Sbjct: 1 MPGRVLVVDDILPNVKLLEAKLSSEYFDVLTASNGPEALAVIERENPDIVLLDVMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++IK D +PV+ VTA + D R + G + +++KP+ S + + Sbjct: 61 GFEVCRRIKADPRTTHLPVVMVTALSDVADRVRGIEAGADDFLTKPVVDSALFARFRSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 93.3 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 47/113 (41%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++I+EDN ++ + + + +G E A + PD++I + L++ Sbjct: 154 SARLLIIEDNAIDAFNMIESLSVDNGEVKRVASGRAGFEAATRQDPDLVICSLNLEDDDA 213 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 L + Q + + + +P++ V + G Y+ KP+ + + Sbjct: 214 LRLLSQFRANEATRHLPILMVGEEDQTDKLAKALDLGANDYLMKPVDRNELLA 266 >gi|71905882|ref|YP_283469.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845503|gb|AAZ44999.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1005 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN +N ++ +L++ G +G +A+ELA + D+I+MDIQ+ + G+E Sbjct: 660 RVLLAEDNPINQEVALELLKDVGLRVDIAEDGRQAVELAAANDYDLILMDIQMPNMDGIE 719 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + P++A+TA A D + G +I+KP+ E + ++I Sbjct: 720 ATHAIRHLPQRTATPILAMTANAFNEDRDACLGAGMNDHIAKPVDPQKLYEALLRWIR 777 Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 54/109 (49%), Gaps = 8/109 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQEI 59 +++++D+ ++ +++ +G L LA D+++ D + + Sbjct: 515 ILLIDDDPNALEAISHMLKAYDARITTADSGEAGLNCVHSALAEGRHFDLVLTDWAMPGM 574 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPI 107 G+E +++I+E L + P ++ VTA+ + ER+R+ G I+KP+ Sbjct: 575 DGIETSRRIREI--LPQAPRIVLVTAYGREWPMERLREAGIVYQINKPV 621 >gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 230 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ ED + R ++ G+ +G A + ++ D++++D+ + ++ G Sbjct: 6 MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKGVFDLLVLDVIMPKMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q + E P I +TA D + G + Y+ KP S IK + Sbjct: 66 LEVCRQFR-LKEGYHTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|330876995|gb|EGH11144.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 783 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP L+ + ++I Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRLTELAGILDQWI 777 >gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 988 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 2/116 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN++N + ++++ G NG+EA+++AR DVI+MDIQ+ E+ G+E Sbjct: 873 RVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDMARSGAYDVILMDIQMPELDGIE 932 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ L +IP+IA+TA MKGD E+ + G + +I+KPI +++ Sbjct: 933 ATRRIRAF--LPDIPIIAMTAHTMKGDAEKCLEAGMQDHIAKPIDPETLFAALQRA 986 >gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 234 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M V IV+D + ++L + + GY NG L+ + +PD++I+DI L +I Sbjct: 1 MSAYTVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI K+I+++SE +P+I ++A + D+ + G + YI KP SLS IKK Sbjct: 61 DGYEICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|300868140|ref|ZP_07112774.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] gi|300333875|emb|CBN57954.1| response regulator receiver sensor signal transduction histidine kinase [Oscillatoria sp. PCC 6506] Length = 440 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M KK V+IV+DN N+ + DL++ + + ++G A+E PD+I++DI + Sbjct: 5 MEKKDIVLIVDDNSNNLGVLYDLLDNASFEVWVAQDGESAIEKVGYALPDLILLDIMMPG 64 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G E ++K + +IPVI ++A + D+ + G YI+KP + +K Sbjct: 65 IDGFETCNRLKANPLTADIPVIFMSAMSESIDKVKGLSLGAVDYITKPFQQEEVLARVKL 124 Query: 119 YI 120 ++ Sbjct: 125 HL 126 >gi|228983785|ref|ZP_04143982.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775980|gb|EEM24349.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EA++L Q D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEAIKLIEQKDFDIILLDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] Length = 225 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|224535689|ref|ZP_03676228.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus DSM 14838] gi|224522699|gb|EEF91804.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus DSM 14838] Length = 1113 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++IVEDN+ + + Y+ NG EALE+ + KPD+++ DI + E+SG Sbjct: 843 SRRILIVEDNDDLRIYLVNTL-GEDYLVQSCHNGKEALEILSEFKPDLVLSDIMMPEMSG 901 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ IK + E IPV+ +TA + + K G + Y++KP S+SI +I + I Sbjct: 902 DELCAAIKGNIETSHIPVLLLTALGDEKNMLEGLKIGADDYMAKPFSISILKASINRLI 960 >gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 247 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + +E+ G+ + G ALE+ Q + ++++DI L +++G E Sbjct: 6 RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEEFALVVLDIGLPDMTGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + +PVI +TA + + D + G + Y+ KP S ++ + Sbjct: 66 VCRQVRTS---KNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRR 121 >gi|110633700|ref|YP_673908.1| response regulator receiver protein [Mesorhizobium sp. BNC1] gi|110284684|gb|ABG62743.1| response regulator receiver protein [Chelativorans sp. BNC1] Length = 123 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 93/123 (75%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKVMIVEDNELNMKLFRDLIE SGY ++TR+G++AL+LAR+H+PD+I+MDIQL E+S Sbjct: 1 MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRDGLQALDLARRHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKEDDELHSIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVQSFIETIKSYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|303248282|ref|ZP_07334544.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490307|gb|EFL50219.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 825 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 71/119 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N ++ R+++E G + G EA+E+AR D ++MD+Q+ + GL Sbjct: 320 ILLVEDNSINQQVAREMLERFGAVVDVAGGGREAVEMARLAFYDAVLMDVQMPVMDGLAA 379 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+ I+ ++P++A+TA A+ GD +R + G Y++KPI + + + ++I A Sbjct: 380 TRAIRRLPGCGDLPIVALTAHALSGDRQRCLEAGMNDYLTKPIDPARLLAALGQWIAPA 438 Score = 114 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58 KV++V+D +LN +F ++ ++G+ + NG +A + A D I+MDI++ E Sbjct: 588 KVLLVDDAKLNRAIFSQILRSAGHEVVTAVNGKDACRALFGQKASGRPFDCILMDIEMPE 647 Query: 59 ISGLEITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + G T+ I++ +IP++A+T+ + R + G + + K Sbjct: 648 LDGPAATRIIRKLLADGVSPPCPPDIPIMALTSHDAAPELARGLEAGMDGCLRKVFEYEE 707 Query: 112 FMETIKKYI 120 + + + + Sbjct: 708 LLAALGRVM 716 >gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. L5] Length = 1381 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 57/116 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN + L+ ++G+ +G AL+ AR H PD+++ D+ + + GL Sbjct: 630 ARVLVADDNADMREYLTRLLRSAGHEVQAVADGRAALDAARAHTPDLVVSDVMMPRLDGL 689 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++ ++ D PV+ ++A A + + G + Y+ KP + + ++ Sbjct: 690 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRA 745 >gi|227823949|ref|YP_002827922.1| putative two-component sensor protein/histidine protein kinase [Sinorhizobium fredii NGR234] gi|227342951|gb|ACP27169.1| putative two-component sensor protein/histidine protein kinase [Sinorhizobium fredii NGR234] Length = 123 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 69/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VEDNE+N + + G+ L NG + +E+A +PD+I+MD+ L + G Sbjct: 1 MTRILLVEDNEMNRDMLSRRLSRRGFDVLIAENGKDGVEIAASERPDLILMDMSLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QIK + IPVIA+TA AM D + GC+ Y SKPI L + I++ + Sbjct: 61 WEATRQIKANPVTCGIPVIALTAHAMASDRDMALDAGCDDYDSKPIDLPQLVRKIEQLL 119 >gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] Length = 225 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 KV++V+D KL D + GY L+ +G AL++ + +II+D+ + ++ G Sbjct: 5 KVLVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDKDIQLIILDVMMPKLDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++DS+ IP+I +TA + DE + G + YISKP S I + ++ + Sbjct: 65 GVCREIRKDSK---IPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 >gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] Length = 237 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D + L + GY ++ ++G EAL++ D++++DI + +++G+E Sbjct: 10 KILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDVDLLVLDIMMPKVNGIE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++++ + +P++ ++A + D+ + G + Y++KP + F +K + + Sbjct: 70 VCKKVRQN---KNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRS 126 >gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 230 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+D ++ + Y+ L+ NG EAL R+ D++I+D+ L ++ G Sbjct: 1 MKTILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAVDLVILDLMLPDMEG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ +P++ +TA + G + YI KP M IK + Sbjct: 61 ERVCQEIR---TFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|310825369|ref|YP_003957727.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398441|gb|ADO75900.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1002 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +DN R L+E+ + +G EAL A PD+++ D+ + + G Sbjct: 633 HILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFA 691 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + +P I ++A A + + G + Y+ KP S + ++ + A Sbjct: 692 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 751 >gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] Length = 231 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 +K++++ ED ++ +E SGY + NG +AL+ + K D+ ++DI + I Sbjct: 1 MKRILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K+++E S I +I +TA + D+ R G + Y++KP S S + + Sbjct: 61 DGFEVCKRLRERSST--IGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAI 118 Query: 120 IGE 122 Sbjct: 119 HRR 121 >gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D + L + G+ L+ +G A+ D++I+D+ + +++G Sbjct: 1 MATILIVDDETRMLDLVALYVAPYGHRVLKESDGEAAVNRVADEPVDLVILDVMMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ ++P+I +TA K D + + G + Y++KP M + + Sbjct: 61 WEVCQDIRS---FSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|160885580|ref|ZP_02066583.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483] gi|156109202|gb|EDO10947.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483] Length = 1459 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN +++ + Y L+ NG E L+ A+Q+ PD+II D+ + + GL++ Sbjct: 1198 ILIVEDNNELRHFLWNILSET-YTVLEATNGKEGLKYAQQYIPDLIISDVMMPVMDGLDM 1256 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K IK D + IP+I ++A + D + G + YI+KP S + I + + Sbjct: 1257 VKAIKADHDTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLRQ 1314 >gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 236 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG AL+ AR+ +PD II+D+ + + G Sbjct: 10 ARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 70 GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 127 Query: 123 A 123 + Sbjct: 128 S 128 >gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D R+ E G+ + +GMEA+ + R+ D IIMD+ + ++ G Sbjct: 1 MSKILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTICREQDFDAIIMDVMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I++ ++IPV+ ++A + D+ + G + Y+ KP S M ++ I Sbjct: 61 FSACKEIRK---TKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 227 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+ IV+D+ ++ +E G+ ++ +G+ AL ++ P +II+D+ L I G+ Sbjct: 5 KKIYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKIKEELPLLIILDLMLPGIDGM 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++++ ++P+I +TA D+ + G + YI KP + +K + Sbjct: 65 TLCKEVRK---FTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRR 121 >gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 245 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED++ R + G+ ++ +G LEL DV+++D+ L +I G E Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ S ++P+I VTA D + G + Y++KP + I+ + + Sbjct: 80 CCRRLRRSS---DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 >gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++++ED + K+ + +E Y Q +G E LE+ D++++D+ + +I Sbjct: 1 MNKIKILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMIPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ K+I+ S +PVI VTA + D K G + Y++KP S M+ IK Sbjct: 61 SGEDLIKEIRNKS---NVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1964 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 KKV+IV+D+ N+ L+E + NG + + D+++MD+ + + G Sbjct: 1845 KKVLIVDDDVRNIFALTSLLERYQMQVIPAENGAAGIACLQNSTDIDLVLMDVMMPGMDG 1904 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K I++ + Q +P+IA+TA AMKGD ++ G YI+KP+ + ++ ++ Sbjct: 1905 YETMKAIRKLQQFQSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1963 Score = 87.9 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L ++ G+ L AL + ++++P + +DI L SG I Sbjct: 1578 ILIVDDDLNFARLVLEIARGQGFKGLIALRSSTALAMLQKYQPCAVTLDICLPGDSGWTI 1637 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYIG 121 +IK D + IP I ++ D +R +K G +Y KP++ ++ +K++I Sbjct: 1638 LDRIKHDPKTVHIPGIIMSVNN---DRQRGQKLGAYSYYQKPLTRENLVKIMAGLKQFIE 1694 Query: 122 E 122 Sbjct: 1695 R 1695 >gi|209523400|ref|ZP_03271955.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] gi|209496142|gb|EDZ96442.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] Length = 438 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ V+D N+ L DL+ GY +G A+ELA + PD++++DI + +++G E Sbjct: 7 HILWVDDEPANLVLLEDLLMAEGYDTTLAESGPRAIELATNNPPDLVLLDIMMPDMNGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++E LQ P+I +TA + + + + YI+KPI++ + + I I Sbjct: 67 VCDRLREHDILQTTPIIFLTALDDEESRLKGLEKMGDDYITKPINIKLLLAKIHNII 123 >gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1156 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +N + + ++ GY NG EAL + D++ MD Q+ + G E Sbjct: 819 KILLVDDHPINQTVIVNQLQMLGYQPECASNGSEALAKLQAQSYDIVFMDCQMPVLDGYE 878 Query: 64 ITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+++ +++ + VIA+TA A++ D E+ G + ++SKP I+++ Sbjct: 879 ATRELRRQEGSNRHTIVIALTASALESDREKCLAVGMDDFLSKPFDQDTLQAMIERW 935 Score = 65.5 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 11 NELNMKLFRDLIETSGYIALQTRNG---MEALELA--RQHKPDVIIMDIQLQEISGLEIT 65 N + R +E G + + M+AL A R H DV I+D+QL G I Sbjct: 679 NATTRQTVRSHLEAWGMQIDEATDSTSTMDALRNAVSRCHPYDVAILDLQLPGSQGESIV 738 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I+ + L +I +T + + Y++KP+ S E++ + Sbjct: 739 PMIRCNPSLASTKLIVITTMHQLDTVQELESMEILGYLTKPMKASQLWESLLAAV 793 >gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp. PCC 8106] Length = 477 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 62/117 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ N+K+ ++ Y + NG AL A PD+I++DI + E+ G ++ Sbjct: 13 ILIVDDHPENLKILTQMLSQKNYKLRKAINGEMALNAAFSKPPDLILLDIVMPEMDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + IKE+ EIPVI ++A ++ + + G YI+KP + + ++ + Sbjct: 73 CQHIKENPITSEIPVIFISALDEAFNKVKAFEMGGVDYITKPFQIKEVLARVQLQLR 129 >gi|71908504|ref|YP_286091.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848125|gb|AAZ47621.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 858 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++VED +N + ++ ++ +G NG +ALELA D+I+MD+Q+ + GL Sbjct: 736 AKILLVEDEPVNQAIAKEFLQGAGLNVTLANNGRKALELAESRAFDLILMDMQMPVMDGL 795 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+QI+ E+P+IA+TA A D + G +I KP+ +F + K++ Sbjct: 796 QATRQIRALPGYSEVPIIAMTANAFTEDRTKCLLAGMNDFICKPVEPEVFFSMLLKWL 853 Score = 77.1 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 7/121 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 ++ ++ +D ++ + L+ G +G A+ ++ ++++D+ + Sbjct: 589 RRALVADDLQITQMVHCHLLRQLGLSPEAVVSGPAAIAAIQKADAENDPFSILLLDLLMP 648 Query: 58 EISGLEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G++ +I++ S L P+ + TA R G + KPI+ SI + Sbjct: 649 GQGGMDTLAKIQKLS-LNRPPICMLVTASGDSSIAISARAAGFADVLVKPINQSILKAAL 707 Query: 117 K 117 Sbjct: 708 A 708 >gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 225 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 61/118 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L +D +E GY + NG EALE+ PD+II D+ + E+ G Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHDVPDMIICDVMMPEMDGY 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q++++ IPV+ ++A D + G + Y+ KP + ++ + Sbjct: 80 TFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137 >gi|330963168|gb|EGH63428.1| sensory box protein/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 705 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D+ L L++ GY L +G +AL + + PD+I++DI + + G Sbjct: 6 ATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDERAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +K IP+I ++A +G + G E Y+SKP+ + ++ + Sbjct: 66 EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLR 124 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++VED E ++ + GY + +G LE A K D++++DI L ++S Sbjct: 1 MAEKILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ +S ++PVI +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 GMEVLRRLRRES---DLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAAL 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|299147450|ref|ZP_07040515.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298514728|gb|EFI38612.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1459 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN +++ + Y L+ NG E L+ A+Q+ PD+II D+ + + GL++ Sbjct: 1198 ILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYAQQYIPDLIISDVMMPVMDGLDM 1256 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K IK D IP+I ++A + D + G + YI+KP S + I + + Sbjct: 1257 VKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLRQ 1314 >gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D ++ + + GY +G EALE +H+PD+I++D+ L ISGL Sbjct: 6 ARILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGLPGISGL 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E S +P+I ++ + D+ + G + Y+SKP L+ + ++ + Sbjct: 66 EVCRKVREQS---NLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRH 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 66/123 (53%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+E +L + + T YI +G+E ++ +H D+I++D+ + ++ Sbjct: 1 MNYHILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ I+ S IP+I +TA + D+ + G + YI+KP S +F+ ++ + Sbjct: 61 GFEVANIIRNQS---NIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 222 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+++ED E + + +E + + AL +G + + + + D++++D+ L ++SG Sbjct: 1 MAKVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I+E S+ IPV+ +TA + + D + G + Y+ KP S + IK + Sbjct: 61 WNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILS 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|315919226|ref|ZP_07915466.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693101|gb|EFS29936.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1381 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++VEDNE + +E Y L+ NG +A E+ + PD+++ DI + I GL Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1178 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ IK + + IPVI +TA M + G + Y+ KP ++ + + I + + Sbjct: 1179 ELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1238 >gi|260170896|ref|ZP_05757308.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2] Length = 1381 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++VEDNE + +E Y L+ NG +A E+ + PD+++ DI + I GL Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1178 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ IK + + IPVI +TA M + G + Y+ KP ++ + + I + + Sbjct: 1179 ELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1238 >gi|284040223|ref|YP_003390153.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283819516|gb|ADB41354.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 236 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L ++ + GY + +G + L+L K D+ I D+ + + G Sbjct: 1 MATILLVEDDPNLGQLVQEYLTMKGYPTDRAIDGNQGLQLFMAGKYDLCIFDVMMPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++ D +++P+I +TA +M+ D + K G + Y++KP S+ + I+ + Sbjct: 61 FTLAKEVRMD--HRDVPIIFLTAKSMQEDTIQGFKAGADDYMTKPFSMEELLLRIQAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M K +++V+D +L + +GY +G EA+E+ + +PD+II+D+ L Sbjct: 1 MSKPIEATIVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I G +T++I+++ + PV+ +TA D+ G + Y++KP SL + I Sbjct: 61 PDIDGFTVTRRIRQEGI--DAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 117 KKYIGE 122 + + Sbjct: 119 RAILRR 124 >gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 226 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62 K+++V+D KL RD + G+ ++ +G EA++ Q ++++D+ + ++ G Sbjct: 5 KILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K I++ ++PVI +TA + + DE + G + YISKP S I + + + Sbjct: 65 EVLKTIRK---YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 598 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L ++ GY + +G ALE PD+I++DI + +I G + Sbjct: 14 ILIVDDTPGNLHLLSRILRKKGYQVREAIDGKTALEEVNNKLPDLILLDIMMPDIDGYTV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+K D E+P+I ++A D+ + + G YISKP + +K + Sbjct: 74 CNQLKSDPNTAEVPIIFLSALDDIFDKVKAFESGGVDYISKPFQFQEVLIRVKNQL 129 >gi|119944737|ref|YP_942417.1| response regulator receiver modulated diguanylate cyclase [Psychromonas ingrahamii 37] gi|119863341|gb|ABM02818.1| response regulator receiver modulated diguanylate cyclase [Psychromonas ingrahamii 37] Length = 322 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+IV+D + N+K+ DL++ Y NG +ALELA+ PD+I++DI + E+ G Sbjct: 7 QKVLIVDDIKDNIKVLIDLLKPE-YKTFFATNGEKALELAQNMSPDIILLDIVMPEMDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K + +IPVI ++A + GDE + + G YI+KPIS +I +K ++ Sbjct: 66 EVCQKLKSNPITCDIPVIFISAMSDIGDETKGLEVGAVDYITKPISPAIVKARVKNHL 123 >gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 230 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V++ +D++ ++ GY ++ +G++AL+ ++ +II+DI + + Sbjct: 1 MTKLTVLVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEVHLIILDIMMPNM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ T +I+E+ + IP+I ++A A GD+ G + Y++KP + +K Sbjct: 61 DGITATFKIREE---RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1] gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L R + G+ + +G + + ++I++D+ + GL Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVELIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + I + Sbjct: 70 ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 >gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED +L RD +E+ GY A G L A + D+II+D+ L G Sbjct: 1 MKTILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNTDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++I+++ +IP+I ++A + D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICRRIRQE---ADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 232 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED+ R L+E GY + +G E L+ D++I+DI + ISG Sbjct: 1 MNKLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNISG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++I+E S +P++ +TA +++ D+ G + Y+ KP S + I+ I Sbjct: 60 IDVCRKIREKS---YVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 956 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDNELN ++ +L++ G NG EA+E + + D+++MD+Q+ + GL Sbjct: 617 ARVLLVEDNELNQEVATELLQGVGVEVAVAHNGQEAVEQVQAGRFDLVLMDMQMPVMDGL 676 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ D L +P+IA+TA AM D E G +++KPI ++ ++ Sbjct: 677 TATRTIRRDEALSGLPIIAMTANAMASDREACLAAGMNDHLAKPIEPEHLFASLLHWL 734 Score = 88.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 K+V++V+DN+ L + +++ +A G AL+ + +++ +D Q+ Sbjct: 470 KRVLVVDDNDSARTLLQTMLQDLNLVAEAVDAGPAALDAVYKSAQAGQPFEIVFLDWQMP 529 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +SG+E+ ++++ ++ VT + + G + + KP+S S+ +++ Sbjct: 530 GMSGVELAQRLQALPLEVTPRLVLVTGYGREEVLSSAEAAGIQTVLVKPVSASMLFDSVA 589 Query: 118 K 118 + Sbjct: 590 R 590 >gi|224540766|ref|ZP_03681305.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM 14838] gi|224517633|gb|EEF86738.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM 14838] Length = 1377 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED+E + Y+ + NG EAL H PD+II D+ + E+ GL Sbjct: 1135 RHVLVVEDDEEIRHYICRELSNDFYM-TECSNGKEALASILSHTPDLIISDVMMPEMDGL 1193 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++ + +P+I +TA + D G +AY+ KP S+ + +T+ I Sbjct: 1194 TLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNLIRR 1253 >gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 233 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + + +E S + N E EL +Q P+V+I DI + ++ G + Sbjct: 7 KILLVDDEPGLRESVQAYLEDSDFEVRVASNAQEGWELLQQEIPNVLISDIMMPQVDGYQ 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-GE 122 KQ++ED+ Q +PV+ +TA M D + + G +AY+ KP + + I Sbjct: 67 FLKQVREDARFQALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTSLIERR 126 Query: 123 A 123 A Sbjct: 127 A 127 >gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 239 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++V+D + K+ D + G+ + +G AL L + + D++++D+ + + G Sbjct: 5 TQRILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVMMPGLDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ D + +P+I +TA A + D + G + Y++KP S+ I+ + Sbjct: 65 FDVARKVRAD---RGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLR 121 Query: 122 EA 123 + Sbjct: 122 RS 123 >gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED+ +L +D GY A +G + L+ A D+II+DIQL +SG Sbjct: 1 MTRILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K I+E ++P++ V+A + D+ R G + +++KP S + + K ++ Sbjct: 61 FEICKTIRERL---DVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 +K++++VED + + ++ +GY ++ +G AL+ ++ DV I+DI + I Sbjct: 1 MKRILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K++++ S + +I +TA + D+ G + Y++KP S S + + Sbjct: 61 DGLTVCKELRKKSG--NLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSL 118 Query: 120 IGE 122 Sbjct: 119 YRR 121 >gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium sticklandii DSM 519] gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium sticklandii] Length = 230 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I+ED E ++ ++ GY L +G+E L L R PD++I D+ + I Sbjct: 1 MSFKILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVMMPTID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ + ++PVI +TA + D + + G + Y++KP S + + + Sbjct: 61 GLEVLREIR---LISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVML 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T17] Length = 289 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + G+ +G A+ D +++D+ L I G E Sbjct: 2 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 62 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 118 >gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 225 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++L + GY + +G EA+ I++DI ++++ G E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMRKMDGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I VTA D + K G + Y++KP I+ + Sbjct: 64 CKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR 118 >gi|44004551|ref|NP_982220.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|190015016|ref|YP_001966750.1| DNA-binding response regulator [Bacillus cereus] gi|190015282|ref|YP_001967074.1| DNA-binding response regulator [Bacillus cereus] gi|218848201|ref|YP_002455136.1| DNA-binding response regulator [Bacillus cereus AH820] gi|296506624|ref|YP_003667858.1| DNA-binding response regulator [Bacillus thuringiensis BMB171] gi|42741617|gb|AAS45062.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|116584692|gb|ABK00807.1| DNA-binding response regulator [Bacillus cereus] gi|116584963|gb|ABK01072.1| DNA-binding response regulator [Bacillus cereus] gi|218540252|gb|ACK92648.1| DNA-binding response regulator [Bacillus cereus AH820] gi|296327211|gb|ADH10138.1| DNA-binding response regulator [Bacillus thuringiensis BMB171] Length = 227 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + GY ++ +G EA+ L + ++++DI + E++G E Sbjct: 4 ILLVDDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWET 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E +P+I +TA D + K G + Y++KP + I+ + Sbjct: 64 CNKIRE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 118 >gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1969 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 76/120 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++ EDN LN ++ +++E+ G +G+EA+ELARQH D+I+MDIQ+ + GL Sbjct: 1617 QHLLLAEDNPLNQEVALEMLESLGLNVEVVEDGLEAVELARQHDFDLILMDIQMPVMDGL 1676 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T++I+ + P++A+TA A + D++ + G A+I+KP+ + + + +++ E Sbjct: 1677 EATRRIRTLPGCKNTPILAMTANAFEEDQKNCSEAGMNAHIAKPVDPELLYKMLLEWLPE 1736 Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 +V++ +D+ +++ ++ G+EA+ ++++MD ++ + Sbjct: 1473 RVLVADDHPEALEILVYMLTQLQCSVTAVSGGLEAVGAVSMADHTHTPFELVLMDWEMPK 1532 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +GL+ + I + +I ++ +K E ++K G +I+KPI+ ++++ Sbjct: 1533 TNGLDAAQLILSEKLTAPPKLILISGTHLKNSEI-LKKYGFIGFIAKPITPVSLKTSLEE 1591 Query: 119 YIGE 122 + + Sbjct: 1592 ILNQ 1595 >gi|329889207|ref|ZP_08267550.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] gi|328844508|gb|EGF94072.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta ATCC 11568] Length = 453 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y L +G A+ LA +PD+I++D+ + + Sbjct: 1 MSARILVVDDVEANVRLLEAKLTLEYYDVLTCHDGATAIALAGAEQPDLILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++IK ++ + IPV+ VTA + D + + G + ++SKP+ I M ++ Sbjct: 61 GFETCRRIKAAADTRHIPVVLVTALDGRHDRIKGLEAGADDFLSKPLDDVILMARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+DN L ++ + + L + LE AR D++I++I + GL Sbjct: 155 RVLIVDDNTLQAQVMAQELSRE-HRPLIEPSAEAGLETAR-GPVDLVIVNITSERFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q++ + +P++AV D + + G + +PI ++ + Sbjct: 213 LIAQLRSKEPTRRLPILAV---VDTQDRPRLLKALELGAHDLLIRPIDPEELAARVRTQV 269 Query: 121 GE 122 Sbjct: 270 RR 271 >gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 238 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED+E L R ++ GY + +G +AL + D +I+D+ L + Sbjct: 1 MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++I++ + +PVI ++A + + G + Y++KP SL + +K Sbjct: 61 GLEICRRIRQM--TRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 242 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K +V+IVED +L + ++ G+I + + + A PDVI++D L Sbjct: 1 MKHLPRVLIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDTMLPDVILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL + + ++ + IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 QSGLSLARLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium limosum KIST612] gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium limosum KIST612] Length = 239 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++V+D L + G+ G EAL +++ PDV+I+DI L ++ G Sbjct: 7 KRILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIMLPDMDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + I+E PV+ ++A D+ G + YI+KP S + +K + Sbjct: 67 IEVCRAIRE---FSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLR 123 Query: 122 E 122 Sbjct: 124 R 124 >gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + +L ++ GY ++ NG+E LE+ D+II+DI + ++ G+E Sbjct: 5 TILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILENTIVDLIILDIMMPKMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+++ + +P+I ++A D+ G + Y+ KP + + +K + Sbjct: 65 ACLNIRKN---RNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRR 120 >gi|256396664|ref|YP_003118228.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362890|gb|ACU76387.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 273 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED + + G+ +G A+ A++H PD+I++D+ L G Sbjct: 1 MTSILVVEDEPTLAEAIAARLRAEGFATHLAGDGPAAVRTAQEHLPDLIVLDVMLPGFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ + + +PV+ VTA + D + G + Y++KP S+ + + + Sbjct: 61 LEVCRRIQAE---RAVPVLMVTARDDESDLIEGLRTGADDYLTKPFSMRELIARVHALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212] gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212] Length = 245 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + G+ A +NG E + + D++I+DI + GL Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAVDLVILDIMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ +S IP++ +TA + + D + G + Y+SKP + + ++ + + Sbjct: 66 LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122 >gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 231 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 3/125 (2%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K +++V+D + + +E + + +A E+ +++ PD++I DI + Sbjct: 1 MSKQANILLVDDEPGVRESVQAYLEYADDFQVQVASHANQAWEILQKNPPDLVISDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G + K++++D + IPV+ +TA M D + GC+AY+SKP +K Sbjct: 61 EVDGYQFLKKLRDDPRYEAIPVVFLTARGMTTDRIQGYNAGCDAYLSKPFDPEELEAIVK 120 Query: 118 KYIGE 122 + Sbjct: 121 NLLER 125 >gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 243 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + G R+G E +L H D++++D+ + GL Sbjct: 6 HILVVDDDHEIRDLLARFLAKHGLHVSTARDGAEMTKLLDAHGIDLVVLDLMMPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +T++++ +P+I +TA A D + G + Y+ KP + + IK + A Sbjct: 66 LTRRLRAQGCT--LPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRA 123 >gi|75908369|ref|YP_322665.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702094|gb|ABA21770.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 443 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+++ + + +G+ +G +ALE + PD+I++D+ + + G E Sbjct: 11 ILVVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQSRVPDLILLDVMMPVMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K E +IPVI +TA + G YI+KP + + I ++ Sbjct: 71 CKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISAHL 126 >gi|332881353|ref|ZP_08449003.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680729|gb|EGJ53676.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1328 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED E ++ + +I NG EAL++ R+ D++I D+ + E++G E+ Sbjct: 1056 ILIVEDEESIRNFMKERLSPL-FIVETASNGKEALDIIRKEHIDLVISDVMMPEMNGYEL 1114 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 IK D L IP+I +TA + + K G EAYI KP S I + Sbjct: 1115 CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLL 1170 >gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 248 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL+ ++ D++I+DI + + + Sbjct: 18 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 77 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 78 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 134 Query: 121 GEA 123 + Sbjct: 135 RRS 137 >gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] Length = 227 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + GY L+ +GMEA+E+ + +II+D+ + + G Sbjct: 5 KILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEKDIALIILDVMMPRMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++++ S+ +P+I +TA + + DE + G + YISKP S I + + + Sbjct: 65 QVCREVRQSSK---VPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRR 121 Query: 123 A 123 A Sbjct: 122 A 122 >gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA regulates genes involved in folding/degrading periplasmic proteins OmpR family protein [Xenorhabdus nematophila ATCC 19061] gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila] gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 230 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL+ D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYIDS-SIDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K++++ + PVI +TA D + G + Y+ KP + + I+ + Sbjct: 60 IETLKELRQ---YHQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1] gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 243 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L R + G+ + +G + + D+I++D+ + GL Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + I + Sbjct: 70 ICRRLRSAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 >gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 842 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 74/117 (63%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNE+N L +L++ G+ ++G +ALE+ + + D+++MD+Q+ ++ G E Sbjct: 718 RILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEILSKERFDLVLMDVQMPQMHGDE 777 Query: 64 ITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +T++I+ +P++A+TA+A+KGD ER G + Y+SKPI + +K+ Sbjct: 778 VTRRIRAGEAGDPHVPIVALTAYALKGDRERFLAAGMDDYLSKPIDMQELERVLKRI 834 >gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] Length = 231 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IV+D + L ++ G+ + G EA++ R + D+ I+DI L +I Sbjct: 1 MKKQILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E PVI +TA D+ G + YI KP + + +K + Sbjct: 61 GFTICQKIREKYFY---PVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] Length = 231 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ V+IVED ++L TSG + N EA + KPD+I++D L + Sbjct: 1 MMTTSVLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDC 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GL+ ++++ + +PVI +TA + D R + G + Y++KP S + I+ Sbjct: 61 AGLDWLRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAV 120 Query: 120 IGE 122 I Sbjct: 121 IRR 123 >gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ A G +ALE ++ D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ+++ S +PVI VTA + D+ + G + Y++KP S + ++ + Sbjct: 61 TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|198274925|ref|ZP_03207457.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135] gi|198272372|gb|EDY96641.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135] Length = 1373 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+I+EDN + RDL++ Y L+ NG E +++A + PD+++ D+ + + G Sbjct: 1119 QTVLIIEDNTDMRRYLRDLMKKH-YRVLEAENGEEGVKVAVEQVPDLVLSDVMMPVMDGF 1177 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ E IP++ +TA A D G + Y+ KP + + + + + Sbjct: 1178 TCCAELRKRKETAHIPILLLTAKAEDKDSVEASYRGADDYVRKPFNPEVLLAKVAHLL 1235 >gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 962 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED+ ++ +++ ++ +G +E RQ + D+I+MD+Q+ + G + Sbjct: 841 RLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVEKWRQGEYDLILMDVQMPRLDGFQ 900 Query: 64 ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T+ I+ E + IP+IA+TA AMK D+ R G + YISKPI+ +E +K Sbjct: 901 ATRAIREQEQEQGARIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKVK 956 >gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 228 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+E L +E + ++ N EA+++ + + +++++DI + +I G+E Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++D + +P+I ++A + D+ G + YI+KP + + +K + Sbjct: 65 CMRIRKD---KNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119 >gi|254251724|ref|ZP_04945042.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158] gi|124894333|gb|EAY68213.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158] Length = 256 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 16 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 75 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 76 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 133 Query: 121 GE 122 Sbjct: 134 RR 135 >gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1299 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN R L+ Y +G ALE R+ +PD+++ D+ + + G Sbjct: 646 RVVLADDNPDMRDYVRRLLGQD-YEVEAVGDGGAALEAMRRRRPDLVLTDVMMPGMDGFG 704 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + + ++ D L++IPV+ ++A A + + G Y+SKP S + ++ Sbjct: 705 LLQAMRSDPRLRDIPVVMLSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRA 759 Score = 98.7 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 12/124 (9%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 V++VEDN + L+E GY + R+G++AL + + D+++ D+ + + G+ Sbjct: 1174 VLVVEDNPEIGEFSTQLLEDLGYRTVLARSGIDALRMLDDNPKRFDLVLSDVVMPGMDGV 1233 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY--ISKPISLSIFMETIKKYI 120 + ++I+ L IP++ + ++ + GG + I KP S+ +++ + Sbjct: 1234 TLGQEIRR--RLPTIPIVLNSGYSDV-----LADGGRHGFSLIHKPYSVDELSRVLRQVM 1286 Query: 121 -GEA 123 G A Sbjct: 1287 AGRA 1290 >gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1771 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 76/120 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VEDNE+N+++ + +E G I NG AL+ Q D+++MD Q+ + G Sbjct: 1424 KRVLLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLSQQSYDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T I++ EL +PVIA+TA AM GD+E + G +I+KPI ++I +T+ KY+G+ Sbjct: 1484 QATMAIRQRPELAHLPVIAMTANAMAGDKEMCLRAGMNGHIAKPIEVNILYQTLLKYLGD 1543 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +E+ G+ R G EA+ QH+ V ++D ++ + GLE Sbjct: 1284 VLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVALIDWKMPSMDGLEA 1343 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QI++ ++ ++ V+A A +I + G YISKPIS S ++ I +G A Sbjct: 1344 ARQIQQQAKAAP-RILMVSAHANHEFLTQIEQLGLAGYISKPISASRLLDGIMNALGRA 1401 >gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] Length = 231 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED + R + GY+ +G E L A++ D+I++D+ L + G + Sbjct: 2 KVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLPGMDGFQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +PVI ++A D R + G + Y+ KP SL+ M I Sbjct: 62 LLRELRKKSR---VPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARR 117 >gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] Length = 223 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+M+V+D +L R ++ +G+ ++ N EAL++ D+ ++DI + + Sbjct: 1 MKSKIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +Q+++ +E PVI +TA + D+ R G + Y++KP M +K + Sbjct: 61 GFELVEQMRQ---YREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110] gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 243 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ L R + G+ + +G + + D+I++D+ + GL Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++ P+I +TA D + G + Y+ KP + + + + Sbjct: 70 VCRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126 >gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales bacterium SWAT-3] gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales bacterium SWAT-3] Length = 1129 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 60/114 (52%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 I +D +++++ ++ GY +G E +EL + KP+++++DI + +SG ++ + Sbjct: 727 IADDEPVSLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + ++P+I +TA D R + G Y+SKP + I ++ Sbjct: 787 TLRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL 840 >gi|75763996|ref|ZP_00743615.1| Transcriptional regulatory protein resD [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488517|gb|EAO52114.1| Transcriptional regulatory protein resD [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 156 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + +L + +E Y + NG ALE+A Q+ D+I++D+ + G+E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 66 VCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRA 122 >gi|186682033|ref|YP_001865229.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464485|gb|ACC80286.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 421 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N+ + + + G+ +G A+ A +++P++I++D+Q+ I G E Sbjct: 10 ILIVDDNPTNLSVLCAALNSEGFRFRVAVDGETAIAQAERNQPELILLDVQMPGIDGFET 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + Q IP+I TA A + + G YI KP + + ++ ++ Sbjct: 70 CRRLKANPATQNIPIIFTTALADTESKTKGFSLGAVDYIPKPFAQEEVIARVRVHL 125 >gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 222 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED ++ RD + G R+G EALEL + D +++D+ + + G Sbjct: 1 MDRILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDVLMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ S +P++ +TA + + R G + Y++KP SL++ + ++ I Sbjct: 61 FGVCRAVRRQS---SVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii] gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii] Length = 823 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 75/120 (62%), Gaps = 5/120 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60 K+V++VEDN +N K+ L++ G++ + +G+EA+E + D+++MDIQ+ + Sbjct: 689 KRVLLVEDNLVNQKVASRLLQKYGHVVITVTDGLEAVEALKSDHKAYDLVLMDIQMPGMD 748 Query: 61 GLEITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GLE T++I++D S +IP+I +TA AMKG ++ + G + Y+ KP + + TI+ Sbjct: 749 GLEATRRIRKDELGSGWHKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 808 >gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159] gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159] Length = 224 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ K+ + G+ + +G AL Q PD++I+D+ L G Sbjct: 1 MAHILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + ++ P++ +TA + D G + Y++KP + + ++ + Sbjct: 61 RDVCRALRLRHAT---PILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + ++ GY Q +G E L+ A K D+I++DI L +++G+E Sbjct: 8 RILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIMLPKLNGME 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + +IP+I +TA D G + YI+KP ++ + I+ + Sbjct: 68 VCRRIRQ---ISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKR 123 >gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 228 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+E L +E + ++ N EA+++ + + +++++DI + +I G+E Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++D + +P+I ++A + D+ G + YI+KP + + +K + Sbjct: 65 CMRIRKD---KNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119 >gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D+ +KL + G+ + +G EAL +++ D II+DI + + Sbjct: 1 MQKKILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + I++ +P++ ++A D+ + G + Y++KP S+ I+ Sbjct: 61 GLDVCRSIRKS---YNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANF 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|16264091|ref|NP_436883.1| putative histidine kinase protein [Sinorhizobium meliloti 1021] gi|307300056|ref|ZP_07579841.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] gi|307316591|ref|ZP_07596034.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|15140216|emb|CAC48743.1| putative two-component response regulator [Sinorhizobium meliloti 1021] gi|306897789|gb|EFN28532.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|306904945|gb|EFN35528.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] Length = 121 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 69/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE+N + + G+ L NG +ELA KPD+I+MD+ L + G Sbjct: 1 MTKILLVEDNEMNRDMLSRRLSRRGFDVLIAENGRAGVELAESQKPDLILMDMSLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++IK + IPVIA+TA AM D E + GC+ Y SKP+ L + I++ + Sbjct: 61 WEATRRIKANPLTSAIPVIALTAHAMASDREMALEAGCDDYDSKPVDLPQLVRKIEQLL 119 >gi|255689849|ref|ZP_05413524.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260624453|gb|EEX47324.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1373 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + + NG E + A H PD+I+ DI + + G+ + Sbjct: 1115 LIVEDNEEIQKYIAESFSDS-FAVITADNGEEGKQQALSHIPDIIVSDIMMPIMDGITLC 1173 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IP+I +TA D+E + G ++Y++KP S S+ I + Sbjct: 1174 RQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1228 >gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] Length = 245 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M K +++V+D +L + +GY +G EA+E+ + KPD+II+D+ L Sbjct: 1 MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I G +T++I+++ PV+ +TA D+ G + Y++KP SL + I Sbjct: 61 PDIDGFTVTRRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 117 KKYIGE 122 + + Sbjct: 119 RAILRR 124 >gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis] Length = 245 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M K +++V+D +L + +GY +G EA+E+ + KPD+II+D+ L Sbjct: 1 MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I G +T++I+++ PV+ +TA D+ G + Y++KP SL + I Sbjct: 61 PDIDGFTVTRRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 117 KKYIGE 122 + + Sbjct: 119 RAILRR 124 >gi|34557247|ref|NP_907062.1| two-component hybrid sensor and regulator [Wolinella succinogenes DSM 1740] gi|34482963|emb|CAE09962.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes] Length = 372 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++ V+D E+N+ + +++ Y + +G EALE+ + K D+I++DI + E+ G Sbjct: 6 ATILAVDDTEVNVDILMGILK--NYDVIPALSGKEALEIVKNEKIDLILLDIMMPEMDGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K + + IP+I +TA + D + + G Y++KP + + + ++ Sbjct: 64 EVCRRLKSEEATRSIPIIFITAKTTESDIKEGFERGAVDYVTKPFNPIELISRVDTHL 121 >gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 236 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L + G+ ++ E E + D+II+DI L SGL+ Sbjct: 6 HILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPVDLIILDIMLPGASGLD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ +P+I +TA D + G + Y+SKP + + I + Sbjct: 66 LCRDIR---RTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRR 121 >gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium resistens DSM 45100] Length = 231 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D++ + R + +GY + +G EALE+ +PD+ I+D+ + GLE Sbjct: 2 KILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRRDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + +IP++ +TA + G + Y+ KP +L + + A Sbjct: 62 VCRELRSHGD--DIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRA 119 >gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 242 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 55/119 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G + E A+ PD+II D+ + +G Sbjct: 16 RILLVDDEPGLRAAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGYA 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ED +L PVI +TA M D G + YISKP +K I Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134 >gi|78061250|ref|YP_371158.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77969135|gb|ABB10514.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 246 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E + PD+I++D+ + GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLDDGAPDLIVLDLMMPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|56477307|ref|YP_158896.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1] gi|56313350|emb|CAI07995.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1] Length = 227 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN + D ++ GYI ++G+ L LA + D+I++DI L + G + Sbjct: 2 RILVIEDNRDILVNVLDYLQLKGYIVDCAQDGLSGLHLAVTEQYDLIVLDIMLPGVDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED ++ P+I +TA D R G + Y+ KP +LS + I+ + + Sbjct: 62 VCKRLRED-AGRDTPIIMLTARDALDDRLRGLNAGADDYLIKPFALSELVARIEAILRRS 120 >gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ GY NG ELA D++I+D L ISGLE Sbjct: 2 RILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPHISGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I +Q++ PV+ +TA D G + Y+ KP L + ++ + + Sbjct: 62 ICQQMRSHDAT--TPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRRS 119 >gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 223 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I++D KL D E +GY + ++G EA+ A + PD+I++DI + EI+G Sbjct: 1 MKKILIIDDEADMRKLLADYFEVNGYHIMTAKDGNEAVRQAEKQ-PDIILLDINMPEING 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++I+ P++ +TA D+ + G + YI KP S+ + ++ Sbjct: 60 LDVCRKIRS---YVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 267 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY ++G AL+ Q D++++D+ L + G Sbjct: 43 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDG 102 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ IP++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 103 LEVARRLRAGGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 160 Query: 122 E 122 Sbjct: 161 R 161 >gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] Length = 232 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 + ++ +I +D L +E GY ++ +G EA+ + D++I+DI + ++ Sbjct: 1 MNRISILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+QI+ +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] Length = 239 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED++ R +E GY + G ALE A +PD++I+DI L + G Sbjct: 1 MPTILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ +Q++E S +P++ +TA + D + G + Y++KP S+ + +K Sbjct: 61 FQVCRQLREQS---TVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVK 113 >gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183] Length = 1343 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I EDN + + + S Y LQ NG EAL + ++ D+I+ D+ + + GL+ Sbjct: 1098 TILIAEDNTDIRQYLCEELGKS-YHILQASNGEEALAILKEQDTDLILTDVMMPVMDGLQ 1156 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + KQIK+ IPVI ++A ++ + G + YI KP S+++ IK Sbjct: 1157 LCKQIKQSLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMAMVAAKIKNLFR 1214 >gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + ++ G+ ++G AL+ R PDV+++DI + + GL Sbjct: 11 RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K++++D + P + +TA D+ G + Y++KP SL + I + + Sbjct: 71 LLKRLRQDGI--DAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRS 128 >gi|330962179|gb|EGH62439.1| sensory box protein/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 705 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D+ L L++ Y L +G ALE+ H PD+I++DI + + G Sbjct: 6 ATILIVDDDVHVRDLLEVLLQNQNYRTLTAESGEVALEMVELHAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K + IP+I ++A + + G E Y++KP+ S ++ + Sbjct: 66 EVASQLKANKSTANIPIIMLSALDQQSARLSGLEAGAEEYLNKPVDSSELWLRVRNLLR 124 >gi|309791916|ref|ZP_07686398.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308226034|gb|EFO79780.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 484 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 60/116 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN + DL+ Y NG E L+LA QH+PD++++D+ + + G Sbjct: 5 TILLIDDNPQIHSIISDLLRPLDYQIFAALNGQEGLDLAHQHRPDLVLLDVMMPGMDGFA 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + + ++ D++L ++PVI +TA +G R + G + +I KP + Sbjct: 65 VCQALRSDAQLSKVPVIMITALDDRGSRLRGFESGADDFIGKPFDTIELRARVATV 120 >gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + +L + + GY + N M+ L++ +++ ++++DI + + G+E+ Sbjct: 7 ILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNEIHLVLLDIMMPGMDGMEM 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E IP+I ++A + D+ G + Y++KP + +K + Sbjct: 67 CRKIRE---TNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRR 121 >gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] Length = 228 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + +VED+E +L ++ G+ N EA + PD+I++DI L ++ GLE Sbjct: 4 IYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNIKSDYPDLIVLDIMLPDMDGLEF 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K +K D + +EIP+I +TA + + D+ + G + Y++KP S+ + IK + + Sbjct: 64 CKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLKRS 122 >gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 234 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++D + L + GY + + +ALE + ++ D+ ++D+ + EIS Sbjct: 1 MQTKILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVMMPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI + I+E PVI +TA D+ + G + YI+KP + + +K + Sbjct: 61 GFEICRIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293] gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|115376893|ref|ZP_01464114.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115366072|gb|EAU65086.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 986 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +DN R L+E+ + +G EAL A PD+++ D+ + + G Sbjct: 617 HILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFA 675 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + +P I ++A A + + G + Y+ KP S + ++ + A Sbjct: 676 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 735 >gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1119 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 V+IV+D +N+++ R+ + Y + NG+EALE+ + PD+I++D+ + ++G Sbjct: 717 TVLIVDDEPVNLQVIRNNLALQNYAITEANNGIEALEMIEKGLMPDLILLDVMMPHMTGY 776 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++E E+P+I +TA + D G Y+ KP S + IK +I Sbjct: 777 EVAKKLREKYLHIELPIIMLTAKPLVSDLVEGFVSGANDYLIKPFSKQELLARIKIHIR 835 >gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC BAA-286] Length = 221 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I+ED + +E GY +G + +EL R KPD+I++D L ++ G Sbjct: 1 MQHILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ K I+++ IP++ +TA D + G YI KP S +E IK + Sbjct: 61 IDVCKAIRQEDI--NIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHFR 118 Query: 122 EA 123 + Sbjct: 119 NS 120 >gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase [Sulfuricurvum kujiense DSM 16994] Length = 428 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 +K++IV+D LN+ + +++ Y L NG +AL++ KPD+I++DI + ++G Sbjct: 7 QKILIVDDEPLNISIVAEILNHE-YDLLVATNGEKALQIVSLDPKPDLILLDIMMPGMNG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K++KE E +IP+I +TA + + G ++SKP + IK + Sbjct: 66 FEVAKRLKEIPETFQIPIIFLTAKHDSESIIKGFEAGAVDFVSKPFQKEELLARIKNTL 124 >gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 227 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V +VED E L R +E G+ G EA ++ PD++I+D L +S Sbjct: 1 MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + + R G + Y+ KP S + +K + Sbjct: 61 GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040153|gb|ACT56949.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 123 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 123/123 (100%), Positives = 123/123 (100%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS Sbjct: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI Sbjct: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Query: 121 GEA 123 GEA Sbjct: 121 GEA 123 >gi|330950940|gb|EGH51200.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7] Length = 709 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G AL + +Q PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGEMALAMVKQQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K + IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVATQLKAEKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M +K V+++ED + + + GY +G+ L R+ PD++I+D+ L Sbjct: 1 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++I++ P+I +TA D+ G + Y+ KP S+ + ++ Sbjct: 61 LDGLEVARRIRK---TSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRA 117 Query: 119 YIGE 122 ++ Sbjct: 118 HLRR 121 >gi|315500124|ref|YP_004088927.1| response regulator receiver modulated diguanylate cyclase [Asticcacaulis excentricus CB 48] gi|315418136|gb|ADU14776.1| response regulator receiver modulated diguanylate cyclase [Asticcacaulis excentricus CB 48] Length = 454 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 69/121 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D N++L + +E Y + +G EA+E A +PD+I++D+ + + Sbjct: 1 MTAKVLVVDDIPANVRLLQAKLEADYYDVVTAHSGQEAIETAIIEQPDIILLDVMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T+Q+KE +E + IP+I VTA + D + G + +++KP+ I +K + Sbjct: 61 GYEVTRQLKELAETRHIPIILVTALDGRDDRLSGLEAGADDFLTKPLDDVILFARLKALV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 58.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++D + + + + AL++A + D++++++ ++ L Sbjct: 157 VLILDDQVRQAERLMVALGEQ-HRCAYETDPKAALKIAL-GRVDLLVLNLAARDFDPLRF 214 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++PV+ + + + + G + +P+ + + + I Sbjct: 215 VAHLRSSELTRQLPVLGLFNPDERPTLLKGLELGVSDVLPRPVDIQELLARARGQIRR 272 >gi|94263964|ref|ZP_01287766.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455636|gb|EAT05818.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 302 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++ V+D+ +N+K+ D++ Y + G +AL +A PD+I++DI + E+ G Sbjct: 8 ATILAVDDSPMNIKILHDILNQD-YRVIFATGGADALTIAADSLPDLILLDIMMPEMDGY 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D Q IP+I VTA + DE + + G YI+KP++ ++ +K ++ Sbjct: 67 EVCRRLKADPRTQRIPIIFVTAMTEREDEAKGLELGAIDYITKPVNQAVVKARVKNHL 124 >gi|13471003|ref|NP_102572.1| response regulator [Mesorhizobium loti MAFF303099] gi|14021746|dbj|BAB48358.1| response regulator [Mesorhizobium loti MAFF303099] Length = 123 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 94/123 (76%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKVMIVEDNELNMKLFRDLIE SGY ++TRNG+EAL+LAR+H+PD+I+MDIQL E+S Sbjct: 1 MPKKVMIVEDNELNMKLFRDLIEASGYETVRTRNGLEALDLARKHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED +L IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKEDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+IVED + + + +E Y A+ T NG EA+++ +Q D +I+D+ L +SG Sbjct: 6 KRVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLMLPGLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI +I+ S ++P++ +TA + D+ G + Y++KP S M ++ + Sbjct: 66 EICNRIRLQS---DVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRR 122 >gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 222 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L D ++ +GY+ + +G+ AL ++ +PD+I++D + + G E Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALLRIQRRRPDLILLDAMMPGMDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIK+ + IPV+ +TA + G Y++KPI + + + ++ A Sbjct: 73 CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVTKPIQCNEMIARVASHLRTA 131 >gi|327405721|ref|YP_004346559.1| integral membrane sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] gi|327321229|gb|AEA45721.1| integral membrane sensor hybrid histidine kinase [Fluviicola taffensis DSM 16823] Length = 1052 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED E K + + Y ++ NG++ +E+A+++ PD++I D+ + E++G+E+ Sbjct: 804 VLVVEDQEQLRKFICECLGDQ-YRYMEAENGIQGVEMAKEYLPDILISDVMMPEMNGVEL 862 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++K + IP+I +TA + + D+E + G + Y++KP S++ ++ + Sbjct: 863 CGELKNNDLTSHIPIILLTAKSDQEDKEVGLEIGADDYLTKPFSVAELKLRVRNILR 919 >gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] Length = 230 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED + R +E SGY R+G+E + ++ + D+I++DI L +I G Sbjct: 1 MSKILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++S IPVI +TA + + ++ R + YI+KP S+ + + I + Sbjct: 61 FAVCELIRKES---NIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment'] Length = 683 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N L L+E +G+ G E L + + D+++MD+Q+ E+ G+ Sbjct: 379 RILLAEDNPVNRILAVRLLEKAGHTVAVAGTGREVLVTLEREQFDLVMMDVQMPEMDGIS 438 Query: 64 ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+E +P++A+TA AM GD ER G + Y+SKPI E I + Sbjct: 439 ATAAIRERERGSGAHLPILALTAHAMNGDRERCLAAGMDDYLSKPIQAKALYEAIARLCA 498 Query: 122 EA 123 A Sbjct: 499 RA 500 >gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D +E + L+ +G EA+++ + ++I+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+++S+ +P+I +TA + DE + G + YISKP S I + ++ + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 >gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 779 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 74/115 (64%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED++LN ++ +++ GY+ NG+EA+++ K D+I+MDIQ+ ++G+E Sbjct: 544 ILLVEDDKLNQQVIGRMLKERGYLVDIAGNGLEAIKMYENKKYDIILMDIQMPVMNGIET 603 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK I+E IP+IA+TA+A+KGD+E+ G + YI KP+ + I+ + Sbjct: 604 TKIIREKEIENHIPIIAITAYALKGDKEKFLSKGMDDYIPKPVKMDKLFNVIESH 658 >gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL + K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKIDEVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 227 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 3/125 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K K+++V+D +++ + GY + NG +A+ A++ P++IIMD+ + Sbjct: 1 MKKTQTKILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKELPELIIMDVMMA 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G+E + I++ EL + + +TA + + G + YI+KPI + + +K Sbjct: 61 EMDGMEACEHIRKIPELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVK 120 Query: 118 KYIGE 122 + Sbjct: 121 ALLRR 125 >gi|222054285|ref|YP_002536647.1| response regulator receiver modulated serine phosphatase [Geobacter sp. FRC-32] gi|221563574|gb|ACM19546.1| response regulator receiver modulated serine phosphatase [Geobacter sp. FRC-32] Length = 383 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 ++++V+D N++L +++ S Y + NG AL A PD+I++DI + ++ G Sbjct: 5 RILLVDDTPENLELLAEILGES-YATISAGNGEAALVAASTQPLPDLILLDINMPDMDGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++KED L+EIPVI ++ D+ + K G YI+KP + ++ Sbjct: 64 EVCRRLKEDPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQFDEMQARVTTHVR 122 >gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 234 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +IPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKMRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|149908632|ref|ZP_01897294.1| transcriptional regulator CpxR [Moritella sp. PE36] gi|149808466|gb|EDM68403.1| transcriptional regulator CpxR [Moritella sp. PE36] Length = 288 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ +L + + + +G L R ++ D++++D+ + +++G Sbjct: 62 MTKLLLIDDDRELAELLAEFLSLEDFDVDMVHDGEAGLAAIRGNQYDMVLLDVMMPKLNG 121 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++ D+ IPV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 122 FEVLKKLRVDN---NIPVLMLTAKGDEIDRVLGLEMGADDYLPKPFSERELLARIRAVLR 178 Query: 122 E 122 Sbjct: 179 R 179 >gi|71909165|ref|YP_286752.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71848786|gb|AAZ48282.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Dechloromonas aromatica RCB] Length = 384 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +++V+D N+ L +++ Y + +G++AL + R PD+I++DI + ++ G Sbjct: 12 TILVVDDTPFNLTLMSAVLKKH-YNVKEASSGIDALTMIRSGPLPDLILLDIMMPKMDGY 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +QIK D +PVI +TA DEE+ G YI+KPI + + IK ++ Sbjct: 71 EVCRQIKADPATANVPVIFLTANVSSDDEEKGFALGAVDYITKPIRQRVVLARIKTHL 128 >gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2] Length = 1235 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D+ LN ++ + + G NG +AL++ Q+ D+++MD+Q+ + GL Sbjct: 879 KKVLIVDDSILNREVASEFLLDVGIQVSTANNGQQALDMINQYHYDLVLMDVQMPVMDGL 938 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TKQ++++ +++P+IA+TA A D R G +++KPI + T+ ++I Sbjct: 939 TATKQLRKNPLHKQLPIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRWI 996 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 + ++V+DN + ++ D++ + G +G ++ +Q DV+ +D + Sbjct: 728 RALVVDDNAMAREVLADILTSLGLEVTTVADGYAGIDELEKACSKQTPYDVVFLDWNIPG 787 Query: 59 ISGLEITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110 I+G+E +I + + ++ VTA+ + E + ISKP+ S Sbjct: 788 INGVETASKIERNVHITKPAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDAS 840 >gi|330840625|ref|XP_003292313.1| hypothetical protein DICPUDRAFT_157014 [Dictyostelium purpureum] gi|325077455|gb|EGC31166.1| hypothetical protein DICPUDRAFT_157014 [Dictyostelium purpureum] Length = 1589 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 7/127 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57 +KV++ EDN +N KL + L+ G+ ++G +AL+ + K D I+MDIQ+ Sbjct: 1436 QKVLVAEDNTMNQKLIKTLLTKKGFDITIAKDGKQALDFYHESKVKSTLYDCILMDIQMP 1495 Query: 58 EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 ++GLE T I+E E IP+IAVTA AMKGD+E+ + G + Y++KPI+ + E Sbjct: 1496 NLNGLEATSAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1555 Query: 116 IKKYIGE 122 I IG+ Sbjct: 1556 INTQIGK 1562 >gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ + R +E Y NG +AL+ + D+I++DI L + GL + Sbjct: 8 ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGLSV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K +++ PV+ +TA D + G + Y++KP S++ M I+ + Sbjct: 68 LKHMRQAGL--NTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR 123 >gi|307155194|ref|YP_003890578.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985422|gb|ADN17303.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 358 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+DN N+ L + +E GY +G+ AL + PD+I++D+ + I G E+ Sbjct: 12 ILAVDDNPDNLFLIKLALEQEGYKVHLVEDGLTALAQIQYSPPDLILLDVMMPGIDGFEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+++ + IP++ +TA+ + + G + +I KPI + ++ + Sbjct: 72 TRRIRQNPNIPFIPILLITAY-EEPSLIQGLDVGADEFIRKPIQIDELQARVRSLLR 127 >gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + L ++ GY + NG +AL+ D++I+D+ L ++ Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA D+ G + YI+KP + + +K + Sbjct: 61 GFRICQKIREQYFY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|221199375|ref|ZP_03572419.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221205723|ref|ZP_03578738.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221211588|ref|ZP_03584567.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|221168949|gb|EEE01417.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|221174561|gb|EEE06993.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221180660|gb|EEE13063.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] Length = 241 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ + + GY LQ ++G L A PD++++DI L E++G Sbjct: 6 QRILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPELNGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K++++ ++ PV+ ++A M+ D+ G + Y+ KP L + IK + Sbjct: 66 DVLKELRQ--RGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRR 123 >gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V +VED E L R +E G+ G EA ++ PD++I+D L +S Sbjct: 1 MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + + R G + Y+ KP S + +K + Sbjct: 61 GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|186685002|ref|YP_001868198.1| AraC family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467454|gb|ACC83255.1| two component transcriptional regulator, AraC family [Nostoc punctiforme PCC 73102] Length = 289 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 70/126 (55%), Gaps = 6/126 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++++ED+ + LF +++E G+ + +G+ ++ A++H PD++I DIQ+ ++ G Sbjct: 6 SKKILVIEDDAVTRNLFLEVLEAQGFDTIGAEDGVAGIQKAQEHLPDLVICDIQMPDMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI----- 116 + ++++D IP I +T + D + + G + Y++KP S+ F+ I Sbjct: 66 YTVLARLRQDPHTAIIPFIFLTGSNTQTDVRKGMESGADDYLTKPSSIEDFLRAIAVRLE 125 Query: 117 -KKYIG 121 + ++ Sbjct: 126 KQAFLR 131 >gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 234 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +PV+ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614] gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614] Length = 240 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D+ + ++ + Y+ +G EAL+ A P +I++DI L E+ GL Sbjct: 4 QTILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALLCNPSLIVLDIGLPEMDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + ++ E+P++ ++A + D + G + Y++KP S + + + Sbjct: 64 DVCRHLR---RTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILKR 120 >gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++++ G+ G +A + ++ PD++++D+ L Sbjct: 1 MNARILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+E + +P+I +TA + D + G + Y+ KP + ++ + Sbjct: 61 GLEVCREIRE---ISSVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 244 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ +L + +G+ + +G A+E A +H+PD+I++D+ L + G Sbjct: 17 ARLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDGF 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S PV+ +TA GD G + Y++KP SL + I + Sbjct: 77 AVVRRLR--SGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRR 134 Query: 123 A 123 A Sbjct: 135 A 135 >gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 231 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + ++ + A++ NG +AL + KPD+ I+D+ L +I Sbjct: 1 MPGKILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E PVI +TA D+ G + YI KP + + +K + Sbjct: 61 GFTILQKIRETYTF---PVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 238 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED ++ + GY +G AL L +QH+PD++I+D L ++ GLE Sbjct: 7 TILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ + PV+ +TA + + D + G + Y++KP + + ++ + Sbjct: 67 VLRTIRQ---TKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR 122 >gi|107025470|ref|YP_622981.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|254249878|ref|ZP_04943198.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|105894844|gb|ABF78008.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|124876379|gb|EAY66369.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 246 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|270295181|ref|ZP_06201382.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274428|gb|EFA20289.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1303 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN +K + + Y L+ NG AL + + D+++ DI + E+ GLE Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLE 1112 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK D IP+I +TA A + + G + YI+KP ++ + I K I Sbjct: 1113 LCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKII 1169 >gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 227 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D E +L I+ GY + NG +AL++ D+ I+D+ + ++ G Sbjct: 1 MASVLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMADMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +I++ S IP+I ++A D+ G + Y++KP + + +K + Sbjct: 61 ITLCMEIRKKS---NIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML+K++IV+D + + +D + GY + NG EA+E + D+I++DI + I Sbjct: 1 MLEKILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|170737378|ref|YP_001778638.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819566|gb|ACA94148.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 246 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|160891726|ref|ZP_02072729.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492] gi|317478215|ref|ZP_07937381.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156859133|gb|EDO52564.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492] gi|316905608|gb|EFV27396.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1303 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN +K + + Y L+ NG AL + + D+++ DI + E+ GLE Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLE 1112 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK D IP+I +TA A + + G + YI+KP ++ + I K I Sbjct: 1113 LCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKII 1169 >gi|139439532|ref|ZP_01772964.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC 25986] gi|133775085|gb|EBA38905.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC 25986] Length = 259 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + +E GY +G A++LA + D+I++D+ L +++G Sbjct: 1 MARILIVEDEEKIARFVTLELEHEGYQVEHAADGRTAVDLALERNYDLILLDVLLPQLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++++ +++PVI VTA D+ G + Y++KP ++ I+ + Sbjct: 61 MEVLRRVRKH---KDVPVIMVTARDAVMDKVAGLDAGADDYLTKPFAIEELFARIRVALK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ N+KL L+E +GY ++ +G L+ Q+ PD+I++D+ + + +G ++ Sbjct: 3 ILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGFDV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ ++P+I ++A + D + G + Y+ KP S + ++ + Sbjct: 63 CRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRR 117 >gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1009 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N L L++ G+ + NG EA+ L +Q P +I MD+ + I G E Sbjct: 792 RILVVEDNPVNRLLLTTLLQDVGFEVREAENGQEAIALWQQWHPHLIFMDMHMPVIDGFE 851 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ IK+ V+A+TA A + GC+ +ISKP +ET+ KY+G Sbjct: 852 ATQYIKQSEVDAIPVVVAITASAFTEQRQNCIDAGCDDFISKPFRREQVLETLTKYLG 909 >gi|153010999|ref|YP_001372213.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] gi|223635114|sp|A6X580|DIVK_OCHA4 RecName: Full=Polar-differentiation response regulator divK gi|151562887|gb|ABS16384.1| response regulator receiver protein [Ochrobactrum anthropi ATCC 49188] Length = 123 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 93/123 (75%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLFRDLIE SGY ++TRNG+EAL+LAR+H+PD+I+MDIQL E+S Sbjct: 1 MPKSVMIVEDNELNMKLFRDLIEASGYETIRTRNGLEALDLAREHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKDDDELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ A G EALE ++ D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ+++ S +PVI VTA + D+ + G + Y++KP S + ++ + Sbjct: 61 TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + ++ GY +G+ L AR+ PD+I++D L ISGLE Sbjct: 5 RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K++++ ++P+I +TA D G + YI KP +L + ++ + Sbjct: 65 ICKRLRQTG--SKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121 >gi|38232907|ref|NP_938674.1| two-component regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199165|emb|CAE48790.1| two-component regulatory protein [Corynebacterium diphtheriae] Length = 233 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 59/120 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +++ +E G+ L + +L +++ D++I+D+ L + SG Sbjct: 5 RVLVVDDEPQMVQIISYALELEGWEVLSASSAQRGWQLLNEYRCDLVILDVMLPDASGYA 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ ++ PVI +TA + + G + Y++KP S + + + + Sbjct: 65 LCERIRAAGDVAGTPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRRS 124 >gi|325971498|ref|YP_004247689.1| transcriptional regulator [Spirochaeta sp. Buddy] gi|324026736|gb|ADY13495.1| two component transcriptional regulator, winged helix family [Spirochaeta sp. Buddy] Length = 224 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L R + ++GY L+ +G +AL++ D+II+DI + + G Sbjct: 1 MNTILVVEDDSDIRELERYTLTSNGYAVLEAEHGKQALQVLGTQTVDLIILDIMMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L K ++ S P+I V+A + D + G + Y++KP S+++ I+ + Sbjct: 61 LSFIKTLR-FSLNDTTPIIVVSAKGDESDIITALELGADDYLTKPFSMNVLSSKIRAVLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + +D E GY + NG EA+E + D+I++DI + I Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] Length = 236 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + R +E + + ++T N +A L +PD++++D L SG+E Sbjct: 5 KILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDERPDLVLLDWMLPGGSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K + IPVI +TA + + + + + G + Y++KP + + IK + + Sbjct: 65 LLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRRS 124 >gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus ATCC 19977] gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus] Length = 247 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV++V+D ++L ++ G+ +G AL+LAR +PD +I+D+ + + G Sbjct: 21 AKVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMPGMDGF 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 81 GVLRRLRADGI--DAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRR 138 Query: 123 A 123 + Sbjct: 139 S 139 >gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1152 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN++N + + ++ GY L NG EALE + + D+I+MDIQ+ + GLE Sbjct: 905 TVLLVEDNQVNQMVAKGILRKLGYKTLVVENGQEALEFLAEKQVDIILMDIQMPVMDGLE 964 Query: 64 ITKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ D + + P+IA+TA AMKGD E+ G + YI+KPI + + Sbjct: 965 ATRRIR-DGRHKVLDPGAPIIAMTARAMKGDREKCLDAGMDDYITKPIDPAALAAVMASR 1023 Query: 120 IGEA 123 +G A Sbjct: 1024 LGGA 1027 Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 7/127 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 KK++IV+D +++ G + + G ALE ++ + +++D + Sbjct: 758 KKILIVDDCPATRTSISLILQQWGCLCREASGGRSALEQLQRAVDKHAPFNAVLVDQAMP 817 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTA-FAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++ G + + IKE+ + +A+ A G + A ++KP+ + Sbjct: 818 DMDGSALIQSIKENPAYEGAR-LALMAPLGAPGLKAAKSNQDAAAVLTKPVRKKQLYNLL 876 Query: 117 KKYIGEA 123 G A Sbjct: 877 LDLFGNA 883 >gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1358 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +K+++V+D+ N+ ++E G + R+G+E LE ++ D ++MDI + + G Sbjct: 1239 RKILLVDDDMRNVFALSSVLEERGINIVVARDGIECLEKLKEQDHFDAVLMDIMMPRMDG 1298 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+++ + +++P+IA+TA AMKGD + + G Y++KP+ + ++ ++ Sbjct: 1299 YEAMQEIRKNIQHKKLPIIALTAKAMKGDRSKCIEAGASDYLAKPVDADKLISMLRVWL 1357 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 6/125 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K ++I+ED+E ++ RD+ G+ + +G L LA + P II+DI L I G Sbjct: 970 SKSLLIIEDDENFSRVLRDIGRDRGFACILASDGETGLALADHYTPSAIILDIGLPGIDG 1029 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKK 118 + +++K++S+L+ IPV ++A D + G Y++KP+S+ + ++ Sbjct: 1030 WTVMERLKDNSKLRHIPVHFMSASDSSMD---AMRMGAIGYLTKPVSMEKVEETLAKLEN 1086 Query: 119 YIGEA 123 I + Sbjct: 1087 VISRS 1091 Score = 86.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+++ + +LI S +G A+ + + D +I+D+ L ++SG Sbjct: 1093 KRLLLVEDDKIQRESIIELIGNSDVKTTAVDSGAGAILELNRERYDCMILDLGLGDMSGF 1152 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++I++ L +P+I T + EE E I K + S ++ Sbjct: 1153 ELLEKIRQSESLYRLPIIIYTGRDLTQTEEAQLNKYAETIIVKGVKSPERLLD 1205 >gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I++D E+ +K + + GY +G E LE + D++I+D+ L +I G Sbjct: 1 MENILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + K+++ IP+I +TA D+ + G + Y++KP + + I+ Sbjct: 61 LTLCKEVRS---FSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 222 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I+ED E KL RD S + L+ +G++AL++ +++ D++I+DI + + G Sbjct: 2 KILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMIPYLDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+++S+ +P+I +TA + D+ + G + Y++KP S + + +K + + Sbjct: 62 VCKSIRQNSK---VPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRS 118 >gi|158333299|ref|YP_001514471.1| diguanylate cyclase [Acaryochloris marina MBIC11017] gi|158303540|gb|ABW25157.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017] Length = 343 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + + G+ +G AL+ PD+I++DIQ+ ++GLE Sbjct: 10 ILIVDDVPTNLTILAQTLRDQGFTVWVATSGNAALKQLAHGLPDLILLDIQMPGMNGLET 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K D Q+IPVI ++A + + ++ G YI+KP + + +K ++ Sbjct: 70 CAKLKADLRTQDIPVIFMSALSEQANKVEGLSLGAVDYITKPFQEAEVLARVKVHL 125 >gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ + + R +E GY + +G+ LE AR+ +PD++I+D+ L + G Sbjct: 3 MSTILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVMLPRLDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++SE +P++ +TA + D + G + Y++KP SL + ++ + Sbjct: 63 FSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] Length = 1259 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DNE+N + ++++++ G+ NG +A+E + + D+++MD ++ E+ G Sbjct: 989 ILVVDDNEINRIVAKEILQSEGFQVSLAENGRQAVEKIQSGQFDLVLMDCEMPEMDGFAA 1048 Query: 65 TKQIKE-----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ EL +P++A+TA A+ GD+ER G Y+ KP++ S ++TI Sbjct: 1049 TRMIRNLAENGHPELANLPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTIVDC 1108 Query: 120 IGE 122 + Sbjct: 1109 LSR 1111 Score = 87.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 +V+ V+DN +N+++ ++ +++ G NG AL L R + I+D + E Sbjct: 841 RVLAVDDNHMNLQVIKEQLQSWGVEVSTAGNGRRALALLEDAAKRNVPYQLAILDHLMPE 900 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL + I + L E ++ +T++ ++K + KP+ + ++ + Sbjct: 901 LDGLRLAHLINDHQMLHETRLLMLTSYEHTIPHAELKKLEMV-CLPKPVRQTRLLDALVA 959 Query: 119 YIGE 122 GE Sbjct: 960 LTGE 963 >gi|67924947|ref|ZP_00518336.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853208|gb|EAM48578.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 122 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L L++ +G+ +G EALE + PD+II+D+ + ++G Sbjct: 1 MPTILVADDSPAQRELIAGLLKENGFSVATAIDGAEALEKLKSLAPDLIILDVVMPNLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + IK D + + IPVI + + D K G +AYI KP + T+K+ + Sbjct: 61 YQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIVKPFPHDELLGTVKQLLR 120 Query: 122 EA 123 + Sbjct: 121 NS 122 >gi|332879261|ref|ZP_08446958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682681|gb|EGJ55581.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1414 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED++ + ++ + ++ R+G+E + AR PD+I+ D+ + + G+ Sbjct: 1156 KKILVVEDHDEFRHFLMEQLQKD-FCVVEARDGVEGEQAARTELPDLIVSDLMMPRMDGM 1214 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D + IP I +TA + + G ++YISKP + + I++ I + Sbjct: 1215 ELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIEQ 1274 >gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] Length = 233 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDNE + GY + +G + E + + D++I+D L + G+ Sbjct: 2 KILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERWDLLIVDWMLPIMDGVT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E L ++P+I +TA + D+ + G + Y++KP S M IK Sbjct: 62 LCRKIRE---LSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRR 117 >gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 235 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IV+D + L ++ GY + NGM+AL+ D+ I+D+ L +I Sbjct: 1 MSEQILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA D+ G + YI+KP + + +K + Sbjct: 61 GFRICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122] gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122] Length = 238 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +D+ +++ L+ + GY R+G+EAL LAR H D+ I+D+ + + SGL Sbjct: 11 ARILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR-HPFDLAILDVMMPKASGL 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ P++ +TA + D+ G + Y+ KP S + +K + Sbjct: 70 EVCERLR---LSSNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRR 126 >gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +MIV+D + ++ +++ GY + +G AL L + PD+I++DI++ + G Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ IPVI ++ D+ + G + Y++KP IK I Sbjct: 61 LEVCREIRSQL---SIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIR 117 >gi|330968269|gb|EGH68529.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 783 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N + + ++ G + + +G EALE D+++MD + + G Sbjct: 660 ARVLLVEDNPVNQLVAKGILSKLGCEVIISSHGGEALEQLEHGHFDLVLMDCNMPVMDGY 719 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++QI+ +P++A+TA AM + ER + G Y++KP + + ++I Sbjct: 720 EASRQIRSSGRWPNLPIVALTANAMPDERERCKAAGMNDYLAKPFRRTELAGILDQWI 777 >gi|291519045|emb|CBK74266.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 223 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEIS 60 +KK+++V+D E + R E GY + +GM+A++ +++ DVIIMD+ + E+ Sbjct: 1 MKKILVVDDEEKIRSIIRKYGEFEGYEVSEACDGMDAIQKVKENSDYDVIIMDVMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +IK+ +++IPVI ++A + D + G + Y+ KP S M + Sbjct: 61 GFSACSEIKK---IKDIPVIMLSARGEEYDRIHGFEAGVDDYVVKPFSPKELMMRVNVVT 117 Query: 121 GEA 123 + Sbjct: 118 SRS 120 >gi|220906186|ref|YP_002481497.1| response regulator receiver protein [Cyanothece sp. PCC 7425] gi|219862797|gb|ACL43136.1| response regulator receiver protein [Cyanothece sp. PCC 7425] Length = 406 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +N L +E G+ + NG +AL+L D++++D+ + +++GLE Sbjct: 175 KILVVDDTLINRDLLSRRLERQGHTVKLSENGQQALQLLESQSFDLVLLDVIMPKMNGLE 234 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K+ ++IPVI ++A R + G E Y++KP + + IK + Sbjct: 235 LLRLMKDTPNWKDIPVIMISALDEVESAVRCIELGAEDYLTKPFNTILLKARIKACL 291 >gi|119493837|ref|ZP_01624404.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452429|gb|EAW33618.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 374 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 63/115 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED ++ D++E + + NG E + LA +H PD++I D+ + E+ G Sbjct: 1 MKRILVIEDESDVREIILDILEAEEFSVIGAENGKEGVRLALEHLPDLVICDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++ K ++E+ IP + +TA A + + + G + Y++KP S + I Sbjct: 61 YDVLKILREEKTTSTIPFVFLTAKATRENIRQGMNLGADDYLTKPFSRKDLLGAI 115 >gi|302188802|ref|ZP_07265475.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642] Length = 705 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G AL + ++ PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ QIK + IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQIKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|295103423|emb|CBL00967.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 224 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +D + + E+ G+ L NG EAL+ + PD+I++DI + Sbjct: 1 MNAKILIADDESDIVSMLGSFFESKGFRVLPAFNGAEALKQVEKQ-PDIILLDINMPGTD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+I+ + P++ +TA D+ + G + YI KP SL ++ ++ Sbjct: 60 GLEVCKRIR---DHISCPILFLTARIEDTDKVKGFTVGGDDYIVKPFSLMELEARVRAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ GY +G LE A + D++++D+ L +SG Sbjct: 1 MAKILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ +S+ +P+I +TA D+ G + Y++KP ++ + I+ + Sbjct: 61 IEVCRRIRMESQ---VPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae] gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae] Length = 231 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++I +D+ L +E GY ++ +G E +++ + D++I+DI + ++ Sbjct: 1 MKNITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T++I+E +P+I ++A D+ + G + Y++KP + + Sbjct: 61 DGFEVTRRIREK---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|134292232|ref|YP_001115968.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135389|gb|ABO56503.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 246 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E L PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSVAANGREMRNLLDDGAPDLIVLDLMLPGEDGLA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + +PV+ +TA + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GRFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|300867489|ref|ZP_07112140.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334483|emb|CBN57308.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 427 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K ++IV+D N++ L+ GY + NG AL + PD+I++DI + Sbjct: 1 MTKTADILIVDDTPDNIRFLSSLLVEQGYNVRKALNGKMALTAVKAVLPDLILLDINMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ + +K D++ +PVI ++A D+ + + G YI+KP L + I+ Sbjct: 61 MNGYEVCEHLKNDAKTSAVPVIFLSALDGVVDKVKAFQIGGVDYITKPFQLEEILARIQS 120 Query: 119 YI 120 + Sbjct: 121 QL 122 >gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E +L +D +E SG+ NG L+ A + D++I+D+ L + G Sbjct: 1 MSRILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++++E + P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICRKVRE---AKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218781447|ref|YP_002432765.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218762831|gb|ACL05297.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 242 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED + +E +GY +G+EALE R PD+I++DI L +I GL Sbjct: 10 RRILVVEDEAHIADGLKLNLELNGYEVEIAVDGVEALEKYRFWGPDLIVLDIMLPQIDGL 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + Q IP++ ++A D+ G + Y+SKP +L F+ +++ I Sbjct: 70 SVLRNIRLND--QHIPILILSAKGAPEDKITGFSYGTDDYLSKPFNLQEFLLRVERLISR 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|84387714|ref|ZP_00990730.1| Response regulator [Vibrio splendidus 12B01] gi|84377397|gb|EAP94264.1| Response regulator [Vibrio splendidus 12B01] Length = 242 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 ++++V+D++ +L + + SG+ +G+E + Q PD+I++D+ L G Sbjct: 6 RILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 66 TLCQRVRKQS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122 >gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13] Length = 230 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D + ++ G L+ ++G+EALE+ +++ +I++D+ + + G+ Sbjct: 5 TVLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVMMPRLDGIS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ + G + Y++KP + + +K + Sbjct: 65 ATHRIREE---KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120 >gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] Length = 227 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML K+ +VED E L R +E+ GY G EA ++ PD++I+D L +S Sbjct: 1 MLPKIAVVEDEEALSVLLRYNLESEGYEVETILRGDEAELRLQERVPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ + + +P+I +TA + + R G + Y+ KP S M +K + Sbjct: 61 GIELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|300726984|ref|ZP_07060404.1| putative histidine kinase [Prevotella bryantii B14] gi|299775707|gb|EFI72297.1| putative histidine kinase [Prevotella bryantii B14] Length = 1366 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D++ + R+ + Y ++ NG ALE +H+P +I+ D+ + + G E Sbjct: 1112 VLLVDDSDDFREFMREELSDH-YEVVEAENGKVALEKIAEHRPHIILSDVMMPVMDGNEF 1170 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + IPVI +TA + + G + YI+KP S+ + + + Sbjct: 1171 CRLLKGNPATANIPVIMLTARLTMLQKIEGLEHGADDYITKPFSMDLLRLRMANLM 1226 >gi|296272695|ref|YP_003655326.1| response regulator receiver modulated diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] gi|296096869|gb|ADG92819.1| response regulator receiver modulated diguanylate cyclase [Arcobacter nitrofigilis DSM 7299] Length = 290 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++V+D +N+K+ +L+ Y + G A+ +A +PD+I++DI + + G Sbjct: 1 METILVVDDTNINIKILVELLGDK-YDIIVAIGGESAINIASSEQPDLILLDIMMPVMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K++ + +IP+I +TA + ER + G YI KP M +K ++ Sbjct: 60 FEVCRRLKQNPKTNDIPIIFLTAKTDEDSIERAYEMGGSDYILKPFKPKELMARVKTHL 118 >gi|75909821|ref|YP_324117.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703546|gb|ABA23222.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 393 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ N+ L + ++E GY NG+ AL + D++++D+ + + G E Sbjct: 10 KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDGYE 69 Query: 64 ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++++ + +LQ+ IP++ +TA + G + +I KP+++ + ++ + Sbjct: 70 VTRRVRGEMKLQQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127 >gi|186681324|ref|YP_001864520.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463776|gb|ACC79577.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 379 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ N+ L + ++E GY NG+ AL + D++++D+ + ++ G E Sbjct: 10 KILVVDDSPDNVFLIKTILEEEGYTISTAENGISALAELKASPCDLVLLDLMMPDMDGYE 69 Query: 64 ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +TK I+ D +L + IP++ +TA + G + +I KP+++ + ++ + Sbjct: 70 VTKHIRGDMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127 >gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] Length = 231 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D L ++ ++ + + EA + + D+ ++DI + +IS Sbjct: 1 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+I+E P+I +TA + D+ + G + YI+KP + +K + Sbjct: 61 GLELCKKIRERYNY---PIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E K ++ GY +G L+ A ++ DVI++D+ L E++G Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E ++ P+I +TA D G + Y+ KP ++ + I+ + Sbjct: 61 LEVARRLRE---TKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60 +K+V+IVED E + ++ +G+ ++ +G EAL + + K D++++DI L I Sbjct: 1 MKRVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+ +E++ I VI +TA + + D+ G + YI KP S + I + Sbjct: 61 GYKVLKKTRENN--SSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272] gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272] gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLL 117 >gi|254507777|ref|ZP_05119908.1| response regulator [Vibrio parahaemolyticus 16] gi|219549302|gb|EED26296.1| response regulator [Vibrio parahaemolyticus 16] Length = 240 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEI 59 M K+++V+D++ +L + + SGY+ +G + L L + P+++++D+ L Sbjct: 1 MSAKILVVDDDQEIRELLDEYLTKSGYLVDTVADGEQLKLHLEQTGYPELVLLDVMLPGD 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + + I+ +S +P+I +TA + + D+ + G + YI+KP + + IK Sbjct: 61 DGFTLCQYIRRES---SVPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|206564292|ref|YP_002235055.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198040332|emb|CAR56317.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 246 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|220909913|ref|YP_002485224.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219866524|gb|ACL46863.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 406 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D N L ++E GY +G EAL P ++++D+ + E+ G E Sbjct: 14 KILVADDAPDNRFLIEAILEEQGYALDFAEDGREALTKIEAAPPQLVLLDVMMPEMDGYE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++++++ L IP++ +TA+ + G + +I KP+ ++ + Sbjct: 74 VTRRVRQNPNLSYIPILLITAY-EQVTVAAGLDTGADDFIRKPLEPEELSARVRSLLR 130 >gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 235 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++ ED E ++ + +E GY NG +AL+ ++ + +++I+D+ + EI G Sbjct: 5 KRILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ E E+P++ +TA D+ K G + Y++KP +L + + + Sbjct: 65 VVAETIR--LENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 229 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + ++ + + NG +ALE A++ D+ I+DI L + G E Sbjct: 7 RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLPGMDGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ ++A + D+ + G + Y+SKP L + ++ + Sbjct: 67 LCRRLRS---FTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRR 122 >gi|189424183|ref|YP_001951360.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189420442|gb|ACD94840.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 452 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ N+ + RD + Y L +G A++ A +PD+I++D+ + I G E Sbjct: 18 ILVVDDDANNLAVVRDCLVAFNYTILVAEDGESAVKRADYARPDLILLDVMMPGIDGYET 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K IPV+ +TA A G++ + + G YI+KP + I ++ Sbjct: 78 CRRLKALKSTHAIPVLFMTALAETGNKVKGLEAGAVDYITKPFQREELLARIAVHL 133 >gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 909 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D E N L ++ + +Q NG EA+E D+I+MDIQ+ + G Sbjct: 787 SARILVVDDTEDNRFLLLTYLKKLPFEVVQAENGKEAVEKVLAEPFDLILMDIQMPVMDG 846 Query: 62 LEITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T++I++ + L+ IP+IAV+A AM D ++ GC +++KPI S +E I + Sbjct: 847 YAATRKIRQWEKDQGLKPIPIIAVSANAMAEDMQKSLDVGCSEHVTKPIKKSALLEMIHR 906 Query: 119 YIG 121 Y+G Sbjct: 907 YLG 909 >gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ +L ++ Y R+G EAL L ++ K D+I++D+ L +++ Sbjct: 1 MQKRILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I+E ++PV+ ++A D+ G + YISKP S+ ++ I Sbjct: 61 GMELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 247 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ +GM A+ ARQ +PD +++D+ L ++ G E Sbjct: 22 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGFE 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ED +PV+ +TA + G + Y++KP SL + ++ + + Sbjct: 82 VLRKLREDDAT--VPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 139 >gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 234 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IV+D+ +L +E G+ + +G++AL + K D+ I+DI + + Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIEEVKVDMAILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ ++P++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDLCYELRK---YYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1200 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V+I +D+ N+ +E L +G EAL+ +++ DV+++D+ + ++ G Sbjct: 1078 KTVLIADDDVRNIFSLSKSLENYKMNVLTALDGKEALQKLQENPSVDVVLLDMMMPQMDG 1137 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K+I+E+ + + +PVIAVTA AM GD E+ G YI+KP+ + M ++ ++ Sbjct: 1138 YETAKRIRENPQWRNLPVIAVTAKAMTGDREKCINAGASDYITKPVDIDQLMSLLRVWL 1196 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVED+ K D GY + + G E LELAR KP I++DIQL +SG Sbjct: 809 KTILIVEDDTFFAKSLLDYTRKQGYKGIVSVRGDEGLELARTFKPMGILLDIQLPVLSGW 868 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI---SLSIFMETIKKY 119 E+ Q+K D E + IPV +++ M + + G +I KP+ + I+ Sbjct: 869 EVMDQLKNDPETRHIPVHIMSSHRM---KNESLQKGAIDFIDKPVAIEKMDEIFRKIEYV 925 Query: 120 IGE 122 I + Sbjct: 926 ISK 928 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 51/104 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KKV+IVEDN ++ K + T + + E ++ ++ D +I+D+ + + Sbjct: 930 SKKVLIVEDNSMHAKALAYFLGTFEIHSELKSDIHEGIQALSGNEVDCVILDMGIPDKKA 989 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ ++ K++ + IP+I T ++ EE K ++ I K Sbjct: 990 YDMLEEAKKNPGFEHIPIIIFTGKSLSMTEELRIKQYADSIIVK 1033 >gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 299 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D L ++ ++ + + EA + + D+ ++DI + +IS Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+I+E P+I +TA + D+ + G + YI+KP + +K + Sbjct: 129 GLELCKKIRERYNY---PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQL 185 Query: 121 GE 122 Sbjct: 186 RR 187 >gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 227 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED +L D ++ + Y QT + A+ LAR+ +++D+ L + G Sbjct: 1 MSRILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALAREQSFQAVLLDLMLPDGDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K I++ S +P++ VTA + D + G + YI KP S + +K + Sbjct: 61 MEVCKAIRQHS---NVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|161899047|ref|YP_198017.2| response regulator PleD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 458 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N+KL ++ Y + + EA++L + +PD+I++DI + +I+ Sbjct: 1 MTARILVVDDVPSNVKLLEARLKAEYYTVIVAHDSEEAIDLVAKQQPDIILLDIMMPKIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K +K IP+I VTA D + G + +++KPI + IK Sbjct: 61 GFKVCKNLKSTPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPIDETALSARIKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 53/113 (46%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+++ + ++++ + + MEAL++ + D+II D+Q E GL + Sbjct: 159 ILVVDEDIFQAEQIHNVLKQRFKLINILNDPMEALKVGIEDNYDLIISDMQFSETDGLRL 218 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + E + P++ ++ K + + G Y++ P+ S + + Sbjct: 219 CSEFRSKVETRYTPILILSEDYNKNNLVKALDVGANDYLTVPLDESELIARVN 271 >gi|75910334|ref|YP_324630.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75704059|gb|ABA23735.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 440 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+DN N+K+ D I + G+ AL +G A+E A +PD+I++D+ + I G Sbjct: 10 ATILIVDDNPTNLKVLSDAISSLGWEALIATDGESAIEEAEYAQPDIILLDVMMPGIDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K+ S + IPVI +TA + D+ G YI+KP +L + I+ ++ Sbjct: 70 QTCTELKKKSSTKHIPVIFLTALTDQFDKVLGLVTGGVDYITKPFNLDEVLARIQVHL 127 >gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184] gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184] Length = 347 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ D ++ GY+ + +G +AL+ + PDV+++D + ++ G E Sbjct: 37 ILIVDDTPENLAFLSDTLQARGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 96 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +IK+D + +PVI +TA R + G Y++KP+ I ++ + Sbjct: 97 CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 155 >gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+I+ED + + + ++ Y A+ T NG EA+ + +Q D +I+D+ L ++SG Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K+I+ S+ +P++ +TA + D G + Y++KP S + ++ + Sbjct: 66 EICKRIRLQSQ---VPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRR 122 >gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1259 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + + + NG E L LA++H P++II D+ + + G+ + Sbjct: 1014 ILVVEDHTDLRDYIAETL-KEKFQVIVAANGQEGLRLAKEHMPELIITDLMMPVMDGMSL 1072 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++E+ IP+I +TA D + G +Y++KP S + + I+ + Sbjct: 1073 SRKLRENIHTSHIPIILLTAKDTTEDRIEGYELGIASYLTKPFSAQLVISRIENLL 1128 >gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 224 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + ++ + + +G EALE D+II+DI L +++G E Sbjct: 2 KILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ + E PV+ +TA D+ + G + Y+ KP + I+ + Sbjct: 62 VVKNLRANKN--ETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118 >gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44] gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44] Length = 243 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L R + G+ + +G + + D+I++D+ + GL Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + I + Sbjct: 70 ICRRLRSAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 >gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493] gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493] gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] Length = 245 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + G+ A ++G E + + D++I+DI + GL Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ +S IP++ +TA + + D + G + Y+SKP + + ++ + + Sbjct: 66 LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122 >gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+D E L +E GY L+ ++G EA++L ++ D++++DI + E+ G Sbjct: 1 MKTILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHVDMLLLDIMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE ++I+E +P+I +TA D + G + Y++KP + + + Sbjct: 61 LETCRKIRE---FSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 237 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + L + SG+ + +G EA H D++++D+ L SG Sbjct: 1 MATILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVMLPGKSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++T++++ E IP+I +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 VDLTRELR--GEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|304391595|ref|ZP_07373537.1| response regulator PleD [Ahrensia sp. R2A130] gi|303295824|gb|EFL90182.1| response regulator PleD [Ahrensia sp. R2A130] Length = 457 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + + + NG +A+ + + + DVI++D+ + + Sbjct: 1 MTARILVVDDVEANVRLLEARLLAEYFEVVTASNGPDAIAICQAGRCDVILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++K D + IP+I VTA D + G + +++KP+ +K Sbjct: 61 GYEVCTRLKADPKTAHIPIIMVTALDQASDRVQGLDAGADDFLTKPVDDLAMTTRVKSLA 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 88.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + + T + + E L A D II+ + ++ L Sbjct: 157 KILIVDDRASSYERSVNALTTE-HSVAVVTDPQEGLFRAADDDFDAIIISLGIENFDPLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P++ V + R G YI++P+ ++ ++ + Sbjct: 216 LCSQLRSLDRTRLVPILLVAQKEDQAVLIRAIDLGVNDYITRPLDVNELRARVRSQVRR 274 >gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV++V+D KL +D + GY L+ +GMEA+++ + K ++I+D+ + ++ G Sbjct: 5 KVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+E ++P+I +TA + + DE + + G + YISKP S I + + + Sbjct: 65 QVCREIRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121 >gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1225 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Query: 3 KK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+ ++IVED N L L+ G+ + +G EA+E+ +PD+I+MD+++ ++G Sbjct: 1007 KRSILIVEDQPNNRLLMIKLLSEIGFEVREASSGQEAIEICSTWQPDLILMDMRMPVMNG 1066 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+QI S ++ +IA+TA + +++ I GC+ +I KP +E I+KY+G Sbjct: 1067 FEATQQINAMSFAKKPIIIALTANTFEAEKQAIFNAGCDDFIGKPFQREELLEMIRKYLG 1126 >gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 239 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + L R + G+ L G ALELA +PD++I+D+ L +I G E Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPDIDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ D +PV+ ++A D+ G + Y++KP ++ + ++ + Sbjct: 66 ICRRLRADGH--PVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRR 122 >gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5] gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + GY+ L+ +GMEA++L + K ++I+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+E S+ +P+I +TA + + DE + G + YISKP S I + ++ + Sbjct: 65 QVCREIREHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED +L ++ +G+ + N A + + P ++++D L + SG Sbjct: 21 MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSG 80 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + +I+ D +LQ++ VI +TA +M+ D+ G + YI+KP S IK + Sbjct: 81 LHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLR 140 Query: 122 E 122 Sbjct: 141 R 141 >gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 67/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D++ L ++L+E G+ + +G +AL++ + D++++D+ + + +G Sbjct: 1 MNKILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIV-DNTIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|256821452|ref|YP_003145415.1| response regulator receiver protein [Kangiella koreensis DSM 16069] gi|256794991|gb|ACV25647.1| response regulator receiver protein [Kangiella koreensis DSM 16069] Length = 121 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ + ++E +G+ + +G + A+ + PDVI+MD+ + ++G Sbjct: 1 MARVLIVDDSPTEAHILTGMLEKNGHQVITAPDGESGIVSAKANHPDVILMDVVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+Q+K+D IP+I V+ + D + G YI+KP+ + +E++ +G Sbjct: 61 FQATRQLKKDPATSSIPIIIVSTKSQATDRVWGMRQGANDYITKPVDEASLLESVNNVLG 120 >gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL++ + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQIL-DNTIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] Length = 225 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + G+ ++ +G EA+++ ++++D+ + ++ G Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K I++ ++PVI +TA + + DE + G + YISKP S I + + + Sbjct: 65 EVLKTIRK---YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|189465368|ref|ZP_03014153.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM 17393] gi|189437642|gb|EDV06627.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM 17393] Length = 1295 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ ++DN+ +L + ++ Y N ++ LEL + D+II DI + +++GLE Sbjct: 1050 ILFIDDNKDLRELIQHILSKK-YQIFIAENALQGLELLKSTPVDIIICDIMMPQMNGLEF 1108 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QIK D + IP+I +TA D+ K G E+YI+KP + I I + Sbjct: 1109 CRQIKGDIQTNHIPIIMLTAKNAVDDQIECYKAGAESYIAKPFEMKILQARIDNLL 1164 >gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 1370 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG + ++ H +++MD+ + E+ G Sbjct: 1250 RTVLVVDDDARNLFALSGILELHGFQVLHAENGRKGVDTLLAHPEVCLVLMDVMMPEMDG 1309 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ ++P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1310 YAATAEIRGLPRYADLPIIAVTAKAMPGDREKSLLSGASDYVTKPVDAGELIARVRRWL 1368 >gi|320324907|gb|EFW80979.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. glycinea str. B076] gi|320329273|gb|EFW85270.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. glycinea str. race 4] Length = 645 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCKVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y++KP + + + +++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634 >gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei 87.22] gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1424 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 + V++V+D+ N+ ++E G+ L NG +E+ H PD +++MD+ + E+ Sbjct: 1304 RTVLVVDDDARNLFALSGMLELHGFQVLHADNGRRGIEMLLAH-PDISLVLMDVMMPEMD 1362 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G T +I+ + E+P+IAVTA AM GD+E+ G Y++KP+ + + +++++ Sbjct: 1363 GYSATSEIRSMPQYAELPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTNDLIGRVRRWL 1422 Score = 55.1 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 21/134 (15%) Query: 3 KKVMIVEDNELNMKLFRDLIETS------------GYIALQTRNGMEALELARQHKPDVI 50 +++++VED L + E + + EA + + Sbjct: 1144 RRLLVVEDRP--RGLLTLVAERAVADLAPGDDPPGAIDIITAIGAQEAASMLAAEPCHCV 1201 Query: 51 IMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE----AYISKP 106 ++++ + + G + + ++ DS L +PV+ T + +E+ + E ++S Sbjct: 1202 VLELGMPDGEGARLLEAMEGDSALASVPVLVHTGHRVDLAQEQTLRTRAEGRPLDFLS-- 1259 Query: 107 ISLSIFMETIKKYI 120 SL E I ++ Sbjct: 1260 -SLDELRERITLHL 1272 >gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293] gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59 +KKV+IVED ++ + GY + +G L+L ++H ++I+DI L + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+++S +P+I +TA + + D + G + Y++KP SI + K+ Sbjct: 61 DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 >gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in phosphate regulation) [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+D + L R +E + + +G +AL +A Q K D II+D+ L ++ G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +TK+I+E + P++ +TA + D+ + G + Y++KP S + I+ Sbjct: 61 IAVTKKIREAKL--KTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIER 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1548 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDNELN ++ L+ +G + +G +A+ + + D+++MD+Q+ + G E Sbjct: 1139 RVLLVEDNELNREVALGLLAEAGLVPDAAEDGAQAVRMVMEGDYDLVLMDVQMPVMDGYE 1198 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I+ E +P++A+TA AM+ D E G +++KPI + +++ Sbjct: 1199 ATRIIRRSREADSLPIVAMTANAMRSDREACLAAGMNDHVAKPIDPDELFAALIRWLPR 1257 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 7/123 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 +V++V+DN + ++E + + G AL+L R+ ++ +D Q+ Sbjct: 992 RVLVVDDNPQARMVLAHMLEGMTFRPVMADGGETALDLLREARDADTPFGMVFLDWQMPG 1051 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE + I+ + ++PV VTA + G A + KP+ S+ +T + Sbjct: 1052 MDGLETARNIRTLA--PDLPVAIVTAHGREEIFAASEGVGVSAVLVKPVQPSLLFDTAMR 1109 Query: 119 YIG 121 +G Sbjct: 1110 LLG 1112 >gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Sorangium cellulosum 'So ce 56'] Length = 1143 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN + ++ + +G EAL AR+ P +++ D+ + + G Sbjct: 648 RVLLADDNADMREYVGRVLRER-WTVEAVADGAEALASARRSPPALVLTDVMMPNLDGFG 706 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ D + +PV+ ++A A + + G + Y+ KP S + + ++ Sbjct: 707 LLRALRADERTRAVPVVMLSARAGEESRVEGLEAGADDYLPKPFSARELVARVATHL 763 >gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 234 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium atrosepticum SCRI1043] gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum SCRI1043] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL++ + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIV-DNTIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VED++ +L + + T Y + +G+E ++ + D+I++D+ + + Sbjct: 8 MKNYHILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNL 67 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E+ K I+ S IP+I +TA + D+ + G + YI+KP S + M ++ Sbjct: 68 NGFEVAKMIRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAV 124 Query: 120 IGEA 123 + + Sbjct: 125 LRRS 128 >gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E + + G++ ++G EA+ L+ + DVII+D+ L +G E Sbjct: 9 RILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIKNGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA + + G + Y+ KP + + + + Sbjct: 69 VCSELRASGN--HTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRR 125 >gi|304407980|ref|ZP_07389630.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304342999|gb|EFM08843.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 880 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 77/119 (64%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDNE+N ++ +++ G NG+EAL L + DV++MD+Q+ + G+E Sbjct: 625 RILLVEDNEINRQVAFEMLSGMGAAVDLASNGVEALRLLEHKRYDVVLMDLQMPVMDGME 684 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++I+E +L +P+IA+TA AMKG +E++ + G AY++KP + E +++ + E Sbjct: 685 ASRRIREREDLNNMPIIAMTADAMKGVKEKVLENGMNAYLTKPFDPASLYELLQRLMPE 743 Score = 57.4 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 V++V D + + R +E + A+E + + D++I+D +LQ+ + Sbjct: 481 HVLLVCDEPEMLMVLRSQLEQFQFHITVAETEDAAIEQLYKGTRYDLVIVDWKLQDADPI 540 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++K+ ++ V+A+ ++RIR Sbjct: 541 QLAERMKQFGSSSLQVIVLVSAYHDLALQQRIRN 574 >gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 224 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 K++I +D KL D ++ GY ++ +G +AL+L + D+II+D+ + G Sbjct: 5 KILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNNDIDLIILDVMMPGYDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S+ +P+I +TA + DE G + YI+KP SL I I+ + Sbjct: 65 TVCREIRKSSQ---VPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRR 121 >gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 232 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL++ + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVL-DNTIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL+ K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|15598388|ref|NP_251882.1| two-component response regulator GltR [Pseudomonas aeruginosa PAO1] gi|107102722|ref|ZP_01366640.1| hypothetical protein PaerPA_01003788 [Pseudomonas aeruginosa PACS2] gi|116051181|ref|YP_789988.1| two-component response regulator GltR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890616|ref|YP_002439480.1| two-component response regulator GltR [Pseudomonas aeruginosa LESB58] gi|254236153|ref|ZP_04929476.1| two-component response regulator GltR [Pseudomonas aeruginosa C3719] gi|254241879|ref|ZP_04935201.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192] gi|296388322|ref|ZP_06877797.1| two-component response regulator GltR [Pseudomonas aeruginosa PAb1] gi|313108507|ref|ZP_07794508.1| two-component response regulator GltR [Pseudomonas aeruginosa 39016] gi|9949311|gb|AAG06580.1|AE004743_3 two-component response regulator GltR [Pseudomonas aeruginosa PAO1] gi|1621045|gb|AAC44475.1| GltR [Pseudomonas aeruginosa PAO1] gi|115586402|gb|ABJ12417.1| two-component response regulator GltR [Pseudomonas aeruginosa UCBPP-PA14] gi|126168084|gb|EAZ53595.1| two-component response regulator GltR [Pseudomonas aeruginosa C3719] gi|126195257|gb|EAZ59320.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192] gi|218770839|emb|CAW26604.1| two-component response regulator GltR [Pseudomonas aeruginosa LESB58] gi|310881010|gb|EFQ39604.1| two-component response regulator GltR [Pseudomonas aeruginosa 39016] Length = 242 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 56/121 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D++ +L + +G+ G + + + + + I+D+ L + G Sbjct: 6 RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ L +P+I +TA + + D + G + Y+ KP S + IK + Sbjct: 66 SLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] Length = 237 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D ++L + +G+ + NG +AL A PD+ ++D+ L +I G Sbjct: 8 AKLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPDIDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ + P++ +TA D+ G + Y++KP SL + I+ + Sbjct: 68 SVTRKLRA--AGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125 >gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++++ED E + ++ G++ +G E LEL + D++++D+ L +S Sbjct: 1 MVTQLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++E S +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 GTDVCRRLRERS---NVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|323483016|ref|ZP_08088410.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum WAL-14163] gi|323691539|ref|ZP_08105808.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum WAL-14673] gi|323403645|gb|EGA95949.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum WAL-14163] gi|323504433|gb|EGB20226.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum WAL-14673] Length = 242 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D++ +++ + ++ + L NG +AL L + D+II+DI +Q + G Sbjct: 17 MKKILIVDDDKRVVRMLEEYMKLYNFQTLCAGNGKDALALYDE-TVDLIILDINMQGMDG 75 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I++ +P+I ++A A D+ G + YI KP + ++ +IG Sbjct: 76 VEVCRRIRKQG---NVPIIMLSANAASFDKVEALGAGADDYIVKPFDPVELLARVRAHIG 132 Query: 122 E 122 Sbjct: 133 R 133 >gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D + + Y +G ALE D+I++D+ L E G Sbjct: 2 RVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEKDGFT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + PV+ +TA + G + Y+ KP S++ + I+ + + Sbjct: 62 VLRELRAEGV--KTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRS 119 >gi|297621214|ref|YP_003709351.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297376515|gb|ADI38345.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 129 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K ++++VED+ +N+++ ++++ G I NG EAL+ ++ D I MD+Q+ Sbjct: 1 MTKQEYRILVVEDHFINLEMISEMLKRLGCIVDTASNGKEALDCVTKNFYDAIFMDLQMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G E T+ I+ED Q+IP+IA+TA +K D +R + G + Y++KP L +K Sbjct: 61 VMDGYETTRLIREDKTRQKIPIIALTANHVKSDLDRCLESGMDGYLTKPFELKDLNNVLK 120 Query: 118 KYI 120 KY+ Sbjct: 121 KYL 123 >gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59 +KKV+IVED ++ + GY + +G L+L ++H ++I+DI L + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+++S +P+I +TA + + D + G + Y++KP SI + K+ Sbjct: 61 DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 >gi|229495757|ref|ZP_04389485.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas endodontalis ATCC 35406] gi|229317331|gb|EEN83236.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas endodontalis ATCC 35406] Length = 969 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + Y NG+E LE A++ PD+II D+ + E+ GLE Sbjct: 711 HLLIVEDNRDIAAYIGSQLANH-YAISYAANGLEGLEKAQELVPDLIITDLMMPEMDGLE 769 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q++++ + IP+I VTA + + + + G +AY++KP + ++K + Sbjct: 770 LCRQVRKNEIISHIPIIVVTAKISEEERIKGIEAGADAYLAKPFNSDELRTRVEKLL 826 >gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] Length = 227 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 73/122 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++++D ++L + +E +GYI + + E A++ KP++I++D L IS Sbjct: 1 MEEKILVIDDEMHIVELLKFNLEVNGYIVDYSLDSFEGYHKAKELKPNLILLDWMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K+I+ED +L++ PVI +TA M+ D+ + + G + YI+KP + + I + Sbjct: 61 GIDVLKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] Length = 226 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + G+ ++ +G EA+++ Q ++++D+ + ++ G Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I++ ++PVI +TA + + DE + G + YISKP S I + ++ + Sbjct: 65 EVLRTIRK---YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121 >gi|119900234|ref|YP_935447.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] gi|119672647|emb|CAL96561.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] Length = 1064 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN N K+ R ++E G+ +G EAL Q D+++MD ++ E+ G Sbjct: 803 RILLAEDNATNQKIARTMLERQGHRVHVAGDGAEALAALVQGDYDLVLMDCRMPEVDGFA 862 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ + IP++A+TA AM+GD ER+ G + Y++KPI + T++ ++ Sbjct: 863 ATRAIRDGLGGARHAAIPIVAMTADAMEGDRERVLAAGMDDYLTKPIDAARLEATVRHWL 922 Query: 121 G 121 G Sbjct: 923 G 923 Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 +++++V+DN + + L+ G L+ +G AL L + D I+D+++ Sbjct: 657 RRLLVVDDNASSREQLGLLLGAWGCELLEAADGDAALALLAREAETGGTIDGAILDLRMP 716 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G + ++IK D L +P++ +T AM+ D ER+R GG AY++KP+ + ++ Sbjct: 717 GMDGEALGRRIKADPALAHLPLLLLTPVAMRPDAERLRAGGFAAYLAKPVRADLLERALR 776 Query: 118 KYIGE 122 + + Sbjct: 777 TLLRQ 781 >gi|300866045|ref|ZP_07110777.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] gi|300335960|emb|CBN55935.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506] Length = 352 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DNE+N L ++ G+ +G+ ALE+ R H D++++DI + +++G ++ Sbjct: 8 VLVVDDNEVNRDLLARRLQRQGHKVQVAEDGILALEMMRSHPFDLVLLDIMMPQMNGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D +L+ IPVI ++A R + G E Y+SKP + + I + Sbjct: 68 LEHLKADDKLRYIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPVLLKARISACL 123 >gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1] gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 234 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + + GY + N E L++ + ++++DI + + GLE+ Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E IP+I ++A + D+ G + Y+ KP + +K + Sbjct: 66 CRKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|171909724|ref|ZP_02925194.1| sensory box histidine kinase/response regulator [Verrucomicrobium spinosum DSM 4136] Length = 835 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ +DN +N ++ ++ +E G +G EAL+LAR+ +VI++D Q+ + G Sbjct: 575 SARILVADDNPVNQRVLKNQLEYLGMQVTPCSDGAEALKLAREGGHEVILLDCQMPVMDG 634 Query: 62 LEITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E T++I+E L + +P+IAVTA M GD E + G + Y+ KP+ + + + Sbjct: 635 FEATRKIREWESLTGAKRVPIIAVTAHVMAGDAELCLEAGMDGYLPKPVEVDRLQQALLA 694 Query: 119 YI 120 ++ Sbjct: 695 WL 696 >gi|186476911|ref|YP_001858381.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184193370|gb|ACC71335.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 241 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDASSLERRIERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 224 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED + +L + + GY L+ +G EALE+ ++ ++I+DI L + Sbjct: 1 MSESILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNSISLVILDIMLPLLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + I+E SE +P+I +TA + + D+ + G + Y++KP S + +K + Sbjct: 61 GWTVCTNIREKSE---VPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|323700307|ref|ZP_08112219.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio sp. ND132] gi|323460239|gb|EGB16104.1| response regulator receiver sensor signal transduction histidine kinase [Desulfovibrio desulfuricans ND132] Length = 400 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M ++ V++V+DN LN+ L D+++ Y L NG+ ALE+ R PD+I++DI + E Sbjct: 1 MSERATVLVVDDNRLNIDLLVDVLKDD-YKLLVALNGVSALEVIRHTLPDIILLDIMMPE 59 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E+ +++K D +PVI +TA + DE + G YI+KP++ +I I+ Sbjct: 60 MDGYEVCRRLKSDERTSPVPVIFITAKSQTEDEAKGLALGAVDYITKPVNPAIVQARIRT 119 Query: 119 YI 120 ++ Sbjct: 120 HL 121 >gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 236 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++MIVED+E + ++ +E GY +G E LE + ++ ++++DI L E+ Sbjct: 1 MGERLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+ +E +IPV+ ++A + D+ + K G + YI+KP SL I+ ++ Sbjct: 61 GFTLCKNIRWINE--DIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 334 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED L R + GY R+G+ L+ R +P ++++D+ L I GLE+ Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGLPGIDGLEV 171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + PV+ VTA + D + G + Y++KP S + + + + Sbjct: 172 CRRLRAADDW--TPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRRS 228 >gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D ++ +K + + +G EALE R +K D+I++DI L ++ Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +QI+E +P+I +TA D+ G + YI+KP ++ +K + Sbjct: 70 GLSVCQQIRE---FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAIL 126 Query: 121 GE 122 Sbjct: 127 RR 128 >gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1201 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V++ +D+ N+ +E + +G EAL+ ++ DV+++D+ + ++ G Sbjct: 1079 KTVLVADDDVRNIFSLSKALEQFNMTVIAALDGKEALQKLDENPGIDVVLLDMMMPQMDG 1138 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+E + + +PVIAVTA AM GD E+ + G YI+KP+ + + ++ ++ Sbjct: 1139 YETARKIREHYQWKNLPVIAVTAKAMTGDREKCIQAGASDYITKPVDIDQLISLLRVWL 1197 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVED+ K D GY + G E L+LA + P I++DIQL +SG Sbjct: 810 KTILIVEDDPNFAKSLLDYARKKGYKGIVAVQGDEGLKLASVYNPLGILLDIQLPVMSGW 869 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME---TIKKY 119 E+ +K + + + IPV +++ + + G ++ KP++ E I+ Sbjct: 870 EVMDALKANPKTRPIPVHIMSSHKL---KNESLLKGAIDFVDKPVAFEQLQEVFKKIEYV 926 Query: 120 IGE 122 + Sbjct: 927 LNR 929 Score = 73.6 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 51/103 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IVEDN + K +ET + N E ++ ++ + D +I+D+ + + Sbjct: 932 KKVLIVEDNPKHAKALAYFLETFNITSELKSNITEGIDALKRKEVDCVILDMGVPDSKAY 991 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E + K+D L+ +P+I T ++ EE K ++ I K Sbjct: 992 ETLEVAKKDPGLENLPIIIFTGKSLSMSEELKIKKYADSIIVK 1034 >gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella flavida DSM 17836] Length = 1400 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 56/116 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+I +DN + L+ +G+ +G AL+ AR PD+II D+ + + GL Sbjct: 647 ARVLIADDNADMREYLARLLRGAGHRVSAVTDGYAALDRARAETPDLIISDVMMPGLDGL 706 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++ D IPV+ ++A A + + G + Y+ KP S + + ++ Sbjct: 707 RLVADLRADGRTAGIPVLLLSARAGQEASIEGLEAGADDYLVKPFSAAELLARVQT 762 >gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1186 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 10/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ ED+ N + ++E G+I L +NG EALE ++H D I+MDI + + G+E Sbjct: 1056 RVLLAEDDPSNRFFMQKVLEREGHIPLIAQNGQEALEQFQKHAFDCILMDINMPVMDGME 1115 Query: 64 ITKQIK----------EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 TK+I+ ED IP+IA+TA AM GD ER + G Y+SKP+ + Sbjct: 1116 ATKEIRRLEAGGSRQEEDGTYPAIPIIALTAHAMGGDRERFLEMGMNDYLSKPVQVQELR 1175 Query: 114 ETIKKY 119 + K Sbjct: 1176 TALDKI 1181 >gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VED++ +L + + T Y + +G+E + + D+I++D+ + + Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E++K I+ S +P+I +TA + D+ + G + YI+KP S + + ++ Sbjct: 61 NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 225 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 KV++V+D E KL D ++ + L+ +G EA++L + ++I+D+ + ++ G Sbjct: 5 KVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEKDISLLILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+E S +PVI +TA + + DE R + G + YISKP S I + ++ + Sbjct: 65 AVLKSIREHSR---VPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|257486369|ref|ZP_05640410.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987453|gb|EGH85556.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010647|gb|EGH90703.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 645 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y++KP + + + +++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQLLHRWL 634 >gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CNPAF512] Length = 227 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V +VED E L R +E G+ G EA ++ PD++I+D L +S Sbjct: 1 MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + + R G + Y+ KP S + +K + Sbjct: 61 GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|28869899|ref|NP_792518.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853144|gb|AAO56213.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 1170 Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 77.5 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED++L LI +AL+L R H D +I+D++L ++ G Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|224370278|ref|YP_002604442.1| two-component response regulator [Desulfobacterium autotrophicum HRM2] gi|223692995|gb|ACN16278.1| two-component response regulator [Desulfobacterium autotrophicum HRM2] Length = 244 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED + + + + GY +G+ LEL RQ PD+II+DI L I GL Sbjct: 7 KRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELWRQWHPDLIILDIMLPMIDGL 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ + E ++PV+ ++A D R + G + Y++KP L F+ + + + Sbjct: 67 TVLKKIRSEDE--KLPVLILSAKGNAEDRVRGLRCGVDDYLAKPFDLDEFLLRVDRLLAR 124 >gi|182412781|ref|YP_001817847.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177839995|gb|ACB74247.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 372 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D E N+++ D++ GY + +G +AL D+I++D+ + + G Sbjct: 11 ARILVVDDQETNLRVLGDMLAHLGYDIVPALDGEQALRRLSSRPVDLILLDVLMPGLDGF 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I+ + +IP+I ++A K R + G YI+KP + + + ++ ++ Sbjct: 71 EVCRRIRSNVAWIDIPIIFLSAADDKSLIVRALESGGVDYITKPFNAAELLSRVRTHL 128 >gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + R +ET+GY L+ A +PD++++D L SG+E Sbjct: 5 KVLIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWMLPGGSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++IK Q++PVI +TA A + + + G + YI+KP +L + IK + A Sbjct: 65 LLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRRA 124 >gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I +DN + + + + +G EA+ + RQ+ P V+++D+ + + G Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ S ++PVI +TA ++ G + YI KP S S M I+ + Sbjct: 61 YEVCRKIRAKS---DVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 57/128 (44%), Gaps = 8/128 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQ 55 + +++IV+D++ + + G+ +G +A++ + D++++D+ Sbjct: 1 MPRLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLM 60 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 L + GL++ + ++ P++ V+A + D + G + Y+ KP L + Sbjct: 61 LPGVGGLDVCRHLRRSD--PHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVAR 118 Query: 116 IKKYIGEA 123 + + + Sbjct: 119 CRALLRRS 126 >gi|319795506|ref|YP_004157146.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597969|gb|ADU39035.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + +D + SGY +G ALE PD+ ++DI L + G Sbjct: 1 MTRIVVVEDEIDIASVVQDYLRHSGYETAHFADGQSALESIVAAPPDLTLLDIMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++ +E + P+I +TA + D + G + Y+ KP S + ++ + Sbjct: 61 IEVLRRAREHTAH---PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] Length = 226 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + +D + Y G +A+E+ + KP ++I+D+ L ++G Sbjct: 1 MSRILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI + I+ IP++ ++A + D+ + G + YI+KP + + + Sbjct: 61 YEICQNIR---IKSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|119487283|ref|ZP_01621034.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] gi|119455838|gb|EAW36973.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106] Length = 519 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 63/115 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D N++L +D++ GY +G AL + +PD+I++DI + ++ G Sbjct: 14 AKILVVDDLPENLRLLQDILVQQGYDVRFANSGKLALLSLSRFQPDLILLDIMMPDLDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + +Q+K + E + IPVI ++A ++ + + G YI+KP + I+ Sbjct: 74 TVCQQLKANRETENIPVIFMSALDDGSNKVKGFQVGGNDYITKPFITEEVLARIR 128 >gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1020 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + L+ + +G AL++A PD+++ D+ + + G Sbjct: 634 RILLADDNADMREYVARLLSPR-WTVEAVADGAAALDVALARPPDLVLTDVMMPRLDGFG 692 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ + + IPVI ++A A + + G + Y+ KP S + + + Sbjct: 693 LLRALRSQASTRAIPVIMLSARAGEEARVEGMEAGADDYLVKPFSARELLARVSARL 749 >gi|30018772|ref|NP_830403.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218232832|ref|YP_002365383.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218895640|ref|YP_002444051.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228899271|ref|ZP_04063534.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228906332|ref|ZP_04070217.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228957004|ref|ZP_04118779.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228963678|ref|ZP_04124822.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|229042443|ref|ZP_04190189.1| Two-component response regulator [Bacillus cereus AH676] gi|229108192|ref|ZP_04237814.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126017|ref|ZP_04255040.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229143310|ref|ZP_04271741.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296501346|ref|YP_003663046.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29894313|gb|AAP07604.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218160789|gb|ACK60781.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218544181|gb|ACK96575.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228640117|gb|EEK96516.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228657442|gb|EEL13257.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228675208|gb|EEL30430.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228726897|gb|EEL78108.1| Two-component response regulator [Bacillus cereus AH676] gi|228796026|gb|EEM43490.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228802635|gb|EEM49477.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228853355|gb|EEM98127.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228860302|gb|EEN04699.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|296322398|gb|ADH05326.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q + D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPSMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|82617296|emb|CAI64201.1| probable response regulator (CheY-like receiver domain and DNA-binding HTH domain) [uncultured archaeon] Length = 170 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + +E Y + +G EAL PD+I++D+ L +++G E Sbjct: 49 KILVVDDEPDTLLPLTRALEADNYAVVGAVDGAEALIKVSNETPDLILLDLMLPKLNGYE 108 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++KE+ + IPVI ++A D+ + G + Y++KP L I+ + Sbjct: 109 VCMKLKENPATRHIPVIMLSAKGEIKDKVLGIEIGADDYVTKPFDLLELKARIRALLRR 167 >gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates and phosphorylates sensor PhoR [Acinetobacter sp. ADP1] gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter sp. ADP1] Length = 236 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D L +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|330959044|gb|EGH59304.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 652 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 526 RKILLVEDNPVNRTVVQAMLHQMGCEVDVAVDGAEAVLKAGTGYYALILMDCRLPVMDGY 585 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L IP+IA+TA A++GD + + G + Y++KP + + + +++ Sbjct: 586 EATRRIRQLSGLDRIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQKVLLRWL 643 >gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+E + + G+ +G E L PDV+++D L + G Sbjct: 1 MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ E +P++ VTA D + G + Y+ KP+ + I+ + Sbjct: 61 LEVCRRLR-TPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + + GY +G +AL+L R +PD +I+D+ + + GL+ Sbjct: 2 HILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLGGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + PV+ +TA A D G + Y++KP +L + ++ + Sbjct: 62 ACRALRASGDT--TPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRR 118 >gi|213967062|ref|ZP_03395212.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301385247|ref|ZP_07233665.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302063302|ref|ZP_07254843.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302130188|ref|ZP_07256178.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928384|gb|EEB61929.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 1170 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEMRFAQILFDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 77.5 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED++L LI +AL+L R H D +I+D++L ++ G Sbjct: 900 KRILLVEDDDLQRDSIARLIGDDDIEITAVGFAQQALDLLRDHIYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D+ +L R ++ G+ L+ ++G EA L Q D+ I+D+ + G E+ Sbjct: 3 ILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVMMPNKDGYEL 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +IPVI +TA D+E+ + G + Y+ KP + IK + Sbjct: 63 CREIR---RYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRR 117 >gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905] gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905] Length = 247 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED + + ++ GY G E L LA DV+++D+ L I+G+ Sbjct: 25 KKILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLPGINGI 84 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++++ S+ +P+I +TA D G + YI KP ++ + I+ + Sbjct: 85 EICRRVRTQSQ---VPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 141 Query: 123 A 123 A Sbjct: 142 A 142 >gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 245 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 54/116 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E A+Q PDV+I D+ + + G Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFDVTTAVDGEEGFTKAQQMLPDVVISDVMMPRLDGYG 79 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + K++++D L PVI +TA M D + G + YI KP + ++ Sbjct: 80 LLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNV 135 >gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + +GY L+ ++G EA++ K +++++D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTKGINLLVLDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I++ + ++P+I +TA + DE + G + YISKP S I + ++ + Sbjct: 65 EVVKEIRK---VSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 >gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED +L ++++G+ + +G +A ++ +PDV+++D L ++SGL + Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E E++ +PVI +TA ++ D+ G + YI+KP S + I + Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125 >gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] Length = 230 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM 15053] gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM 15053] Length = 224 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +D + ++L +D E GY L+ NG E LE + KPD+I++D+ + I Sbjct: 1 MEYKILIADDEQGIIQLLKDYFEIQGYRVLEALNGAEVLEKLAR-KPDIILLDVSMPGID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ P++ +TA + D K G + YI KP S+ ++ ++ Sbjct: 60 GFEVCRRIRSHI---SCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine gamma proteobacterium HTCC2148] gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine gamma proteobacterium HTCC2148] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 65/120 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED + + R +E + Y ++ N +A L +PD++++D L SGLE Sbjct: 5 TVLVVEDEKAIRDMLRMALEVAKYRFIEAENIRDAHVLIVDERPDIVLLDWMLPGGSGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K + +EIPVI +TA A + + + + G + Y++KP + + I+ + + Sbjct: 65 LLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRRS 124 >gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V +VED E L R +E G+ G EA ++ PD++I+D L +S Sbjct: 1 MIPRVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + + R G + Y+ KP S + +K + Sbjct: 61 GIELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + L+ GYI +G E A+ D++I+D L +GLE Sbjct: 2 RILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSYDLLILDWMLPGKTGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I +Q++ + PV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 62 ICQQLRRQGKT--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 119 >gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED +L RD +E + + +G + LE A D++I+DI L ++SG Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ KQI+ ++IP+I V+A + D+ R G + YI+KP S + +K ++ Sbjct: 61 FEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228919441|ref|ZP_04082806.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840228|gb|EEM85504.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 223 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL L Q + D+I++D+ + + G Sbjct: 1 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPSMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 61 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] Length = 231 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 70/124 (56%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+++ ++I++D++ ++L + GY + +G EAL + H+ D++I+DI + + Sbjct: 1 MMERNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIMMPKR 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GLE+ +Q++E++ +P++ ++A A D+ G + Y+ KP + + +K Sbjct: 61 NGLEVCQQVREEN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 225 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + + + SG++ NG + L +A + DVII+D+ L + G Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+ SE PV+ +TA D R + G + Y+ KP + + + I++ + ++ Sbjct: 62 VIKSIRSKSET---PVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118 >gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 236 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEI 59 M ++IVED ++ G+ A G E + +A + PD++++D+ L + Sbjct: 1 MSVNILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ ++++E+ + +PVI +TA + D+ + G + Y+ KP + + I+ Sbjct: 61 SGIEVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAI 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22] gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22] Length = 239 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ ++ ++ +GY + +G AL A H+PD++++D+ L + GLE+ Sbjct: 2 LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLMLPGMDGLEVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ +PVI +TA + D + G + Y++KP S + ++ + A Sbjct: 62 RRLRARGP---VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRA 116 >gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 239 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + KV++V+D+ L + G++ NG +A L + ++++D+ L Sbjct: 1 MSQQYKVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL I ++++E +IPV+ +TA + D + G + Y+ KP + + I+ Sbjct: 61 EDGLSICRRLRE--AGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRA 118 Query: 119 YIGE 122 + Sbjct: 119 VLRR 122 >gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] Length = 226 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + G +G+E E ++ D++I+D L + G+ Sbjct: 2 RILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWMLPGMDGIA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E E +P+I +TA + D+ + G + Y++KP S M IK Sbjct: 62 LCRKIRE--EGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRR 118 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+EL + + Y +G A +L ++ D+I++DI L ++ G+ Sbjct: 2 KILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ S + +P++ +T D+ G + Y+ KP + ++ + Sbjct: 62 LCKKIR--SSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++V+D+ ++L + L+ G + + + E + +PD++I+DI++ + Sbjct: 371 MNKTKILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTM 430 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+E+ K I+ + +E+P++ +T + ++ G + ++SKPI +S I Sbjct: 431 SGIELCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNR 490 Query: 120 IGE 122 + Sbjct: 491 LER 493 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 10/124 (8%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ +D+ + + +L+ GY L +G +A+ A PDVI++D+ + ++G E Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123 Query: 65 TKQIKEDSELQEIPVIAVT--------AFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +K+ S+ ++IP++ + + + K ++SKP+ + ++ Sbjct: 1124 MAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVK--FADWLSKPVEETDLFNSL 1181 Query: 117 KKYI 120 +K + Sbjct: 1182 RKVV 1185 Score = 69.4 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I+ED+ L L + G EA+ L+++ PD++I+D+ L E G Sbjct: 1193 KILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1252 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122 + +K+ +L +PV+ +A + E K G + +K ++ F + + + Sbjct: 1253 VVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTTQEFEQRVMDLLQR 1312 >gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 870 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++I ED+ ++ ++ Y +G +A++ +Q D+IIMD+Q+ + G Sbjct: 750 RRLLIAEDDPTIRQVLGTMLARFEYQVEYAEDGHQAVQRWQQSPYDMIIMDVQMPGLDGF 809 Query: 63 EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+ E +P++A+TA AMK DE+R G + YISKPI + I + Sbjct: 810 EATRAIRQKELERGGRLPILAMTAHAMKEDEQRCIAAGMDDYISKPIDFRECLGKIGALL 869 Query: 121 G 121 G Sbjct: 870 G 870 >gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873] gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D++ + + ++ G + ++G++AL + ++ + +I+MDI + ++ G++ Sbjct: 6 VLVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKA 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E ++IP+I ++A + D+ G + Y++KP + + +K + Sbjct: 66 TFKIREK---KDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRR 120 >gi|298492712|ref|YP_003722889.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298234630|gb|ADI65766.1| response regulator receiver sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 437 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 60/116 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N+K+ + I+ G+ AL +G A+ PD+I++D+ + + G E Sbjct: 12 VLLVDDNPNNLKVLSEAIQRCGWKALMATDGESAIRQTEYAHPDLILLDVMMPGLDGFET 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + PVI +TA D+ + + G YI+KP + +K ++ Sbjct: 72 CRRLKANPLTYNTPVIFMTALCDPTDKVKGLEIGAVDYITKPFQHEEVIARLKLHL 127 >gi|28868489|ref|NP_791108.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968377|ref|ZP_03396521.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato T1] gi|301384643|ref|ZP_07233061.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058904|ref|ZP_07250445.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato K40] gi|302133017|ref|ZP_07259007.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851727|gb|AAO54803.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213927015|gb|EEB60566.1| sensory box protein/response regulator [Pseudomonas syringae pv. tomato T1] gi|331015226|gb|EGH95282.1| sensory box protein/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 705 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D+ L L++ GY L +G +AL + PD+I++DI + + G Sbjct: 6 ATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDARAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +K IP+I ++A +G + G E Y+SKP+ + ++ + Sbjct: 66 EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLR 124 >gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ ++ G +G AL R+ +PDV+++D+ L I GLE Sbjct: 6 RVLVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVMLPGIDGLE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ +S +P++ +TA D + G + Y+ KP + ++ + Sbjct: 66 VCRRIRAESG---VPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRR 121 >gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1347 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN + + + Y L+ +NG +ALE+ ++ + ++I+ D+ + + GL++ Sbjct: 1101 ILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDGLQL 1159 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 KQIK++ IPVI ++A A ++ G + YI KP SL++ I+ Sbjct: 1160 CKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFR 1216 >gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1034 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 72/119 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ EDNE+ + + D + + + RNG EA+E A++++P +I++DIQ+ + GL Sbjct: 900 ATILLAEDNEMTIDVVSDYLHYLNFEVVVARNGYEAIERAQEYRPALILIDIQMPVMDGL 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++++ + P+IA+TA AM+GD ER G Y+SKPISL +E I++ + Sbjct: 960 HAIRELRALPAFRTTPIIALTALAMQGDRERCLAAGANEYLSKPISLHGLVEVIQQILR 1018 >gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 241 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E Y+ + +G EALE A + DVI++D+ L G+E Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + K+I+E + P++ +TA + + + + G + YI KP S + +K Sbjct: 69 VCKEIREQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119 >gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697] gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697] Length = 1347 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN + + + Y L+ +NG +ALE+ ++ + ++I+ D+ + + GL++ Sbjct: 1101 ILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDGLQL 1159 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 KQIK++ IPVI ++A A ++ G + YI KP SL++ I+ Sbjct: 1160 CKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFR 1216 >gi|161520008|ref|YP_001583435.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353810|ref|YP_001949437.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160344058|gb|ABX17143.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189337832|dbj|BAG46901.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 246 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E + PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRSVLDDGAPDLIVLDLMLPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905] gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++ ++D + L +E G+ + +AL + D++++DI + E+ G Sbjct: 1 MKTILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHVDLVLLDIMMPEMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I++ +P+I +TA D + G + YI KP + I + Sbjct: 60 FQVCEEIRK---FWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Frankia alni ACN14a] gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Frankia alni ACN14a] Length = 240 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + L R + G+ L G AL+LA Q +PD++I+D+ L ++ G E Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDVDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ Q +PV+ +TA D+ G + Y++KP ++ + ++ + Sbjct: 66 VCRTLRA--GGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRR 122 >gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 222 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED++ KL + + G+ ++ +G+ A+E + + D+I++D+ L +++G Sbjct: 1 MNKILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +I+E + ++ +I +TA + + D+ + G + YI+KP S + + IK + Sbjct: 61 ITVCSKIRE---ISDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218440571|ref|YP_002378900.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7424] gi|218173299|gb|ACK72032.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7424] Length = 380 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ KL + S + + NG E +E A + +PD+II D + + G Sbjct: 1 MAQILIIDDDSAIQKLLSRALTRSHHEVILASNGTEGIEKAIKLRPDLIICDWLMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ +Q+K EL I +TA D G + ++ KPI ++ ++ + Sbjct: 61 IQVCRQVKMIPELSTTFFILLTALGSVEDRIIGLDAGADDFLCKPIEINELQARVRSGLR 120 >gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118] gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D+ L R + G+ LQ +G L + D+I++D+ + GL Sbjct: 10 KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + I + Sbjct: 70 ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 >gi|71908559|ref|YP_286146.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71848180|gb|AAZ47676.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 777 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +N ++ + L+E + NG EAL LA + D+I+MD+Q+ + GLE Sbjct: 643 RVLLVDDEPINREITQILLEDLHFRIDSAENGEEALALACIYPYDLILMDMQMPVMDGLE 702 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + +IA+TA A D ER G + + +KPI F I + + Sbjct: 703 ATRRIRALPDGHRFLIIAMTANAFSEDRERCLAAGMDDFTTKPIDPEAFFSLIHRQL 759 >gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 245 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ ED ++ G+ +G + ++ D++I+DI + +I+G Sbjct: 22 MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKING 81 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++ Q PVI +TA D + G + Y+ KP S IK + Sbjct: 82 LELCHLYRQMFGYQA-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 140 Query: 122 E 122 Sbjct: 141 R 141 >gi|39936196|ref|NP_948472.1| CheY-like response regulator receiver [Rhodopseudomonas palustris CGA009] gi|192291912|ref|YP_001992517.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] gi|316933636|ref|YP_004108618.1| response regulator receiver protein [Rhodopseudomonas palustris DX-1] gi|39650051|emb|CAE28574.1| response regulator receiver (CheY-like protein) [Rhodopseudomonas palustris CGA009] gi|192285661|gb|ACF02042.1| response regulator receiver protein [Rhodopseudomonas palustris TIE-1] gi|315601350|gb|ADU43885.1| response regulator receiver protein [Rhodopseudomonas palustris DX-1] Length = 121 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 81/121 (66%), Positives = 104/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EAL+L R+ +PD+I+MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGYEALDLVRKLRPDLILMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ IK+D+EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLEVTRWIKDDAELRHIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1261 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDNE+N ++ +L+ G+ NG+ ALE + +++MD+Q+ E+ G+ Sbjct: 925 ARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQMPEMDGI 984 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T I+++ ++P++A+TA M+GD ER + G ++ KPI + +I Sbjct: 985 EATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKLLHWI 1042 Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA----RQHKPD-VIIMDIQLQ 57 K+V++V+DN+ + +DL+E ++ +G EAL R++ P ++ +D Q+ Sbjct: 771 KRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPEALNFLAEADRENHPHSIVFIDWQMP 830 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + GLE+ +++K + + VTA+ + + + G + + KPIS S+ +++ Sbjct: 831 NMDGLEVARRLKAMGLNHQPSIFIVTAYGREELFVKAKSLGIDDVLVKPISPSVLFDSLA 890 Query: 118 KYIGE 122 + +G+ Sbjct: 891 RVLGD 895 >gi|330969228|gb|EGH69294.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 705 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G AL + ++ PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K + IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2483 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++E G + NG A+E+ +++ DV++MDI + E+ G Sbjct: 2363 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2422 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E + I+++ + ++P+IA+TA A+K D E+ G Y+ KP+ +E I+ Sbjct: 2423 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2478 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 8/123 (6%) Query: 4 KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ I+ED+ ++ + G+ L G L +A ++ P I +DIQL + G Sbjct: 2093 RILLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMANEYLPHAITLDIQLPVVDGW 2152 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKY 119 + +++K + + IPV ++ D+ G Y++KP+S L + + Sbjct: 2153 SVLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHF 2208 Query: 120 IGE 122 + Sbjct: 2209 LER 2211 Score = 81.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ++++++ED+++ L+ E S G EAL + + D +++D+ L ++ Sbjct: 2213 SRRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLEEGEYDCLVIDLLLPDMD 2272 Query: 61 GLEITKQIKEDSELQEIPVIA-----VTAFAM 87 G ++ +++K +++P++ +TA Sbjct: 2273 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2304 >gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes] gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes] gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes] gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes] gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes] gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes] gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 235 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D L + +E +G++ +GM L+LA + +I++D+ L E+ Sbjct: 1 MKDKIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K++++ P++ +TA + D+ + G + Y++KP S + +K + Sbjct: 61 GLEVCKRLRQQKI--NTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E K + + GY + +G+ L AR +PD++++D + ++G+E Sbjct: 7 RILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMPGLTGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +PVI +TA D G + Y+ KP S+ + ++ ++ Sbjct: 67 VCRRLRATGAM--MPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRR 123 >gi|119488955|ref|ZP_01621890.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119454911|gb|EAW36054.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 262 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY Q +G++ LA Q PD+II+D+ L ++ G Sbjct: 1 MPRILVIDDDPAIAELVAINLEMAGYEVSQAEDGIKGQALALQLLPDLIILDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IP++ +TA ++ G + Y++KP L + ++ + Sbjct: 61 FTVCQRLRRDERTSDIPIVMLTALGQTQNKVEGFNSGADDYLTKPFELEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IVED+ +L RD +E + Y +G L+ A Q +I++D+ L + G Sbjct: 1 MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + ++ ++ +P+I V+A D+ R G YI KP + S + +K I Sbjct: 61 FQVCRNLRA---VKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116 >gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++IV+D+ ++L ++ G+ + NG+EAL++ + + I+DI + + Sbjct: 1 MKQHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIMMPAM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++I+E IPV+ ++A + D+ G + YI+KP S+ + +K Sbjct: 61 DGIEVCRRIREQ---YNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|222082591|ref|YP_002541956.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727270|gb|ACM30359.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 240 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +++ V++V+D++ L + +G G E + R D++++DI + Sbjct: 1 MQRTPHVLVVDDHKEIRDLLAKYLAKNGLRVSTANGGAEMRQQLRTATIDLVVLDIMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL + + +++ +P++ +TA + + D + G + Y++KP + + I+ Sbjct: 61 EDGLSLCRSLRQ---TSMVPIVLLTAVSDETDRIIGLELGADDYVTKPFNPRELLARIRA 117 Query: 119 YIGEA 123 + A Sbjct: 118 LLRRA 122 >gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 653 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 74/118 (62%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ N L L+ T G++ +NG EALE+ ++ P +I MDI++ + GLE Sbjct: 446 RILVVEDHADNRCLLVTLLATIGFLVKSAQNGQEALEICQEWHPHLIWMDIKMPLMDGLE 505 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ ++ + +IA+TA A D+ER GC+ ++ KP + +I +E + +++G Sbjct: 506 ATQRIRAMPQIPQPVIIALTANAFDEDKERALTCGCDDFLHKPCNETIILEKMTQHLG 563 >gi|330880822|gb|EGH14971.1| response regulator receiver:ATP-binding region [Pseudomonas syringae pv. glycinea str. race 4] Length = 636 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCKVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y++KP + + + +++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLAKPFKHADLQQVLHRWL 634 >gi|320328955|gb|EFW84954.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 1170 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 94.0 bits (234), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 79.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 217 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED E K+ + +E G+ + +G EA+E + V+I+D+ L + G Sbjct: 2 KILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + PVI +TA D+ + G + Y+ KP+S + +K + Sbjct: 62 VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117 >gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] Length = 226 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ +++ D + GY+ + N EA + + PD++I+D+ + Sbjct: 1 MSQKILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKVN-PDLMILDVMMPGQD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I+ + P+I +TA + D + G + Y++KP SL + ++ Sbjct: 60 GFEFCKEIRS---VVSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum DSM 5476] gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum DSM 5476] Length = 237 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D E + R E GY+ + +GMEA++L R D++I+D+ + E+ G Sbjct: 17 QHILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLCRDRDFDILILDVMMPELDGF 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ + PV+ ++A + D+ + G + Y+ KP S M +K + Sbjct: 77 STCREIRK---FKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILNR 133 Query: 123 A 123 + Sbjct: 134 S 134 >gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1382 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 71/118 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++VEDNE+N L +L+ G + NG + + R D+++MDIQ+ + GL Sbjct: 946 RKVLLVEDNEINRDLAIELLSDLGLLVSIAENGQDGVARVRADPFDLVLMDIQMPVMDGL 1005 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ D +++P+IA+TA AM GD ER + G +I+KPI+ +T+ +++ Sbjct: 1006 TATKLIRADERFRDLPIIAMTAHAMSGDRERSLEAGMNDHITKPINPGHLTDTLIRWM 1063 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++++D N+ L D+ ++ Y L GM LE+A PD+I++D+ + I G E Sbjct: 1225 RILVIDDEPSNIDLLADIFSST-YEVLAAEEGMGGLEIAATSMPDLILLDVMMPGIDGYE 1283 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + IPVI +T E + G +++KPI + + +I Sbjct: 1284 VCRRLKAEPLTSAIPVIFITGLGDDASETHGLELGAVDFVTKPICPATVRARVSNHI 1340 Score = 113 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 73/128 (57%), Gaps = 6/128 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQL 56 K+V+IV+D++ + ++ +G A+ T++G EA+ + + D+++MD ++ Sbjct: 797 SKRVLIVDDSDSARDVLLAMLCANGINAIATKSGEEAMAVLAEASQAGTPFDLVLMDWRM 856 Query: 57 QEISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + G+E + +IK D+ L +IP ++ V+AF + E G + ++ KP++ S+ ++T Sbjct: 857 PGMDGIEASHRIKADATLSQIPSILMVSAFGREEMAEGSLGGDLDGFLIKPVNESVLIDT 916 Query: 116 IKKYIGEA 123 I + G A Sbjct: 917 ISEMFGGA 924 >gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 238 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG AL+ AR+ +PD II+D+ + + G Sbjct: 12 ARVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 72 GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 129 Query: 123 A 123 + Sbjct: 130 S 130 >gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 226 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 7/124 (5%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K K++IV+D + + + + +E GY N EAL+ + PD+I++DI + Sbjct: 1 MKENYKILIVDDEQSILDMLKLQLEFEGYTVFIACNAKEALDKL-SYSPDIILLDINMAG 59 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++GL++ I+ + P+I +TA + D+ G + YI+KP S++ + I Sbjct: 60 MNGLDLCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISA 116 Query: 119 YIGE 122 ++ Sbjct: 117 HLRR 120 >gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ A G ALE ++ D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ+++ S +PVI VTA + D+ + G + Y++KP S + ++ + Sbjct: 61 TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307153190|ref|YP_003888574.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] gi|306983418|gb|ADN15299.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822] Length = 589 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 62/116 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED +L +L+ + + ++ +G + +E A PD+I+ DI + +G Sbjct: 1 MSKILVIEDELSIRELINELLTLADFEVVEAEDGQQGIEQALSTLPDLILCDIMMPYKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ ++++ E + IP I +TA K D + G + Y++KP + ++TI Sbjct: 61 YEVLQELQCHPETESIPFIFLTAKGTKFDIRQGMNLGADDYLTKPFTEDELLQTIN 116 >gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1] gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1] Length = 1049 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDN N ++ + +++ G A NG EA+E + D+++MD+Q+ E+ GL Sbjct: 788 ARILLAEDNITNQQVAQGILKKLGLSADAVANGREAIEALKTLPYDLVLMDVQMPEMDGL 847 Query: 63 EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+QI+ + IP+IA+TA AM+GD E+ G Y++KP+S E ++K+ Sbjct: 848 EATRQIRNPKSPIPNRNIPIIAMTAHAMQGDREKFLAAGMNDYVAKPVSPQDLAEALEKW 907 Query: 120 IGE 122 + E Sbjct: 908 LPE 910 >gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED ++ + Y ++ + A+ + P +I++D L S Sbjct: 1 MAGKILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRLEEQ-PQLILLDWMLPGRS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + +K+ + +IP+I +TA + + D G + YI+KP S I + I+ Sbjct: 60 GIMFIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALW 119 Query: 121 GEA 123 + Sbjct: 120 RRS 122 >gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB [Simonsiella muelleri ATCC 29453] gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB [Simonsiella muelleri ATCC 29453] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED L R +E +G+ + + E+ L + PD+I++D L + S Sbjct: 1 MSIHILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEESKILINKQLPDLILLDWMLPQTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ Q++ DS +E+P+I +TA + D+E G + YI+KP S + + + Sbjct: 61 GVQFVGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 246 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED+ K+ + + GY + +G + L P ++++D+ L ++ Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +Q+++ SE +P+I V+A D+ G + YI+KP S + +K ++ Sbjct: 72 GFEVCRQVRQQSE---VPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|209514967|ref|ZP_03263836.1| PAS modulated sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. H160] gi|209504593|gb|EEA04580.1| PAS modulated sigma54 specific transcriptional regulator, Fis family [Burkholderia sp. H160] Length = 595 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED N+ + DL+ +G+ +G ALE +P +I++D+ + + G Sbjct: 20 ILVVEDVPANLSVLLDLLSGAGFTVSVAEDGESALEQVAYAQPALILLDVMMPGLDGFAT 79 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + +EIPVI +T D+ + + G YI+KP + + ++ Sbjct: 80 CRRLKANLATREIPVIFMTGLTDTIDKVKGLELGAVDYITKPFQHEEVLARVNTHL 135 >gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++D + L + GY + + +ALE + ++ D+ ++D+ + EIS Sbjct: 1 MQTKILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVMMPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI K I+E PVI +TA D+ + G + YI+KP + + +K + Sbjct: 61 GFEICKIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISG 61 K++++V+D E ++ R + GY +G EALE+ + H+PD+I++D+ + + G Sbjct: 6 KRILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLHQPDLILLDLCMPGELDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ +++ + P+I ++A + + + R G + Y++KP M ++ + Sbjct: 66 LDVCVEVRHRGQKP--PIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACLR 123 Query: 122 EA 123 + Sbjct: 124 RS 125 >gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] Length = 223 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED+ L D I+ +G+ + +G+EAL + D++++DI L +I G Sbjct: 1 MSKILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ S +P+I +TA + ++ + + YI+KP S+ + + I + Sbjct: 61 YGVCEVIRQKS---NVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|148976462|ref|ZP_01813168.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3] gi|145964285|gb|EDK29541.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3] Length = 242 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 ++++V+D++ +L + + SG+ +G+E + Q PD+I++D+ L G Sbjct: 6 RILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S +P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 66 TLCQRVRRNS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122 >gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++++D L +++ G+ NG + +PD++++D+ L + SG Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+I + IPVI V+A D+ + G E YI+KP + IK + Sbjct: 61 YDLCKEI---VKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 228 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+E ++ + +ET+GY ++G A E P+++++D+ L I G+E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++DS +PVI +TA D+ + G + Y+ KP + +K + Sbjct: 67 VLKWIRKDS---NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122 >gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 271 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A+ LAR+ PDVI++DI L +I GLE Sbjct: 24 RVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGLE 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ E +PV+ +TA D G + Y++KP SL + ++ + A Sbjct: 84 VLRRIRQQQEG--VPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRA 141 >gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + +D +E +GY +G L A D+ I+DI L G Sbjct: 10 MSKILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIMLPGTDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQ++E +++IP+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 70 FEICKQVRE---VKDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLA 126 Query: 122 E 122 Sbjct: 127 R 127 >gi|262173309|ref|ZP_06040986.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus MB-451] gi|261890667|gb|EEY36654.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus MB-451] Length = 376 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+DN N L L++ Y L +G +AL + + KPD++++DI + E+ G E Sbjct: 6 TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQKPDLVLLDIMMPEMDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ D ELQ+IPVI +TA + DE+R G YI KPIS I + + ++ Sbjct: 65 VCQRMGADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLR 122 >gi|255035394|ref|YP_003086015.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948150|gb|ACT92850.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1366 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I EDN L+E Y L+ +G EAL AR+ P++II D+ + + G+E Sbjct: 1114 TVLIAEDNAELRDYMASLLENQ-YTVLKAADGQEALSWARKVLPNLIISDLMMPRMDGME 1172 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T IK D IPVI +TA + + K G + Y++KP S+ + I Sbjct: 1173 LTVSIKSDERTSHIPVILLTAKSGQESRIDGLKTGADDYLTKPFSVEELTVRVANLI 1229 >gi|254412519|ref|ZP_05026293.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180829|gb|EDX75819.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 381 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D N+ L + ++ET GY +G AL + + PD+I++D+ + ++ G E Sbjct: 10 RILAVDDAPDNLFLMQTILETEGYDLSLVEDGYSALAIVEKSPPDLILLDVMMPQMDGYE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+++S L IP++ +TA+ + G + +I KP+ + + ++ + Sbjct: 70 VTRRIRQNSSLPFIPILLITAY-EQSSAIEGLDAGADDFIRKPVDVGELLARVRSLLR 126 >gi|148558108|ref|YP_001257598.1| polar differentiation response regulator [Brucella ovis ATCC 25840] gi|148369393|gb|ABQ62265.1| polar differentiation response regulator [Brucella ovis ATCC 25840] Length = 134 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 92/123 (74%), Positives = 110/123 (89%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLFRDLIE SGY ++TR+G+EAL+LAR+H PD+I+MDIQL E+S Sbjct: 12 MTKSVMIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVS 71 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 72 GLEVTKWLKDDEELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYL 131 Query: 121 GEA 123 G+A Sbjct: 132 GDA 134 >gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905] gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905] Length = 713 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED +L RD +E + ++ NG E L+ A D+II+DI L ++G E Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGFE 547 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I KQI+ + IP++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 548 ICKQIRA---VNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSR 603 >gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1] gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D +++ + ++ GY +G++A+++A + PDVI++DI + G+E Sbjct: 8 KVLVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAVKVASKFHPDVILLDIMMPGQDGVE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 QI++ EL+ +I +TA + E G + YI+KPI M I Sbjct: 68 TCLQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRR 126 >gi|74317286|ref|YP_315026.1| Hpt sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC 25259] gi|74056781|gb|AAZ97221.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans ATCC 25259] Length = 781 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N ++ + ++ G +G EA++L D ++MD Q+ + G E Sbjct: 522 RVLLVEDNPVNQQVAQAMLAKLGLATTVASDGREAVDLVASRAFDAVLMDCQMPVMDGYE 581 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+ +PVIA+TA A+ GD ++ G + ++ KP SL+ T+ +++ Sbjct: 582 ATRAIRRLP-GARLPVIALTANALHGDRQKCLDSGMDDFLPKPYSLAQLQATLARWLR 638 >gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 230 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++I++D+ + D ++ GY + +G E L +AR+ +PD++++DI + ++ Sbjct: 1 MRQTILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + + + PVI +TA + D+ + G + Y++KP SL + I+ + Sbjct: 61 GFGFLQAYRREHQA---PVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1481 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN+ + + + ++ NG LE ++ +PD+I+ D+ + + G+E+ Sbjct: 1210 ILIVEDNQELRFFLKTIFIQH-FNVIEAENGKSGLEKSKNCQPDIIVSDVMMPGMDGIEM 1268 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ED IP++ +TA + + K G + YI+KP S + I + + Sbjct: 1269 VRALREDITTSHIPIVLLTAKSNTESKIEGMKQGADDYITKPFSAAYLKARIFNLLEQ 1326 >gi|312889015|ref|ZP_07748575.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298533|gb|EFQ75642.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1377 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++++DN+ + R + Y + NG E EL ++H PD++I D+ + +SG+ Sbjct: 1111 KTLLVIDDNQDIREYIRQVF-KLDYNIYEANNGEEGYELIKEHLPDIVISDVMMPGMSGI 1169 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +KED + IPVI +TA + + + +GG + YISKP I + + Sbjct: 1170 ELCSLVKEDMAISHIPVILLTASSSPEIKLKGIEGGADDYISKPFDKEILKARVTGLL 1227 >gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 262 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ++ ++ SGY + +G +ALE+ PD++++D+ L ++ G + Sbjct: 22 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLPKLDGFAV 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +S +P+I ++A + G + Y+ KP S I + Sbjct: 82 CRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 136 >gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185] Length = 221 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VED++ +L + + T Y + +G+E + + D+I++D+ + + Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E++K I+ S +P+I +TA + D+ + G + YI+KP S + + ++ Sbjct: 61 NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550] gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 228 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL+ K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|220907975|ref|YP_002483286.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864586|gb|ACL44925.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 381 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ N+ L + ++E+ GY +G ALE PD++++D+ + ++G E Sbjct: 14 HILVVDDSADNLFLIQTILESEGYEVSTATHGKAALEQVVNAPPDLVLLDVMMPGMNGYE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ + L +P++ +TA G + +I KP+ + ++ + Sbjct: 74 VTRRIRLNKSLPFMPILLITAHDRPR-VAEGLDLGADDFIRKPVEYDELLARVRSLLR 130 >gi|298487166|ref|ZP_07005215.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158190|gb|EFH99261.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1172 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1107 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167 Query: 122 E 122 + Sbjct: 1168 K 1168 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 782 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 841 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 961 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 962 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 992 >gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 788 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 77/123 (62%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED+ +++ + ++E SGY ++G+EAL+ + D+I+MD+QL + G++ Sbjct: 662 RILIAEDDPVSLLSGKRMLEKSGYSVTAAKDGLEALQFLTEQDFDLILMDVQLPTMDGVD 721 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+E + IP+IA+TA+AM GD+E+ + G YISKP+ + E I++ + Sbjct: 722 ATRAIREGRAGEDKASIPIIAMTAYAMTGDKEKFLEAGMNDYISKPVEMETLKEVIERVM 781 Query: 121 GEA 123 +A Sbjct: 782 EKA 784 >gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 998 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 72/121 (59%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 +V++VED+ +N K+ ++ + G + +G+EALE K D ++MD Q+ + GL Sbjct: 876 RVLLVEDHPVNRKVATHMLSSLGVSVVVACDGLEALERVEGADKLDAVLMDWQMPVMDGL 935 Query: 63 EITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++I+E + + ++P++A+TA AM+GD E+ G + Y+SKP+ E + + + Sbjct: 936 DASRKIREMKDWRAKVPIVAMTANAMRGDREKCIAAGMDDYLSKPVVPEKLKEVLSRILR 995 Query: 122 E 122 Sbjct: 996 R 996 >gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 225 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++IV+D+ +L +E G+ + +G++AL+ Q K D++I+DI + + Sbjct: 1 MIPNILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 231 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D + + ++ + N EA +L Q P+++I DI + ++ G Sbjct: 5 AKVLLVDDEPGVRESVQAYLQYGDDFEVRTASNANEAWDLLNQEIPELVISDIMMPQVDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++ED+ Q IPV+ +TA M D + GC+AY+SKP IK I Sbjct: 65 YQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIE 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 893 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+E N L R ++ S YI NG+EA+E +Q+ D+++MDIQ+ + GL Sbjct: 767 VLVVEDSEDNRLLIRTYLKKSPYILDFASNGLEAIEKWQQNHYDLVLMDIQMPLMDGLTA 826 Query: 65 TKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ P++A+TA AM D + GC+ +++KPI + + ++ Sbjct: 827 TRHIRKQERREQRPHTPIVALTAHAMASDHQNAMAAGCDDFLTKPIKRDTLFKALHHHL 885 >gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 241 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E Y+ + +G EALE A + DVI++D+ L G+E Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + K+I+ + P++ +TA + + + + G + YI KP S + +K Sbjct: 69 VCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119 >gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + +L + + GY + N EAL + +Q + ++++D+ + ++GLE+ Sbjct: 6 VLVVDDEKEIAELVEIYLVSDGYKVFKAYNADEALLIMKQEEIHLVLLDVMMPGMNGLEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E S IP+I ++A + D+ GG + Y++KP + +K + Sbjct: 66 CRKIRESS---NIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120 >gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + + G+ A+ R+G++A+E R+ PD++++D+ L + GLE Sbjct: 5 RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLMLPGLDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + +PV+ +TA + D+ G + Y++KP S+ + + ++ + Sbjct: 65 VCRRLQAE---RPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRR 120 >gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++ED +L RD +E + + +G L+ A Q ++II+DI L +++G Sbjct: 1 MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIMLPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+ +++IP++ V+A D+ R G + YI+KP S S + +K +I Sbjct: 61 FEICKQIRA---VKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I+ED+ + ++ +D E GY +G L+LA +P +I++D+ L +++G E Sbjct: 6 TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++E+ E+P+I +TA + D K G + Y++KP S+ + ++ ++ Sbjct: 66 ICRFLREEKL--EMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR 122 >gi|307153265|ref|YP_003888649.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306983493|gb|ADN15374.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 123 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V++VED+++ ++ +L+ G +G+EALE PD++++DI + ++G Sbjct: 1 MREVLLVEDSQVQREMISNLLRDYGLNVSIACDGVEALEFIETFNPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + + +PV+ ++ + D K G +AYI+KP + TIK+ + Sbjct: 61 YEVCRRLKSDPKTKHLPVVLCSSKGEEFDRYWGMKQGADAYIAKPFQPVELLGTIKQLLR 120 >gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D +E + L+ +G EA+++ + ++I+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+++S+ +P+I +TA + DE G + YISKP S I + ++ + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 121 >gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1768 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 76/120 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N ++ + +E G I NG ALE D+++MD Q+ + G Sbjct: 1424 KRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKLAMQSFDLVLMDCQMPVMDGY 1483 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T ++++ EL ++PVIA+TA AM GD+E + G +I+KPI +S+ +T+ +Y+G+ Sbjct: 1484 QATAELRKRPELADLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVSLLYKTLLEYLGD 1543 Score = 113 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + R +E+ G+ R+G EAL ++ V ++D ++ E+ GLE Sbjct: 1283 RILVADDNATARDILRSTLESMGFTVDTVRSGAEALSRCQETDYGVALIDWRMPEMDGLE 1342 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ + V+A A ++ + YI+KPIS S ++ I +G+ Sbjct: 1343 TARRL-LSERTNPPKTLIVSAHADGDFIDKAEQAEISGYITKPISASRLLDGIMSALGK 1400 >gi|331008579|gb|EGH88635.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED E K + +E GY + +G E +E+AR+ PD++++DI L I Sbjct: 1 MKTKVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++ E + +I +TA A D+ + G + Y++KP + + IK Sbjct: 61 GFEVCKTLR--GEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIE 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|224536093|ref|ZP_03676632.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM 14838] gi|224522312|gb|EEF91417.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM 14838] Length = 1346 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E + + + Y + G A+ +AR+ PD+II DI + + GLE Sbjct: 1097 RILVVEDDEDMRQYIVSKLSKT-YNVQEAPEGKSAIHIAREQMPDLIISDIMMPVMDGLE 1155 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK D L IPV+ +TA +++ + + + YI KP + I + I+ I Sbjct: 1156 LCRAIKNDMALAHIPVVLLTAKSLEEHVKDGYQALADDYILKPFNAQILLAKIESLI 1212 >gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++VED+ +L + + T +G EAL +A++ PD++++D ++ +SG+ Sbjct: 4 AKMLLVEDDAALAELLIWHFKREDFDVSHTVDGEEALLMAQETVPDIVLLDWMVESLSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +P+I +TA + D R + G + Y++KP S + + + Sbjct: 64 EVCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123 >gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 650 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ EDN +N ++ DL+E G NG +ALE+A + +I+MD+Q+ + GL Sbjct: 527 RRILLAEDNPINQEVVVDLLEAVGLRVDTADNGRQALEMALRSPYALILMDVQMPGLDGL 586 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+QI+E +P++A+TA A D G ++SKP+ + +++++ E Sbjct: 587 AATRQIREH-LGSAVPIVAMTANAFAEDRAACLDAGMNDHLSKPVEPQRLFDALRRWLDE 645 Query: 123 A 123 A Sbjct: 646 A 646 >gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D E L +++ G + NG EALE ++ D++++DI + + Sbjct: 1 MNKTILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G K++++ + +P+I +TA A ++ + G ++Y++KP+S + + IK + Sbjct: 61 GWTACKELRK---ISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|288929443|ref|ZP_06423288.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] gi|288329545|gb|EFC68131.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] Length = 963 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++++DN + Y + NG + L A Q PDVI+ D+ + + GLE Sbjct: 712 RVLVIDDNVDVAAFIGSQLSDK-YAIIYAHNGRDGLNKAEQMVPDVIVTDLMMPGVDGLE 770 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + IP+I VTA + D + + G +AY++KP + ++K + + Sbjct: 771 VCRRIRANEVTSHIPIIVVTAKITEADRVKGLEAGADAYLAKPFNRDELRMRVEKLLEQ 829 >gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G EAL D++++D+ L +SG Sbjct: 1 MTHVLIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|261409329|ref|YP_003245570.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261285792|gb|ACX67763.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 1219 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++V+D+ N+ ++E NG EA+EL +Q+ D+++MD+ + E+ G Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++++E E ++P+IA+TA AMK D + + G Y+ KPI + ++ ++ Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IVED+++ +LI G EAL R+ + D +++D+ L +++G Sbjct: 952 MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRYDCMVLDLMLTDMTG 1011 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ QI++D L ++P+I T + EE + E+ I K + S ++ Sbjct: 1012 FELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065 Score = 92.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ D+ G+ AL G LE+A+ ++PD II+DIQL I G + Sbjct: 834 LIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMAKSYRPDAIILDIQLPVIDGWSVM 893 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 ++K + + IPV ++ + + ++ G AY+ KP S + Sbjct: 894 GELKSSAVTRHIPVHVIS---VVDEVKQGLMMGAIAYLKKPSSREALEDA 940 >gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ ++ R +E G+ + +G AL + P +I++DI + E+ GL Sbjct: 6 TVLVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRGLPALIVLDIMMPELDGLA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ EL P++ +++ + D + G + Y++KP S + +K + A Sbjct: 66 VCREVRRKHEL---PIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRA 122 >gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ + +E Y +T +G EAL L +++ D+ I+D+ L ++SG+E Sbjct: 2 KLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q ++D +E P+I +TA D+ + G + Y+ KP + + + A Sbjct: 62 VIRQWRDDG--KEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRA 119 >gi|289646781|ref|ZP_06478124.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 1172 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1107 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167 Query: 122 E 122 + Sbjct: 1168 K 1168 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 782 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 841 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 961 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 962 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 992 >gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7] gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+DN ++ L+ + GY ++ ++G EA+++ D+ I+DI + I+G + Sbjct: 5 KILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMV-SDDIDLYILDIMMPIINGYQ 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ S P++ +TA + D+ G + Y+SKP S + +K + Sbjct: 64 ACVEIRKKS---NAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRR 119 >gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece sp. CCY0110] Length = 458 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D N+K+ ++E Y + +G A+E + PD+I++DI++ I G E Sbjct: 5 TILIVDDQLPNLKVLSTMLEGKNYKVRKAVDGESAIEAVQIEPPDLILLDIKMPNIDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K D + +++P+I ++A + D+ + + G YI+KP + I + Sbjct: 65 VCQRLKSDDKTKDVPIIFISALSEVFDKVKAFEVGGIDYITKPFQEEEILARINSQL 121 >gi|94263689|ref|ZP_01287497.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455888|gb|EAT06047.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 500 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 70/120 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ ED+ LN ++ ++L+ G NG EA+E+ARQ ++MDIQ+ E+ G Sbjct: 146 ARVLVAEDHPLNREIAQELLTAVGIEVDMANNGREAVEMARQGAYQGVLMDIQMPELDGY 205 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I+ +E+P+IA+TA A++ + ++ + G ++SKP+ + +T+ +++ Sbjct: 206 RATAAIRALPGGEELPIIAMTAHALEEERKKSLEAGMNDHVSKPVDAEVLYQTLARWLKR 265 >gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 237 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E A+Q PDV+I D+ + + G Sbjct: 12 RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLPDVVITDVMMPRLDGYG 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +++ D L PVI +TA M D + G + YI KP + ++ Sbjct: 72 LLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 127 >gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. CB0205] Length = 253 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D E ++ + G+ NG +ALE R +PDV+++D+ + E+ G Sbjct: 11 KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGFA 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++I+ SE +P+I +TA D + G + Y+ KP S I+ + Sbjct: 71 VTERIRAQSE---VPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRR 126 >gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I++D E+ +K R + GY +G E LE + D++I+D+ L +I G Sbjct: 1 MENILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + K+++ IP+I +TA D+ + G + Y++KP + + I+ Sbjct: 61 LTLCKEVRS---FSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|256420288|ref|YP_003120941.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035196|gb|ACU58740.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 234 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED++ + + +E +GY + + +G A E + D+ ++D+ + + Sbjct: 1 MKARILLVEDDQNVGAVTKKRLEEAGYDVVHSTDGQMAWEQFQSRTFDICLLDVVMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QI+ ++ IP++ +T+ A+ D+ + K G + YI+KP S+ + I+ ++ Sbjct: 61 GFTLAEQIRRKNDF--IPILFLTSKALDEDKIKGFKTGADDYITKPFSMQELLLRIEVFL 118 Query: 121 GEA 123 + Sbjct: 119 KRS 121 >gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL R+ KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +P++ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] Length = 231 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D ++L + GY + NG++AL + + K ++I+DI + I GL++ Sbjct: 4 VLIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+++ IP+I V+A + D+ + G + YI KP S+ + +K I Sbjct: 64 CMKIRKE---YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRR 118 >gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED+ ++ + + GY +G L+LAR +PD++++D+ L + Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+++ E+P++ ++A + D+ + G + Y+ KP L + I + Sbjct: 61 GLEVIREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|66044349|ref|YP_234190.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] gi|63255056|gb|AAY36152.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a] Length = 705 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G AL + ++ PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K + IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|329928581|ref|ZP_08282448.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937697|gb|EGG34106.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 1219 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++V+D+ N+ ++E NG EA+EL +Q+ D+++MD+ + E+ G Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++++E E ++P+IA+TA AMK D + + G Y+ KPI + ++ ++ Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IVED+++ +LI G EAL R+ + D +++D+ L +++G Sbjct: 952 MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRYDCMVLDLMLTDMTG 1011 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ QI++D L ++P+I T + EE + E+ I K + S ++ Sbjct: 1012 FELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065 Score = 91.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ D+ G+ AL G LE+A+ ++PD II+DIQL I G + Sbjct: 834 LIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMAKSYRPDAIILDIQLPVIDGWSVM 893 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 ++K + + IPV ++ + + ++ G AY+ KP S + Sbjct: 894 GELKSSAVTRHIPVHVIS---VVDEVKQGLMMGAIAYLKKPSSREALEDA 940 >gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 249 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D ++ + +GY + G +AL +AR PDVI++D+ L + G+ Sbjct: 13 RRVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLPGLDGV 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +QI+ + V+ +TA + D G + YI+KP S + ++ + Sbjct: 73 EVCRQIR---TFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRR 129 >gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 233 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+ED + + + +E Y ++G E +E + + D+I++D+ + ++SG Sbjct: 7 KNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGE 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I++ IP+I +TA ++ + G + Y++KP + I+ + Sbjct: 67 EVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALR 122 >gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] Length = 1346 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++V++ ED+ +N + L+E G+ +G EAL R D I+MD+Q+ E+ G Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266 Query: 62 LEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 LE T++++ + +E P V+A+TA + D R + G +A++SKPI E + Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322 Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 25/127 (19%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD-VIIMDIQLQEISGLE 63 V+IV N+ N L R ET G A +G EAL+ + V ++D L ++SG Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133 Query: 64 ITKQIKEDSELQEIPVIA----------VTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 + Q++E + E+PV+ +TA + + KPI S Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSNLH 1179 Query: 114 ETIKKYI 120 +T+ + Sbjct: 1180 DTLTALL 1186 >gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115] gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115] Length = 1644 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 K+V++V+D+ N+ ++E L NG +A+++ QH D+++MD+ + E+ G Sbjct: 1524 KRVLVVDDDIRNIFALTAVLERHQMEVLTAENGRDAIQMLEQHPELDIVLMDVMMPELDG 1583 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I+++ + + +P+I++TA AM GD E+ + G YISKP++ + ++ ++ Sbjct: 1584 YETTRLIRQNRKWKNLPIISLTAKAMPGDREQSIESGASDYISKPVNTGQLLSLLRVWLS 1643 Query: 122 E 122 Sbjct: 1644 R 1644 Score = 91.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED+ + DLI +G EALEL + D I++D+ L ++SG Sbjct: 1378 KNLLVVEDDGPQRQNIVDLIGNGDVKTTAVSSGAEALELLARVPFDCIVLDLNLPDMSGF 1437 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME------- 114 E+ +++ L+ IP+I TA + +E + ++ I K + S ++ Sbjct: 1438 ELMTTLQQTPSLRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFLH 1497 Query: 115 TIKKYIGEA 123 ++ + EA Sbjct: 1498 RVEANLPEA 1506 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ + DL G++ L G +AL LA+ ++P I +D+ L + SG + Sbjct: 1258 VLIVEDDPTYAGILLDLARERGFMGLIATRGDQALTLAQTYRPAAITLDLTLPDTSGWAV 1317 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYIG 121 +K D + IPV ++ + RK G +I+K ++ ++ Sbjct: 1318 LDSLKHDPLTRHIPVHIIS--GQEKSLV-GRKLGALDHITKSGDREQLTAAFASLENFLA 1374 Query: 122 E 122 Sbjct: 1375 R 1375 >gi|134296588|ref|YP_001120323.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139745|gb|ABO55488.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|325521611|gb|EGD00393.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 241 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|190015554|ref|YP_001967362.1| DNA-binding response regulator [Bacillus cereus] gi|217956894|ref|YP_002335990.1| DNA-binding response regulator [Bacillus cereus AH187] gi|116584461|gb|ABK00578.1| DNA-binding response regulator [Bacillus cereus] gi|217068621|gb|ACJ82869.1| DNA-binding response regulator [Bacillus cereus AH187] Length = 226 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59 +KKV+IVED ++ + GY + +G L+L ++H ++I+DI L + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+++S +P+I +TA + + D + G + Y++KP SI + K+ Sbjct: 61 DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 >gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] Length = 239 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ NG AL+ AR+ +PD +I+D+ + + G Sbjct: 13 ARVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 73 GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 Query: 123 A 123 + Sbjct: 131 S 131 >gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855] Length = 1346 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++V++ ED+ +N + L+E G+ +G EAL R D I+MD+Q+ E+ G Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266 Query: 62 LEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 LE T++++ + +E P V+A+TA + D R + G +A++SKPI E + Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322 Score = 65.5 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 25/127 (19%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD-VIIMDIQLQEISGLE 63 V+IV N+ N L R ET G A +G EAL+ + V ++D L ++SG Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133 Query: 64 ITKQIKEDSELQEIPVIA----------VTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 + Q++E + E+PV+ +TA + + KPI S Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSSLH 1179 Query: 114 ETIKKYI 120 +T+ + Sbjct: 1180 DTLTALL 1186 >gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] Length = 229 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 60/119 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED ++L + +G+ + EA E ++ P +I++D L + SGL Sbjct: 7 TILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQRRTPHLILLDWMLPDQSGLR 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+ D +LQ IPVI +TA M+ D+ G + Y++KP S IK + Sbjct: 67 LLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRR 125 >gi|326794044|ref|YP_004311864.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326544808|gb|ADZ90028.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 912 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 72/119 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDN LN ++ L+ ++NG EA+E + + D+++MD+Q+ + G Sbjct: 617 KRILVVEDNALNAQILGQLLIMQSADVAFSQNGEEAIEELKSNPYDLVMMDVQMPILDGY 676 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+QI+ + + +P+IA+TA AMKGD E+ + G Y+SKP+ T+ K++G Sbjct: 677 SATRQIRLNPSFKTLPIIAMTANAMKGDREKALESGMNDYLSKPVEPDTLYTTLIKWLG 735 >gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 230 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D++ +KL + G+ + +G EAL +++ D II+DI + ++ Sbjct: 1 MQKKILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIMMPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + I+ P++ ++A D+ + G + Y++KP S+ I+ Sbjct: 61 GLDVCRSIRNS---YNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANF 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 825 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDNE+N ++ ++ +G NG +A+ ++ D+I+MD+Q+ + GL Sbjct: 705 RRVLVVEDNEINQEVATAILAEAGLEVGIAANGADAVRETAANRYDLILMDVQMPLMDGL 764 Query: 63 EITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ + ++P+IA+TA AM+GD E+ G +++KPI +++++ Sbjct: 765 EATRRIRALPGVPADLPIIAMTAHAMRGDWEKSLAAGMNDHLTKPIDPRRLFAVLERWL 823 >gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888] gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase [Hyphomicrobium denitrificans ATCC 51888] Length = 456 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL ++ + L +G +AL+L + DV+++D+ + + Sbjct: 1 MTARVLVVDDILANVKLLEARLQAEYFEVLTANSGRQALDLLERESVDVVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E + IK IPV+ VTA D+ + + G + +++KP+ + +K Sbjct: 61 GFETCRHIKASHATHHIPVVMVTALDQPSDKVQGLESGADDFLTKPVDDIALVTRVKNLA 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 94.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+DNE + + + G A R+ AL + D++++ + L GL Sbjct: 157 RVLLVDDNERSAARLLEFLSK-GNDAFAERDMHAALTKLTESNFDLLVVSLSLDAADGLR 215 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P+I + + R G Y+ +PI + +K I Sbjct: 216 LCSQVRSLERTRHLPIIMLVEPGDEARLLRGLDMGVNDYLMRPIDRHELLARVKTQIKR 274 >gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 224 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|256829709|ref|YP_003158437.1| winged helix family two component transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578885|gb|ACU90021.1| two component transcriptional regulator, winged helix family [Desulfomicrobium baculatum DSM 4028] Length = 227 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVEDN + D ++ GY ++G+ L LA H D+I++D+ L I G + Sbjct: 2 RILIVEDNSDILANVLDYLQLKGYTVDCAQDGLGGLHLAVTHAYDLIVLDVMLPGIDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I K+++ED++L +IPVI +TA D + G + Y+ KP +LS I+ + A Sbjct: 62 ICKRLREDAKL-DIPVIMLTARDTLDDRIQGFNTGTDDYLVKPFALSELHARIQAVLRRA 120 >gi|217969666|ref|YP_002354900.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217506993|gb|ACK54004.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 256 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L D +E G +G E H+ D+I++D+ + GL Sbjct: 6 HILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLMMPGEDGLT 65 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ P++ +TA D + G + Y++KP I+ + Sbjct: 66 LCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIRAVLRR 125 >gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1407 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + +L+ G +G EALE + +I+MD+Q+ + GL+ Sbjct: 1037 RVLLVEDNPINRLVALELLHAVGLTVETAEDGAEALERVKAADYALILMDMQMPVMDGLD 1096 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ ++ P++A+TA A D + G +I+KP+ T+ K++ Sbjct: 1097 ATRAIRALPGWRDKPILAMTANAFDDDRRTCVEAGMNDFIAKPVEPERLYATLHKWL 1153 >gi|302187737|ref|ZP_07264410.1| response regulator receiver [Pseudomonas syringae pv. syringae 642] Length = 1172 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1107 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1108 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167 Query: 122 E 122 + Sbjct: 1168 K 1168 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893 Score = 78.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992 >gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 239 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + R + G+ + R+G EA +PD++++DI L + GLE Sbjct: 7 RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPDGDGLE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ +E E+PV+ +TA D+ G + Y++KP S+ + I+ + Sbjct: 67 LCRRWREQGV--EVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRR 123 >gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 242 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I +D ++ + G+ + +G EAL L+R H PD+I++D+ L +SGL+ Sbjct: 12 TVLIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLD 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+++S +P+I VTA + + D + G + Y++KP +S + I+ + Sbjct: 72 VCRTIRQES---SVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRR 127 >gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 232 Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G+ + +G +AL++ + D++++D+ + + +G Sbjct: 1 MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVL-DNTIDLLLLDVMMPKKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + PVI +TA + D + G + Y+ KP + + I+ + Sbjct: 60 IDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++IV+D+ +L +E G+ +G++AL+ + K D++I+DI + + Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|212691087|ref|ZP_03299215.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855] gi|212666319|gb|EEB26891.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855] Length = 1308 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+ + + Y + NG EALE+ Q ++I D+ + + GLE+ Sbjct: 1067 VLVVEDNDDFRRFLVGCL-KEHYQVFEASNGKEALEILSQQSVQMVISDVMMPVMDGLEL 1125 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K D IPVI +TA + + G + YI+KP +L I + I+K + Sbjct: 1126 CHAVKTDIRFSHIPVILLTARTAEEHVLGGLREGADDYITKPFNLDILLLRIQKLL 1181 >gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 212 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++++D+ + L +D +E GY + NG EALE+ Q PD+II D+ + E+ G Sbjct: 10 KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQSPVPDMIICDVMMPEMDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++++DS IP + ++A D + + G + Y+ KP + ++ + Sbjct: 70 YTFVEKLRDDSRTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129 Query: 122 E 122 Sbjct: 130 R 130 >gi|165918289|ref|ZP_02218375.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] gi|165918149|gb|EDR36753.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] Length = 245 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + G+ A ++G E + + D++I+DI + GL Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ +S IP++ +TA + + D + G + Y+SKP + + ++ + + Sbjct: 66 LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122 >gi|153206919|ref|ZP_01945737.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|212219514|ref|YP_002306301.1| two-component response regulator [Coxiella burnetii CbuK_Q154] gi|120576992|gb|EAX33616.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|212013776|gb|ACJ21156.1| two-component response regulator [Coxiella burnetii CbuK_Q154] Length = 245 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + G+ A ++G E + + D++I+DI + GL Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ +S IP++ +TA + + D + G + Y+SKP + + ++ + + Sbjct: 66 LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122 >gi|114563674|ref|YP_751187.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] gi|114334967|gb|ABI72349.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella frigidimarina NCIMB 400] Length = 331 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D N+++ + ++E Y + ++G EAL L + PD+I++D+ + ++G Sbjct: 9 MPTILIVDDEPANLRVLKKMLEDQ-YRLIFAKSGEEALRLIERDLPDLILLDVMMPGMTG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K + +PVI +TA + + DE + G YI+KP+S ++ ++ ++ Sbjct: 68 FEVCQQLKTVQRTKAVPVIFITALSDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 126 >gi|320324583|gb|EFW80660.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 1170 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|304309811|ref|YP_003809409.1| Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain [gamma proteobacterium HdN1] gi|301795544|emb|CBL43742.1| Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain [gamma proteobacterium HdN1] Length = 338 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D +N+++ R +E Y + ++G +ALELA PD+I++DI + E+SG Sbjct: 9 RTLLLVDDEPVNLQVLRYALEND-YNLIFAKSGQKALELANDAHPDLILLDIMMPEMSGY 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K++S + IPVI VT+ + +EE+ + G YI+KP+S +I ++ ++ Sbjct: 68 EVCKALKDNSNTRSIPVIFVTSLDNEMNEEKGLELGAVDYITKPVSPAIVRARVRTHL 125 >gi|298486528|ref|ZP_07004588.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159005|gb|EFI00066.1| Sensor histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 645 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G EA+ A +I+MD +L + G Sbjct: 517 RSILLVEDNPVNRTVVQAMLRNLGCEVDVAVDGAEAVMKASAGNHALILMDCRLPVMDGY 576 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + G + Y++KP + + + +++ Sbjct: 577 EATRRIRQLSGLERIPIIALTANALQGDRDACLHAGMDDYLAKPFKHADLQQVLHRWL 634 >gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E L+ GY +G++AL H D++++D+ L SG Sbjct: 1 MTRILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGASG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S+ +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRAKSK---VPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 246 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D +L + G+ +G EAL AR +PD +I+D+ L ++ GL Sbjct: 22 RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLT 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 82 VLGRLRR--EAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 139 >gi|257487872|ref|ZP_05641913.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1170 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV++V+D KL D + GY ++ +G+EA++ ++K +II+D+ + + G Sbjct: 5 KVLVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPRMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +QI++DS+ +P+I +TA + DE + + G + YI+KP S I + I Sbjct: 65 EVCRQIRKDSK---VPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRR 121 Query: 123 A 123 A Sbjct: 122 A 122 >gi|208702171|ref|YP_002267282.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|208658026|gb|ACI30396.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59 +KKV+IVED ++ + GY + +G L+L ++H ++I+DI L + Sbjct: 1 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+++S +P+I +TA + + D + G + Y++KP SI + K+ Sbjct: 61 DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117 >gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 10/131 (7%) Query: 1 MLK--------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM 52 M+ +V++V+D + L + G+ ++G++AL A PDV+I+ Sbjct: 1 MMATQARSDAPRVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVIL 60 Query: 53 DIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 D+Q+ + GLE ++++ E+PV+ +TA D + + G + Y++KP L Sbjct: 61 DVQMPRMDGLETLERLRARD--PELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEV 118 Query: 113 METIKKYIGEA 123 ++ + A Sbjct: 119 AARVEGLLRRA 129 >gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1358 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ +DN L+ G+ +G AL A+ H P +++ D+ + + G Sbjct: 686 SARILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDG 745 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K + Q +PVI ++A A + + G + Y+ KP S + + + Sbjct: 746 FGLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARL 804 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 60/110 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ D +E G+ R+G+E +E +PDV ++D+ L I G Sbjct: 1211 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDGY 1270 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 E+ ++++ +++ ++A+T + + ++ G + +++KPI++ Sbjct: 1271 EVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1320 >gi|71735952|ref|YP_274795.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556505|gb|AAZ35716.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1170 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 94.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYECLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|303258341|ref|ZP_07344344.1| DNA-binding response regulator ColR [Burkholderiales bacterium 1_1_47] gi|330999877|ref|ZP_08323578.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|302858787|gb|EFL81875.1| DNA-binding response regulator ColR [Burkholderiales bacterium 1_1_47] gi|329573562|gb|EGG55164.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVEDNE + +E+ Y T +G++AL L +K D+I++DI + + G Sbjct: 1 MPTILIVEDNEDIRLNLVEYLESKNYQTDNTDDGLKALALTIVNKYDLIVLDIMIPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ P+I ++A D G + YI KP SL+ + I+ + Sbjct: 61 LRLCRELRSRGNT--TPIIILSAKDSTDDRIMGLSEGADDYIVKPFSLAELLLRIQAVLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 213 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED + +E G+ L +G LELA +PD+I+ D+ + + G Sbjct: 1 MKKILVIEDQPEMRRSLETTLEMEGFEVLLAEDGRMGLELALAARPDLILCDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ D+ +P I +TA A K D G + Y++KP++ S + I + Sbjct: 61 HGLLQVLRADNRTAHLPFIFLTARADKQDARTGMNLGADDYLTKPVAKSDLLAAISSRLQ 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + L +E GY + NGM+AL+ D+ I+D+ L +I Sbjct: 1 MNESILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA D+ G + YI+KP + + +K + Sbjct: 61 GFRICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 964 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 75/117 (64%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N ++ ++L+E G ++G++A+ + + D+I+MDIQ+ E+ G E Sbjct: 695 RVLLVEDNPINQQVAQELLEQCGLQVSIAQDGVKAVAAVERERFDLILMDIQMPEMDGYE 754 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ E +P+IA+TA AM GD +R G + +++KPI + + + K++ Sbjct: 755 ATRRIRQLPERARLPIIAMTAHAMSGDADRSLAAGMQGHLTKPIEIQPLYDMLGKWL 811 Score = 35.9 bits (83), Expect = 2.0, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 38/122 (31%), Gaps = 25/122 (20%) Query: 13 LNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEISGLE------ 63 + + + G + L L +Q H ++I+ Q E Sbjct: 559 VVRRAIEQNLLGFGVKVEMVDDAEGLLALLKQAYAHPVALVIIGWQA-----YEAGVVER 613 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC-----EAYISKPISLSIFMETIKK 118 + +++++ ++ V+A + G + I K S ++++ Sbjct: 614 LKRRLQQQPHKPKVLVLA------PSFKVASLNAGAAHYGVDGVIPKACSPLKLANSVER 667 Query: 119 YI 120 + Sbjct: 668 LL 669 >gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + +E + +G L A D+I++D L + GLE Sbjct: 2 RILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLPGLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +Q++E + P+I +TA D G + Y+ KP + + I+ + Sbjct: 62 ICRQLRESG--AKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRR 118 >gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 240 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED +L + +G+ + A PDVI++D L SGL + Sbjct: 7 VLIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWMLPGESGLAL 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+ + + IP+I +TA + D G + YI+KP S + ++ + Sbjct: 67 AKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRR 124 >gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED +L +D +E S + +G LE A++ ++II+D+ L EI G Sbjct: 1 MKKILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI++ ++ P++ V+A D+ R G + Y++KP S S + +K +I Sbjct: 61 FEICKQIRK---IKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|107023338|ref|YP_621665.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690421|ref|YP_836044.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733741|ref|YP_001765688.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206560945|ref|YP_002231710.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|105893527|gb|ABF76692.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116648510|gb|ABK09151.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169816983|gb|ACA91566.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|198036987|emb|CAR52908.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 241 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|330985282|gb|EGH83385.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1170 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1046 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1106 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 93.7 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 780 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 840 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 891 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 960 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 990 >gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED +L +D +E S Y +G +A + + I+D+ L G Sbjct: 1 MSRILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K I+++ + IP+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKAIRKE---KNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229589254|ref|YP_002871373.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229361120|emb|CAY47983.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 782 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 59/110 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + + ++ G + +G EAL+ + D+++MD + + G Sbjct: 659 ARILLVEDNAVNQLVAKGMLSKLGCEVIVAAHGGEALKFLEDQRFDMVLMDCNMPVMDGY 718 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 E ++QI+ ++P++A+TA A+ + ER R G Y++KP Sbjct: 719 EASRQIRRSGRWPDLPIVALTANALSEERERCRAAGMNDYLAKPFRREEL 768 >gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ +E G+ L ++GM A+ + ++H+P V+I+D+ + + G E Sbjct: 11 KILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K+ + I +TA D + G + Y+ KP S + I I Sbjct: 71 VCRMLKKIQNVAT---IMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIR 125 >gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 237 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED +L + +GY + A + + P++II+D L S Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K+++ + + +P++ +TA + + D+ G + Y++KP S + ++ + Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|154706185|ref|YP_001425412.1| two-component response regulator [Coxiella burnetii Dugway 5J108-111] gi|154355471|gb|ABS76933.1| two-component response regulator [Coxiella burnetii Dugway 5J108-111] Length = 245 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + G+ A ++G E + + D++I+DI + GL Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ +S IP++ +TA + + D + G + Y+SKP + + ++ + + Sbjct: 66 LCRQMRANS---TIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRS 122 >gi|121603982|ref|YP_981311.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120592951|gb|ABM36390.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 1158 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G RNG EA+ D+++MDI + + G Sbjct: 1034 RKVLLVDDDVRNIFALTSALENKGLRVEIGRNGFEAISKLNDVSDIDLVLMDIMMPGMDG 1093 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE T++I++D+ ++P+IAVTA AMK D+E+ + G Y++KPI L ++ ++ Sbjct: 1094 LEATRRIRQDARFPKLPIIAVTAKAMKDDQEQCLEAGANDYLAKPIDLDRLFSLLRVWM 1152 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED+ + ++ DL Y L + LA Q P+ I++D+ L + GL + Sbjct: 768 VLVIEDDVVFAQVLYDLAHELNYSCLVAHGAEDGFALATQFVPNAILLDMGLPDRPGLSV 827 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++KE+ + IPV V+ E + G Y KP S E +K Sbjct: 828 LQRLKENPHTRHIPVHVVSGDDRS---EAALQMGAIGYALKPTSRDQLKEVFRKL 879 Score = 67.5 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 42/91 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++VE++ L +LI G EAL L D +I+D++L +I G Sbjct: 888 KHVLLVENDALQRTSLMELIGDDDVQITAVATGGEALALLAGTIFDCMIIDLKLPDIQGY 947 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ +++ +S PVI T + EE Sbjct: 948 ELLQRMSTESIGSFPPVIVYTGRTLTRQEEA 978 >gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +AL KPD++++D+ L Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLPGRD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + I+ +S +PV+ +TA + D + G + YI KP + I+ + Sbjct: 65 GIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARL 121 Query: 121 GEA 123 + Sbjct: 122 RRS 124 >gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL+ K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 56/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + +E G+ +G + E A+ PD+II DI + +G Sbjct: 16 KILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYA 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ED +L PVI +TA M D + G + YISKP +K I Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYISKPFDPDELSARVKNVINR 134 >gi|300863635|ref|ZP_07108575.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506] gi|300338377|emb|CBN53719.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506] Length = 945 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN ++ + + + RNG E LE+A+ PDVI+ D+ + +SGL+ Sbjct: 594 TVLVVDDNPDLRTYVARILRQANFSVVLARNGAEGLEMAKSDDPDVIVTDLMMPVVSGLD 653 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + I+ED L+ PVI +TA A + + G +AY+SKP + + ++ + Sbjct: 654 LIRMIREDDVLKGTPVILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLV 710 >gi|237712721|ref|ZP_04543202.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229447235|gb|EEO53026.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1026 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ L++ Y+ NG +AL +AR++ PD+I+ D+ + E+ G Sbjct: 780 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 838 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116 E+ +K D E IPV+ +TA + D + G +AYI+KP S+++ I Sbjct: 839 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 898 Query: 117 KKYIGEA 123 + + A Sbjct: 899 RALLRRA 905 >gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 922 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED +NM + R L+E G+ NG + L++ R + DVI+MDIQ+ ++G+E Sbjct: 801 RVLLVEDERVNMLMARRLLENLGHTVTCAENGEKCLQVLRGERFDVILMDIQMPVMNGME 860 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T I+ + + IP++A+TA A + D E K G YISKP T++++ Sbjct: 861 VTHLIRNSEDFRHVADIPIVALTAHATRRDREAALKAGMNEYISKPFEKEHLEATLQRFA 920 Query: 121 GE 122 G Sbjct: 921 GR 922 >gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + G+ +G +A+ +A +P V+++D+ + + GLE Sbjct: 8 RILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMPGMDGLE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++KE E +++ VI +TA D + G + Y+ KP S + I+ + Sbjct: 68 VCRRLKE--EGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLR 123 >gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED +L RD +E + + +G + LE A D++I+DI L ++SG Sbjct: 1 MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ KQI+ ++IP+I V+A + D+ R G + YI+KP S + +K ++ Sbjct: 61 FEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii AYE] gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU] gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB0057] gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB307-0294] gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB900] gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624] gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter sp. DR1] gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB056] gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB058] gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB059] gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013150] gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013113] gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6014059] gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii AYE] gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB0057] gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB307-0294] gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624] gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter sp. DR1] gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2] gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates and phosphorylates sensor PhoR [Acinetobacter calcoaceticus PHEA-2] gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013150] gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013113] gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6014059] Length = 236 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D L +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 980 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 K+ +V+D +N+++ + + Y NG+EAL + +KPD+I++D+ + +++G Sbjct: 725 KIFVVDDEPVNIQVLINHLTLQNYAISIASNGLEALAQVEKGYKPDIILLDVMMPKMTGY 784 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++++E + E+P++ +TA D + G Y++KPIS + +K ++ Sbjct: 785 EVCRKLREVFPVNELPIVMLTAKNQVSDLVEGLESGANDYLTKPISKHELIARLKMHL 842 >gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125] gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125] Length = 231 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 2 LKKV--MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 ++++ ++ +D + L +E GY ++ +G EA+++ + D++I+DI + I Sbjct: 1 MERISILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIMMPNI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +QI+E +P+I ++A D+ + G + Y++KP + + + Sbjct: 61 DGYEVARQIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] Length = 236 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 10/131 (7%) Query: 1 MLK--------KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM 52 M+ +V++V+D + L + G+ ++G++AL A PDV+I+ Sbjct: 1 MMATQASSDAPRVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVIL 60 Query: 53 DIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 D+Q+ + GLE ++++ E+PV+ +TA D + + G + Y++KP L Sbjct: 61 DVQMPRMDGLETLERLRARD--PELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEV 118 Query: 113 METIKKYIGEA 123 ++ + A Sbjct: 119 AARVEGLLRRA 129 >gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 250 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M K +++V+D +L + +GY +G EA+E+ + KPD+II+D+ L Sbjct: 6 MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 65 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I G +T++I+++ PV+ +TA D+ G + Y++KP SL + I Sbjct: 66 PDIDGFTVTRRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARI 123 Query: 117 KKYIGE 122 + + Sbjct: 124 RAILRR 129 >gi|229824516|ref|ZP_04450585.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271] gi|229786117|gb|EEP22231.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271] Length = 237 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + ++ + GY ++G +A++LA+Q D++I+DI + G+E Sbjct: 2 RILLAEDEQQLARVVMTALAHEGYQVDWAKDGQQAVQLAQQTVYDLMILDIMMPVKDGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ VI +TA A D G + Y++KP SL + ++ Sbjct: 62 ALKEIRASGHTNH--VIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118 >gi|224538757|ref|ZP_03679296.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM 14838] gi|224519649|gb|EEF88754.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM 14838] Length = 1434 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+EDNE +++ Y+ + NG + L+ A PD++I DI + E+ G+E Sbjct: 1170 RILIIEDNEELRHFICNVLSKD-YVVFEAENGKQGLDKALAEMPDIVISDIMMPEMDGIE 1228 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 K++K +S + IPVI ++A + D+ + + G + YI+KP S + + Sbjct: 1229 FLKRVKANSNICHIPVILLSAKSSLSDQIQGLEYGADEYITKPFSSTYLKAKVDSL 1284 >gi|189463212|ref|ZP_03011997.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136] gi|189430191|gb|EDU99175.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136] Length = 1425 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +++ Y L+ NG LE PDV++ D+ + E+ G+E Sbjct: 1156 TILVVEDNDELRHFIVHILQKE-YRVLEAPNGRIGLEKVLAEMPDVVVSDVMMPEMDGIE 1214 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + + IPVI ++A A D + + G + YI+KP S + +K + Sbjct: 1215 LLNAVKTNHNVCHIPVIILSAKASLDDRIKGLEYGADGYITKPFSSAYLRARLKSVL 1271 >gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|115352497|ref|YP_774336.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282485|gb|ABI88002.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 251 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 11 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 71 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + + +E Y + +G E L++A + D++I+D L ++ GL Sbjct: 2 RILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K++K PV+ +TA D G + Y++KP + + + ++ + + Sbjct: 62 VLKELKSQKNT--TPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRS 119 >gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M +K V+++ED + + + GY +G+ L R+ PD++++D+ L Sbjct: 1 MERKPLVLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLMLPV 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++I++ P+I +TA D+ G + Y+ KP S+ + ++ Sbjct: 61 LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 117 Query: 119 YIGE 122 ++ Sbjct: 118 HLRR 121 >gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D E ++L ++ G+ R G EA++ AR +PD +I+D+ + + G + Sbjct: 2 LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDAV 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+++ D + PV+ +TA D G + Y++KP SL + ++ + Sbjct: 62 KRLRADG--CDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRR 116 >gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1203 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 76/117 (64%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY NG AL++ + + D ++MDIQ+ + GL Sbjct: 1081 VLLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMIDKTQYDAVLMDIQMPVMDGLTA 1140 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 TK++++ +E+PVIA+TA AM GD E+ G A+I+KPI L+ ET+ +IG Sbjct: 1141 TKELRKRYSTEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIG 1197 Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++++DN ++++ ++ + +G E L ++ D++++D + E+ G+E Sbjct: 937 KTLVIDDNPTALQIYSSVLRDFHFNVDTAASGPEGLYKLGKNPVDLLLLDWMMPEMDGIE 996 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + KQI D L++ P +I +TA+ + + + + A + KP S + + Sbjct: 997 VIKQIDAMVADGRLEKRPIIIMMTAYTAEPMHKDVEQANVYALLQKPFKASALFDEV 1053 >gi|153809460|ref|ZP_01962128.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185] gi|149127920|gb|EDM19142.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185] Length = 1338 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D++ T GY NG EAL + R+ PD++I DI + E+ G Sbjct: 1078 QRILIVEDNDDLRNYLVDMLRT-GYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMGGD 1136 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK D E+ IPV+ +TA + + G +AYI+KP S+ I TIK + Sbjct: 1137 ELCATIKGDLEMSHIPVVLLTALGDEKHMLEGLEIGADAYITKPFSVGILKATIKNILTN 1196 Query: 122 EA 123 A Sbjct: 1197 RA 1198 >gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1666 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 73/119 (61%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDNELN ++ +++ +G + NG A++ A+ D+I+MD+Q+ + G+ Sbjct: 1345 RVLLVEDNELNQEVASEILGDAGLVVDIAANGQIAVDKAKTGHYDLILMDMQMPVMDGVT 1404 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+ Q++P+IA+TA AM+ D E+ + G +I+KPI T+ K++G Sbjct: 1405 ATREIRAMG-FQDLPIIAMTANAMQADREKCLEAGMNDHIAKPIDPDSMFATMMKWLGR 1462 Score = 96.0 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQE 58 +++++V+DNE + D++ + + G A++ R+ +V+ +D Q+ Sbjct: 1197 RRMLVVDDNENARAVLVDMLSSMSFEVDSVEGGAAAIDAIREAMLDQPYEVVFLDWQMPG 1256 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + GLE+ ++I D L P +I VTA+ + + + + KP++ + ++I Sbjct: 1257 MDGLEVAERI-HDIRLPFPPHLIMVTAYGREEIIKGAQAADIGEVLVKPVNPAALFDSIM 1315 Query: 118 KY 119 + Sbjct: 1316 RV 1317 >gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 234 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ ++ ++ T G+ + +G +A++ R +PD+I++D+ L + Sbjct: 1 MTSRILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI +++ +S +P+I +TA D + + G + YI KP + + I+ + Sbjct: 61 GIEICTRVRAESG---VPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|189351171|ref|YP_001946799.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|189335193|dbj|BAG44263.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 241 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1] gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1] gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + D++I+DI L E+ Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEVVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1287 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 66/116 (56%), Gaps = 2/116 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61 ++++VEDNE+N L +L+ G NG EAL D+++MD+Q+ + G Sbjct: 939 RILLVEDNEMNRTLAVELLRRRGAQIDSAVNGCEALARILHEAAPYDIVLMDLQMPGMDG 998 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E T++I+ D +P+IAVTA AM + +R R+ G Y++KP+++ + I+ Sbjct: 999 YEATRKIRADLRFSALPIIAVTAHAMVEERDRCREVGMNGYLTKPLNVPEMINLIR 1054 >gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ + + R +E GY + +G+ LE AR+ +PD++I+D+ L + G Sbjct: 3 MSTILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVMLPRLDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++SE +P++ +TA + D + G + Y++KP SL + ++ + Sbjct: 63 FSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] Length = 252 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 50/110 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D + +E G+ +G E A++ PD++I D+ + + G Sbjct: 26 ARLLLVDDEPGLRTAVQAYLEDEGFDVTTANDGEEGWTAAQELIPDLVISDVMMPRLDGY 85 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + K+++ D L PVI +TA M D + G + YI KP Sbjct: 86 GLLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 135 >gi|299144931|ref|ZP_07037999.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298515422|gb|EFI39303.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1372 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + L NG E + A PD+++ DI + + G+ + Sbjct: 1114 LIVEDNEEIQKYISESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IP+I +TA D+E + G ++Y++KP S S+ I + Sbjct: 1173 RQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227 >gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily) [Arthrospira platensis NIES-39] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + GY + G++A LA+ H D++I+D L SGLE Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I Q++ P++ +TA D + G + Y+ KP L + ++ + Sbjct: 62 ICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 800 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N + + G + +G+ L++ ++ D+++MDI + I G Sbjct: 680 KKVLIVDDDHRNRFALQSALGKQGITVISAEDGVACLDILEKNTTIDLVLMDIMMPHIDG 739 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K I++ + +P+IA+TA AM D+++ + G Y+SKP++L ++ ++ Sbjct: 740 FETMKHIRQSRKHIHLPIIALTAKAMNHDKQKCLQAGANDYVSKPVNLQQLFSVMRVWL 798 >gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 241 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L + +E Y+ + +G EALE A + DVI++D+ L G+E Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + K+I+ + P++ +TA + + + + G + YI KP S + +K Sbjct: 69 VCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119 >gi|21229109|ref|NP_635031.1| putative transcriptional regulator [Methanosarcina mazei Go1] gi|20907666|gb|AAM32703.1| putative transcriptional regulator [Methanosarcina mazei Go1] Length = 292 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D N++L + Y G EAL + + KPD++++D+ + E++G E Sbjct: 16 KVLIVDDMRENVELMEAYLAVEPYKVFCAYGGKEALRIVDKEKPDIVLLDVMMPEVNGYE 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +KE+ E Q IPV+ +TA + D + + G + +++KPI+ +K + Sbjct: 76 VCKILKENPETQFIPVLMLTALSELEDRIKGIEVGADDFLTKPINRLELKTRVKSLLR 133 >gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 7169] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EI 59 M K+++VED +L ++ S + +Q + A KPD+I++D + Sbjct: 1 MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG++ +++K++ +IP+I +TA + ++ G + YI+KP S + ++ Sbjct: 61 SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ + L+E +GY +G EALE PD+++ D+ + + GL Sbjct: 6 TVLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPVMDGLG 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +P++ +TA + D G + Y+SKP + ++ Sbjct: 66 LCRMLRAAGNA--VPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARR 122 >gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED K+ +E Y + NG +AL+L + ++II+D+ + ++SG Sbjct: 1 MDKILIVEDEYKIRKIITSYLE-EDYEVYEAENGEKALKLFADNNFNLIILDLMIPKLSG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I++ S+ IP+I +TA + + ++ G + YI+KP S IK + Sbjct: 60 EKVCQKIRQSSQ---IPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|302843336|ref|XP_002953210.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f. nagariensis] gi|300261597|gb|EFJ45809.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f. nagariensis] Length = 1844 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 1 MLKKVMI--VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQL 56 M K+ ++ V+D+ +N + + L+ ++GY + +G EAL PD++++D + Sbjct: 768 MYKRFLLLSVDDDHVNQSVVKSLLGSTGYEVVAVPSGPEALRYVATAPALPDLVLLDCMM 827 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G E+ ++++ + +P+I V+A + G + Y++KP + + I Sbjct: 828 PEMDGYEVLQRLRAMTPNVHVPIIMVSAQTEEEHVVCGLDLGADDYVTKPFKRNELLARI 887 Query: 117 KKYI 120 + + Sbjct: 888 RAQL 891 Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 6 MIV--EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +IV +D+++N + + ++ + Y ++ G + L PD++++D L + Sbjct: 991 LIVCIDDDDVNQVVLQGMLASQHYRYVRASTGAQGLSYVCGTHNGGIPPDLVLLDCSLPD 1050 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G ++ + I++ Q++PVI ++A + K G Y++KP + + I++ Sbjct: 1051 MTGFDVCRCIRQMYNKQQVPVIMLSARHNESAVVEGLKCGANTYVTKPFRRNELLARIRQ 1110 Query: 119 YIG 121 ++ Sbjct: 1111 HLR 1113 >gi|307153247|ref|YP_003888631.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983475|gb|ADN15356.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 379 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY + NG A+ + PD+I++DI + ++G ++ Sbjct: 6 ILVVDDTPDNVRLLATMLSEKGYKVRKALNGQIAINTVQTVPPDLILLDINMPGMNGYQV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D + Q+IPVI ++A D+ + K G YI+KP + ++ + Sbjct: 66 CQALKSDEKTQDIPVIFISALDDVLDKVKAFKVGGVDYITKPFQGEEILVRVENQL 121 >gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes] gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes] gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes] gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes] gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes] gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1] Length = 2450 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++E G + NG A+E+ +++ DV++MDI + E+ G Sbjct: 2330 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2389 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E + I+++ + ++P+IA+TA A+K D E+ G Y+ KP+ +E I+ Sbjct: 2390 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2445 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 8/123 (6%) Query: 4 KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ I+ED+ ++ + G+ L G L +A ++ P I +DIQL + G Sbjct: 2060 RILLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMANEYLPHAITLDIQLPVVDGW 2119 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKY 119 + +++K + + IPV ++ D+ G Y++KP+S L + + Sbjct: 2120 SVLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHF 2175 Query: 120 IGE 122 + Sbjct: 2176 LER 2178 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 46/92 (50%), Gaps = 6/92 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ++++++ED+++ L+ E S G EAL + + D +++D+ L ++ Sbjct: 2180 SRRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLEEGEYDCLVIDLLLPDMD 2239 Query: 61 GLEITKQIKEDSELQEIPVIA-----VTAFAM 87 G ++ +++K +++P++ +TA Sbjct: 2240 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2271 >gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VED + + + +GY +G AL+ R+ PD++++DI L + G Sbjct: 5 RKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMDGT 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ IPVI VTA + D + G + YI KP S + I Sbjct: 65 AVCRELR---RFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRR 121 >gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 993 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 76/125 (60%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 K+V++V+D E N +L +++ +G + NG EAL++ + + ++++MD+Q+ Sbjct: 582 KRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYELVLMDMQMP 641 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G T+ ++E + PVIA+T AM+GD E+ GC+ +++KP++L +E + Sbjct: 642 VLDGYSATRLLREREDT--TPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLDELLEMVS 699 Query: 118 KYIGE 122 +Y+GE Sbjct: 700 QYLGE 704 >gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1] gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + L ++ G+ L+ +G E L+L ++HK +I++D+ + ++ G++ Sbjct: 5 TILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + E+P+I +TA + D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---VAEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRR 120 >gi|323525232|ref|YP_004227385.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382234|gb|ADX54325.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 241 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL+ K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|224535984|ref|ZP_03676523.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus DSM 14838] gi|224522398|gb|EEF91503.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus DSM 14838] Length = 1111 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++VEDNE + L L+ T Y NG EALE+ D+I+ D+ + + G Sbjct: 852 SHTLLLVEDNEDLLGLMVKLLGTD-YKIHTATNGKEALEIVESEDIDLIVSDVMMPVMDG 910 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E + IK + + IP+I +TA + D + G +A+I+KP +LS+ I + Sbjct: 911 IEFCRSIKGNFDTSHIPLILLTAKKQEEDRVEAYESGADAFITKPFNLSVLHARIGNLL 969 >gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D +KL + GY L +G+EALE+ + HK D+II+D+ + ++ G++ Sbjct: 5 TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVMMPQMDGIQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E++ P+I ++A + + D+ G + Y++KP S + IK + Sbjct: 65 ACMKIREEN---NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRR 120 >gi|81300626|ref|YP_400834.1| response regulator receiver domain-containing protein [Synechococcus elongatus PCC 7942] gi|81169507|gb|ABB57847.1| response regulator receiver domain protein (CheY-like) [Synechococcus elongatus PCC 7942] Length = 121 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE N + + G+ + +G ++ AR+ +PD+I+MD+ L + G Sbjct: 1 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+Q+K D ELQ+ PVIA+TA AM D E+ GC+ Y +KPI L + I + + Sbjct: 61 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 232 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 62/117 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED+E +L G+ QT +G +AL L + PD++++D ++ + G+E+ Sbjct: 7 LLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMIESLPGIEVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + + +P+I +TA + D R + G + Y++KP S + + + Sbjct: 67 RRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRR 123 >gi|291568215|dbj|BAI90487.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 394 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++ GY + NG AL+ PD+I++DI + E+ G ++ Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K+D +EIP+I ++A + D+ G YI+KP + + ++ + Sbjct: 73 AKYLKDDPTTREIPIIFLSALSDTMDKVLAFDLGGVDYITKPFHVQEVLARVRTQL 128 >gi|15926996|ref|NP_374529.1| truncated (putative response regulator ArlR [S [Staphylococcus aureus subsp. aureus N315] gi|13701213|dbj|BAB42508.1| truncated (putative response regulator ArlR [S [Staphylococcus aureus subsp. aureus N315] Length = 133 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + + + Y +G + L+ A H D+II+D+ L I+G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ Q P+I +TA + D+ G + YI KP + + I+ + Sbjct: 61 LEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VED++ +L + + T Y + +G+E + + D+I++D+ + + Sbjct: 8 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 67 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E++K I+ S +P+I +TA + D+ + G + YI+KP S + + ++ Sbjct: 68 NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 124 Query: 120 IGEA 123 + + Sbjct: 125 LRRS 128 >gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 203 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+V+D+ + L D +E GY NG +ALE + P++II DI + E+ G + Sbjct: 1 MLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGYTLV 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I+E+S+ IPVI ++A D + G + Y+ KP M ++ + + Sbjct: 61 KLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQ 117 >gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] Length = 231 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IVED+ +L RD +E +G+ +G E L LAR + ++++D+ L ISG Sbjct: 1 MRKILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLPGISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 EI +++++ + +PV+ VTA D+ R G + Y+ KP S S + + +I Sbjct: 61 FEICREVRKS---KNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHI 116 >gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 239 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L ++ G+ +G +ALE+AR+ KP+ I+D+ + + G E Sbjct: 11 KVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMPGMDGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + + PV+ +TA D G + Y++KP SL + ++ + Sbjct: 71 LLGKLRAEGL--DAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 127 >gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I+ED E L +D + +G+ A G ALE + PD +I+DI L E+ Sbjct: 1 MNKRILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEKISPDAVILDIMLPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I + I++ S L P+I +TA + D + G + YI KP S + +K + Sbjct: 61 GLDICRGIRKKSAL---PIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ A G EALE ++ D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ+++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] Length = 240 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED E + + GY + NG LE A+ + D++++D+ L E++ Sbjct: 1 MAATILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPELN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ +PVI +TA D+ G + YI+KP ++ + I++ + Sbjct: 61 GLEVLRRLR---RTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRAL 117 Query: 121 GEA 123 ++ Sbjct: 118 KKS 120 >gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 223 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 + KV+++ED E + + +E +GY L +NG E L+L ++K +I++DI L +IS Sbjct: 1 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+E ++PV+ +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAIL 117 Query: 121 GE 122 Sbjct: 118 SR 119 >gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + +GY L+ +G EA+++ K D++++D+ + + G Sbjct: 5 KILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPRMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ + E+P+I +TA + DE + G + YISKP S I + I+ + Sbjct: 65 EVVREIRK---VSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRR 121 >gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L +D +E GY NG EALE+ Q PD+II D+ + E+ G Sbjct: 20 KRLLLIDDDPNLILLVKDYLEFRGYEVNTAENGREALEILEQDIPDMIICDVMMPEMDGY 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q++++ IPV+ ++A D + G + Y+ KP + ++ + Sbjct: 80 TFVEQVRQNERTGWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 137 >gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 46P47B1] gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 103P14B1] gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 12P80B1] gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC8] gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC1] gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC7] gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis CO72] gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis O35E] gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 101P30B1] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EI 59 M K+++VED +L ++ S + +Q + A KPD+I++D + Sbjct: 1 MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG++ +++K++ +IP+I +TA + ++ G + YI+KP S + +K Sbjct: 61 SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+E + + G+ +G E L PDV+++D L + G Sbjct: 1 MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ E +P++ VTA D + G + Y+ KP+ + I+ + Sbjct: 61 LEVCRRLR-TPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|299145092|ref|ZP_07038160.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298515583|gb|EFI39464.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1330 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDN+ + ++ + Y NG EALE+ ++I D+ + E+ G+E+ Sbjct: 1084 LIVEDNDDFRNFLINCLKDT-YQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMELC 1142 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK D IPVI +TA E K G + YI+KP +L I + I+K + Sbjct: 1143 RKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKIL 1197 >gi|294979306|pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp gi|294979307|pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With C-Di-Gmp Length = 459 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y +G AL +A + PD+I++D+ + + Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++K+D + IPV+ +TA +GD + + G +++KPI + ++ Sbjct: 61 GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+DNE + + + + + +A +++ D++I++ + GL Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T ++ + +++PV+A+ +G + + G +S+PI +K I Sbjct: 213 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271 >gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E + L+ G+ NG +ALE + D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ KQ++ +PVI VTA + D+ + G + YI+KP S + I+ + Sbjct: 61 TEVCKQLRGRGA---VPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED + + ++ +GY +G ++L + + D++I+DI L E++G Sbjct: 1 MKKIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K+I++ + Q +P++ +TA + + G + Y+ KP + +K + Sbjct: 61 LDVCKEIRKTN--QSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|218708873|ref|YP_002416494.1| DNA-binding response regulator [Vibrio splendidus LGP32] gi|218321892|emb|CAV17879.1| DNA-binding response regulator [Vibrio splendidus LGP32] Length = 242 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 ++++V+D++ +L + + SG+ +G+E + Q PD+I++D+ L G Sbjct: 6 RILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 66 TLCQRVRKQS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122 >gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 804 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED++ ++ + +++ Y+ +G LE A + D+I++D+ L ++ G++ Sbjct: 2 KLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGIQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q ++ +L P++ VTA + R G + Y+ KP ++ + ++ + Sbjct: 62 FCQQRRKQGDL--TPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRR 118 Score = 127 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 61/115 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+MIV+D+ +++ R +E G+ ++ + E Q PD++I+D+++ EISG Sbjct: 507 TAKLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISG 566 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++ + ++ D E+PV+ ++A + G + YI KPI S + I Sbjct: 567 IDLCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621 Score = 62.8 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ--EISGLE 63 +IV+++ + + G + N +A +PDVI++D+ +GLE Sbjct: 386 LIVDNDFALAQAIATQAKIWGLKSEIACNLSQAKRAIASFQPDVILLDLFFPDTGENGLE 445 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ + IP I +TA ++ + G ++ KP++ +E I K + Sbjct: 446 LLQE--LSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPERIVEAIVKVV 500 >gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88] gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88] Length = 234 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED+E ++ +E +GY L G E E ++ ++++DI + E+ Sbjct: 1 MKERILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + K I+ ++P++ ++A G + + G + YI+KP SL ++ ++ Sbjct: 61 GLTLCKNIR---LTSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|86146088|ref|ZP_01064414.1| Response regulator [Vibrio sp. MED222] gi|85836035|gb|EAQ54167.1| Response regulator [Vibrio sp. MED222] Length = 242 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 ++++V+D++ +L + + SG+ +G+E + Q PD+I++D+ L G Sbjct: 6 RILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S +P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 66 TLCQRVRKQS---NVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122 >gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I+ED + + GY Q +G + LE+A + D+II+DI L ++G+ Sbjct: 4 KKILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYMNGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I+ +SE +P+I +TA D+ G YI+KP ++ + I+ + Sbjct: 64 EVLRKIRHNSE---VPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSAL 118 >gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++D + ++ GY +G L +AR KPD+II+D+ L + G+ Sbjct: 12 AKILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVMLPGMDGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++ +S + VI +TA + + D+ G + Y++KP S M IK + Sbjct: 72 ELLAHLRRES---NVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRR 128 >gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 854 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 67/115 (58%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +DN +L + G+ + R+G+EA+ +A PD+I+MD+Q+ ++ GL T Sbjct: 738 LLADDNTDTRELLSHYLTQKGFRVITARHGLEAVRMANTEHPDLILMDVQMPQLDGLAAT 797 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+E L +P+IA+TA M GD ER G Y++KP+ LS ++ I ++ Sbjct: 798 RLIREMPALHNVPIIALTALVMPGDRERCLAAGANDYLTKPVPLSQLLKLIHFHL 852 Score = 68.6 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED++ +L + + G +G EA++ ++++D +L +++ EI Sbjct: 22 LVVEDDQGLNRLIQRHLRRHGLHVEGVLSGAEAIQRTATLTDPLLLLDYRLPDMTAKEIV 81 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ P I +T + + K G Y++K Sbjct: 82 LTLQHQQRPA--PFIVMTGNGDERIAVEMMKLGARDYLTK 119 >gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 248 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++V+D +L + +G+ G +A+ ++ PD++++D+ L + G Sbjct: 10 TAKILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDFDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E +IPV+ +TA D+ + G + Y++KP SL + I+ + Sbjct: 70 YEVLRRMREQG--SDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067] gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D++ +L + G+ L+ +G A ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ + EIPVI +TA D+ R + G + Y++KP + I+ + Sbjct: 61 FELCQKIR--TSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 304 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E G+ + +G EA+ + +PD+I++D+ L ++ Sbjct: 79 MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMN 138 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G++I K I+ S +P++ +TA D + G + Y++KP Sbjct: 139 GIDICKTIRRSSP---VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 186 >gi|149191185|ref|ZP_01869443.1| DNA-binding response regulator GltR [Vibrio shilonii AK1] gi|148835023|gb|EDL52002.1| DNA-binding response regulator GltR [Vibrio shilonii AK1] Length = 242 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEISGL 62 +++V+D+E L + + SG+ +G+E L + + PD+I++D+ L G Sbjct: 6 HILVVDDDEEIRLLLDEYLTKSGFQVSTAEDGVEMELFIKAKGYPDLILLDVMLPGDDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ DS+ +P+I +TA + + D+ + G + YI+KP S M IK + Sbjct: 66 TLCQRVRRDSQ---VPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122 >gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+E + + ++ YI +G A E D+I++DI L ++ G+ Sbjct: 2 KILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + P++ +TA D + G + Y+ KP L ++ + Sbjct: 62 LCQQLRANG--CKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRR 118 >gi|304309736|ref|YP_003809334.1| predicted histidine kinase [gamma proteobacterium HdN1] gi|301795469|emb|CBL43667.1| predicted histidine kinase [gamma proteobacterium HdN1] Length = 658 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 +++VEDN++N + ++ G NG E ++ + D+I+MD Q+ Sbjct: 512 HILVVEDNKVNQMVINGYLKKMGCSVEVANNGQEGVDRLGDTTTNRPSFDLILMDCQMPV 571 Query: 59 ISGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G E T++I+ + L +P+IAVTA AM+GD ER + G Y+SKPI L + I Sbjct: 572 MDGFEATRRIRALPNPALAALPIIAVTANAMEGDRERCLQAGMNDYLSKPIDLPVLRSMI 631 >gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L + Y + + +EAL+ + K D+ I+D+ + + Sbjct: 1 MSTNILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+E PVI +TA + D+ G + YI+KP S + +K + Sbjct: 61 GFKLCQKIREKYNF---PVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED E +L +ET Y + +G L L+ + D+II+D+ L I Sbjct: 1 MAENILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I ++++ L P++ +TA + D + G + Y++KP S+ ++ + Sbjct: 61 GLQICQKLRSAGVL--TPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|171058133|ref|YP_001790482.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170775578|gb|ACB33717.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 945 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN++N ++ + L+E G++ +G EA+ H +++MD+Q+ + GLE Sbjct: 819 RLLVVEDNDINREVAQALLEEVGFVVDLAEDGAEAVAKVASHPYRLVLMDMQMPRMDGLE 878 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++I+ Q +P+IA+TA A D R G + ++SKP+ + ++ Sbjct: 879 ASQEIRRTRTTQNLPIIAMTANAFSEDRARCLAAGMDDFVSKPVDPEALYAVLLGWL 935 >gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 254 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 94 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 >gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L RD +E SG+ G L+ A + D+II+D+ L E+ G Sbjct: 1 MSKILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I +Q++E ++ P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FDICRQVRE---IKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLD 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED E +++ + + + L+ N A ++++ D+I++D L + Sbjct: 1 MNKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G++ K+I+ +S EIPV+ +TA + ++ G + Y++KP S + IK Sbjct: 61 DGIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAI 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630] gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13 [Clostridium difficile] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D++ L ++ + + +G L+ ++ +II+DI L ++G Sbjct: 1 MYKILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +I++ L +PV+ +TA + D+ + G + Y++KP ++ F+ ++ I Sbjct: 61 YDVLTEIRK---LNNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|58581182|ref|YP_200198.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425776|gb|AAW74813.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 777 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++VED+ + + + G+ +G A++L RQ PD++++D+ L ++SG+ Sbjct: 552 KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 611 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I+ + PVI VTA + ++ + G + Y+ KP S + + + Sbjct: 612 EVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 668 Query: 123 A 123 + Sbjct: 669 S 669 >gi|260062752|ref|YP_003195832.1| putative two-component system sensor kinase/response regulator fusion protein [Robiginitalea biformata HTCC2501] gi|88784320|gb|EAR15490.1| putative two-component system sensor kinase/response regulator fusion protein [Robiginitalea biformata HTCC2501] Length = 941 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + D + + Y L R+G E L+LA PD++I D+ + + G+E+ Sbjct: 696 VLLVEDNPDMRQFICDGLIDA-YRTLTARDGEEGLKLAISRNPDLVITDLMMPRMDGVEM 754 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+++K E IPV+ +TA A ++ + G + Y++KP + I + Sbjct: 755 TEKLKTRIETSHIPVVMLTARAGMENKLEGLETGADDYLTKPFDTRELRVRVANLIRQ 812 >gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4] gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED + L+ G+ +G ALE D++++D+ L +SG Sbjct: 1 MTRVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKRLR---MTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 922 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +K++IV+D+ N+ ++E G L NG E + R++ D+++MDI + E+ G Sbjct: 802 RKILIVDDDLRNVFSLTVVLEKHGVKVLFAENGKEGINALRENPDIDLVLMDIMMPEMDG 861 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I++ E + +PVIA+TA AMK D E+ G YISKP+++ + I+ ++ Sbjct: 862 YEAMQTIRQIHEYETLPVIALTAKAMKNDREKCIDAGASDYISKPVNVEQLLSLIQVWL 920 >gi|221235483|ref|YP_002517920.1| response regulator receiver protein divK [Caulobacter crescentus NA1000] gi|1086465|gb|AAA82214.1| cell division response regulator DivK [Caulobacter crescentus CB15] gi|220964656|gb|ACL96012.1| response regulator receiver protein divK [Caulobacter crescentus NA1000] Length = 125 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 86/122 (70%), Positives = 103/122 (84%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+E GY LQTR G+ AL +AR++KPD+I+MDIQL EIS Sbjct: 1 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED +L IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK+ + Sbjct: 61 GLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 120 Query: 121 GE 122 Sbjct: 121 ER 122 >gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ D +E SGY + +G EAL + ++ PD+I+ DI + +++ Sbjct: 1 MPLTILVVDDDLGTRLSVSDYLELSGYSVITANDGQEALFMVDEYNPDLIVTDIIMPQMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ + + +PVI +TA + + GC+ Y+ KP L I+ + Sbjct: 61 GYELVRRVRQQAMFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120 Query: 121 GEA 123 + Sbjct: 121 ERS 123 >gi|309791482|ref|ZP_07685986.1| two-component response regulator [Oscillochloris trichoides DG6] gi|308226479|gb|EFO80203.1| two-component response regulator [Oscillochloris trichoides DG6] Length = 121 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 70/119 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE+N + ++ GY + +G + + +A+ PD+I+MD+ L + G Sbjct: 1 MSKILLVEDNEMNRDMLSRRLQRKGYEVVIATDGEQGVAMAQSELPDLILMDMSLPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ IK + +P+IA+TA AM GD+E+ GC+ Y +KP+ L + I+ + Sbjct: 61 WQATRMIKAQPTIASVPIIALTAHAMAGDQEKCFAAGCDDYDTKPVDLPRLLAKIEALL 119 >gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 68 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|209522684|ref|ZP_03271242.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496733|gb|EDZ97030.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 398 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++ GY + NG AL+ PD+I++DI + E+ G ++ Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K+D +EIP+I ++A + D+ G YI+KP + + ++ + Sbjct: 73 AKYLKDDPTTREIPIIFLSALSDTMDKVLAFDVGGVDYITKPFHVQEVLARVRTQL 128 >gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] Length = 239 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + KV++V+D+ L + G++ NG +A L + ++++D+ L Sbjct: 1 MSQQYKVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL I ++++E +IPV+ +TA + D + G + Y+ KP + + I+ Sbjct: 61 EDGLSICRRLREAGN--QIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRA 118 Query: 119 YIGE 122 + Sbjct: 119 VLRR 122 >gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D L + G+ NG +A ++A++ +PDV+I+D+ L GLE+ Sbjct: 18 VLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYDGLEV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ +++P+I +TA D G + Y++KP + M + + Sbjct: 78 TRRLRRS---RDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRR 132 >gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D R + GY NG ALELAR +PDV+I+DI L ++GL Sbjct: 9 AHILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIMLPGMNGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + + + ++ +TA D + G + Y+ KP +L + +K + Sbjct: 69 EVCRCLHQTQATPA--ILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRR 126 >gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] Length = 240 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++++ED + K+ + +E Y Q +G E LE+ D++++D+ + +I Sbjct: 4 MNKIKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMIPKI 63 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ K+I+ S +PVI VTA + D K G + Y++KP S M+ IK Sbjct: 64 SGEDLIKEIRNKS---NVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|75759827|ref|ZP_00739903.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492685|gb|EAO55825.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++L + GY ++ +G+EAL+L Q + D+I++D+ + + G Sbjct: 5 MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPSMDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + QI++ + +P+I +TA D + G + YI+KP + + I+ + Sbjct: 65 WDTCYQIRQ---ISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 225 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I+ED R + G+ +G + LE AR+ D++++D+ L I Sbjct: 1 MQQRILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ ++P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 61 GIEVARRLRA---ASDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|255024504|ref|ZP_05296490.1| two-component response phosphate regulator [Listeria monocytogenes FSL J1-208] Length = 169 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G Sbjct: 1 MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 61 IEVTKKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|254418761|ref|ZP_05032485.1| hypothetical protein BBAL3_1071 [Brevundimonas sp. BAL3] gi|196184938|gb|EDX79914.1| hypothetical protein BBAL3_1071 [Brevundimonas sp. BAL3] Length = 122 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 87/121 (71%), Positives = 105/121 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+++ GY LQTR G++AL LAR H PD+I+MDIQL EIS Sbjct: 2 MSKKVLIVEDNELNMKLFHDLLDSQGYETLQTREGLQALALARAHHPDLILMDIQLPEIS 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETI++++ Sbjct: 62 GLEVTKWLKDDEELNHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVMHFLETIRQHL 121 Query: 121 G 121 G Sbjct: 122 G 122 >gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes] gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes] gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes] gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes] gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes] gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes] gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes] gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes] gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes] gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes] gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes] gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes] gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes] gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes] gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes] gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes] gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes] gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes] gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes] gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis] gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + L ++ GY + NG++AL+ K D+ I+D+ L ++ Sbjct: 1 MNEKILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA D+ G + YI+KP + +K + Sbjct: 61 GFHICQKIRERYFY---PIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|330983029|gb|EGH81132.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 124 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN + D + GY ++G+ L LA D+I++DI L I G Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ED+ ++ PVI +TA D + + G + Y+ KP +LS I+ + A Sbjct: 62 LCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120 >gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D +KL + GY L +G+EALE+ + HK D+II+D+ + ++ G++ Sbjct: 5 TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVMMPQMDGIQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E++ P+I ++A + + D+ G + Y++KP S + IK + Sbjct: 65 ACMKIREEN---NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRR 120 >gi|330501096|ref|YP_004377965.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328915382|gb|AEB56213.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1160 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +++++V+D+ N+ +E G RNG EAL R+H D+++MD+ + E+ G Sbjct: 1036 RRLLLVDDDVRNIFALSSALEQKGASVEVARNGHEALAKLREHDDIDLVLMDVMMPEMDG 1095 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+QI+ + + +P+IAVTA AMK D+ER R+ G Y++KPI L I+ ++ Sbjct: 1096 YEATRQIRLEERWKNLPIIAVTAKAMKDDQERCRQVGANDYLAKPIDLDRLFSLIRVWMP 1155 Query: 122 E 122 + Sbjct: 1156 K 1156 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED ++ DL GY L E LELARQ++PD I++D++L + SGL Sbjct: 768 RRVLVVEDEVRFARILFDLAHELGYACLVATCADEGLELARQYRPDAILLDMRLPDGSGL 827 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + +++K+D++ + IPV V+ G Y KP S E Sbjct: 828 SVLQRLKDDAQTRHIPVHVVSVEDQSE---AALHLGAVGYALKPTSRDQLKEV 877 Score = 77.5 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 43/91 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED+ L LI EALE R D +I+D++L ++ G Sbjct: 890 KRVLLVEDDPLQRDSVARLIGDEDIEITAVALAGEALEKLRTTVFDCMIIDLKLPDMQGN 949 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ +++ E+ PVI T + DEE Sbjct: 950 ELLRRMAEEDICSFPPVIVYTGRNLTRDEEA 980 >gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + + L + +G+ ++ NG++ L LA++ KP ++++D+ L + G E Sbjct: 5 TILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLMLPGLEGQE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K+ + + IPV+ +TA A + D + G + Y++KP S + ++ + Sbjct: 65 VCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR 123 >gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 64/110 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ + +E G+ + NG EAL R+ KPD++++D L +SG+EI Sbjct: 9 VLVVEDESAQREVLQYNLEAEGFRVVMAVNGDEALLFLREEKPDLVVLDWMLPNVSGIEI 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 +++K + E + IP+I ++A + + D R + G + Y+ KP S+ M Sbjct: 69 CRRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMA 118 >gi|239908139|ref|YP_002954880.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798005|dbj|BAH76994.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 807 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 71/116 (61%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ R+ +E+ G NG EA+E+ R DV++MD+Q+ + GL Sbjct: 315 VLLVEDNAINQQVARETLESLGAAVDVAINGREAVEMVRSSLYDVVLMDVQMPVMDGLAA 374 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ E+P++A+TA A+ D ER + G Y++KP+ + + ++ ++I Sbjct: 375 TRAIRQLPGTAELPIVALTAHALAEDRERCLEAGMNDYLTKPLEVDRLLASLGQWI 430 Score = 115 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 12/126 (9%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-----DVIIMDIQLQE 58 +V++V+D +LN +F ++ + G+ + NG +A KP D+I+MDI++ E Sbjct: 586 RVLLVDDAKLNRAIFSQILRSGGHEVVTAENGKDACRRLFGQKPDGRPFDLILMDIEMPE 645 Query: 59 ISGLEITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + G + I+ +P++A+T+ K + R + G +A + K Sbjct: 646 MDGPTAARTIRRLLAASVAPPCAPGVPIVALTSHDCKDEAARCLEAGMDACLHKVFEQGE 705 Query: 112 FMETIK 117 + ++ Sbjct: 706 LLAILQ 711 >gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS] gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS] Length = 233 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 66/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED +L ++++G++ + +G EA ++ +PDV+++D L ++SG+ + Sbjct: 8 ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E E++ +PVI +TA ++ D+ G + YI+KP S + I + Sbjct: 68 LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125 >gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 232 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D ++L + G+ NG E L+ AR +PD +I+D+ + + G Sbjct: 8 RVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMPGMDGFG 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ D + PV+ +TA D+ G + Y++KP SL + ++ + A Sbjct: 68 MLRRLRADGV--DAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA 125 >gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 239 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 MI +DN+ + + + + G+ + +G A+ + ++ P +I++D+ + + G E+ Sbjct: 1 MIADDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMFNEYSPLLILLDVMMPKKDGFEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +P+I VTA D G + YI KP S M I+ + Sbjct: 61 QEIRK---TSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRR 114 >gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + + GY + N E L + +++ ++++DI + + GL++ Sbjct: 7 ILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKNQIHLVLLDIMMPGMDGLQM 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E IP+I ++A + D+ G + Y++KP + +K + Sbjct: 67 CKKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRR 121 >gi|299535842|ref|ZP_07049163.1| KDP operon transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729042|gb|EFI69596.1| KDP operon transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 235 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ L + + T+ Y R+G AL+ A KPDV I+D+ L +I Sbjct: 1 MSKRILVVEDDVAIANLIKMTLATNHYEFDIARDGNSALQKALTIKPDVFILDLGLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P+I V+A + D+ G + Y++KP S+ + I+ + Sbjct: 61 GVELITKIRS---WNQTPIIVVSARGEEHDKINALDAGADDYVTKPFSVEELLARIRVAL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED+ +L RD ++ +G+ A ++G++ L+ A DVII+D+ L G Sbjct: 1 MKRILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++I+E ++PV+ V+A ++ R + G + Y++KP S + IK +I Sbjct: 61 YEIIREIREKL---DVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] Length = 236 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D + I GY +G EALE+ R++ +I+D+ L ++G Sbjct: 7 KNVLIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRKYPIMFVILDLMLPGMTGE 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + I+ S +PVI +TA + D G + Y++KP S+ ++ + Sbjct: 67 EICQAIRRQSR---VPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRR 123 >gi|170703741|ref|ZP_02894459.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170131352|gb|EDS99961.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 241 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + RD +E GY L +G +L + KPD+I++DI + + G+++ Sbjct: 5 ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLLNR-KPDLILLDIMMPGLDGIQV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+ + P++ ++A D G + YI+KP SL + + ++ Sbjct: 64 CRWIR---DSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRR 118 >gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1342 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE +L L Y + ++G E E ++ +PD+++ DI + ++SG+E Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1150 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK + E IPVI +TA + + K G + YI+KP ++ + Sbjct: 1151 MCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1207 >gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1333 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE +L L Y + ++G E E ++ +PD+++ DI + ++SG+E Sbjct: 1083 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1141 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK + E IPVI +TA + + K G + YI+KP ++ + Sbjct: 1142 MCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1198 >gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] Length = 238 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED++ L R ++ GY + +G +AL + D +I+D+ L + Sbjct: 1 MAKTILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI ++I++ + +PVI ++A + + G + Y++KP SL + +K Sbjct: 61 GLEICRRIRQM--TRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1342 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE +L L Y + ++G E E ++ +PD+++ DI + ++SG+E Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1150 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK + E IPVI +TA + + K G + YI+KP ++ + Sbjct: 1151 MCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLV 1207 >gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 229 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + +D E GY + NG EA+E + D+I++DI + I Sbjct: 1 MQEKILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I+ + P+I ++A + D+ + G + YI KP S+ ++ ++ Sbjct: 60 GFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1231 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K++M+V+D+ N+ ++ G L+ NG ALEL + D+I+MD+ + E+ G Sbjct: 1111 KRIMLVDDDMRNVFALSKILSEKGMEVLKAENGNNALELLSKSENVDMILMDVMMPEMDG 1170 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T++I+ + + ++ +IA+TA AM D ++ G YISKP+ + ++ ++ Sbjct: 1171 YEATRRIRSNLKYKDTVIIALTAKAMNDDRQKCIDAGANDYISKPVDVERLFSLMRVWLS 1230 Query: 122 E 122 Sbjct: 1231 R 1231 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 4 KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++ IVED+ + G+ + G + L LAR+HKP I++D+ L + G Sbjct: 843 KILLIVEDDLKFASILLKQANEKGFRGISAATGEDGLVLARKHKPHAILLDLDLPGMDGH 902 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 + ++K D ++ IPV ++A ++ + G YI KP++ I+ + Sbjct: 903 AVLNELKADQSVRHIPVHIISAK---EYSLKLIRDGAVEYIKKPVNKKQLDEAFNRIEHF 959 Query: 120 IGE 122 I Sbjct: 960 ISR 962 Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 50/92 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ + R LI + +G EAL + ++ D I++DI L ++SG Sbjct: 964 MKNLLIIEDDANSRSTTRKLIGNDDVKCFEASSGKEALSVYSENHFDCIVLDIGLPDMSG 1023 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ +++++ E Q P+I T + +E + Sbjct: 1024 FDLIREMEKIKEKQIPPIIIYTGRELTKEESK 1055 >gi|115359360|ref|YP_776498.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|170698563|ref|ZP_02889632.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171317335|ref|ZP_02906530.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172064153|ref|YP_001811804.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284648|gb|ABI90164.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|170136497|gb|EDT04756.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171097476|gb|EDT42315.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171996670|gb|ACB67588.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 246 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E + PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLEDGAPDLIVLDLMLPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp. Tu6071] Length = 2013 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E +G L NG E +E+ QH V++MDI + E+ G Sbjct: 1893 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1952 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + ++K++ Sbjct: 1953 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 2011 >gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11] gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp. D11] gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp. D11] Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + ++ + + +G EALE D+II+DI L +++G E Sbjct: 2 KILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ + E PV+ +TA D+ + G + Y+ KP + I+ + Sbjct: 62 VVKNLRTNKN--ETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118 >gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] Length = 223 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++IVED+ L R+ ++ GY +GMEA+ L D+I++DI L +I G Sbjct: 1 MQHILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ S+ +P+I +TA + ++ R + YI+KP S+ I + I + Sbjct: 61 FTVCELIRKQSQ---VPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 301 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+I++D N+ + D++ +G+ +G ALE KPD+I++D+ + + Sbjct: 1 MTKTVLIIDDVPANVGVLLDVLAAAGFEVAVAESGQSALEQLAWLKPDIILLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +++K ++PV+ +TA D+ + G Y++KP+ + + ++ Sbjct: 61 GFETCRRLKAREATADVPVLFMTALTEVVDKVKGFAAGAVDYLAKPLHPEEVLARVNAHL 120 >gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + GY + NG EAL+ R + ++I+MDI + ++ Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G K IK+ L IP+I +TA + D+ + GC+ YI+KP L + + Sbjct: 61 GFGAIKGIKK---LTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|17231163|ref|NP_487711.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132804|dbj|BAB75370.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 407 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ N+ L + ++E GY NG+ AL + D++++D+ + + G E Sbjct: 24 KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDGYE 83 Query: 64 ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++++ + +L + IP++ +TA + G + +I KP+++ + ++ + Sbjct: 84 VTRRVRGEMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 141 >gi|302871492|ref|YP_003840128.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574351|gb|ADL42142.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 234 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V +V+D + ++L + + GY +G L + +PD++I+DI L +I G E Sbjct: 5 TVYVVDDEKDILELVSEYLTQKGYAVRTFESGESFLGEFEKSEPDIVILDIMLPDIDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+I+++S ++P+I ++A + D+ + G + YISKP SLS IKK + Sbjct: 65 ICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120 >gi|254883001|ref|ZP_05255711.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319641845|ref|ZP_07996522.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_40A] gi|254835794|gb|EET16103.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317386518|gb|EFV67420.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_40A] Length = 1319 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN+ + R L+ Y NG EAL+L + PD++I D+ + + G+E Sbjct: 1069 HILVVDDNQDLLNYLRMLLAPR-YQITCASNGKEALDLLSELMPDLVISDVMMPVMDGME 1127 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ +PV+ +TA GD + G + Y++KP S I I + Sbjct: 1128 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLL 1184 >gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + L + +G+ +G L AR PD++++D+ L +ISG Sbjct: 1 MARILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K D L+ PV+ V+A + D + + G + Y+ KP S+ M +K + Sbjct: 61 HEVLRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium 2_1_46FAA] Length = 241 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 7/126 (5%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M+K V++VED+E L +E Y NG +A+ LA + PD+I+MD+ L Sbjct: 1 MMKGTKPNVLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGL 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++ G+E+ ++I+ +P+I ++A + + D+ G + Y++KP S+ + Sbjct: 61 PDMDGIEVIRKIRS---WSVVPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARL 117 Query: 117 KKYIGE 122 + I Sbjct: 118 RATIRR 123 >gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IVED+ + +L++ G + T NG+EAL L D++++D+ L + GLE Sbjct: 2 KVLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNLPGLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ Q + V+ +TA D + G + Y+ KP ++ I+ + A Sbjct: 62 VCRRLRRMPGNQPL-VLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRA 120 >gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 217 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED E K+ + +E G+ + +G EA+E + V+I+D+ L + G Sbjct: 2 KILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + PVI +TA D+ + G + Y+ KP+S + +K + Sbjct: 62 VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117 >gi|307727152|ref|YP_003910365.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587677|gb|ADN61074.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 246 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E +G NG + Q PD+I++D+ + GL Sbjct: 6 HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGTPDLIVLDLMMPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +PV+ +TA + D + G + Y+ KP ++ + I+ + A Sbjct: 66 LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 >gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response regulator domains) protein [Fulvimarina pelagi HTCC2506] Length = 454 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D+ +N+KL + + +Q NG EAL + R D+++ D+ + E+ Sbjct: 1 MSGRILIVDDSAINLKLLEARLTAEYFDVVQASNGEEALAICRSEPLDLVLSDVMMPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +K D +PV+ +TA D R + G + +++KP+ ++ Sbjct: 61 GFELCRALKSDPRTTHLPVVLITALDQPSDRVRGLEAGADDFLTKPVRDLPLFSRVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 48/121 (39%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG--- 61 +++V D+ ++T G + + A ++ + V++ + L +G Sbjct: 156 IVVVSDHARLQARIARSLQTIG-SVREFADYDTAFAAVQKRQ--VMLTVVDLVGGNGTDP 212 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + + + +P+IA+TA + + G Y+ +P+ + + + + Sbjct: 213 IRFLARCRASEKSRGMPIIAITAADDDRTAAKALEIGAYDYVQRPVDCNELVARSRTQLA 272 Query: 122 E 122 Sbjct: 273 R 273 >gi|6513589|gb|AAF14690.1|AF051940_1 response regulator [Brucella abortus] Length = 123 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 91/123 (73%), Positives = 109/123 (88%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLFRDLIE SGY ++TR+G+EAL+LAR+H PD+I+MDIQL E+S Sbjct: 1 MTKSVMIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL+ IPVIAVTAFAMKGDE RIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKDDEELRHIPVIAVTAFAMKGDERRIRQGGCEAYISKPISVPRFIETIKSYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|226943663|ref|YP_002798736.1| membrane sensor hybrid histidine protein kinase [Azotobacter vinelandii DJ] gi|226718590|gb|ACO77761.1| membrane sensor hybrid histidine protein kinase [Azotobacter vinelandii DJ] Length = 772 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N + + ++ GY +G EAL D+I+MD + + G Sbjct: 648 RQVLLVEDNPVNQMVAKGMLAKLGYEVAIAPHGAEALSYLEHGPVDLILMDCNMPVMDGY 707 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++I++D E+P+IA+TA + + ER R G Y++KP+ + ++ Sbjct: 708 ETSRRIRQDGRWSELPIIALTANVLPEERERCRTAGMNDYLAKPLRREDLANMLHTWL 765 >gi|330997764|ref|ZP_08321599.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569652|gb|EGG51417.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1320 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+ GY + NG E A++ PD+I+ DI + E+ G+ + Sbjct: 1070 VLVVEDNDDIRDYVASSF-DEGYRVVTAMNGREGWREAQRLVPDIIVSDIMMPEMDGIGL 1128 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++KED IPVI +TA D+E G ++Y++KP S ++ ++ + Sbjct: 1129 CRRVKEDVRTSHIPVILLTAKDSIRDKEEGYDSGADSYLTKPFSATLLNSRVRNLL 1184 >gi|329957277|ref|ZP_08297797.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522990|gb|EGF50093.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1363 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ + + L+ NG EALE + ++ D+II D+ + + G++ Sbjct: 1114 TILIVEDNQEIRHYLSSGLAGL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1172 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K IK++ IPVI ++A D+ + G + YISKP ++++ I+ + Sbjct: 1173 LCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFAITVLTSKIQNMMR 1230 >gi|296156476|ref|ZP_06839314.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295893075|gb|EFG72855.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 246 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E +G NG + Q PD+I++D+ + GL Sbjct: 6 HVLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +PV+ +TA + D + G + Y+ KP ++ + I+ + A Sbjct: 66 LCRELRA-GKFRSVPVVMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 >gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED + K ++++ GY + +G LE D+II+DI L EI+G Sbjct: 1 MAKILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K I+E+ L PV+ ++A D + G + Y+SKP S++ + +K + Sbjct: 61 YNILKHIRENKIL--TPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|295690170|ref|YP_003593863.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] gi|295432073|gb|ADG11245.1| response regulator receiver protein [Caulobacter segnis ATCC 21756] Length = 125 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 87/122 (71%), Positives = 102/122 (83%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+E GY LQTR G+ AL +AR +KPD+I+MDIQL EIS Sbjct: 1 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARDNKPDLILMDIQLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK+ + Sbjct: 61 GLEVTKWLKEDEELAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 120 Query: 121 GE 122 Sbjct: 121 ER 122 >gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 224 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D+ +L +E G+ + +G++AL + K D++I+DI + + G Sbjct: 1 MPKILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKIAEVKIDMVILDIMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++ +IP++ +TA + + + G + Y+ KP + +K + Sbjct: 61 WELCYELR---RYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169829139|ref|YP_001699297.1| KDP operon transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168993627|gb|ACA41167.1| KDP operon transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 234 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ L + + T Y ++G AL+ A KPDV I+D+ L +I Sbjct: 1 MNKRILVVEDDVAIANLIKMTLATQHYEFDIAQDGNSALQKAITMKPDVYILDLGLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P+I V+A + D+ G + Y++KP S+ + I+ + Sbjct: 61 GVELITKIRS---WTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVAL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 312 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ D ++ GY+ + +G +AL+ + PDV+++D + ++ G E Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +IK+D + +PVI +TA + G Y++KP+ I ++ + Sbjct: 62 CLRIKKDGRHEHLPVIFMTALTESEHVVHGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120 >gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1252 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K++M+V+D+ N+ ++ G L+ NG ALEL + D+I+MD+ + E+ G Sbjct: 1132 KRIMLVDDDMRNVFALSKILSEKGMEVLKAENGNNALELLSKSENVDMILMDVMMPEMDG 1191 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T++I+ + + ++ +IA+TA AM D ++ G YISKP+ + ++ ++ Sbjct: 1192 YEATRRIRSNLKYKDTVIIALTAKAMNDDRQKCIDAGANDYISKPVDVERLFSLMRVWLS 1251 Query: 122 E 122 Sbjct: 1252 R 1252 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 4 KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++ IVED+ + G+ + G + L LAR+HKP I++D+ L + G Sbjct: 864 KILLIVEDDLKFASILLKQANEKGFRGISAATGEDGLVLARKHKPHAILLDLDLPGMDGH 923 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 + ++K D ++ IPV ++A ++ + G YI KP++ I+ + Sbjct: 924 AVLNELKADQSVRHIPVHIISAK---EYSLKLIRDGAVEYIKKPVNKKQLDEAFNRIEHF 980 Query: 120 IGE 122 I Sbjct: 981 ISR 983 Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 50/92 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ + R LI + +G EAL + ++ D I++DI L ++SG Sbjct: 985 MKNLLIIEDDANSRSTTRKLIGNDDVKCFEASSGKEALSVYSENHFDCIVLDIGLPDMSG 1044 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ +++++ E Q P+I T + +E + Sbjct: 1045 FDLIREMEKIKEKQIPPIIIYTGRELTKEESK 1076 >gi|77919324|ref|YP_357139.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545407|gb|ABA88969.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 227 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E ++ D + G+ +NG+ L LA + D+II+DI L + GL Sbjct: 2 RILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVTLEFDLIILDIMLPGMDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++++ +Q PVI +TA D+ K G + Y+ KP SL ++ + + Sbjct: 62 LCRKLRKEAGVQ-TPVIFLTARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRRS 120 >gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 239 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60 ++K++++ED E R ++ +G+ A++ +G EALE Q P V ++D+ L I Sbjct: 1 MQKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +KE + +I +TA + D+ G + Y+ KP S + I I Sbjct: 61 GFEVCRILKE--RYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALI 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|294777730|ref|ZP_06743178.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448409|gb|EFG16961.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1350 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + + + Y L++ NG EALE PD++I D+ + E+ GL Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK++ L IPVI +TA + D + G +AY++KP + I +T I Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207 >gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 233 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 +K+++I ED + + ++ +GY + G +AL+ DV+++DI + I Sbjct: 1 MKRILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+I+E S I +I +TA + D+ G + YI+KP S S + Sbjct: 61 DGFTVCKKIREKSST--IGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAI 118 Query: 120 IGE 122 Sbjct: 119 YRR 121 >gi|265752154|ref|ZP_06087947.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236946|gb|EEZ22416.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1349 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + + + Y L++ NG EALE PD++I D+ + E+ GL Sbjct: 1090 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1148 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK++ L IPVI +TA + D + G +AY++KP + I +T I Sbjct: 1149 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1206 >gi|237726641|ref|ZP_04557122.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435167|gb|EEO45244.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1350 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + + + Y L++ NG EALE PD++I D+ + E+ GL Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK++ L IPVI +TA + D + G +AY++KP + I +T I Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207 >gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G E L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM 18228] Length = 228 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED E L + +E +GY +G L L +QH ++I D+ L ++ G Sbjct: 1 MNTILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHTFQLVISDVILPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + +P++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELCKEIRKIN--PSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1954 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++E NG E ++ + D+++MDI + E+ G Sbjct: 1834 KKVLIVDDDMRNIFALTSILEQQQMQVYYAENGREGIQKLQSEPEIDIVLMDIMMPEMDG 1893 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ ++P++A+TA AM+GD E+ G YI+KPI ++ ++ Sbjct: 1894 YDTMRAIRQQPHFAQLPIVAITAKAMQGDREKCLAAGASDYIAKPIETEQLFSLLRVWLA 1953 Query: 122 E 122 + Sbjct: 1954 Q 1954 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ +L G+ AL G L LA+++ P I++DI L + G + Sbjct: 1569 LIIEDDPNFARILVNLARQQGFKALVALRGNTGLALAQKYHPSAIMLDIFLPGLDGWTVL 1628 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++K + E + IPV ++ + +R K G AY+ KPI+ + + + Sbjct: 1629 DRLKHNPETRHIPVHILSIN---EERQRSLKQGAIAYLQKPIASEDLLNALSRL 1679 Score = 78.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 46/86 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+ +EL DL+ + +G ALE D +++++ L +++GL + Sbjct: 1691 LIVDADELQRLSLMDLLAGNDLEIETVSSGTAALERLESKHFDCLVLNLVLPDMNGLALI 1750 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDE 91 ++++++S+ Q +P++ T + +E Sbjct: 1751 ERLRQESQQQHLPIVIYTGQGLTVEE 1776 >gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 254 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 94 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 >gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905] gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905] Length = 230 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V++ +D++ ++ GY ++ +G++A++ ++ +II+DI + + Sbjct: 1 MTKLTVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEVHLIILDIMMPNM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ T +I+ + + IP+I ++A A GD+ G + Y++KP + +K Sbjct: 61 DGITATFKIRAE---RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius UCC118] gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius UCC118] gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741] Length = 233 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D + L + +E +GY NG +AL+ K D II+D+ L I G Sbjct: 1 MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EITK+I+++ ++ +TA + D+ + G + Y++KP S + +K Sbjct: 61 IEITKRIRQEKIT--TYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|20091276|ref|NP_617351.1| response regulator receiver [Methanosarcina acetivorans C2A] gi|19916399|gb|AAM05831.1| response regulator receiver [Methanosarcina acetivorans C2A] Length = 292 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 66/118 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + N++L + Y + G EA + ++ KPD+I++D+ + E++G E Sbjct: 16 KVLIVDDKKENVELMEAYLAVEPYDVITAYGGKEAFQKVKEEKPDIILLDVMMPEVNGYE 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K + E Q IPV+ +TA + D R + G + +++KPI+ +K + Sbjct: 76 VCKILKGNPETQFIPVLMLTALSELEDRIRGIEVGADDFLTKPINRLELKTRVKSLLR 133 >gi|331243018|ref|XP_003334153.1| transcriptional activator protein copR [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313143|gb|EFP89734.1| transcriptional activator protein copR [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 2152 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I +DN + ++ Y ++ +G +A +LA+ ++PD+++ D+ + + G E Sbjct: 1378 TVLIADDNSDMRAFLKSVLSRY-YNVVEAVDGQQAYQLAKLNRPDILVSDVMMPGMDGFE 1436 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K DS+ + VI ++A A G + Y+ KP + + ++ Sbjct: 1437 LLRRLKADSDTAGMSVILLSARAGSESRIEGLAEGADDYLVKPFEAKELVARVNTHL 1493 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 12/129 (9%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--------KPDVIIMDIQ 55 V++VEDN +N+K+ + + GY+ +G EAL D+++MDIQ Sbjct: 2016 HVLVVEDNTINVKVIKRQLTLKGYMVSVAMDGREALNRLYADASETSELPPIDIVLMDIQ 2075 Query: 56 LQEISGLEITKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + ++GLE ++ + EI PVIAVT A K E+ G ++ KP + Sbjct: 2076 MPVMNGLEAITHLRAAEKTGEIKKRYPVIAVTGNARKEQTEQCLASGFDSICVKPYKIDD 2135 Query: 112 FMETIKKYI 120 ++ + Sbjct: 2136 VQSRMEALL 2144 >gi|309791249|ref|ZP_07685780.1| response regulator receiver modulated diguanylate cyclase [Oscillochloris trichoides DG6] gi|308226675|gb|EFO80372.1| response regulator receiver modulated diguanylate cyclase [Oscillochloris trichoides DG6] Length = 321 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I +D+E ++ L+ + GY NG + ++ A+ P ++++D+ + ++ G Sbjct: 11 QTILIADDDESIRQVLMILLRSVGYRIELVGNGSDLIQRAQVIMPHLLLIDVMMPDMDGY 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +Q++ D+ IP I +TA D G + Y+ KP + + ++ + Sbjct: 71 EALRQLRNDTRTAHIPAIMLTARGEPKDLVHGFDSGADDYVIKPFNTVELIARVRSQLRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|300869426|ref|ZP_07114011.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300332556|emb|CBN59209.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 377 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N + L+ Y NG +ALE +PD+I++D+ + I G+E+ Sbjct: 6 ILIVDDEPDNFDVIETLLSEQDYQLYYAANGHDALEYLDTFEPDLILLDVMMPGIDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QIK S+ Q +P+I VTA K D G + +ISKP++ + + Sbjct: 66 CRQIKALSKWQAVPIIMVTALNSKSDLAYCLTAGADDFISKPVNGIELRARVHSMLR 122 >gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] Length = 1337 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IVEDN+ +L ++ Y L +G E LE+ R PD+II D+ + +SG+ Sbjct: 1087 ATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGI 1145 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K IKED + IPV+ +TA E K G + YI+KP + + + I Sbjct: 1146 ELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLI 1203 >gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator [Prevotella oris F0302] Length = 1337 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IVEDN+ +L ++ Y L +G E LE+ R PD+II D+ + +SG+ Sbjct: 1087 ATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGI 1145 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K IKED + IPV+ +TA E K G + YI+KP + + + I Sbjct: 1146 ELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLI 1203 >gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED + RD + +GY +G +A+E R + PD+I++D+ L Sbjct: 1 MTQHILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVEWIRDNTPDLILLDLMLPVKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I +++++ +P+I VTA + D + G + YI KP S + ++ + Sbjct: 61 GHTICQEVRQ---FSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 215 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +M+V+D+ + L +D +E GY + NG EALEL + PD+II D+ + +++G Sbjct: 9 TKHLMLVDDDPNLILLVKDYLEFRGYQVITAENGREALELLEEQIPDLIICDVMMPQMNG 68 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+E+ + +PV+ ++A D + G + YI KP + ++ + Sbjct: 69 YNLVQHIRENLATEWVPVLFLSAKGQIQDRVKGLNTGADVYIVKPFEPEELVAQVESSLK 128 Query: 122 EA 123 +A Sbjct: 129 QA 130 >gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease [Bacillus anthracis CI] gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease protein [Bacillus cereus biovar anthracis str. CI] Length = 841 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 621 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 680 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 681 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKR 735 >gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++L + ++ G+ +G EAL++AR PD I+D+ + + G Sbjct: 9 RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ D + PV+ +TA D G + Y++KP SL + +K + Sbjct: 69 LLSKLRADGH--DAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRR 125 >gi|298530357|ref|ZP_07017759.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509731|gb|EFI33635.1| response regulator receiver protein [Desulfonatronospira thiodismutans ASO3-1] Length = 388 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 71/120 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +MI++D N+K+ ++++E SGY + +G AL+ A ++ PD+I++DI++ E+ Sbjct: 5 MQKTLMIIDDYPENLKVLQEMLEVSGYRVVAFPSGPLALKAADKNPPDLILLDIKMPEMD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K +L+EIPVI ++A D+ R G YI+KP + ++ Sbjct: 65 GFEVCRRLKAHDKLKEIPVIFISALDQVQDKIRAFSQGGADYITKPFHPEEVHARVTSHL 124 >gi|218246085|ref|YP_002371456.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|257059134|ref|YP_003137022.1| response regulator receiver protein [Cyanothece sp. PCC 8802] gi|218166563|gb|ACK65300.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|256589300|gb|ACV00187.1| response regulator receiver protein [Cyanothece sp. PCC 8802] Length = 122 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L L+ +G+ + +G +ALE ++ D+II+D+ + +++G Sbjct: 1 MTTILVTDDSTAQRELIAGLLVDNGFSVITAIDGEQALEKVQETLFDLIILDVVMPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++KED + Q IPVI + D +K G YI KP S + +E +++ +G Sbjct: 61 FQTCRKLKEDPKTQNIPVILCSTKNTDVDRYWAKKQGANEYIVKPFSPNELIEKVQQLLG 120 Query: 122 EA 123 +A Sbjct: 121 QA 122 >gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+ +K ++ GY + +G++ALE+AR+ KPD++I+DI L ++ G Sbjct: 8 KRILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIMLPKMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ Q++ +P + ++A + D+ G + Y+ KP LS + ++ + Sbjct: 68 EVLAQLQS---TGGVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRR 124 >gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] Length = 954 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +VM+VED N KL L++ G+I ++ NG EALE R + DVI+MD+Q+ + GL+ Sbjct: 703 RVMLVEDTAANRKLVTSLLKKRGHIVVEAHNGREALEKFRDDEFDVILMDVQMPIMDGLQ 762 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T I++ + P+IA+TA AM+GD E+ G +AYISKPI + + T++ Sbjct: 763 TTAAIRQIEREEGYEPTPIIAMTAHAMQGDREKCLGAGMDAYISKPIDIDDLLATLESL 821 Score = 82.1 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 7/118 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 V++V+DNE N K+ R+L+ + A T + EA+ L + D++++D + I Sbjct: 560 VLVVDDNETNRKILRELLRSWELDAFTTSDAEEAIRLFSEKQKVGDPFDLVLIDALMPGI 619 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETI 116 G ++ K++ + + P++ + A + + ER + ++KPI+ S +++ Sbjct: 620 DGYDLCKRL-GEVAGKTPPIVLMAAPSDRHHFREREEDLPIRSTLAKPITASSLHDSL 676 >gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51] gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED ++ ++ D + +GY AL+ +G +ALEL + D++I+DI L ++ G Sbjct: 5 MNKVLVVEDEDILREVIVDYLVENGYQALEAADGEKALELFLANSVDLVILDIVLPKVDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I+ +S IP+I +TA + + D + G + Y+ KP S + M +K+++ Sbjct: 65 WSVCRRIRRNSG---IPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFL 120 >gi|330965367|gb|EGH65627.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 641 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G NG+EA+ A +I+MD +L + G Sbjct: 513 RSILLVEDNPVNRTVVQAMLHNLGCKVDVAVNGVEAVMKAGAGNYALILMDCRLPVMDGY 572 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A++GD + + G + Y+ KP + + +++++ Sbjct: 573 EATRKIRQLSGLERIPIIALTANALQGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 630 >gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED+ + + + G+ G E LE +PDV+++D+ L +SG Sbjct: 1 MPRVLIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLLPFRPDVVVLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++I++ + +P+I VTA D + G + Y+ KP+ + I+ + Sbjct: 61 LDVCRRIRDRDQ---VPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family protein [Arthrospira platensis str. Paraca] Length = 227 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + GY + G++A LA+ H D++I+D L SGLE Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I Q++ P++ +TA D + G + Y+ KP L + ++ + Sbjct: 62 ICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|304320054|ref|YP_003853697.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis HTCC2503] gi|303298957|gb|ADM08556.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis HTCC2503] Length = 459 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D N+KL + + + G EA+ELAR PD+I++D+ + I Sbjct: 1 MTARVLVVDDLAPNVKLLEAKLRAEYFEVITALGGREAIELARTQSPDIILLDVMMPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K +KED + IPV+ VTA + D + G + +++KP+ ++ Sbjct: 61 GFETCKLLKEDPLTRHIPVVMVTALDQRSDRIAGLEAGADDFLTKPVQDLALFARVRNL 119 Score = 63.6 bits (155), Expect = 9e-09, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 6/93 (6%) Query: 33 RNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGD-- 90 + E L+ R PD+I++D+ L+ L + I+ + +P++A+ A + D Sbjct: 186 NDSRELLDRIRTDLPDMIMVDLGLESYDPLRLCSAIRSAEGSRLLPLLAI---ADQEDTR 242 Query: 91 -EERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + G Y+ +PI + ++ + Sbjct: 243 RLVKALDIGVNDYLMRPIDVQEMAARVRTQLRR 275 >gi|332662395|ref|YP_004445183.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332331209|gb|AEE48310.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1361 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++EDN + ++ Y NG EA Q PD+I+ DI + + G Sbjct: 1105 ARILLIEDNHDLRQYLTQILAGK-YQVRTLGNGREAQLNLEQWMPDLILSDIMMPLMDGF 1163 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +K + IP+I +TA A GD+ R + G + Y+ KP + + I+ + Sbjct: 1164 QFLEWLKSSEKHASIPIIMLTARADLGDKLRALRTGVDDYLVKPFVEAELLARIQNLLQR 1223 >gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] Length = 225 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++IVED E ++ + Y +G + +Q+ D+I++D+ L ++ G Sbjct: 3 SQKILIVEDEENIAEVLIAYAKQQNYETEHFNSGKGVVSFVKQNAVDLILLDLMLPDVDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K+I+ +P+I +TA + + D + + G + YI KP S + IK + Sbjct: 63 IELCKKIRA---FSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 72/124 (58%), Gaps = 3/124 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ ED E+N +L R L+ G I + NG++A+E R D+++MD + + G Sbjct: 642 ARILMAEDTEINRQLLRILLARKGCILQEVENGLQAVEAIRTGHYDLVLMDCMMPIMDGY 701 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T +I+ L P+IA+TA A++GD +R G + Y+SKP + M+T++K+ Sbjct: 702 QATAEIRAHEAARGLPRTPIIALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMQTVEKW 761 Query: 120 IGEA 123 + ++ Sbjct: 762 LQKS 765 >gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D+E ++ ++ G+ +G AL + +PD++++D+ L I G+ Sbjct: 4 AKILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGIDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I+++S ++P++ +TA + D R + G + Y+ KP + + ++ + E Sbjct: 64 EVCRLIRDES---DVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120 >gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++VED+ + G+ L +G + A PD++++D+ L Sbjct: 1 MTRRVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVMLPGFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ + +PV+ +TA + D G + Y++KP SL + + Sbjct: 61 GLEVCRRVQAQ---RAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1947 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60 +KV+IV+D+ N+ ++E + NG +A+EL ++ PD+ ++MDI + E+ Sbjct: 1827 RKVLIVDDDARNIFALSIVLENQEMNIISATNGRQAIELI-ENTPDLSMVLMDIMMPEMD 1885 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++I+ ++ + +P++A+TA AMKGD E+ + G YI+KP++ + ++ ++ Sbjct: 1886 GYETMRRIRNNARFRSLPILALTAKAMKGDREKCLEAGASDYIAKPVNTDQLLSLLRVWL 1945 Query: 121 GE 122 Sbjct: 1946 HR 1947 Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDN+L + +L+ G EAL+ D ++D++L ++SG Sbjct: 1681 KRLLVVEDNDLERQSIVELLGHDDIEITTVGTGSEALQELLDKPFDCGVLDLRLPDMSGF 1740 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +I+ +S L+++P++ T + +EE K ++ + K + S ++ Sbjct: 1741 ELLDRIQAESNLRDVPIVVFTGKELSREEESHLKTVAKSIVLKDVRSPERLLD 1793 Score = 90.6 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ L G+ L G AL LARQ P I +DI L ++ G + Sbjct: 1562 LIVEDDPHYARVLLGLARDKGFKGLVAMRGQHALTLARQFLPTAITLDIFLPDMLGWTVL 1621 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 +K D + IPV ++ + + + G +Y+ KP + E IK + Sbjct: 1622 NNLKLDPNTRHIPVQIIS---LDEERQHGLSHGAFSYMVKPATTEDLDVAFERIKTF 1675 >gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 46/118 (38%), Positives = 77/118 (65%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY NG AL++ + K D ++MDIQ+ + GL Sbjct: 1112 VLLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMLDKAKYDAVLMDIQMPVMDGLTA 1171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK++++ + E+PVIA+TA AM GD E+ G A+I+KPI L+ +T+ +IGE Sbjct: 1172 TKELRKRYPVDELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFDTLSHWIGE 1229 Score = 98.7 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++++DN ++++ ++ + +G E L ++ D++++D + E+ G+E Sbjct: 968 KTLVIDDNPTALQIYSSVMRDFHFNVDTAASGPEGLYKLSKNPVDLLLLDWMMPEMDGVE 1027 Query: 64 ITKQIKE---DSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + KQI + D L++ P +I +TA+ + ++ + A + KP S + I Sbjct: 1028 VIKQIDQMVADGRLEKRPIIIMMTAYTAEPMQKDVEAANVFALLQKPFKASSLFDEI 1084 >gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 63/107 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D E +L + +E GY L +G EAL + + +P+++++DI L ISGLE+ Sbjct: 4 ILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLPGISGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 QI++ + E+PVI +TA + D+ + G + YI+KP S Sbjct: 64 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 110 >gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 225 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++VED+E + + + Y +G E + D+I++D+ L +++G+E Sbjct: 2 KFLLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLPKLNGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ +PV+ +TA D+ G + Y+ KP L + I+ + Sbjct: 62 LCQRLRQ--RGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRR 118 >gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 993 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 76/125 (60%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 K+V++V+D E N +L +++ +G + NG EAL++ + + ++++MD+Q+ Sbjct: 582 KRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYELVLMDMQMP 641 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G T+ ++E + PVIA+T AM+GD E+ GC+ +++KP++L +E + Sbjct: 642 VLDGYSATRLLREREDT--TPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLDELLEMVS 699 Query: 118 KYIGE 122 +Y+GE Sbjct: 700 QYLGE 704 >gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp. EuI1c] Length = 1389 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 56/115 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN L+ +G+ + +G AL+ R D+++ D+ + + GLE Sbjct: 632 RVLVADDNADMRGYLTRLLRGAGHTVVAVNDGRAALDALRAEPFDLVVSDVMMPGLDGLE 691 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++ D +PV+ ++A A + + + G + Y+ KP + + + ++ Sbjct: 692 LVAALRADRRTASVPVLLLSARAGEEASVQGLEAGADDYLVKPFAAADLLARVRA 746 >gi|119490895|ref|ZP_01623178.1| Response regulator receiver (CheY) modulated Serine phosphatase [Lyngbya sp. PCC 8106] gi|119453713|gb|EAW34872.1| Response regulator receiver (CheY) modulated Serine phosphatase [Lyngbya sp. PCC 8106] Length = 379 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ + +L R ++ GY NG E +E A+ +P +II D + ++G Sbjct: 1 MFKILVIDDDTVIRELLRRTLKKQGYDVSVASNGEEGIEKAKVLRPALIICDWIMPRLTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +Q+K++ EL +T+ D + G + +ISKP+ ++ ++ + Sbjct: 61 IEVCRQVKDNPELSTTQFFLLTSLGSISDRVKGLDAGADDFISKPLEMNELYARVRAGLR 120 >gi|171056736|ref|YP_001789085.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6] gi|170774181|gb|ACB32320.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6] Length = 382 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 65/119 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D E N++L DL+ G+ +G +ALE PD++++D+ + +SG Sbjct: 15 AHILVVDDVEQNVRLLADLLVFQGWRVSTAMSGEQALERIATDAPDLVLLDVMMPGLSGY 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ + + +P++ VTA + + + G + +ISKPI+ M ++ + Sbjct: 75 DVCRRLRAEPDHALLPIVLVTALDPTAERVKGLEAGADDFISKPINRPELMARVRSLLR 133 >gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E +L +D +E SG+ NG L+ + D++I+D+ L I G Sbjct: 1 MSRILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+++E ++ P+I V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKKVRE---VKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] Length = 230 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|328861007|gb|EGG10111.1| hypothetical protein MELLADRAFT_115552 [Melampsora larici-populina 98AG31] Length = 2085 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I +DN+ R ++ Y + +G+EA A+ H PD+++ D+ + ++G E Sbjct: 1256 TILIADDNDDMRSFVRSVLSRY-YTVAEASDGLEAYHWAKAHHPDLVVSDVMMPALNGFE 1314 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K++K D + I VI ++A A G + Y+ KP + I ++ Sbjct: 1315 LLKRLKTDPDTAGISVILLSAHAGSEIRIEGLAEGADDYLVKPFEAKELVARINTHL 1371 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 12/129 (9%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--------VIIMDIQ 55 V++VEDN +N+K+ + + GY +G + L++ + +++MDIQ Sbjct: 1953 HVLVVEDNLINVKVIKRQLSLKGYSVSVAMDGRQGLDILYEDDQHPSELGRIGIVLMDIQ 2012 Query: 56 LQEISGLEITKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + ++GL+ +++ + ++ PVIAVT A K E+ G + KP + Sbjct: 2013 MPVMNGLDAITELRASEKTGKVKQRYPVIAVTGNARKEQTEQFLASGFDDICVKPYKIED 2072 Query: 112 FMETIKKYI 120 ++ + Sbjct: 2073 VQNRMEALL 2081 >gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 222 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D E + R E G ++ +GMEA++LA+ D+II+DI + E+ G Sbjct: 1 MYRILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQDFDIIILDIMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I++ ++ PVI ++A + D + G + Y+ KP S M + + Sbjct: 61 FSACKEIRK---YKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|301301253|ref|ZP_07207408.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851129|gb|EFK78858.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 223 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D + L + +E +GY NG +AL+ K D II+D+ L I G Sbjct: 1 MAKVLVVDDEQAITTLLKYNLEKAGYEVKIVNNGNDALDEGLTGKYDFIILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+TK+I+++ ++ +TA + D+ + G + Y++KP S + +K Sbjct: 61 IEVTKRIRQEKIT--TYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 ++ V+IV+D++ L +E GY +Q +G EAL+ + D++I+D+ + ++ Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G++ ++I+E+S IP++ ++A + D+ G + Y+ KP + +K Sbjct: 61 NGIDTCRRIRENS---SIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51] gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 6/125 (4%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K+ V++V+D E ++ +++ Y L NG ALE ++ PD++I+D+ L Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G E+ + I+E ++P++ ++A D+ G + Y+ KP S +K Sbjct: 61 IDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKA 117 Query: 119 YIGEA 123 + + Sbjct: 118 LLRRS 122 >gi|117925634|ref|YP_866251.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117609390|gb|ABK44845.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 252 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+E +L D + +G+I +G + E + +PD+++MD+ L GL Sbjct: 13 HILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGEDGLT 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +T+ ++ + IP+I +TA + D + G + Y+ KP + + I + A Sbjct: 73 LTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRRA 132 >gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D+ +L E G+ +G +AL RQ + + I+D + +SG + Sbjct: 9 TILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPLMSGYD 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ IP++ VTA D + G + Y+ KP ++ + ++ + Sbjct: 69 VCQRLRDTGNT--IPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRR 125 >gi|295085367|emb|CBK66890.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1263 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+++TS Y NG +AL + R+ PD++I DI + E+SG Sbjct: 999 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1057 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK D E+ IPV+ +TA + + + G +AYI+KP S+ I TIK + Sbjct: 1058 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1117 Query: 122 EA 123 A Sbjct: 1118 RA 1119 >gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] Length = 230 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E ++ + D++I+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1051 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N L L++ G+ + NG EA+ + +Q P +I MD+ + I G E Sbjct: 830 RILVVEDNPVNRLLLTTLLQDVGFEVQEAENGQEAIAVWQQWHPHLIFMDMHMPVIDGFE 889 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ IK+ +IA+TA A + GC+ +ISKP +ET+ KY+G Sbjct: 890 ATQYIKQAEVDSLPVIIAITASAFTEQRQNCINAGCDDFISKPFRREQVLETLTKYLG 947 >gi|56752286|ref|YP_172987.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|24251267|gb|AAN46187.1| unknown protein [Synechococcus elongatus PCC 7942] gi|56687245|dbj|BAD80467.1| two-component response regulator [Synechococcus elongatus PCC 6301] Length = 126 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE N + + G+ + +G ++ AR+ +PD+I+MD+ L + G Sbjct: 6 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+Q+K D ELQ+ PVIA+TA AM D E+ GC+ Y +KPI L + I + + Sbjct: 66 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 125 Query: 122 E 122 Sbjct: 126 R 126 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ LN +L+ Y +G A + + + D+I++D+ L ++ G+ Sbjct: 2 KILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ ++ ++P++ +T ++ G + Y+ KP + + I+ + Sbjct: 62 LCRKIRSNNL--QMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRR 118 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + L+ G A+ N ++ E PD++I+D++L I+G+E Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ DS E+P++ +T + ++ G + ++SKPI + I + Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLER 515 >gi|288959193|ref|YP_003449534.1| two-component response regulator, modulated serine phosphatase [Azospirillum sp. B510] gi|288911501|dbj|BAI72990.1| two-component response regulator, modulated serine phosphatase [Azospirillum sp. B510] Length = 416 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V+IV+DN +N L L+E G Q +G +AL + KPD+I++D+ + + G Sbjct: 35 ARVLIVDDNRMNRNLLTALLERGGITLIDQAEDGQDALTRMERCKPDLILLDLMMPRMDG 94 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ D + +PV+ ++ D R G YI+KP+S + ++ + Sbjct: 95 FEMCRHLRADPRWKSLPVLVQSSLDRPEDRARAFIAGATDYITKPVSAVELLARVRIQLR 154 Query: 122 E 122 + Sbjct: 155 K 155 >gi|172037422|ref|YP_001803923.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698876|gb|ACB51857.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 353 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D N+ L + +E G+ + +G AL Q PD+I++D+ + + Sbjct: 1 MNHYILVVDDIPDNLLLIQLALEQDGHQLVSVNDGFSALAQIDQCPPDLILLDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++I+++S L IP++ +TA + + + G + +I KP+ + ++ + Sbjct: 61 GYEVTQKIRQNSRLPYIPILLITAH-EQSNVVKGLDTGADDFIRKPVQIDELQARVRSLL 119 Query: 121 G 121 Sbjct: 120 R 120 >gi|52079560|ref|YP_078351.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52784924|ref|YP_090753.1| hypothetical protein BLi01152 [Bacillus licheniformis ATCC 14580] gi|319646651|ref|ZP_08000880.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2] gi|52002771|gb|AAU22713.1| Two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52347426|gb|AAU40060.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391239|gb|EFV72037.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2] Length = 224 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + L +E Y + G EAL+L + D++I+DI + E+ G + Sbjct: 3 VLLVDDENRMLDLLELYLEH--YSCTKAATGKEALDLIKMRNFDLVILDIMMPEMDGWTV 60 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ L IPVI +TA + D R G + Y++KP S + + I+ + Sbjct: 61 CKEIR---RLTSIPVIMLTAKNGQDDIVRGLNCGADDYLTKPFSEKVLLAKIEAVLRR 115 >gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + +L + + GY + N L++ + ++++DI + + GLE+ Sbjct: 6 ILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKETIHLVLLDIMMPGMDGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E IP+I ++A + D+ G + Y+ KP + +K + Sbjct: 66 CKKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|45934807|gb|AAS79471.1| putative two-component system response regulator [Streptomyces bikiniensis] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+E+ + +E GY +G+ LEL R+ + D++++D+ L + G+ Sbjct: 2 TVLLVEDDEVIRRSVAMSLERYGYRVRVAADGLTGLELFREGRHDLVLLDVMLPGLDGIG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E P++ ++A D + G + Y+ KP+ ++ + I+ + A Sbjct: 62 LCRRIRE---TATDPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRA 118 >gi|315224472|ref|ZP_07866299.1| DNA-binding response regulator/sensor histidine kinase [Capnocytophaga ochracea F0287] gi|314945493|gb|EFS97515.1| DNA-binding response regulator/sensor histidine kinase [Capnocytophaga ochracea F0287] Length = 934 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDNE + R ++ Y ++ NG E E+A++H PDV+I D+ + + G + Sbjct: 686 TVLIVEDNEDMRQFIRYILSDD-YNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDGFD 744 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK + IPVI +TA+A+ ++ + G +AYI+KP ++ + ++K I Sbjct: 745 LCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLI 801 >gi|238025638|ref|YP_002909870.1| Two component transcriptional regulator, AraC family protein [Burkholderia glumae BGR1] gi|237880303|gb|ACR32634.1| Two component transcriptional regulator, AraC family protein [Burkholderia glumae BGR1] Length = 259 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ + L + + G+ +G++ L AR +PD+I+MDI + G Sbjct: 1 MNRVLVVDDHLDDRSLLAEFLRQQGFRVFMASDGLDGLAKARVVRPDLILMDINMPNCDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +++K D +P+I +TA + + G YI+KP I ++ Sbjct: 61 LTACRKLKCDPATSAVPLIFLTASTQPEERVAGLEAGAIDYIAKPFHFEEVRLRIAIHLR 120 >gi|119486032|ref|ZP_01620094.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456807|gb|EAW37935.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Lyngbya sp. PCC 8106] Length = 440 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY Q NG AL + KPD+I++DI + E++G + Sbjct: 14 ILVVDDTPANLRLLSKMMTEHGYNVRQAINGKMALTAVKAVKPDLILLDINMPEMNGYTV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K++ E IP+I ++A D+ + + G Y++KP L + I+ + Sbjct: 74 CETLKKNEETCSIPIIFLSALDDALDKVKAFQVGGVDYVTKPFQLEEILVRIQNQL 129 >gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K+ ++IV+D +L D + + + A+ R+G E + +H D++++D+ L + Sbjct: 1 MEKRDCILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRHAIDLVVLDLMLPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL + ++++ S +PV+ +TA + D + G + Y+ KP S + IK Sbjct: 61 TDGLSLCRELRAKS---NLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKA 117 Query: 119 YIGE 122 + Sbjct: 118 VLRR 121 >gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 236 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D L +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ + L++ G+ +G+ AL+L + D++++D+ + G Sbjct: 1 MNHILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q++E + + +P++ ++A + D+ G + Y+ KP S + + I + Sbjct: 61 LEVCRQLRERAAV--LPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|91789988|ref|YP_550940.1| response regulator receiver protein [Polaromonas sp. JS666] gi|91699213|gb|ABE46042.1| response regulator receiver protein [Polaromonas sp. JS666] Length = 125 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I +D + L++ G+ +G AL+ PD+I++DI L Sbjct: 1 MSKRILIADDEPNIVVSLEFLMKREGFDVQVAVDGEAALQAIAAQVPDLILLDIMLPRKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+ + + Q + V+ +TA + + G +AY++KP S + +++ + Sbjct: 61 GFEVCQQIRANPQWQSVKVVMLTAKGRDTEVSKGLALGADAYMTKPFSTKDLVAQVRQLL 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L +E +GY G + E A+ PD++I+D+ L + G Sbjct: 1 MPNILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + ++ DS +P++ +TA D+ + G + Y++KP + + ++ + Sbjct: 61 LQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 213 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ + L +D +E GY NG EAL+L PD+I+ DI + E+ G Sbjct: 9 HLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDGYA 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +Q++++ ++ IPV+ ++A + + G + Y++KP ++ + +A Sbjct: 69 FIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQA 128 >gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + ++ G L+ +G+EALE+ +H+ +I++D+ + + G+ Sbjct: 6 VLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEMLNEHQVHLIVLDVMMPNLDGISA 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E + IP+I ++A + D+ + G + Y++KP + + +K + Sbjct: 66 TYKIREK---KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120 >gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 225 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + SGY ++ +GMEA+++ Q+ +II+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQNDIALIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ S+ +P+I +TA + DE + + G + YISKP S I + ++ + Sbjct: 65 QVCREVRMHSK---VPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121 >gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D + + L +D +E GY NG EA+E A + PD++++D+ + E G Sbjct: 1 MYKILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQASK-SPDLMLLDVNMPEADG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ + P++ +TA D+ + G + YI KP SL I +I Sbjct: 60 FEVCRKVR---DHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 869 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ ED+E+ R L+E +GY RNG EAL+L H D ++MDIQ+ + G+E Sbjct: 742 RVLLAEDDEVTQFAVRKLLEKAGYTVSIARNGEEALDLLGAHDFDAVLMDIQMPVMGGIE 801 Query: 64 ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ + IP+IA+TA+AM GD E+ G YI+KP+ + + +++ Sbjct: 802 ATRLIRSSATPEAKRSIPIIALTAYAMAGDREKFLDAGMNDYIAKPVQVVELKKALERA 860 >gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 239 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+++ED +L + GY +G L+ A Q D+II+DI L ++ Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +++++ + P+I +TA + + + K G + YI+KP ++ + + + Sbjct: 61 GFEILTRLRQNGV--KTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W] gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W] Length = 254 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 94 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 >gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes] gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes] gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032] gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED++ L ++ + +GY L+ NG +AL+ D++I+D+ + +S Sbjct: 1 MTHRILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFVDDSL-DLVILDVMMPGLS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +Q++ S +P++ +TA + D+ G + Y++KP S + + Sbjct: 60 GIETCQQMRASS---NVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 224 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED K+ ++ Y NG EAL+ + D++I+DI + E+ GL Sbjct: 2 KILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ +PV+ +TA D+ G + Y+ KP + I+ + + Sbjct: 62 LVKKLR--DGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRS 119 >gi|256819065|ref|YP_003140344.1| two component transcriptional regulator, AraC family [Capnocytophaga ochracea DSM 7271] gi|256580648|gb|ACU91783.1| two component transcriptional regulator, AraC family [Capnocytophaga ochracea DSM 7271] Length = 934 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDNE + R ++ Y ++ NG E E+A++H PDV+I D+ + + G + Sbjct: 686 TVLIVEDNEDMRQFIRYILSDD-YNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDGFD 744 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK + IPVI +TA+A+ ++ + G +AYI+KP ++ + ++K I Sbjct: 745 LCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLI 801 >gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + +GY L+ ++G EA++ K +++++D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIKGINLLVLDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I++ + ++P+I +TA + DE + G + YISKP S I + ++ + Sbjct: 65 EVVKEIRK---VSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 >gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 259 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED+ L L+ +G+ RNG E + D++++D+ L SGL Sbjct: 25 AHILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVMLPGQSGL 84 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + I+ SE +P+I VTA + D + G + Y+ KP S + I+ + Sbjct: 85 DLCRTIRARSE---VPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRR 141 Query: 123 A 123 A Sbjct: 142 A 142 >gi|317051354|ref|YP_004112470.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316946438|gb|ADU65914.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 124 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 68/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDNELN + + GY + +G E L A +H+PD+I+MD+ L + G Sbjct: 1 MATILLIEDNELNCDMLTRRLTRKGYEVITAGDGAEGLRKATEHQPDLILMDMSLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+++ IPV+A+TA A+ D R + GC + +KP+ L +E I + Sbjct: 61 WEATRRIRDNQRTTHIPVLALTAHALPEDRRRAFEVGCSDFETKPVHLPQLLEKIADLL 119 >gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 254 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + + P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +++ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117 >gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 224 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D++ L + ++E +GY NG AL++ + D++++DI + ++ G Sbjct: 1 MFHILVVDDDKHTRMLLQAILEEAGYTVTTADNGETALDVLDKEHIDLVVLDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E TK I+E ++ +P++ VTA DE++ G + YI+KPI + IK + Sbjct: 61 YEFTKTIRETNDA--LPILMVTAKQDAADEKQGFLVGTDDYITKPIDEEKMLLRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED++ L ++ + +GY + NG +AL+ D++I+D+ + IS Sbjct: 1 MTHRILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFVDDSL-DLVILDVMMPGIS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +Q++ S +P++ +TA + D+ G + Y++KP S + + Sbjct: 60 GIETCQQMRASS---NVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1] gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1] Length = 243 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VEDNE + G +G E + ++ + D++I+D L + G+ Sbjct: 11 KVLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWMLPGMDGVT 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E E +IP+I +TA + D+ + G + Y++KP S M I+ Sbjct: 71 ICRKIRE--ERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRR 127 >gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D+ L +E G+ + +G A++ A D II+D+ L +++ Sbjct: 1 MNNNILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+E + PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 61 GFEVLKAIREHLQT---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] Length = 227 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+ +VED E L R +E GY G EA ++ PD++I+D L +S Sbjct: 1 MVPKIAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQERIPDLLILDWMLPGVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ E + +P+I +TA + + R G + Y+ KP S M +K + Sbjct: 61 GIELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAML 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 223 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED L RD + + + NG E L + K D++++DI + + Sbjct: 1 MRKSILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++E + +PV+ +TA + D+ + G + YI+KP S + + +K + Sbjct: 61 GLTMLEKLRE---VSTVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|148546933|ref|YP_001267035.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida F1] gi|148510991|gb|ABQ77851.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida F1] Length = 643 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + ++ + G +G+EA+E + + ++MD +L + G E Sbjct: 517 VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVERVGRQRFAAVLMDCRLPHLDGYEA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ +P+IA+TA A++GD ER G + Y+SKP+ + + +++++ Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632 >gi|295085550|emb|CBK67073.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1350 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+V+DN + ++ Y + +G EAL++ ++ D+II D+ ++E+ G E+ Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 +IK + + +PVI +TA + + + G +AYI KP S + + E Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1205 Query: 123 A 123 + Sbjct: 1206 S 1206 >gi|323528571|ref|YP_004230723.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385573|gb|ADX57663.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 246 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E +G NG + Q PD+I++D+ + GL Sbjct: 6 HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +PV+ +TA + D + G + Y+ KP ++ + I+ + A Sbjct: 66 LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 >gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D +L + SG+ + +G EA+ A + +PD++++D+ L ++ G Sbjct: 9 ARLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVMLPDMDGF 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E ++PV+ +TA D+ + + Y++KP SL + I+ + Sbjct: 69 AVAGRLREMGG--QMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRR 125 >gi|262406003|ref|ZP_06082553.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294806907|ref|ZP_06765732.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262356878|gb|EEZ05968.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294445936|gb|EFG14578.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1342 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+V+DN + ++ Y + +G EAL++ ++ D+II D+ ++E+ G E+ Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 +IK + + +PVI +TA + + + G +AYI KP S + + E Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1205 Query: 123 A 123 + Sbjct: 1206 S 1206 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D E +L ++ GY +G A++ R KPD +I+D+ + + G Sbjct: 14 AKILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D E P + ++A D+ G + Y++KP SL + ++ + Sbjct: 74 GLLRRLRADGI--EAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRR 131 Query: 123 A 123 + Sbjct: 132 S 132 >gi|237718991|ref|ZP_04549472.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451769|gb|EEO57560.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1342 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+V+DN + ++ Y + +G EAL++ ++ D+II D+ ++E+ G E+ Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 +IK + + +PVI +TA + + + G +AYI KP S + + E Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1205 Query: 123 A 123 + Sbjct: 1206 S 1206 >gi|237717236|ref|ZP_04547717.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229443219|gb|EEO49010.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1337 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+V+DN + ++ Y + +G EAL++ ++ D+II D+ ++E+ G E+ Sbjct: 1082 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1140 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 +IK + + +PVI +TA + + + G +AYI KP S + + E Sbjct: 1141 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKRE 1200 Query: 123 A 123 + Sbjct: 1201 S 1201 >gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 778 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+ N R L+E SG+ NG EAL+L R D+++MDIQ+ + G E Sbjct: 649 HVLMVEDDPSNQVATRKLLEKSGHAVTLAENGQEALDLLRTGDFDIVLMDIQMPVMGGQE 708 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ L + IPVIA+TA+AM GD E+ G + Y+ KP+SL I+K+ Sbjct: 709 ATKEIRNSPGLAACKSIPVIALTAYAMTGDREKFLASGMDDYLVKPVSLENLQRMIEKHA 768 Query: 121 GEA 123 A Sbjct: 769 PRA 771 >gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] Length = 232 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + L ++ Y + + ++AL + D+ I+D+ + + Sbjct: 1 MKTKILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +I++ PV+ +TA D+ G + YI+KP + +K + Sbjct: 61 GFALCAKIRDKYTF---PVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + GY L+ +GMEA++ + K +II+D+ + ++ G Sbjct: 11 KILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMPKMDGW 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S+ +P+I +TA + + DE + G + YISKP S I + ++ + Sbjct: 71 QVCREIRMHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 127 >gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response regulator protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response regulator protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 890 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNELN ++ +L+ G NG AL++A Q D+I+MD+Q+ + GL Sbjct: 549 RILLAEDNELNQQVAMELLRAVGADVSIAGNGAIALQMAAQQPYDLILMDMQMPVMDGLA 608 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+Q+++ S+ +IP++A+TA M GD ER G + +I+KPI +++++ Sbjct: 609 ATRQLRQQESDGHQIPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDKLYAALQRWV 666 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 55/119 (46%), Gaps = 5/119 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 +++++ +D+ + L+ + ++ +G +AL++ + +V+++D + Sbjct: 403 RRMLVADDSASARTILAALLRSMSFVVDTAESGQQALQMIASAEQEGNAYEVVLLDWHMP 462 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+E +++ + + + VT + + + G + + KP+ S+ +TI Sbjct: 463 GLDGIETGRRLIARGLGKRLYRVMVTGYGREEVFREAQSAGFDRVLVKPVCASVLFDTI 521 >gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ + + ++ G E +E AR+HKP+V+++DI L + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++ E + +I +TA + D+ + G + YI KP + IK + Sbjct: 61 LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 916 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 69/118 (58%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ EDN +N ++ + ++ G + +G +A++L R H D+I+MD Q+ + G E Sbjct: 662 VLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLIRNHHYDIILMDCQMPVMDGFEA 721 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T QI++ L +IP+IA+TA A + D + G + ++SKP +L + I +++ + Sbjct: 722 TAQIRQH--LNKIPIIALTANATEDDRTQCLNAGMDDFLSKPYTLDQLQQKILQWLPQ 777 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 ++++V+DN+ N ++ R ++ A+ T + AL + ++I+D+ + + Sbjct: 515 RILVVDDNQTNREILRLQLQNWKIQAVCTHSADHALFAMTKACNINEPYHLVILDMHMPK 574 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL++ K+I D L + ++ +T+ + G Y++KP+ ++ I Sbjct: 575 MDGLQLAKKIHADPTLNKTRIMMLTSTHHDVTQLAKDNAGILRYVNKPVRQKELIDIIMD 634 Query: 119 YIGE 122 +G Sbjct: 635 VMGR 638 >gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF] gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE] gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU] gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056] gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058] gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059] gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE] gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii] gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC 17978] gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2] gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] Length = 254 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + + P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|146342589|ref|YP_001207637.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146195395|emb|CAL79420.1| putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 1231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN R L+ T Y +G ALE + KPD+++ D+ + ++ G+ Sbjct: 641 ARILLADDNADMRDYVRRLLVTR-YDVEAVADGKAALEAIARAKPDLVLSDVMMPQLDGM 699 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ +++ D++ +PVI ++A A + + G + Y+ KP S + ++ ++ Sbjct: 700 QLLARVRADAQFSTVPVILLSARAGEESRVEGMQAGADDYLIKPFSARELLARVEAHL 757 >gi|152995117|ref|YP_001339952.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinomonas sp. MWYL1] gi|150836041|gb|ABR70017.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinomonas sp. MWYL1] Length = 331 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 70/117 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D N+++ R +++ + Y R+G +AL+L + D+I++DI + ++GLE Sbjct: 10 RILLVDDEPSNLRVLRQVLQAARYRLSFARSGQDALKLVEKEPVDLILLDIMMPNMTGLE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K++ IPVI VTA DE + + G YI KPI +I + +K ++ Sbjct: 70 VCERLKQNPATAHIPVIFVTALKDSIDEAKGFEIGAVDYIVKPIVPAIVLARVKTHL 126 >gi|313497980|gb|ADR59346.1| Integral membrane sensor hybrid histidine kinase [Pseudomonas putida BIRD-1] Length = 643 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 69/116 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + ++ + G +G+EA+EL + + ++MD +L + G E Sbjct: 517 VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYEA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ +P+IA+TA A++GD ER G + Y+SKP+ + + +++++ Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632 >gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED + K+ + +E GY Q +G E L+ + D+I++D+ + +ISG ++ Sbjct: 6 ILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMIPKISGEDL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ S +PVI VTA + + K G + Y++KP S M+ IK + Sbjct: 66 IKEIRNKS---NVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRR 120 >gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ G+ +G +ALE R+ +PD++++D+ L Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLPGAD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +QI+ +S +P++ +TA + D + G + YI KP + ++ + Sbjct: 61 GIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+ VED+ + + + GY + + LEL +Q D++++D+ L + SG Sbjct: 1 MNKICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+++EDS L+EIPVI +TA + + G + YI+KP + + + + Sbjct: 61 YEICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +++ GY G +LA Q D++I+D L SGLE Sbjct: 2 RILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDYDLLILDWMLPHQSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ + PV+ +TA D G + Y+ KP L + ++ + + Sbjct: 62 LCQQLRSQGKT--TPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRS 119 >gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 227 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED E L+E GY +G++A+E+ H D+I++D+ L + G Sbjct: 1 MTKILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ S +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRAIRAKSM---VPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 244 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 1/123 (0%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K + +VED +L + +E GY NG L+ R P++ ++DI L +I Sbjct: 1 MTKSLIYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQETRLKVPELFLLDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ K ++++ ++P+I +TA + D+ + G + YI+KP S+ + +K Sbjct: 61 DGLELCKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL +D + + L+ +G EA+++ ++ ++I+D+ + ++ G Sbjct: 5 KILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEKDIALLILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+++S+ +P+I +TA + DE + G + YISKP S I + ++ + Sbjct: 65 EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 >gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL + K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 236 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ + +G ALE + D++++D+ L +SG Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRA---TSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|209516015|ref|ZP_03264875.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209503475|gb|EEA03471.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 241 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|159045360|ref|YP_001534154.1| response regulator [Dinoroseobacter shibae DFL 12] gi|157913120|gb|ABV94553.1| response regulator [Dinoroseobacter shibae DFL 12] Length = 462 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D N + + + T+ Y LQ NG A+++A + +PD+I++D+ + ++ Sbjct: 1 MSGKILVVDDVATNRIVMKVKLATACYDVLQADNGASAIKMAHEAQPDLILLDVLMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++K D E IP+I +T+ R G + +++KP++ + ++ + Sbjct: 61 GYTVCERLKADPETAHIPIIMITSLNDTEARVRGLSCGADEFLTKPVTELTLLARVRSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 35.5 bits (82), Expect = 2.5, Method: Composition-based stats. Identities = 5/55 (9%), Positives = 17/55 (30%) Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++ I + R G + + PI++ ++ + Sbjct: 219 LRSRPATRQSRQIFILPQGETELAARALDLGADDVVFAPIAVEEMAVRLRAQLQR 273 >gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 219 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + + ++ Y +G L+ A D+II+D+ L I+G Sbjct: 1 MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +QI+++ Q P+I +TA D+ G + YI KP + + I+ + Sbjct: 61 LEICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220908072|ref|YP_002483383.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] gi|219864683|gb|ACL45022.1| response regulator receiver modulated serine phosphatase [Cyanothece sp. PCC 7425] Length = 392 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 60/117 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ + ++ + ++ GY +G LEL + P +II D ++ + GLE+ Sbjct: 11 ILLIDDDRILQRILQKTLQEQGYDVSLASSGEAGLELVKHTHPQLIICDWLMEGMDGLEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK D +L I +T+ + D + G + ++SKPI S + ++ + Sbjct: 71 CQRIKTDPDLDHPFFILLTSRSAVEDRVQGLNTGADDFLSKPIDPSELIARVRAGLR 127 >gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 510 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L D + +G+ L ++G++AL++ +PD+I++D+ + E+ G E+ Sbjct: 8 ILLVDDTVANLQLVSDFLMKAGFNVLAVKSGIQALKIVAITEPDLILLDVVMPEMDGFEV 67 Query: 65 TKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K E Q+IPVI +TA A + + K G YISKPI L + ++ ++ Sbjct: 68 CRRLKAQEETQDIPVIFMTAVADRANPSYKIKGLKLGAVDYISKPIQLEEVLLRVQTHL 126 >gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ L +++ GY NG EAL L + D++I+DI + ++ Sbjct: 1 MKEKILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +I+E +P+I ++A + D+ + G + YISKP + +K + Sbjct: 61 GILTCIKIREKF---TMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 242 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 +V+D+ +L + G+ ++ + + + KPD++++DI + GL + + Sbjct: 12 VVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREKPDLVVLDIMMPGEDGLALCR 71 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++ IP+I +TA A D + G + Y+ KP + + I+ + Sbjct: 72 HLRAETQ---IPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRR 124 >gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14] gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14] Length = 230 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L +D++E G+ ++ NG + LE + D+I++D+ + ++G Sbjct: 1 MAKILLVDDDIELTALLKDILELEGFDVIEANNGQQGLEKV-DNSIDLILLDVMMPVMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 TEMLRRLRE---AHSTPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 834 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 6/126 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQLQ 57 +V++VEDN N ++ R L+ G NG++A+ + + D+I MDIQ+ Sbjct: 477 RVLVVEDNPGNQEVARHLLGDLGLHVDICNNGLQAINRIKDALYRKEGLWDLIFMDIQMP 536 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ GL+ T+ +++ L + PVIA+TA A+ GD+ER K G YI+KPI ++ T+K Sbjct: 537 EMDGLQATQLLRKLPGLDKTPVIAMTAMAIAGDKERCLKAGMNDYITKPIDVNQLYRTLK 596 Query: 118 KYIGEA 123 ++ EA Sbjct: 597 AWMREA 602 >gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 230 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S IP++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---IPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612] gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + L + GY + + EAL ++ P++ ++D+ + E+ Sbjct: 1 MQTEILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++E P+I +TA + D+ G + Y++KP + +K + Sbjct: 61 GFTLCRRLREKYTF---PIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G E L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 224 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ ED ++ G+ +G + ++ D++I+DI + +I+G Sbjct: 1 MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++ Q PVI +TA D + G + Y+ KP S IK + Sbjct: 61 LELCHLYRQMFGYQA-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 68 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|330971298|gb|EGH71364.1| response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1172 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 1107 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167 Query: 122 E 122 + Sbjct: 1168 K 1168 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 842 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893 Score = 78.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992 >gi|329956519|ref|ZP_08297116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328524416|gb|EGF51486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1449 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + + S Y + NG E L+ A + PD+II D+ + + GLE+ Sbjct: 1190 ILVVEDNNELRHFLKSSLSGS-YNVITASNGKEGLQRAIDNVPDLIISDVMMPIMDGLEM 1248 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 QIK ++ + IP+I ++A A D + G + YI+KP S + I + + Sbjct: 1249 IGQIKANNNICHIPIIVLSAKASLDDRIAGLEHGIDDYITKPFSSTYLKIRITSLLRQ 1306 >gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D ++ + G+ ++G EALEL R +PDV+++D+ + E+ G Sbjct: 10 KILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPELDGFA 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ SE +PVI +TA D + G + Y+ KP S I+ + A Sbjct: 70 VLERIRAQSE---VPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRA 126 >gi|312797029|ref|YP_004029951.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica HKI 454] gi|312168804|emb|CBW75807.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica HKI 454] Length = 240 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D++ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVIDDDQELRDLLRDYLTRQGIEVSVLHDAASLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D++ + L + + G+ +G L ++++P ++++DI + + Sbjct: 1 MATRVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++ L +I +I +TA D+ G + Y+ KP S + ++ + Sbjct: 61 GLELCRRL---HVLGDIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] Length = 338 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N++L ++E+ G+ +T +G A++ A+ PD+I++DI + +++G E+ Sbjct: 13 ILIVDDNPDNLRLLSKMLESKGFKVKKTVSGEIAIQAAKIEPPDLILLDINMPDMNGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K + IP+I ++A D+ + G YI+KP + ++ + Sbjct: 73 CRQLKSQEKTANIPIIFISALDQTTDKIIAFEIGGGDYITKPFQELEVLARVRNQV 128 >gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1097 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN +N + +G+ G EA+ + D+++MD ++ ++ G+ Sbjct: 836 RVLVAEDNTVNQMFVASWLRNAGWECDVVATGEEAVHAFSNARYDLVLMDCRMPDMDGMT 895 Query: 64 ITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ E PVIA+TA AMKGD E K G + Y++KP + M TI + Sbjct: 896 ATQEIRSYEEATGSPSRTPVIALTANAMKGDRELCLKAGMDEYLTKPFTPEALMATIARV 955 Query: 120 I 120 + Sbjct: 956 L 956 >gi|167585829|ref|ZP_02378217.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 241 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 228 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + + + ++ GY NG LE A D I++D+ L EI+G Sbjct: 1 MSRILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ + + P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVCRRIRRE---KITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+I++D+ ++ D + G+ A + + L++ ++ K D++I+DI L + G Sbjct: 4 KKVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDEDGW 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+ ++P+I ++A D+ + G + YI+KP S + IK + Sbjct: 64 EFCQKIR---PEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRR 120 >gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 625 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ EDN +N ++L+E G+ + G ALE+ R+ + DVI+MDIQ+ E+ GLE Sbjct: 373 TILLAEDNPINQIYAQELLEMDGHRVMVAHTGRRALEMLRRQRFDVILMDIQMPEMDGLE 432 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++D+ +IP++A+TA A+KGD E + G Y+SKP+S + + + Sbjct: 433 ATRAIRQDTTGDFDPQIPIVALTAHALKGDRETFLRAGMNEYLSKPVSPESLAAALSRAM 492 Query: 121 GE 122 G Sbjct: 493 GR 494 >gi|312115580|ref|YP_004013176.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC 17100] gi|311220709|gb|ADP72077.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC 17100] Length = 125 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 82/120 (68%), Positives = 106/120 (88%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVEDNELNMKLF DL+E GY LQTRNG++A+ LAR+H+PD+I+MDIQL E+S Sbjct: 1 MGKTILIVEDNELNMKLFHDLLEAHGYTTLQTRNGIDAIALARKHRPDLIVMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++TK +KED L+ IP++AVTAFAMKGDEERIR+GGCEAY+SKPIS+S F+ETI+++I Sbjct: 61 GLDVTKWLKEDDSLRHIPIVAVTAFAMKGDEERIREGGCEAYVSKPISVSRFLETIRQFI 120 >gi|222081138|ref|YP_002540501.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725817|gb|ACM28906.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 241 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K + +V+D+ L +E GY +G+ + + D++++D+ + Sbjct: 1 MQKAAHIAVVDDHADIRNLVGQYLEQQGYRVSVADSGVALRRILERSAVDLVVLDVMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL + + ++ ++P+I +TA D + G + Y+ KP + + I+ Sbjct: 61 EDGLSVCRHLRA---TMDVPIIFLTAMTEDTDRIIGLELGADDYLVKPFNPRELLARIRA 117 Query: 119 YIGEA 123 + A Sbjct: 118 VLRRA 122 >gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1] Length = 1339 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++E G L +G + +E +H D+I+MD+ + E+ G Sbjct: 1220 TVLVVDDDARNLFALSGVLELHGVRVLHAEDGRKGIEALTRHAGVDLILMDVMMPELDGY 1279 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+ E +P+IAVTA AM GD E+ G Y++KP+ + ++ ++ Sbjct: 1280 AATAEIRRMPEYAALPIIAVTAKAMPGDREKSLASGASDYVTKPVDADDLIARVRHWLTR 1339 Score = 38.6 bits (90), Expect = 0.27, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%) Query: 23 ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 E G + + EA +++++ + + L + D L +PV+A Sbjct: 1089 EHGGIQIVNATSSREAAAALATDSFHCVVLELDMPDGEALRFLDALDGDPALSSLPVLA 1147 >gi|172061354|ref|YP_001809006.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993871|gb|ACB64790.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 241 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2] gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 243 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ + +G L + D+I++D+ + GL Sbjct: 10 KVLVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLMMPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y+ KP + + I + Sbjct: 70 ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 >gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ N+KL ++E +GY ++ +G L+ Q+ PD+I++D+ + + +G ++ Sbjct: 3 ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGFDV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ ++P+I ++A + D + G + Y+ KP S + ++ + Sbjct: 63 CRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRR 117 >gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 972 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ ED+ L+ + ++E SGY +G +AL+L + D+I+MD+Q+ + G+ Sbjct: 845 RRILLAEDDALSSLTCKRMLEKSGYSVAAANDGQKALQLLTEQDFDLILMDVQMPVMDGV 904 Query: 63 EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TK I+ S L IP++A+TA+AM GD+E+ G + YI+KP+ +E +++ Sbjct: 905 EATKAIRGSSILGVKSSIPIVAMTAYAMSGDKEKFLASGMDDYIAKPVDKEALVEVVERV 964 Query: 120 IG 121 + Sbjct: 965 LR 966 >gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] Length = 233 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV++V+D KL +D + GYI L+ +G EA+++ +K +II+D+ + ++ G Sbjct: 5 KVLVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNKDIGLIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E K+I++ ++P+I +TA + + DE + G + YI+KP S I + ++ + Sbjct: 65 ETCKEIRK---FSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRR 121 >gi|78355591|ref|YP_387040.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217996|gb|ABB37345.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 981 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 73/125 (58%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP------DVIIMDIQLQ 57 + ++VEDN +N + D+++ G+ + +G EAL + +P DV+ MDIQ+ Sbjct: 653 RALLVEDNIINRHVALDMLQDMGFSVVSAEHGEEALAVLDDVEPPSGPGFDVVFMDIQMP 712 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E T+ I++ + IP+IA+TA M D ++ + G Y++KP+ + ++ ++ Sbjct: 713 VMDGIEATRVIRQHPRWRHIPIIAMTAHVMSEDRDKALEAGMNDYVTKPVDRMMLLQVLQ 772 Query: 118 KYIGE 122 +++GE Sbjct: 773 RHVGE 777 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +V++VEDNE N + ++E GY ++G A E ++ D+I++D +L + G Sbjct: 515 RVLLVEDNESNRLVMTRMLERLGYDCDALQDGYTAYERLKRQAALYDLILLDWRLPGVDG 574 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + + PV +TAF + + ER + G +++SKP+ LS + I+ G Sbjct: 575 LEVLEKLRAEKQ-PLPPVFMMTAFGREAELERAEELGVASFLSKPVKLSSLSDAIRAMRG 633 Query: 122 E 122 E Sbjct: 634 E 634 >gi|26990865|ref|NP_746290.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida KT2440] gi|24985876|gb|AAN69754.1|AE016611_12 sensor histidine kinase/response regulator [Pseudomonas putida KT2440] Length = 643 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 69/116 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + ++ + G +G+EA+EL + + ++MD +L + G E Sbjct: 517 VLLVEDNPVNRSVVEAMLRSLGLAVCTAEDGLEAVELVGRQRFAAVLMDCRLPHLDGYEA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ +P+IA+TA A++GD ER G + Y+SKP+ + + +++++ Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQQVLQRWL 632 >gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M KK +++V+D + ++ + + + +G+EALE + D+II+DI + + Sbjct: 1 MEKKKSILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKLKNEAIDLIILDIMMPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+ +I+E+ +++P+I ++A + D+ G + Y+ KP + + +K Sbjct: 61 LDGIRTCLKIREE---KKMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKS 117 Query: 119 YIGE 122 I Sbjct: 118 QIRR 121 >gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E K ++ GY +G L+ A ++ DVI++D+ L E++G Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E ++ P+I +TA D G + Y+ KP ++ + I+ + Sbjct: 61 LEVARRLRES---KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus ATCC 53653] gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G E L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL+ K D++I+DI + + G + Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 73 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKR 128 >gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 236 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+D+ L R + GY ++ G E D+II+D+ L G Sbjct: 1 MKTILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTVDLIILDLMLPGEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + I+ Q P++ +TA + D + G + Y+ KP + I+ Sbjct: 61 LALCRTIRAR---QTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7] gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7] Length = 241 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + +L + +E Y+ + NG +A+++A ++ D+I++D+ L ++ G+E+ Sbjct: 9 LVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLMLPKMDGIEVA 68 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E ++ P++ +TA + + G + YI KP S + + + Sbjct: 69 GKIRE---AKDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKR 122 >gi|160945860|ref|ZP_02093086.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii M21/2] gi|158443591|gb|EDP20596.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii M21/2] Length = 224 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +D + + + E+ G+ L NG EAL+ + PD+I++DI + Sbjct: 1 MNAKILIADDESDIVSMLGNFFESKGFRVLPAFNGAEALKQVEKQ-PDIILLDINMPGTD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ K+I+ + P++ +TA D+ + G + YI KP SL ++ ++ Sbjct: 60 GLEVCKRIR---DHISCPILFLTARIEDTDKVKGFAVGGDDYIVKPFSLVELDARVRAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1] gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1] gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 225 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M +K V+++ED + + + GY +G+ L R+ PD++I+D+ L Sbjct: 1 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++I++ P+I +TA D+ G + Y+ KP S+ + ++ Sbjct: 61 LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 117 Query: 119 YIGE 122 ++ Sbjct: 118 HLRR 121 >gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1260 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59 KKV++VEDNE+N ++ DL+E +G+ NG EA+EL RQ + D+++MD+Q+ + Sbjct: 1136 KKVLLVEDNEMNRQIACDLLEDNGFEVFTAENGEEAVELVRQSVPGQYDIVLMDVQMPVM 1195 Query: 60 SGLEITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G T+ I+ IP+IA+TA A + D + G + +ISKPI+ + Sbjct: 1196 DGYAATRAIRVLPAGYQSRIPIIAMTANAFEEDRKAALDAGMDEHISKPINFDKMKYILS 1255 Query: 118 KYI 120 +++ Sbjct: 1256 RFL 1258 >gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 226 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G E L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 224 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED + ++ +GY +G EAL+ + D++I+DI + +++G E Sbjct: 2 KILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ + V+ +TA D+ + G + YI KP + M I+ + Sbjct: 62 VIKKLR--DKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRR 118 >gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 999 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 70/118 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E N +L +L+ G+ NG+EA+ L +Q P +I+MD+ + ++G + Sbjct: 784 RILIVEDVEDNRRLLFELLAQVGFEVRTADNGVEAISLWQQWHPHLILMDMLMPVMNGSQ 843 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+QIK E ++ +IA+TA A D+ K GC+ +I+KP I E I +++G Sbjct: 844 ATRQIKATQEGEKTVIIAITANAFSDDQLAAIKVGCDDFITKPFREQILFEKIAQHLG 901 >gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + G Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 232 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D++ + + ++ G + ++G++AL + ++ + +I+MDI + ++ G++ Sbjct: 6 ILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKT 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E ++IP+I ++A + D+ G + Y++KP + + +K + Sbjct: 66 TFKIREK---KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120 >gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 247 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D+ + +L + + G+ NG+ +Q +P ++++DI + E+ Sbjct: 1 MNQTILIVDDDPVVRELVSEYLHGRGFNVATLENGLALQRRLQQERPALVVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA A D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126] gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126] gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] Length = 229 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED + + ++ GY + NG E LE+A + D+I++D+ L E+ Sbjct: 1 MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++++ ++ ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1200 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 75/117 (64%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N ++ +L++++GY NG A+++ + + D ++MDIQ+ + GL Sbjct: 1080 RVLLVEDNFINQQVATELLKSAGYEVDVAENGQIAIDMIEEKEFDAVLMDIQMPVMDGLT 1139 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK++++ E+P+IA+TA AM GD E+ G A+I+KPI L+ +T+ +I Sbjct: 1140 ATKELRKRYSSTELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELFDTLSHWI 1196 Score = 94.0 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++V+DN ++++ +++ + +G EA+ + D++++D + E+ G+ Sbjct: 937 KTLVVDDNPTALQIYSSVMQDFHFEVDTAASGSEAIYKLGRSSVDLLLLDWMMPEMDGIA 996 Query: 64 ITKQI-K--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + ++ + D L + P+ I +TA+A + ++ + K A + KP S + I Sbjct: 997 VIDELDRMVADGRLDKRPIVIMMTAYAAEPLQKDVEKSNIFAMLQKPFKASALFDEI 1053 >gi|319642790|ref|ZP_07997428.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317385534|gb|EFV66475.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1353 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + + + Y L++ NG EALE PD++I D+ + E+ GL Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK++ L IPVI +TA + D + G +AY++KP + I +T I Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIR 1207 >gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 244 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++ +D+ ++ R L+ GY ++ NG+EA+E A H D+II+D+ + SG Sbjct: 17 MKKILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVEKA-DHTIDLIILDVMMPGCSG 75 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E +I++ S P++ +TA + D+E G + Y+ KP S + + Sbjct: 76 VEACGEIRKKSSA---PILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAMLR 132 Query: 122 E 122 Sbjct: 133 R 133 >gi|254881403|ref|ZP_05254113.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254834196|gb|EET14505.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1348 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + + + Y L++ NG EALE PD++I D+ + E+ GL Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK++ L IPVI +TA + D + G +AY++KP + I +T I Sbjct: 1150 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIR 1207 >gi|66045681|ref|YP_235522.1| response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63256388|gb|AAY37484.1| Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:CHASE3 [Pseudomonas syringae pv. syringae B728a] Length = 1172 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 1107 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1108 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167 Query: 122 E 122 + Sbjct: 1168 K 1168 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ ++ +E G Y KP + + K Sbjct: 842 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893 Score = 78.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992 >gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 234 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + +E GY+ +G EALE + K D+II+D+ L I G E+ Sbjct: 8 ILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVMLPGIGGFEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ +PV+ +TA + + D G + Y+ KP +L F+ + + + Sbjct: 68 CERIRTLD--SRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRS 124 >gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] Length = 231 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED L ++ Y + EALE ++ D+ I+DI L ++S Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I+E P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLTICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] Length = 831 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 9/128 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N + ++E G+ NG EA+E D+++MD+Q+ + G+E Sbjct: 572 ILLVEDNPVNQTVASRMLERVGHKVTVVNNGAEAIEAFDAGHFDLVLMDLQMPVMGGIEA 631 Query: 65 TKQIKEDSE---------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T+ I+ + +P++A+TA AM+ D R + G + Y++KPI + Sbjct: 632 TQAIRAREARRSWAVQGGWRAVPIVAMTAHAMESDRARCLEAGMDDYVAKPIRAGDLLAA 691 Query: 116 IKKYIGEA 123 I++ A Sbjct: 692 IRRVCSPA 699 Score = 51.7 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 34/72 (47%) Query: 46 KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 D ++MD + G + ++ +E + + V+ + + + D R ++ G ++ ++K Sbjct: 462 PFDFVLMDADMPAPGGFALAERFQEAAPALDRIVLMLPSHTQRADLVRCQQLGLQSRLAK 521 Query: 106 PISLSIFMETIK 117 P + E ++ Sbjct: 522 PFAAEDLYEALR 533 >gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L] gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L] Length = 254 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 94 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 >gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1271 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 41/115 (35%), Positives = 76/115 (66%), Gaps = 1/115 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN N +L ++ Y ++ NG++ALE+ + K D+++MD+Q+ + G E Sbjct: 1047 KILLVEDNHFNQRLVTHMLSDD-YSIVEVENGVQALEILEEQKFDLVLMDMQMPVMDGYE 1105 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I++ ++ + +P+IA+TA+AMKGD E+ GC Y++KP+ ++TIK+ Sbjct: 1106 TTRLIRKQNKYKNLPIIALTAYAMKGDSEKCMAAGCNGYLAKPVKRDQLIKTIKQ 1160 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 7/124 (5%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M++ V++VED+ +L + +E GY + T+ G +A+ LA+ ++PDV+I+DI L Sbjct: 783 MMQGKNGTVLVVEDDWTTKQLISNYLEKVGYSVITTQQGKQAITLAKIYRPDVMILDILL 842 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++G EI K+IK E ++IP++ + M +E+ G +I KPIS + + + Sbjct: 843 PDLTGWEILKRIKTYEETKDIPIVVCS--VMPE-KEQAFSLGAVDFIEKPISEKVLISRL 899 Query: 117 KKYI 120 K I Sbjct: 900 GKLI 903 Score = 81.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 +++++D E ++ + +IE GY +A Q I++D+ + ++G Sbjct: 912 HIVLIDDEEATLQFLKKIIENEGYRTHTFARAGDAFYYLMQGGAVHAILLDLLMPGMNGF 971 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYI 120 E + ++ E ++IPVI TA + + + CE ++K + +E + + + Sbjct: 972 EFLESLRLKPEFRDIPVIINTAKDLTQKDYQKLNLKCEKILNKSLVHPHDLLEELSEIL 1030 >gi|298291496|ref|YP_003693435.1| response regulator receiver protein [Starkeya novella DSM 506] gi|296928007|gb|ADH88816.1| response regulator receiver protein [Starkeya novella DSM 506] Length = 123 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 81/123 (65%), Positives = 107/123 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY + TR+G+EA++LAR+H+PD+I+MDIQL E+S Sbjct: 1 MSKTVLIVEDNELNMKLFNDLLEAHGYSTVGTRSGVEAMDLARRHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ +K D EL+ IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+S F+ET+++++ Sbjct: 61 GLDVTRALKADPELKAIPVIAVTAFAMKGDEERIREGGCEAYLSKPISVSKFLETVRQFL 120 Query: 121 GEA 123 A Sbjct: 121 PAA 123 >gi|312113933|ref|YP_004011529.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311219062|gb|ADP70430.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 239 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D++ L + G + EA + D++++DI + G Sbjct: 4 STHILVVDDHKDIRDLLAKFLVKHGMRVTVAADAAEARRHLKAGAFDLLVLDIMMPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + I++ + P+I +TA A D + G + Y++KP + + I+ I Sbjct: 64 ISLCRDIRDSNSA---PIIFLTAVAEDTDRIIGLELGADDYVTKPFNPRELLARIRAVIR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1] Length = 2151 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +KV++V+D+ N+ ++E G + E LE + ++++MD+ + E+ G Sbjct: 2016 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLEQLEKAADIELVLMDVMMPEMDG 2075 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + I+ +P++A+TA AMKGD E+ + G YI+KP+ + + ++ ++ Sbjct: 2076 YQAMRAIRRMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2134 Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ + +L+ + + EAL + + D +++D+ L ++ G E+ Sbjct: 1873 LIVEDDPVHRQALLELLGSEDVETVAVGTAAEALAALAERRFDCMVLDLGLPDMPGAELI 1932 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++I E P+I T + +E + EA + K S +E Sbjct: 1933 RRIHEAHGAGGPPLIVYTGRELSRAQETELRRVAEAIVVKDAQSPERLLE 1982 Score = 52.1 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 18 FRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 R + +G+ L + AL+ R +P + +D+ L E++G + ++K D+ + + Sbjct: 1763 LRAAAQGTGFKVLVSTEVEGALDAVRNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRAL 1822 Query: 78 PVIAVTAFAMKGDEERIRKGGCEAYI 103 PV V+ ++ ER G ++ Sbjct: 1823 PVYTVS---VEDHRERSLNLGAIGHL 1845 >gi|198277651|ref|ZP_03210182.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135] gi|198269348|gb|EDY93618.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135] Length = 1021 Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN+ + L++ Y ++ NG E + A ++ PDV++ D+ + + G+E Sbjct: 772 VLVIDDNQDVRDYVKMLLQDK-YTVIEAVNGQEGIRQAMKYVPDVVVCDVMMPVMDGIEC 830 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + + IPV+ +TA+AM + G ++Y++KP + + + I+ I Sbjct: 831 CKRLKSELQTSHIPVLMLTAYAMDEQRIQGYDSGADSYLTKPFNAKLLLARIRNLI 886 >gi|262409249|ref|ZP_06085793.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294645954|ref|ZP_06723622.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806056|ref|ZP_06764914.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262352996|gb|EEZ02092.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292638699|gb|EFF57049.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446739|gb|EFG15348.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1341 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+++TS Y NG +AL + R+ PD++I DI + E+SG Sbjct: 1077 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1135 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK D E+ IPV+ +TA + + + G +AYI+KP S+ I TIK + Sbjct: 1136 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1195 Query: 122 EA 123 A Sbjct: 1196 RA 1197 >gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165] gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165] Length = 242 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I ED+ R L+ GY ++ NG ALE+ R D++I+DI + +SGL Sbjct: 4 QTILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVFRPE-VDLVILDIMMPGMSGL 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ L +P++ +TA + + D+ G + Y+ KP S + +K + Sbjct: 63 RVCEELRK---LSTVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLRR 119 >gi|237713842|ref|ZP_04544323.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445998|gb|EEO51789.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1330 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+++TS Y NG +AL + R+ PD++I DI + E+SG Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1124 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK D E+ IPV+ +TA + + + G +AYI+KP S+ I TIK + Sbjct: 1125 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1184 Query: 122 EA 123 A Sbjct: 1185 RA 1186 >gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115] gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115] Length = 234 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M +K V+++ED + + + GY +G+ L R+ PD++I+D+ L Sbjct: 10 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 69 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++I++ P+I +TA D+ G + Y+ KP S+ + ++ Sbjct: 70 LDGLEVARRIRK---TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRA 126 Query: 119 YIGE 122 ++ Sbjct: 127 HLRR 130 >gi|221200233|ref|ZP_03573275.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2M] gi|221205914|ref|ZP_03578928.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2] gi|221209274|ref|ZP_03582255.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD1] gi|221169962|gb|EEE02428.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD1] gi|221173926|gb|EEE06359.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2] gi|221179574|gb|EEE11979.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans CGD2M] Length = 246 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E + PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRSVLDDGAPDLIVLDLMLPGEDGLA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|170691903|ref|ZP_02883067.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170143187|gb|EDT11351.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 241 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans TK24] Length = 233 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+ + ++ G+ +G L +H+PD++++D+ L +SG Sbjct: 1 MARVLLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERHRPDLVLLDLMLPNMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+E + IP+I ++A + D + G + YI KP + I+ + Sbjct: 61 LEVCRRIRES---KRIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330982197|gb|EGH80300.1| response regulator receiver [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 1031 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 907 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 966 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 967 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1026 Query: 122 E 122 + Sbjct: 1027 K 1027 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 641 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 700 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 701 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 752 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 761 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 820 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 821 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 851 >gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ + +G ALE + D++++D+ L +SG Sbjct: 1 MTNILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ +PVI VT+ + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRA---TSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 676 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E K+ ++ YI G +L D+II+D+ L E+ G++ Sbjct: 2 RILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGIK 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ +PV+ VTA ++ G + YI+KP L + ++ + Sbjct: 62 FCQQLRAQEYT--LPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRR 118 Score = 105 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 59/121 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++ V+D+ ++ + + Y + +E + + PD++++DI + + +G+ Sbjct: 539 RKILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGI 598 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ + +P++ TA A ++ K G + I K +S + + ++ + Sbjct: 599 ELCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKR 658 Query: 123 A 123 + Sbjct: 659 S 659 >gi|218439228|ref|YP_002377557.1| AraC family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171956|gb|ACK70689.1| two component transcriptional regulator, AraC family [Cyanothece sp. PCC 7424] Length = 265 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 69/121 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED++LN L ++ +E+ G+ + +G + L+ AR+ PD+I+ DI + E+ G Sbjct: 1 MTRILLIEDDQLNCTLLQECLESEGFHIISAEDGFKGLQQAREFLPDLILCDIIMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + Q+++D IP I +TA K + R + G + Y++KP++ + ++ + Sbjct: 61 YSVLLQLRQDPSTAFIPFIFLTAKTSKAEYRRGMELGADDYLTKPLTAHEVIAAVETRLE 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 219 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++ ED+ ++ D ++ GY+ ++ +G +A+E +K D++I+DI + ++ Sbjct: 1 MDKKILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ SE + +P+I +TA + D + K + Y++KP+SL I M +K + Sbjct: 61 GWDVCREIR--SERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|153873243|ref|ZP_02001890.1| Response regulator receiver protein [Beggiatoa sp. PS] gi|152070291|gb|EDN68110.1| Response regulator receiver protein [Beggiatoa sp. PS] Length = 716 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++E + NG +AL+L + +++MDI + E+ G Sbjct: 596 KKVLIVDDDSRNVFALATVLENYDMEVIFADNGKKALKLLEEQDNIAIVLMDIMMPEMDG 655 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + +++P+IA+TA AMKGD+ + + G Y++KP+ + ++ ++ Sbjct: 656 YEAMRKIRAQARFRQLPIIALTAKAMKGDKAKCIEAGANDYLAKPVDTDKLISLMRVWL 714 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED +L DL + + + L +G +L+LA Q+KP II+D+ L ++ G + Sbjct: 331 LIIEDERKFSRLLMDLAQENAFKCLVAEDGETSLQLAEQYKPHAIILDVGLPQVDGWTVM 390 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYI 120 +++K++ + + IPV ++A + +K G Y+ KP+ ++ E IK++I Sbjct: 391 ERLKDNQDTRHIPVYFISASDQ---VQEAKKMGAIGYLLKPVGMAELEEAFQNIKQFI 445 Score = 48.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+++ D + + DL+ + T AL + + D II+D+ +++ +G+ Sbjct: 450 KNVLVITDEKQYHQKIFDLLRSEEIQITPTITMAIALRCLHKTRFDCIILDVDIEQGTGI 509 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI-FMETI 116 +Q+++ L +IP+I T + EE + E + K + + ++ + Sbjct: 510 NFLEQMEKRESLHQIPLIVYTERDLTTTEEALLLQCAENLLIKSVRTAERLLDEV 564 >gi|119488494|ref|ZP_01621667.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455305|gb|EAW36445.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 396 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++E Y + NG +AL+ PD+I++DI + E++G +I Sbjct: 11 ILIVDDTPENLRLLSSMLEEQSYKVRKATNGKQALKAIEAQSPDLILLDILMPEMNGYQI 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K ++IP+I ++A D+ G YI+KP + + ++ I Sbjct: 71 AKHLKSLDSTRDIPIIFLSALNDTMDKVFAFDVGGVDYITKPFQVQEVLVRVRTQI 126 >gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 254 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQE 58 +++++VED++ + + + G+ +G AL L D+I++D+ L Sbjct: 24 TRRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPG 83 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL++ ++++ + P++ ++A + D + G + Y+ KP L + + Sbjct: 84 LGGLDLCRELRRLNNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRA 141 Query: 119 YIGEA 123 + + Sbjct: 142 LLRRS 146 >gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 234 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNT--TYVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60] Length = 1520 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 ++++VEDN N ++ R+L+E G G EA++ R D+++MD+Q+ + G Sbjct: 1164 RILVVEDNLNNQQIARELLEDEGASITLAAQGQEAVDRLRASPQGFDLVLMDLQMPVMDG 1223 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ I+ L+ +P+IA+TA AM D + G +I KP +L + I+K++ Sbjct: 1224 INATQYIRRHLGLRSLPIIAMTANAMASDRQECLAAGMNDHIGKPFNLRELIHAIQKHL 1282 Score = 95.2 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 V++V+DN L + + T G+ +G +AL + DV+ +D + Sbjct: 1011 HVLMVDDNPTACTLLQRMGTTLGWEVDTAGSGEQALARIAEQQRAGTHYDVMFVDWLMPG 1070 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEER-IRKGGC-EAYISKPISLSIFMET 115 + G + +++ + +P ++ VTA +R + G + ++ KP++ I +ET Sbjct: 1071 LDGWQTIQRLHQQIPDTSMPLLVMVTANDRDCLLQRSSEEQGVLDGFLVKPVTPQILLET 1130 Query: 116 IKKYI 120 + + Sbjct: 1131 VLSAL 1135 >gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp. subtilis str. 168] gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp. subtilis str. 168] gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp. subtilis str. SMY] gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yrkP gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis] gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp. subtilis str. 168] Length = 231 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED+E L + + +GY L+ ++G AL+L D++I+DI + IS Sbjct: 1 MAYRILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDSL-DLVILDIMMPGIS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E + I++ S +P++ +TA + D+ G + Y++KP S + + Sbjct: 60 GIETCQHIRKSS---NVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|224537021|ref|ZP_03677560.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM 14838] gi|224521329|gb|EEF90434.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM 14838] Length = 1332 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DNE + L + + T Y L NG +ALE+ R D+++ D + E+ G+E Sbjct: 1082 TILLVDDNEEFLLLMKRKLATH-YNILTATNGKKALEIVRSEDVDLMVSDYMMPEMDGIE 1140 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K+D IPV+ +TA + D+ R G Y++KP + + I + Sbjct: 1141 LCATMKQDINTSHIPVLMLTAKSSVEDQVRCFNAGANGYLTKPFDMKMLNARIDNLM 1197 >gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G E L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 229 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E K ++ GY A +G L+LA ++ DVI++D+ L E++G Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E +++ P+I +TA D G + Y+ KP ++ + I+ + Sbjct: 61 LEVARRLRE---VKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++I +D+ L + ++ Y + +NG+EAL+ + K DV+I+D+ + + G Sbjct: 19 RRILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVMMPYVDGF 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+E S ++P+I +TA D + G + YI+KP + + + + Sbjct: 79 EACQRIRERS---DVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRR 135 >gi|16126701|ref|NP_421265.1| response regulator PleD [Caulobacter crescentus CB15] gi|221235482|ref|YP_002517919.1| response regulator PleD [Caulobacter crescentus NA1000] gi|60390590|sp|Q9A5I5|PLED_CAUCR RecName: Full=Response regulator PleD; AltName: Full=Stalked cell differentiation-controlling protein; Includes: RecName: Full=Diguanylate cyclase; Short=DGC; AltName: Full=Diguanylate kinase gi|302425180|sp|B8GZM2|PLED_CAUCN RecName: Full=Response regulator PleD; AltName: Full=Stalked cell differentiation-controlling protein; Includes: RecName: Full=Diguanylate cyclase; Short=DGC; AltName: Full=Diguanylate kinase gi|13424011|gb|AAK24433.1| stalked-cell differentiation controlling protein [Caulobacter crescentus CB15] gi|220964655|gb|ACL96011.1| GGDEF/response regulator protein pleD [Caulobacter crescentus NA1000] Length = 454 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y +G AL +A + PD+I++D+ + + Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++K+D + IPV+ +TA +GD + + G +++KPI + ++ Sbjct: 61 GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 75.2 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+DNE + + + + + +A +++ D++I++ + GL Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T ++ + +++PV+A+ +G + + G +S+PI +K I Sbjct: 213 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271 >gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 66/124 (53%), Gaps = 5/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VED++ +L + + T Y + +G+E + + D+I++D+ + + Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E++K I+ S +P+I +TA + D+ + G + YI+KP S + + ++ Sbjct: 61 NGFEVSKMIRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAV 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] Length = 230 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D + ++ G+ NG E L A + D+ I+DI L + G E+ Sbjct: 8 ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIMLPGMDGYEL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + PV+ ++A + D+ + G + Y++KP + + ++ + Sbjct: 68 CRRLRARTAS---PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122 >gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273] gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272] gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271] gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803] gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803] gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273] Length = 230 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59 +KKV+IVED ++ + GY + +G L+L ++H ++I+DI L + Sbjct: 5 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+++S +P+I +TA + + D + G + Y++KP SI + K+ Sbjct: 65 DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121 >gi|189467281|ref|ZP_03016066.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM 17393] gi|189435545|gb|EDV04530.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM 17393] Length = 1330 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+ +T GY NG EAL + R+ PD++I DI + E+ G Sbjct: 1078 QRILIVEDNDDLRNYLIDMFKT-GYNVQSCPNGKEALVIVREFDPDLVISDIMMPEMGGD 1136 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ IK D E+ IPVI +TA + + + G +AYI+KP S+ I T+K + Sbjct: 1137 ELCSVIKGDLEISHIPVILLTALGDEKNMLEGLEIGADAYITKPFSVGILKATVKNIL 1194 >gi|172035362|ref|YP_001801863.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171696816|gb|ACB49797.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 121 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 72/121 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V++VED+ ++ +++ +G+ + +G++ALE ++ PD+I++DI + +++G Sbjct: 1 MRAVLLVEDSPAQQRMIATILKKNGWQVIIAEDGIQALETIKEASPDLIVLDIVMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++IK + Q +P++ ++ + D K G +AYI+KP + TI++ + Sbjct: 61 YEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYIAKPFEDIELIGTIQQLLR 120 Query: 122 E 122 + Sbjct: 121 Q 121 >gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp. subtilis str. SMY] Length = 293 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + + + + ++E GY L + EA+ + + +K D+I++D+ + +SG E Sbjct: 62 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 121 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E + P+ +TA + D+ G + YI+KP + I+ ++ Sbjct: 122 ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 177 >gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 242 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + +E G+ +G + E A+ PD+II DI + +G Sbjct: 16 KILLVDDEPGLRTAVKTFLEDEGFEISIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYA 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ED +L PVI +TA M D + G + YI+KP +K I Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYIAKPFDPDELSARVKNVINR 134 >gi|94264235|ref|ZP_01288030.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|94266209|ref|ZP_01289918.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453216|gb|EAT03674.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455346|gb|EAT05550.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 403 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E+N + + GY +G +AL+ D++++D+ + + GL Sbjct: 7 RILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPCDLVLLDVMMPVLDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++++ D +PVI TA D + G Y++KPI + + + Sbjct: 67 ALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPIDFPVLQARMDTQLR 124 >gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 1172 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN ++ S + + R+G E E A H P VII D+ + +SGL+ Sbjct: 815 TILVVDDNPDLRNYVSRILRKSNFNVVLARDGAEGFEFAEIHHPHVIITDLMMPVVSGLD 874 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K I+E+ +L+ P+I +TA A + + G +AY+SKP + + ++ + Sbjct: 875 LIKMIREEKQLRGTPIILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLL 931 Score = 89.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 5/117 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D N+ L Y L+ G EALE+ + + VII D ++ ++SG Sbjct: 11 KILVVDDEPYNLDLLYRTF-FQNYKVLRAEGGSEALEVLEKSGEVAVIISDQRMPKMSGT 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118 E + I +T + D G Y++KP +K+ Sbjct: 70 EFLSL--TAEKYPNTIRIILTGYTDVEDLVEAINSGKVFKYVTKPWDDHELKALVKQ 124 >gi|298479885|ref|ZP_06998084.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298273694|gb|EFI15256.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1372 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + L NG E + A PD+++ DI + + G+ + Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227 >gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 237 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I++D+ +L + + GY+ +G E ++ A +++D+ L ++ Sbjct: 1 MAKRILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPTLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+++++ +PV+ +TA + D + G + Y+ KP + + ++ Sbjct: 61 GFDVLRRIRQNTQ---VPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQ 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++ED + + GY + +G + ++A+++ D+I++DI L ++ Sbjct: 1 MKGKILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI ++++E S +IPVI +TA D+ G + Y++KP + + I+ + Sbjct: 61 GIEILRRLRESS---DIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVAL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|237721900|ref|ZP_04552381.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448769|gb|EEO54560.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1372 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + L NG E + A PD+++ DI + + G+ + Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227 >gi|227821648|ref|YP_002825618.1| putative response regulator in two-component regulatory system [Sinorhizobium fredii NGR234] gi|227340647|gb|ACP24865.1| putative response regulator in two-component regulatory system [Sinorhizobium fredii NGR234] Length = 149 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 96/123 (78%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+VMIVEDNELNMKLFRDLIE SGY +QTRNGMEALELAR+H+PD+I+MDIQL E+S Sbjct: 27 MPKQVMIVEDNELNMKLFRDLIEASGYATIQTRNGMEALELARKHRPDLILMDIQLPEVS 86 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ETIK Y+ Sbjct: 87 GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 146 Query: 121 GEA 123 G+A Sbjct: 147 GDA 149 >gi|160884678|ref|ZP_02065681.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483] gi|156109713|gb|EDO11458.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483] Length = 1372 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + L NG E + A PD+++ DI + + G+ + Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227 >gi|94263690|ref|ZP_01287498.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] gi|93455889|gb|EAT06048.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1] Length = 303 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++ V+D+ +N+K+ D++ Y + G +AL +A PD+I++DI + E+ G Sbjct: 8 ATILAVDDSPMNIKILHDILNQD-YRVIFATGGADALTIAADSLPDLILLDIMMPEMDGY 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++KED Q IP+I VTA + DE + G YI+KP++ ++ +K ++ Sbjct: 67 EVCHRLKEDPRTQRIPIIFVTAMTDQEDEAKGLDLGAIDYITKPVNQAVVKARVKNHL 124 >gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB] gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB] Length = 1028 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED +N ++ +L+ G A NG A+EL + D+++MD+Q+ E+ GL Sbjct: 909 RHLLVVEDEAINREIALELLGEFGITADTAENGRHAVELIKIQHYDLVLMDMQMPEMDGL 968 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ E +P+IA+TA A D ER K G ++SKP+ + +Y+ Sbjct: 969 EATRRIRALPEQNAVPIIAMTANAFAEDRERCIKAGMNDFLSKPVEPDDLKMLLLRYL 1026 >gi|332885780|gb|EGK06026.1| hypothetical protein HMPREF9456_02290 [Dysgonomonas mossii DSM 22836] Length = 1335 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I++D E + + + +G++ L++A PD+II D+ + + GL Sbjct: 1078 KILIIDDEEEIRDFLSQELGEL-FKVITAVDGVDGLQVAIDRLPDLIISDVMMPNMDGLN 1136 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K++K ++ + IP+I +T+ A D + G +AY+SKP ++ + TI I Sbjct: 1137 LLKRLKNNNNVSHIPIILLTSKAEYQDRIQGLDRGADAYLSKPFNIEELIVTINNLI 1193 >gi|237712214|ref|ZP_04542695.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] gi|237726360|ref|ZP_04556841.1| two-component system sensor histidine kinase [Bacteroides sp. D4] gi|229434886|gb|EEO44963.1| two-component system sensor histidine kinase [Bacteroides dorei 5_1_36/D4] gi|229453535|gb|EEO59256.1| two-component system sensor histidine kinase [Bacteroides sp. 9_1_42FAA] Length = 379 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + L+ + + NG EAL A +PD+I++D+ + E++G E Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K D E Q IP+I +TA D + K G +ISKP + + + Sbjct: 75 VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127 >gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM 16841] gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM 16841] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ +D + + + + GY + NG EALE+ ++ +++MDI + E+ G Sbjct: 1 MYRILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKEDIHLVLMDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E + +PVI +TA + D+ G + Y++KP + +K + Sbjct: 61 ITAMLKIRE---VSNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|212691339|ref|ZP_03299467.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855] gi|212666092|gb|EEB26664.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855] Length = 379 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + L+ + + NG EAL A +PD+I++D+ + E++G E Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K D E Q IP+I +TA D + K G +ISKP + + + Sbjct: 75 VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127 >gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 223 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 MIV+D++ +L ++ GY + NG+EAL + +PD+II+DI + E+ GL Sbjct: 1 MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIMMPEMDGLSFC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+++ S+ +P++ V+A D+ G + Y+SKP + +K + A Sbjct: 61 TQVRKSSQ---VPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRA 115 >gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 6/125 (4%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K+ V++V+D E ++ +++ Y L NG ALE ++ PD++I+D+ L Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G E+ + I+E ++P++ ++A D+ G + Y+ KP S +K Sbjct: 61 IDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKA 117 Query: 119 YIGEA 123 + + Sbjct: 118 LLRRS 122 >gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D+E +KL + + + +G EAL ++ D I++DI + ++ Sbjct: 1 MPKTILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALEENHIDFIVLDIVMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + I+ +P++ ++A D+ + G + Y++KP S+ + IK + Sbjct: 61 GLDVCRSIRNS---YNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHF 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|261253028|ref|ZP_05945601.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] gi|260936419|gb|EEX92408.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891] Length = 769 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 74/122 (60%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDN N + R++ + G NG+EALE+A+Q++ D+I MDI + ++ G+ Sbjct: 489 ARILVAEDNRANQLVIREMFKRVGSQIDIAENGLEALEMAQQYQYDLIFMDISMPKMDGM 548 Query: 63 EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ ED IP+IA+TA ++ GD+E+ G + Y+SKP+ LS ++ I ++ Sbjct: 549 TACRAIRALEDEATATIPIIALTAHSLAGDKEKFLASGMDDYLSKPLRLSQLVDKINLFL 608 Query: 121 GE 122 E Sbjct: 609 DE 610 >gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 70/124 (56%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+++ ++I++D++ ++L + GY + +G EAL + ++ D++I+DI + + Sbjct: 1 MMERNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIMMPKR 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GLE+ +Q++E++ +P++ ++A A D+ G + Y+ KP + + +K Sbjct: 61 NGLEVCQQVREEN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|218889743|ref|YP_002438607.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58] gi|218769966|emb|CAW25728.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58] Length = 795 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N + R ++ GY NG EALEL + +PD +++D Q+ + G Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W] gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI] gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W] gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 230 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED E L +D +E SG+ G LE A D+II+D+ L E+ G Sbjct: 1 MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I +Q++++ + IP+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHME 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254242660|ref|ZP_04935982.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192] gi|126196038|gb|EAZ60101.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192] Length = 795 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N + R ++ GY NG EALEL + +PD +++D Q+ + G Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099] gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family [Mesorhizobium opportunistum WSM2075] gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099] gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family [Mesorhizobium opportunistum WSM2075] gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++M+VED E L R +E+ GY G EA +++ PD++++D + +SG+E Sbjct: 5 RIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAVSGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ E + +P+I +TA + D R G + Y+ KP S FM +K + A Sbjct: 65 LCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRRA 124 >gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp. Ellin185] gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp. Ellin185] Length = 225 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++V+D+ + R ++ G G++AL PD++++D+ L ++ Sbjct: 1 MSERVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTCADAMPDLVVLDLGLPDLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ +Q+++ S +PVI ++A D+ G + Y++KP + M ++ + Sbjct: 61 GVDVLRQLRQSS---SVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAAL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++++ED L RD G+ ++ +G E L +K D++I+DI + ++ Sbjct: 5 MPKNILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIMMPKVD 64 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + + I++ + +PVI +TA + D+ + G + YI+KP S I + +K + Sbjct: 65 GITVLEMIRK---VSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALL 121 Query: 121 GE 122 Sbjct: 122 KR 123 >gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces ambofaciens ATCC 23877] Length = 1331 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG +E H +++MD+ + E+ G Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIETLIDHPEVALVLMDVMMPEMDG 1270 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ E+P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329 Score = 39.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 46 KPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG----GCEA 101 +++++ +++ + ++ DS L +PV+ + E + G Sbjct: 1104 PCHCVVLELGMRDDEASRFLRALRGDSALASVPVLVHSGHRADAALEESLRSGTQDGALE 1163 Query: 102 YISKPISLSIFMETIKKYI 120 ++S SL E I ++ Sbjct: 1164 FLS---SLDELRERIALHL 1179 >gi|46203763|ref|ZP_00051012.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 126 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 83/122 (68%), Positives = 107/122 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY L+T NG+EA+ELAR H P++I+MDIQL E+S Sbjct: 1 MKKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARAHHPNLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D +L++IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++KYI Sbjct: 61 GLEVTKWLKDDDDLRDIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRKYI 120 Query: 121 GE 122 G+ Sbjct: 121 GD 122 >gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612] gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K V++VED + +++ + Y ++ R+G EALEL PD+I++D+ L + Sbjct: 1 MSHKALVLLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELFTSRCPDLILLDLGLPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+E+ K I+ IP+I V+A + ++ G + YI+KP S + I+ Sbjct: 61 MDGIEVLKTIR---GWSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRT 117 Query: 119 YIG 121 + Sbjct: 118 AMR 120 >gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus ATCC 53653] gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ +G EA+ R+ +PD +++D+ L ++ GL Sbjct: 66 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGLT 125 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ EL E+PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 126 VLGRLRR--ELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRS 183 >gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1331 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG +E H +++MD+ + E+ G Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ E+P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329 Score = 38.2 bits (89), Expect = 0.45, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 11/81 (13%) Query: 46 KPDVIIMDIQLQEISGL--EITKQIKEDSELQEIPVIAVTAF---AMKGDEERIRKGGCE 100 +++++ + G + ++ DS L +PV+ + A ++ R R G Sbjct: 1104 PCHCVVLELGMP--DGEASRFLRALRGDSALASVPVLVHSGHRADAAVAEDLRSRAAGGT 1161 Query: 101 -AYISKPISLSIFMETIKKYI 120 +++ L E I ++ Sbjct: 1162 LEFLA---GLDELRERIALHL 1179 >gi|107103492|ref|ZP_01367410.1| hypothetical protein PaerPA_01004562 [Pseudomonas aeruginosa PACS2] Length = 777 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N + R ++ GY NG EALEL + +PD +++D Q+ + G Sbjct: 651 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 710 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 711 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 767 >gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1311 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ +DN L+ G+ +G AL A+ H P +++ D+ + + G Sbjct: 639 SARILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDG 698 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K + Q +PVI ++A A + + G + Y+ KP S + + + Sbjct: 699 FGLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARL 757 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 60/110 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ D +E G+ R+G+E +E +PDV ++D+ L I G Sbjct: 1164 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDGY 1223 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 E+ ++++ +++ ++A+T + + ++ G + +++KPI++ Sbjct: 1224 EVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1273 >gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1650 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 70/121 (57%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +V++V+D+E+N ++ ++ G +G +AL H D+++MD+Q+ + G Sbjct: 1304 RVLVVDDSEINQEVASGILAKHGAQVSVASDGEDALVWLDAHPEAVDIVLMDVQMPRLDG 1363 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+++++D +++PVIA+TA A + +E R+ G +I+KP ++ + I+++ G Sbjct: 1364 YAATRRLRQDPRQRDLPVIALTAGAFQSMQEAAREAGMNDFIAKPFDVAELIACIRQWTG 1423 Query: 122 E 122 Sbjct: 1424 R 1424 >gi|260642486|ref|ZP_05416052.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260621843|gb|EEX44714.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1459 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN +++ + Y L+ NG E L+ A+Q+ PD+II D+ + + GL++ Sbjct: 1198 ILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYAQQYIPDLIISDVMMPIMDGLDM 1256 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K IK D IP+I ++A + D + G + YI+KP S + I + + Sbjct: 1257 VKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTKILSLLRQ 1314 >gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D ++L + GY + NG++AL + + K ++I+DI + I GL++ Sbjct: 4 VLIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+++ IP+I V+A + D+ + G + YI KP S + +K I Sbjct: 64 CMKIRKE---YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118 >gi|160896640|ref|YP_001562222.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] gi|160362224|gb|ABX33837.1| response regulator receiver modulated diguanylate cyclase [Delftia acidovorans SPH-1] Length = 316 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++V+D N + +I+ L G EAL LA QH+PD+I++DI++ + G Sbjct: 21 QKVLVVDDVPDNATVICQVIKDL-CGPLVAYTGEEALALAHQHQPDLILLDIRMPGMDGF 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D + IP+I +TA EE G +++KP ++ ++ ++ Sbjct: 80 EVCRRLKADLQTAHIPIIFLTALTEPHCEELGLNLGAVDFVTKPFRPAVLKARVRTHL 137 >gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca DW4/3-1] gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1171 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 72/126 (57%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56 +++++VED+ N+ ++E G RNG EALE + D+++MDI + Sbjct: 1046 RRILVVEDDVRNVFALSSVLEPRGAKVEIARNGREALEALTRSLAQPAKSVDLVLMDIMM 1105 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G+ ++I++ SE ++P+IA+TA AM+ D+E+ G YI+KP+ + + I Sbjct: 1106 PEMDGITAMREIRKRSEWSKLPIIALTAKAMRDDQEKCLAAGANDYIAKPLDVEKLLSLI 1165 Query: 117 KKYIGE 122 + ++ + Sbjct: 1166 RVWMPK 1171 Score = 82.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 53/94 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+++ED+E + + L+E+ + EAL+ +QH D ++MD+ L ++SG Sbjct: 900 RRVLVLEDDERQRESLQKLLESEDVQIVGVATAGEALQQLQQHTFDCMVMDLHLPDLSGD 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 E+ +++ ++ PVI T ++ DEE+ + Sbjct: 960 ELLEKMALQEDVSFPPVIVYTGHSLSRDEEQRLR 993 Score = 82.9 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 10/125 (8%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED+ + RDL G++ + T G AL A ++P I++D+ L + SGL + Sbjct: 780 ILVAEDDMRFAAILRDLARELGFLCIVTGTGGAALAAALSYRPSAILLDMNLPDHSGLAV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY----- 119 Q+K +++ + IPV V+ + + G Y KP+ +E +K Sbjct: 840 LDQLKRNAKTRHIPVHVVS---VADYSREALELGAVGYALKPVKREQLVEAFRKLETKFS 896 Query: 120 --IGE 122 + Sbjct: 897 QGLRR 901 >gi|114769510|ref|ZP_01447136.1| Response regulator [alpha proteobacterium HTCC2255] gi|114550427|gb|EAU53308.1| Response regulator [alpha proteobacterium HTCC2255] Length = 195 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED M+L + GY L+ +G + L L +++ D++++D L ISGLE+ Sbjct: 11 ILIVEDEPSQMELLSFNLNAEGYDVLKAEDGEKGLLLFKENNIDLVLLDWMLPNISGLEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +Q++ + + +I +TA + D+ R G + YI KP S+ + ++ I Sbjct: 71 CRQMRRSKDSSDCHLIMLTARGEEEDKVRGLDMGADDYIVKPYSIKELLARVRSGIR 127 >gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni ACN14a] Length = 1340 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ +++ G + +G ++ R + D+++MD+ + E+ G Sbjct: 1215 RTVLVVDDDVRNVFAITSILDLYGLRVIHAADGRMGIDALRSNPGIDLVLMDVMMPEMDG 1274 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T I+ + ++P+IAVTA AM D ++ G Y++KP+ + + I+ Sbjct: 1275 YATTTAIRAMPQFADLPIIAVTAKAMPDDRQKCLDAGATDYVTKPVDIEELLACIRA 1331 >gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED + ++ + Y + + A++ + KP +I++D L S Sbjct: 1 MNEKILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKLDE-KPKLILLDWMLPGRS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ + +K+ E +IP++ +TA + + D G + Y++KP S + + I+ + Sbjct: 60 GIQFIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|315921776|ref|ZP_07918016.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313695651|gb|EFS32486.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1315 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + + +G+EAL+L R H PD+I+ D+ + ++G E+ Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP+I +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|299146852|ref|ZP_07039920.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298517343|gb|EFI41224.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1315 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + + +G+EAL+L R H PD+I+ D+ + ++G E+ Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP+I +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|260173505|ref|ZP_05759917.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1273 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + + +G+EAL+L R H PD+I+ D+ + ++G E+ Sbjct: 1018 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1077 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP+I +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1078 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1137 Query: 123 A 123 + Sbjct: 1138 S 1138 >gi|237723233|ref|ZP_04553714.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447755|gb|EEO53546.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1315 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + + +G+EAL+L R H PD+I+ D+ + ++G E+ Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP+I +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 234 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL K D++I+DI + + G + Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 73 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 >gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] Length = 235 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D KL RD +E GY L+ +GMEA+++ + +II+D+ + + G Sbjct: 14 KILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEKDIALIILDVMMPHMDGW 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S+ +P+I +TA + + DE + + G + YISKP S I + + + Sbjct: 74 QTCREIRKESK---VPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRR 130 >gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1492 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ EDN N L L+E GY + NG EAL D+I+MD Q+ + G Sbjct: 1368 ARILVAEDNIDNRDLLVMLLEDIGYDNVVTVENGQEALNKINAELFDLILMDCQMPIVDG 1427 Query: 62 LEITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T++++ ++S IPVIA+TA AMKGD ++ G YI+KP + + K+ Sbjct: 1428 YEATRKLRKQNSRNSSIPVIAITANAMKGDRDKCLAAGMSDYITKPFASDDLERKLVKW 1486 >gi|171910558|ref|ZP_02926028.1| putative phytochrome sensor protein [Verrucomicrobium spinosum DSM 4136] Length = 472 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED + +E +G+ +G E + R+ PD+I++DI + +++G+ Sbjct: 33 ARILVVEDANIIALAMSYALEGAGFHVELAADGEECIVKVREDLPDLILLDIMMPKMNGI 92 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E K ++ D + +++PVI +A K + + + G Y+ KP + + + + +G Sbjct: 93 EALKILRADEKTKDLPVIVCSAKDFKTERQAAAELGALDYLIKPFNPADLVRKVSAALG 151 >gi|160886361|ref|ZP_02067364.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483] gi|293372788|ref|ZP_06619169.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|156108246|gb|EDO09991.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483] gi|292632297|gb|EFF50894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1315 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + + +G+EAL+L R H PD+I+ D+ + ++G E+ Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP+I +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1331 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG +E H +++MD+ + E+ G Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ E+P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329 Score = 37.8 bits (88), Expect = 0.45, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 11/81 (13%) Query: 46 KPDVIIMDIQLQEISGL--EITKQIKEDSELQEIPVIAVTAF---AMKGDEERIRKGGCE 100 +++++ + G + ++ DS L +PV+ + A ++ R R G Sbjct: 1104 PCHCVVLELGMP--DGEASRFLRALRGDSALASVPVLVHSGHRADAAVAEDLRSRAAGGT 1161 Query: 101 -AYISKPISLSIFMETIKKYI 120 +++ L E I ++ Sbjct: 1162 LEFLA---GLDELRERIALHL 1179 >gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL K D++I+DI + + G + Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 73 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 >gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.] Length = 1266 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 72/113 (63%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN N ++ ++E +G + NG EA++ R+ + D ++MDIQ+ + G E Sbjct: 919 RVLVAEDNITNQEIALAILEEAGLVVKIVNNGKEAVDAVRESQFDALLMDIQMPVMDGYE 978 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T+QI++D+E +++P+IA+TA AMKGDEE K G YI KP+S + + Sbjct: 979 ATRQIRKDAEFKDLPIIAMTAHAMKGDEEECLKAGMNGYIPKPVSQDMLFNVL 1031 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 V++V+D + + + ++E+ G+ + +L+ R+ + D+++MD + + Sbjct: 771 VLVVDDCKDSQNIMEKMLESFGFKVESISSAQASLQRLREDETRENPIDLVMMDWLMPGL 830 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G+E + I++D +L +P+I +TAF + K G +++KPI S + I Sbjct: 831 DGIEASSIIRDDLKL-NVPIIMMTAFGNETQMLYAEKVGVNGFLTKPICQSTLFDAI 886 >gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 246 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+++ + PD+I+MD+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ +PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQNGVA--VPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 232 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60 + KV+I+ED E ++ +G+ L+ G EAL + D+ ++D+ + + Sbjct: 1 MSKVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E +E I +I +TA + D+ G + ++SKP S + + I+ + Sbjct: 61 GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 + K+++V+D++ +L R +E +G ++ NG +AL L K D++I+DI + E+ Sbjct: 1 MAKILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ ++P++ +TA + + G + Y+ KP + + +K + Sbjct: 61 GWDLCRELR---RYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900] Length = 254 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + + P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQTNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + + ++ GY +NG + LELA D I++D+ L E++G Sbjct: 1 MSRILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ ++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 LEVCRRVRQ---VKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 224 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED ++ ++ GY Q NG +ALE + D++I+DI + E+ GL Sbjct: 2 KILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++E + +PV+ +TA D+ + G + Y+ KP S + ++ + + Sbjct: 62 LVHTLREKNVT--VPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRS 119 >gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] Length = 254 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + + P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|170693022|ref|ZP_02884183.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170142020|gb|EDT10187.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 246 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E +G NG + Q PD+I++D+ + GL Sbjct: 6 HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +PV+ +TA + D + G + Y+ KP ++ + I+ + A Sbjct: 66 LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 >gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G EAL++ ++ +++I+DI + + + Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 61 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|85860311|ref|YP_462513.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85723402|gb|ABC78345.1| response regulator receiver domain with sensory domain [Syntrophus aciditrophicus SB] Length = 596 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 62/116 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D + L+++ Y NG EALELA++ PD+I++D+ + + G E Sbjct: 19 RILIVDDLPQERWMLGALLKSYDYELSYATNGHEALELAKKINPDLILLDVMMPGMDGFE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + ++I++ + E+P++ VTA + + G + +ISKP + ++ Sbjct: 79 VCRRIRKTPLIAEVPIMMVTALNEAEVRRKGVEIGADDFISKPFDRAELQARVRNI 134 >gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396] gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 841 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 69/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ LN+ + +E+ GY L NG++AL++A +H+P +I++D+ + E++G E Sbjct: 23 TVLIVDDSPLNLDVAVACLESRGYRTLSAENGVQALQIAMEHQPSLILLDVMMPEMNGFE 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K+ S +IPVI +TA + ++ G Y++KP + + +I Sbjct: 83 TCRKLKKLSGCDDIPVIFMTALSDVKSKKAGFDAGGVDYVTKPFQVEELAARVHTHI 139 Score = 84.4 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ ++ + ++ Y L N +A E+ + + VI+ D+Q+ SG++ Sbjct: 720 VLVVDDDVNILRSIKRILRDEAYEVLVASNTEDAYEVLARREVAVIVSDLQMPGESGVQF 779 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETI 116 +IK I +T E G YISKP + +ET+ Sbjct: 780 FSKIKTMHPRSLR--ILLTGHGSSESLEGAINQGEIYRYISKPWDNAHLLETL 830 >gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437] Length = 237 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M++ ++ V+D+ + L R+ S + + G EAL++ D +I+DI L + Sbjct: 11 MMRTILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIMLPGL 70 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E ++I++ +P++ ++A + D+ + G + Y++KP S + +K + Sbjct: 71 DGMETCRRIRQQ---HTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAH 127 Query: 120 IGE 122 Sbjct: 128 FRR 130 >gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74] Length = 1963 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E +G L NG E +E+ QH V++MDI + E+ G Sbjct: 1843 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1902 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + ++K++ Sbjct: 1903 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 1961 >gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED L+E G+ + +G LE ++ D++++D+ L +SG Sbjct: 1 MTRILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ +S +P+I +TA + D+ + G + Y++KP S + I + Sbjct: 61 VEVCRELRRES---SVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295675889|ref|YP_003604413.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295435732|gb|ADG14902.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 241 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I+ED+ ++ + + GY +G L LA+ +PD++++D+ L + Sbjct: 1 MAEKIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I++ E+P++ ++A +GD+ + G + Y+ KP L + I + Sbjct: 61 GLEVVREIRKTD--PELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 227 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ ++ G+ ++GM A+ L +Q +P V+I+D+ + + G E Sbjct: 8 RILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVMMPGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K+ + + VI +TA D + G + Y+ KP S + I I Sbjct: 68 VCRMLKK---TENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIR 122 >gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE D++++D+ L + G Sbjct: 26 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDG 85 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 86 LEVARRLRSEGHT--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 143 Query: 122 E 122 Sbjct: 144 R 144 >gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82] gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82] gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 254 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + +IP+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQSNI--DIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 249 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L +E +GY G E AR + PD++I+D+ L + G Sbjct: 17 MPNILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLPGLDG 76 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + ++ DS +P++ +TA D+ + G + Y++KP + + ++ + Sbjct: 77 LQVCRLLRADSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 134 Query: 122 EA 123 + Sbjct: 135 RS 136 >gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED ++ ++ +D + GY L+ +G EAL + +++ +II+DI L E+ Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ S +P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWAVCRRIRKKS---NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLM 117 >gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D ++ + ++ Y G AL++A QH PD++I+D+ L ++ G Sbjct: 1 MTRVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHPPDLVILDLGLPDLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++ E P++ ++ D+ G + Y++KP + + ++ + Sbjct: 61 IEVIRGLR---GWTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate and phosphorylate sensor [Acinetobacter sp. ATCC 27244] gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter haemolyticus ATCC 19194] gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate and phosphorylate sensor [Acinetobacter sp. ATCC 27244] gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter haemolyticus ATCC 19194] Length = 236 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D L +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|330997905|ref|ZP_08321739.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569509|gb|EGG51279.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1370 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED++ + ++ + ++ R+G+E AR PD+I+ D+ + + G+ Sbjct: 1112 KKILVVEDHDEFRHFLVEQLQKD-FCVVEARDGVEGELAARTELPDLIVSDLMMPRMDGM 1170 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D + IP I +TA + + G ++YISKP + + I++ I + Sbjct: 1171 ELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIEQ 1230 >gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium 3_1_46FAA] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + + +E GY N EAL+ + PD++++DI + ++GL+ Sbjct: 6 KILIVDDEQSILDMLKLQLEFEGYSVYTAGNAAEALDKL-SYSPDIVLLDINMDGMNGLD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+ + P+I +TA + D+ G + YI+KP S++ + I ++ Sbjct: 65 LCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRR 120 >gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans TK24] Length = 1333 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG +E H +++MD+ + E+ G Sbjct: 1213 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1272 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ E+P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1273 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1331 Score = 37.8 bits (88), Expect = 0.47, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 11/81 (13%) Query: 46 KPDVIIMDIQLQEISGL--EITKQIKEDSELQEIPVIAVTAF---AMKGDEERIRKGGCE 100 +++++ + G + ++ DS L +PV+ + A ++ R R G Sbjct: 1106 PCHCVVLELGMP--DGEASRFLRALRGDSALASVPVLVHSGHRADAAVAEDLRSRAAGGT 1163 Query: 101 -AYISKPISLSIFMETIKKYI 120 +++ L E I ++ Sbjct: 1164 LEFLA---GLDELRERIALHL 1181 >gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E ++E G+ +G AL + D+I++D+ L +SG Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRTLRARS---TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 234 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 74 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKR 128 >gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1839 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G L G EA+ + + +++MDI + E+ G Sbjct: 1719 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEERSDIAIVLMDIMMPEMDG 1778 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E + I+ + + +P++A+TA AMKGD E+ + G Y++KP++ + ++ ++ Sbjct: 1779 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1838 Query: 122 E 122 Sbjct: 1839 R 1839 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ L +G+ L G +AL LAR++ P + +D+ L ++ G + Sbjct: 1454 LIVEDDPHYTRVLMQLARDTGFKVLTANRGADALALARRYHPTAVSLDVFLPDMLGWTVL 1513 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 +K+D + IPV VT + D G A++SKP ++ IK + Sbjct: 1514 SHLKQDPATRHIPVQIVT---LDEDRRHGLARGAFAFLSKPTRPEDLGSALQRIKSF 1567 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN L+ + G AL R+H D +++D++L ++SG Sbjct: 1573 RRLLIVEDNPAERLGVSTLLGHQDIDIVTAETGAGALAALREHAIDCVVLDLKLPDMSGF 1632 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++++ED L ++PV+ T A+ +E+ + + K + S ++ Sbjct: 1633 EVLERLREDDSLADLPVVVFTGRALSPEEDARLHALARSVVVKGVESPERLLD 1685 >gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED +L RD +E + + NG+ LE A + +I++D+ L ++ G Sbjct: 1 MSKILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLMLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI +QI+E ++IP+I VTA D+ R G + Y++KP S S + +K +I Sbjct: 61 FEICRQIREK---KDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254236867|ref|ZP_04930190.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719] gi|313109414|ref|ZP_07795374.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016] gi|126168798|gb|EAZ54309.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719] gi|310881876|gb|EFQ40470.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016] Length = 795 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N + R ++ GY NG EALEL + +PD +++D Q+ + G Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|15599169|ref|NP_252663.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1] gi|9950164|gb|AAG07361.1|AE004815_5 Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1] Length = 795 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N + R ++ GY NG EALEL + +PD +++D Q+ + G Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 728 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E ++ G+ NG +AL ++ D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K ++ S +PVI VTA + D+ + G + Y++KP S + ++ + Sbjct: 61 TDVCKALRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18] gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 233 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D++ ++ ++ G+ A+ NG A E + PD++++D+ L ++G+E Sbjct: 8 TILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLDLMLPGMNGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +QI+ S +P+I +TA + D + + G + YI+KP + + I+ + Sbjct: 68 VCQQIRRSS---NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLR 122 >gi|153870115|ref|ZP_01999582.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] gi|152073419|gb|EDN70418.1| adenylate/guanylate cyclase [Beggiatoa sp. PS] Length = 396 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 V+IV+D+ +N+++ + + Y + G +AL+ +I++DI + ++SG Sbjct: 251 HVLIVDDDPINLQILENQLRVENYAITRATTGHDALKALESGIPFAIILLDIMMPKMSGF 310 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + I++ ++P+I +TA D + + G Y++KP S + IK +I Sbjct: 311 EVCQIIRQTYPANQLPIIMLTAKNQVSDLVQGMQAGANDYLTKPFSKGELITRIKTHI 368 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB [Herminiimonas arsenicoxydans] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED ++L ++ +G+ + EA + +Q P +I++D L + SGL Sbjct: 7 TILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLR 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+ D + E+P+I +TA +M+ D+ G + Y++KP S I + Sbjct: 67 LLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125 >gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 227 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ ++ G+ ++G A+ L +Q +P V+I+D+ + + G E Sbjct: 8 RVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMMPGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K+ + VI +TA D + G + Y+ KP S + I + Sbjct: 68 VCRMLKKME---NVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVR 122 >gi|332885682|gb|EGK05928.1| hypothetical protein HMPREF9456_02192 [Dysgonomonas mossii DSM 22836] Length = 377 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+ L + L++ G+ + +G A+E+ R+ PD+I++DI + + G E Sbjct: 9 TILVVDDVMTNVLLLQVLLDKEGFNVVTANDGQAAIEIIRKDVPDLILLDINMPNMDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K+ S +EIPVI +TA + + G YI+KP + M I + Sbjct: 69 VIREVKKYSLYREIPVIFLTAMNDVDSIVKGFRLGGSDYITKPFNKEELMARIVHQL 125 >gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 223 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + ++ ++ + Y +G +AL+ + D+II DI + +I G E Sbjct: 2 KILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + KQ++ + PVI +TA D+ G + YI KP + I+ + Sbjct: 62 LIKQLR--VKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRR 118 >gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEI 59 ++KV+++ED E + + +E +GY L NG LE + D+ I++DI L +I Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG + K I+E S+ +PV+ +TA + D+ + G + Y+ KP S + +K Sbjct: 61 SGWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAI 117 Query: 120 IGE 122 + Sbjct: 118 LSR 120 >gi|307728990|ref|YP_003906214.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583525|gb|ADN56923.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 241 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 235 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED+E + ++ +E GY + G E LE +++K + ++DI L E+ Sbjct: 1 MKEKLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+ +E +IP++ ++A D+ + K G + YI+KP SL+ ++ ++ Sbjct: 61 GFTLCKNIRWINE--DIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase [Jannaschia sp. CCS1] gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase [Jannaschia sp. CCS1] Length = 464 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 69/121 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++V+D N + + + + Y Q NG AL+ AR+ KPD+I++D+ + ++S Sbjct: 1 MVGRILVVDDVATNRIVMKVKLTAACYSVDQAENGAAALKAARETKPDLILLDVMMPDMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + +K D E +IPV+ +TA + + + G + +++KP+ + ++ + Sbjct: 61 GLDVCRALKADPETADIPVVLITALFDQAAKMDGLEAGADDFLTKPVEEVTLLARVRSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 50.5 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 1/79 (1%) Query: 45 HKPDVIIMDIQLQEIS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI 103 + PDV ++ + L + + GL + ++ + ++ + G + Sbjct: 199 NDPDVFVISVDLAQRNEGLRLLSDLRSRPGTRHSAIVMILPEGDSERAAIALDLGANDVL 258 Query: 104 SKPISLSIFMETIKKYIGE 122 P I + Sbjct: 259 HDPFDAQELAIRISAQLDR 277 >gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 ++ V+IV+D++ L +E GY +Q +G EAL ++ D++I+D+ + + Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G++ ++I+E IP++ ++A + D+ G + Y+ KP + +K Sbjct: 61 NGIDTCRRIRE---TSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|312793945|ref|YP_004026868.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181085|gb|ADQ41255.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 234 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V +V+D + ++L + + GY NG LE + +PD++I+DI L +I G EI Sbjct: 6 VYVVDDEKDILELVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPDIDGYEI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+++S ++P+I ++A + D+ + G + YISKP SLS IKK + Sbjct: 66 CKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120 >gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1434 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNE N +++ G+ NG+E +E + + DVI+MD Q+ E+ G Sbjct: 1109 VLLVEDNETNRLFGKEIAHRQGWNCELAVNGVEGVEAVERGQFDVILMDCQMPEMDGFTA 1168 Query: 65 TKQIKEDSELQEI----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI++ L +I P+IA+TA A++GD E G + Y+SKP + + +E +++ + Sbjct: 1169 TRQIRQRESLGQISGRVPIIALTANAIRGDREACIAAGMDDYVSKPFTPAQLVEAVERVL 1228 Query: 121 GEA 123 A Sbjct: 1229 KRA 1231 Score = 43.6 bits (103), Expect = 0.011, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQEI 59 V++V N + +D+ E+ N +EA LA Q D++I+ Sbjct: 963 VLLVGQNSEYCRFLQDVFESWSMQVETADNTLEAESAMSKALATQKPFDLLIL----PGN 1018 Query: 60 S---GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS-KPISLSIFMET 115 + T++++E + ++PV + ++ D+E G ++ KP+ S + Sbjct: 1019 DQAEEDDFTQRLREHPLIGDVPVFLM----VEADDELAPHPGLYQHLLRKPVGQSHLLNA 1074 Query: 116 I 116 I Sbjct: 1075 I 1075 >gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + +V+D+E +L + GY + +G EA EL + PD+ ++D+ L + G E+ Sbjct: 8 IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASPPDLWVLDLMLPGMDGYEL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + E+P+I ++A + D+ + G + Y+ KP S + +K+ + Sbjct: 68 CRRIRNE---AEVPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQR 122 >gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + G Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|260172793|ref|ZP_05759205.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|315921079|ref|ZP_07917319.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694954|gb|EFS31789.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1330 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDN+ + ++ + Y NG EALE+ ++I D+ + E+ G+E+ Sbjct: 1084 LIVEDNDDFRNFLINCLKGT-YQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMELC 1142 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK D IPVI +TA E K G + YI+KP +L I + I+K + Sbjct: 1143 RKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKIL 1197 >gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D +L R +E G+ ++ +G EA + + + ++D+ + E+ G Sbjct: 1 MATILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVMMPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T+ ++E+ +++P++ +TA + R + G + Y+ KP + + ++ + Sbjct: 61 FELTRWLREE---RDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295681071|ref|YP_003609645.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295440966|gb|ADG20134.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 246 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E +G NG + PD+I++D+ L GL Sbjct: 6 HVLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRATLENGAPDLIVLDLMLPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +P++ +TA + + D + G + Y++KP + + I+ + A Sbjct: 66 LCRELRA-GKFRAVPILMLTARSEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124 >gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78] gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78] Length = 1928 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E +G L NG E +E+ QH V++MDI + E+ G Sbjct: 1808 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1867 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + ++K++ Sbjct: 1868 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 1926 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] gi|151281399|gb|ABR89809.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L +E +G NG + + Q D+I++D+ L GL Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + IPV+ +TA + D + G + Y+SKP ++ I+ + A Sbjct: 66 LCRELRA-GKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124 >gi|187923123|ref|YP_001894765.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187714317|gb|ACD15541.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 241 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + KL ++ ++ +G EAL L + + D+II+DI L E G Sbjct: 5 RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIMLPEYDGWT 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I K+I+E S +P++ +TA + + D+ G + Y++KP S+ + +K + + Sbjct: 65 ICKRIREKS---NVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRS 121 >gi|319654045|ref|ZP_08008137.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394238|gb|EFV74984.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+D + L + GY ++ + ++A+ H D+I++D+ + E+ G Sbjct: 1 MKTILLVDDETRMLDLLALYLMPLGYYCVKKSSAIDAILYVESHSVDLILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IK+ ++IP+I +TA + K D + K G + YI KP + I+ + Sbjct: 61 WTACKEIKK---FRDIPIIMLTARSEKPDIVKGLKMGADDYILKPFDEEELLARIEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 220 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 73/121 (60%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++++ED + K+ ++ + +GY ++ +G EALEL ++ D+ I+D+ + +I G Sbjct: 1 MERILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMVPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I ++I+++S+ IP+I +TA + + DE G + YI+KP SL I + +K + Sbjct: 61 WTICRKIRKESK---IPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254492365|ref|ZP_05105537.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxidans DMS010] gi|224462257|gb|EEF78534.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxydans DMS010] Length = 994 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN N+ + + L++ +G +AL L ++ D+++MD Q+ + G E Sbjct: 865 VLVVEDNTTNIVIIQGLLKKFNVTTDVAEDGEQALNLLAKNNYDLVLMDCQMPVMDGFET 924 Query: 65 TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I++ D +EIP+IA+TA AM+GDE R+ G + Y+SKPI + + + K++ Sbjct: 925 TRTIRKADSDILNREIPIIALTAQAMRGDEAACREAGMDDYLSKPIEPRLLYDKLSKWLP 984 Query: 122 EA 123 EA Sbjct: 985 EA 986 >gi|114569317|ref|YP_755997.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339779|gb|ABI65059.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 233 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D++ L + ++ G+ N +AL D++++D+ + ++G Sbjct: 9 AHILVVDDDDRIRNLLKRFLQERGFRVSTAPNAGKALSTLNSLAFDLLVLDVMMPGMNGF 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T+ +++ E P++ +TA D + G + Y+ KP + I + Sbjct: 69 ELTEAVRKRGET---PILLLTARGDAEDRIKGLSLGADDYLPKPFEPEELVLRINAILRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX] Length = 1406 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K+V+IV+D+ N+ +E G L NG E + + D+++MDI + E+ G Sbjct: 1275 KRVLIVDDDIRNVFALASALEAHGLEVLYADNGREGIAKLEANEDIDLVLMDIMMPELDG 1334 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+E + ++P+I++TA AM+GD E G Y+SKP+ L + +++++ Sbjct: 1335 DATTRMIREMPQFADLPIISLTAKAMRGDRENSLAAGASDYVSKPVDLDHLLNVMRRWLD 1394 Query: 122 E 122 Sbjct: 1395 R 1395 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ELN ++ Y +G+ A EL + + D+I++D+ L + G+ Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+ S +++P++ +T ++ G + Y+ KP + ++ + Sbjct: 62 LCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR 118 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV+ V+D+ + + + L+ G + + + E R PD++I+D+++ +G+ Sbjct: 381 AKVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGI 440 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ D + E+P++ +T ++ G + ++SKPI + I + Sbjct: 441 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 500 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 12/124 (9%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ +D+ L + L+E GY + G EA+ A PDVI++D+ + ++G E Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 65 TKQIKEDSELQEIPVIAV-----TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +KE +E + IP++ T + +ISKP+ S + ++++ Sbjct: 1441 MAMLKESTETKHIPIVICSVYKPTTNNQPSSD-------FVDWISKPVQESYLLHSLRQA 1493 Query: 120 IGEA 123 I ++ Sbjct: 1494 IAKS 1497 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ +LF L E + G EA+ L+++ PD++I+D+ L E G Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122 + +++ L IPV+ +A + E + K G +++K ++ F + + + + Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1621 >gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 270 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + L R + G+ + G EAL A +PD++I+D+ L + G E Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D E+ V+ +TA D+ G + YI+KP ++ + ++ + Sbjct: 82 VCRRLRADG--AEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRR 138 >gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K+ ++IVED + +E +G+ G A RQ PD++++DI L Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G+E+ K+++ +IP+I +TA + D + G + YI KP S + +K Sbjct: 61 KDGMEVCKELRS---FSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKA 117 Query: 119 YIGEA 123 + + Sbjct: 118 VLRRS 122 >gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] Length = 240 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ + + +E GY +G AL + +PD +++D L +SGL++ Sbjct: 13 VLLVEDDPALLLMTCYNLEQRGYRVETAEDGEAALLVLETARPDAVVLDWMLPGLSGLDV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + L+++PV+ +TA + + D R G + Y+ KP S+ ++ + Sbjct: 73 CRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLRR 130 >gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565] gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 V+D+ +L +++ G+ +G E L+ + D++++D+ + +++G + + Sbjct: 2 VDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVMMPKLNGFAMLTK 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ + PV+ +TA D + G + Y++KP + ++ + Sbjct: 62 LRK---THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRR 113 >gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D ++ + + +GY +G EALEL +++ D+II DI + + Sbjct: 1 MTKRILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLIGEV--QYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076450|gb|ADJ65849.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ L D +E + Y G E + + D+II+D+ + GLE Sbjct: 6 HVLIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSERIDIIILDLMMPGEDGLE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++ + P++ +TA D + G + Y+ KP + IK + A Sbjct: 66 LCRELRKK---RNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRA 122 >gi|291518725|emb|CBK73946.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 236 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++ V+DNE + + L+E+ GY L+ +G AL + D+II+DI + Sbjct: 1 MSKQKILTVDDNEEIRNIIKILLESEGYEVLEACDGEAALSMVDD-SIDLIILDIMMPGK 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ K I+E + +P++ +TA D+ G + Y+SKP S + +K Sbjct: 60 SGLDVCKIIREKYQ---MPILFLTAKGTDSDKSLGLLIGGDDYLSKPFSHAELTARVKSL 116 Query: 120 IGE 122 + Sbjct: 117 LRR 119 >gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 222 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L D ++ +GY+ + +G AL ++ +PD+I++D + + G E Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIK+ + IPV+ +TA + G Y+ KPI + + + ++ A Sbjct: 73 CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 >gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum ATCC 12472] gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium violaceum ATCC 12472] Length = 902 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 68/120 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDNELN ++ +L+ + NG EAL LA D+ +MD+Q+ + GLE Sbjct: 559 RVLLAEDNELNQQVATELLSAADIEVTVASNGEEALSLAEAQPFDLALMDMQMPVMDGLE 618 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T++++ + + P++A+TA AM GD ER + G +++KPI +K++ A Sbjct: 619 ATRRLRRLASWGKRPILAMTANAMSGDRERCLEAGMNDHVTKPIDPDKLFAALKRWDPRA 678 Score = 94.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 ++ ++V+D+ ++ + + + + +G +ALE Q + +V+ +D ++ Sbjct: 411 RRALVVDDSRAAREILAEQLRGMTFRVDEAEDGEQALERVEQAERDGDRYEVVFLDWRMP 470 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + G+E +++ + VT + + G E + KP+S S+ + Sbjct: 471 RMDGIEAARRLMRHDAALRPHRVMVTGYGREEVFRLAEDAGIEMTLIKPVSASVLFD 527 >gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL + K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|255654526|ref|ZP_05399935.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296449294|ref|ZP_06891079.1| response regulator [Clostridium difficile NAP08] gi|296880773|ref|ZP_06904722.1| response regulator [Clostridium difficile NAP07] gi|296261893|gb|EFH08703.1| response regulator [Clostridium difficile NAP08] gi|296428220|gb|EFH14118.1| response regulator [Clostridium difficile NAP07] Length = 224 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D E + L +D E + Y ++G +AL+ ++ PD+I++DI + EI Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNSYEVYTAQSGKDALKKISKN-PDIILLDINIPEID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P++ +TA D+ + G + YI KP L + ++ Sbjct: 60 GIEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002] gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002] Length = 232 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 4/127 (3%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K+ +++V+D + + +E N +A ++ + PD++I DI + Sbjct: 1 MDKRYNILLVDDEPGVREAVQAYLEDDEALTVTTAENATKAWDVLQTFTPDLVISDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G + Q++ED + +PVI +TA M GD + + GC+AY+ KP +K Sbjct: 61 QVDGYQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCDAYLPKPFEPEELEAIVK 120 Query: 118 KYI-GEA 123 + EA Sbjct: 121 NLLTREA 127 >gi|160899265|ref|YP_001564847.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160364849|gb|ABX36462.1| GAF sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1177 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 69/125 (55%), Gaps = 5/125 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 + V++VED+ N+ ++E +G RNG EALE Q D+++MDI + Sbjct: 1053 RTVLVVEDDVRNVFALSSILEPTGIRVEIARNGREALETLEARGTAQAGIDLVLMDIMMP 1112 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G ++I+ + + +P+IA+TA AMK D+E+ G YI+KP+ + + ++ Sbjct: 1113 EMDGYTAMREIRNRPQWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLVR 1172 Query: 118 KYIGE 122 ++ + Sbjct: 1173 VWMPK 1177 Score = 104 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 10/127 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++++ED+ + +L + + L +A ++P+ I++DI L + SGL Sbjct: 785 RRILVIEDDRRFADILSELAREMDFECDVASTASDGLAMAASNQPNAIVLDINLPDFSGL 844 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--- 119 + Q+K + + IPV V+ + + G Y KP+ + +K+ Sbjct: 845 GVLDQLKRNPVTRHIPVHVVS---VADYSQEAMGRGAVGYALKPVKREELVHALKRLEAK 901 Query: 120 ----IGE 122 + Sbjct: 902 FTQDLRR 908 Score = 88.3 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 50/94 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+E + R L+ S + ALE R D ++MD+ L +ISG Sbjct: 907 RRVLVVEDDERQRESVRHLLSRSDVDIVCAGTAAAALEHLRGATFDCMVMDLNLPDISGY 966 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 E+ +++ + ++ PVI T A+ DEE+ + Sbjct: 967 ELLQRMTDQDDVSFPPVIVYTGRALSRDEEQQLR 1000 >gi|91782444|ref|YP_557650.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|296159047|ref|ZP_06841874.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|91686398|gb|ABE29598.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|295890608|gb|EFG70399.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 241 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ L RD + G + + +PD+I++D+ + + Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRKLRASGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|27366393|ref|NP_761921.1| Two component response regulator [Vibrio vulnificus CMCP6] gi|27362594|gb|AAO11448.1| Two component response regulator [Vibrio vulnificus CMCP6] Length = 304 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 67/117 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+KL L++ GY+ + AL + ++ KPD+I++DI + E+ G E+ Sbjct: 10 ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKKPDLILLDIMMPEVDGYEL 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +Q+K+D Q+IPVI ++A D+ R + G YI KP + + ++ + G Sbjct: 70 CRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAG 126 >gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED+ +L +D +E S + +G+ L +++K D+II+D+ L ++ G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +I + I + +++PV+ V+A + D+ + G + YI+KP S + +K +I Sbjct: 61 FDILRII---HDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHI 116 >gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains [Bradyrhizobium sp. BTAi1] Length = 1695 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V++V+D+ N+ ++E G L G EA++L + +++MDI + ++ G Sbjct: 1575 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGAEAIDLVQSTPAISIVLMDIMMPQMDG 1634 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I+++ +P+IA+TA AMKGD E+ + G Y++KP++ + I+ ++ Sbjct: 1635 YQTIGVIRQNPAFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 1694 Query: 122 E 122 Sbjct: 1695 R 1695 Score = 98.7 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+ ++ DL G+ L G EAL+LA+Q++P I +D+ L ++ G Sbjct: 1308 TLLIVEDDPHYARVLIDLARDKGFKILVATRGAEALDLAKQYQPAAISLDVFLPDMLGWT 1367 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + Q+K + + IPV +T + D + G ++++KP + + + Sbjct: 1368 VLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVNKPTTTEGVSAALSQI 1420 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVEDN R L++ L G ALE R D +++D++L ++SG Sbjct: 1429 KRLLIVEDNAAEQLSIRQLLDHDDIEILAADTGAGALEALRGTPCDCVVLDLRLPDMSGF 1488 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ Q++ D L IPV+ T + +E+ + + K + S ++ Sbjct: 1489 DVLDQLRSDETLSGIPVVVFTGRELSAEEDAELHTMARSIVVKGVESPERLLD 1541 >gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G++ NG +A L + ++++D+ L GL Sbjct: 7 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++E +IPV+ +TA + D + G + Y+ KP + + I+ + Sbjct: 67 ICRRLREAGN--QIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRR 123 >gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1205 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 KK+++V+D+ N+ ++ G L+ +G ALEL + D+++MDI + E+ G Sbjct: 1085 KKILLVDDDMRNVFALSKILSEKGMNVLKAEDGNSALELLSKNEDVDLVLMDIMMPEMDG 1144 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E K+I+E S+ + + +IA+TA AM+ D ++ + G YI KP+ + ++ ++ Sbjct: 1145 YETMKKIREISKYKNLTIIALTAKAMQNDRQKCIEAGANDYIPKPVDVERLFSLMRVWLS 1204 Query: 122 E 122 + Sbjct: 1205 K 1205 Score = 90.6 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%) Query: 4 KVMIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV++V ED+ + G+ + G + L L R++KP II+D+ L I G Sbjct: 817 KVLLVIEDDLKFASVLIKQANEKGFKCISAATGEDGLILTRKYKPHAIILDLDLPGIKGQ 876 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 + ++K D ++ IPV V+A + +GG +I KPI I+ + Sbjct: 877 TVLNELKADQSIRHIPVHIVSAN---EYSLELIRGGAVEHIRKPIHKKELDEAFNRIENF 933 Query: 120 IGE 122 I Sbjct: 934 INR 936 Score = 82.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ + K+ LI + +G EAL + ++ D I++DI L ++SG Sbjct: 938 MKNLLIIEDDFNSRKMMLKLIGNGDVKCFEADSGKEALRVYAENHFDCIVLDIGLPDMSG 997 Query: 62 LEITKQIKEDSELQEIPVIAVTAF--AMKGDEE 92 E+ +++++ + P++ T + D+E Sbjct: 998 FELIQEMEKIKNGRIPPIVIYTGKELTKEEDKE 1030 >gi|262409757|ref|ZP_06086294.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262352374|gb|EEZ01477.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1321 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ L++ Y+ NG +AL +AR++ PD+I+ D+ + E+ G Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116 E+ +K D E IPV+ +TA + D + G +AYI+KP S+++ I Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187 Query: 117 KKYIGEA 123 + + A Sbjct: 1188 RALLRRA 1194 >gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 228 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL K D++I+DI + + G + Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 67 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ L + G+ G++A++ A++ +PDV+++DI L + GLE Sbjct: 22 RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLE 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 82 VMRRIR--GRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRS 139 >gi|223938484|ref|ZP_03630377.1| response regulator receiver protein [bacterium Ellin514] gi|223892903|gb|EEF59371.1| response regulator receiver protein [bacterium Ellin514] Length = 134 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M++ +++IV+D ++L + GY + NG++A+ A PD+I++D+ L E+ Sbjct: 1 MMRPRILIVDDEPDIVELVSFNLRAEGYEVVTASNGLDAVTQANSLIPDLIVLDLMLPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + + + IP+I +TA+ + G E Y++KP S + +KK Sbjct: 61 DGLSVCELLHRFPTTARIPIIMLTAWTSELSRLIGLDYGAEDYMTKPFSPRELVLRVKKT 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 232 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 +++V+D + + +E SG N +A ++ + PDVII DI + E+ Sbjct: 4 SATILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEKTIPDVIISDIMMPEVD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++++ DS + IPVI +TA M D + GC+AY+ KP +K + Sbjct: 64 GYEFLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLL 123 Query: 121 GE 122 Sbjct: 124 ER 125 >gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 232 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D+ +K+ +E GY + ++G EA+ +A KPD++I+DI + ++ Sbjct: 1 MNGTILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE ++IK ++P++ ++A D+ K G + Y +KP S + +K + Sbjct: 61 GLEACQKIK---GAADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|265751907|ref|ZP_06087700.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] gi|263236699|gb|EEZ22169.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_33FAA] Length = 379 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + L+ + + NG EAL A +PD+I++D+ + E++G E Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K D E Q IP+I +TA D + K G +ISKP + + + Sbjct: 75 VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127 >gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRSRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] Length = 230 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + + G+ +G E + Q D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED ++L ++ +G+ +N +A + +Q P +I++D L + SGL Sbjct: 7 TILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLR 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+ D + E+P+I +TA +M+ D+ G + Y++KP S I + Sbjct: 67 LLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125 >gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555] gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555] Length = 232 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L ++ G+ ++ NG +A + ++ I+D+ L +I Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E+ PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GFTLCQRIRENHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|294777012|ref|ZP_06742470.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294449070|gb|EFG17612.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 379 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + L+ + + NG EAL A +PD+I++D+ + E++G E Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K D E Q IP+I +TA D + K G +ISKP + + + Sbjct: 75 VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127 >gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24] gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1829 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827 Query: 122 E 122 E Sbjct: 1828 E 1828 >gi|254881616|ref|ZP_05254326.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|319643000|ref|ZP_07997634.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254834409|gb|EET14718.1| two-component system sensor histidine kinase [Bacteroides sp. 4_3_47FAA] gi|317385365|gb|EFV66310.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 379 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + L+ + + NG EAL A +PD+I++D+ + E++G E Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K D E Q IP+I +TA D + K G +ISKP + + + Sbjct: 75 VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127 >gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 242 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED G+ +G+ +E A+++ PDVI++D+ L I GLE Sbjct: 11 RVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLPGIDGLE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + + +P++ +TA + D G + Y++KP S+ + +K + Sbjct: 71 VCRRIQAEDP-RAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRR 128 >gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 241 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L D + +G+ + NG E + + ++I++D+ L GL Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++P+I +TA D + G + Y+ KP + IK + Sbjct: 66 LCREVRAQG---DLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRR 121 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ G +A+ A++ +PD +++DI L + GLE Sbjct: 12 RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGLE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +PV+ +TA D G + Y++KP SL + ++ + A Sbjct: 72 VLRRIRSTD--PSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 129 >gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 231 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 ++ V+IV+D++ L +E GY +Q +G EAL+ + D++I+D+ + ++ Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G++ ++I+E IP++ ++A + D+ G + Y+ KP + +K Sbjct: 61 NGIDTCRRIRE---TSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] Length = 221 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED ++ ++ + Y +G EAL+ + D+II DI + + G E Sbjct: 2 KILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++E PVI +TA D+ G + YI KP + I+ + Sbjct: 62 FIARLRESKN--NTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118 >gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] Length = 1325 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDNE+N ++ L+E +G NG EALE D+++MD+Q+ + G+ Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ + + +P++A+TA AM D ER + G ++SKPI + F + +K+++ Sbjct: 1052 TATKHIRTNGRWKNLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL + D++ D + ++G+ Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ ++K VTA+ + + +A I KP++ S ++ I Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965 >gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1027 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +++ + ++E SGY +NG EAL+ + D+I+MD+Q+ + G+E Sbjct: 901 RILVAEDDTISLITAKRMLEKSGYSVSAAKNGQEALQRLTEESFDLILMDVQMPIMDGVE 960 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ S L +P++A+TA+AM GD+E G + YISKP+ + E I++ + Sbjct: 961 ATKAIRGASNLGAKSSVPIVAMTAYAMTGDKETFLAAGMDDYISKPVDKAALAEVIERVL 1020 >gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] Length = 239 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 10 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 69 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 70 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 126 Query: 121 GEA 123 + Sbjct: 127 RRS 129 >gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4] gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 224 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + G+ +G EL + D++I+DI + ++G Sbjct: 1 MAKIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ PV+ +TA D + G + Y+ KP S IK + Sbjct: 61 LELCRMYRQRFGYHS-PVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALLR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|171323011|ref|ZP_02911673.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171091604|gb|EDT37194.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 241 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + ++ + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 230 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + + G+ +G E + Q D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|87310339|ref|ZP_01092469.1| phosphate regulon response regulator PhoB [Blastopirellula marina DSM 3645] gi|87286838|gb|EAQ78742.1| phosphate regulon response regulator PhoB [Blastopirellula marina DSM 3645] Length = 247 Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + KV+IVED+ + + +GY + +G + L A+ PD++I+D+ L + Sbjct: 1 MARLKVLIVEDDRSLADVLAYNVRQAGYEVISAYDGQDGLTQAQIKTPDLVILDLMLPVV 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++++ D+ ++I ++ +TA + + D+ G + Y++KP S+ + +E IK Sbjct: 61 DGHEVCRRLRADASTKDIMILMLTAKSEESDQLIGFSLGADDYVTKPFSVKVLLERIKAL 120 Query: 120 IGE 122 + Sbjct: 121 VRR 123 >gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] Length = 230 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 232 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D + + + ++ GY ++ +G EA+++ + KP + I+DI L +SG Sbjct: 4 KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIMLPGMSGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+++S + +I V+A + D+ + G + YI KP + + ++ + Sbjct: 64 EVCEKIRDESPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRR 121 >gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 226 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED++ K L++ Y +Q +G A+E + D++I+D+ L + G Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+IK ++PVI +TA + D+ G + Y++KP S + M IK + Sbjct: 61 FSVLKEIKNRE---DVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100] Length = 1609 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 ++IV+D +N ++ ++ + + Y Q +G EAL++ D++++D+ + +SG Sbjct: 1199 HILIVDDEVVNQQVLKNFLNKAIYRITQVLSGEEALQVLDDDDTIDLVLLDVMMPRMSGY 1258 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I+E E+PV+ +TA D G YI+KP S F+ + ++ Sbjct: 1259 EVCQKIREKHLPSELPVLMITAKNQVSDLVTGLNTGANDYIAKPFSKDEFLARLNMHL 1316 >gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13] Length = 223 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED + ++ + +E GY G LE +++ D++++D+ L E+SG Sbjct: 1 MANILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ PVI +TA D+ G Y++KP + + ++ + Sbjct: 61 LEVLRRIRATDT--STPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLR 118 >gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED E L +D +E SG+ G LE A + + D+II+D+ L E+ G Sbjct: 1 MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I +Q++++ + IP+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHME 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 226 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K K++IV+++ + + L+ G+ ++ +G EAL++ H +I +D+ L + Sbjct: 1 MKNIKILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNYSLISLDVMLPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+I+E S IP+I +TA + + + G + YI+KP S + IK Sbjct: 61 DGWTVCKKIRERS---NIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAV 117 Query: 120 IGEA 123 + A Sbjct: 118 LKRA 121 >gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] Length = 253 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ ++ +E GY + G A+ LAR +PD+II+D+ L I G Sbjct: 19 QRILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGR 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + I++ P++ +TA + D + + G + Y+ KP I + Sbjct: 79 DVCRLIRK---WSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRR 135 Query: 123 A 123 + Sbjct: 136 S 136 >gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ + + ++ G E +E AR+HKP+V+++DI L + G Sbjct: 1 MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++ E + +I +TA + D+ + G + YI KP + IK + Sbjct: 61 LEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 244 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ L ++ + +G+ + +G AL A PD++++D+ L + G Sbjct: 1 MARVLVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ +++ + + +PVI +TA A + D + G + Y++KP S ++ + Sbjct: 61 LEVFRRL---TARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVL 116 >gi|16126702|ref|NP_421266.1| polar differentiation response regulator [Caulobacter crescentus CB15] gi|13424012|gb|AAK24434.1| polar differentiation response regulator [Caulobacter crescentus CB15] Length = 130 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 86/122 (70%), Positives = 103/122 (84%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+E GY LQTR G+ AL +AR++KPD+I+MDIQL EIS Sbjct: 6 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEIS 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED +L IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK+ + Sbjct: 66 GLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 125 Query: 121 GE 122 Sbjct: 126 ER 127 >gi|283852522|ref|ZP_06369790.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572130|gb|EFC20122.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 671 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +N ++ G+ +G EAL L Q D+++MDIQ+ ++GLE Sbjct: 550 RILLAEDEPVNRIFTVRALQKLGHSVETAADGREALLLLGQSPFDLVLMDIQMPRLNGLE 609 Query: 64 ITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ IPV+A+TA+AM D ER G + Y++KP +E +++ + Sbjct: 610 ATRMIRSGQVPGIATTIPVVALTAYAMDSDRERGLDAGMDEYVTKPFEPWELVEAMERAL 669 Query: 121 GE 122 + Sbjct: 670 AK 671 >gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 227 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L+ G+ + NG++AL + + D++++D+ L +SG Sbjct: 1 MSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E + +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 MEVCRKLRE---VSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|92117964|ref|YP_577693.1| response regulator receiver domain-containing protein [Nitrobacter hamburgensis X14] gi|91800858|gb|ABE63233.1| response regulator receiver domain protein (CheY-like) [Nitrobacter hamburgensis X14] Length = 121 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 78/121 (64%), Positives = 103/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EAL+L R+ +PD+++MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSNGFEALDLVRKLRPDLVLMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET+++++ Sbjct: 61 GLDVTRWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1] gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1] Length = 254 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + + P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|85716224|ref|ZP_01047198.1| response regulator receiver [Nitrobacter sp. Nb-311A] gi|85696896|gb|EAQ34780.1| response regulator receiver [Nitrobacter sp. Nb-311A] Length = 121 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 78/121 (64%), Positives = 103/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EAL+L R+ +PD+++MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYHTSGTSNGFEALDLVRKLRPDLVLMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET+++++ Sbjct: 61 GLDVTRWIKDDPELRGIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1167 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG EA+ + D+++MD+ + E+ G Sbjct: 1043 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGFEAIARLNEVEDIDLVLMDVMMPEMDG 1102 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1103 YEATVEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1162 Query: 122 E 122 + Sbjct: 1163 K 1163 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 777 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADDGFNLAARYTPDAILLDMRLPDHSGLTV 836 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D + G Y KP + + K Sbjct: 837 LQRLKELAPTRHIPVHVIS----VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 888 Score = 79.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 44/90 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 897 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 956 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 E+ K++ + PVI T M DEE Sbjct: 957 ELLKRMSTEDICSFPPVIVYTGRNMTRDEE 986 >gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 247 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L +E+ G+ G EA + PD++I+D L +SGLE Sbjct: 19 RILVVEDEAALALLLAYNLESEGFQVEHVERGDEAEIRLSESLPDLVILDWMLPGVSGLE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + + +PVI +TA + + R G + Y+ KP S M + + A Sbjct: 79 ICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRRA 138 >gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T] gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T] Length = 228 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + R + + Y+ +G E LA + D++++D+ L + G Sbjct: 2 KILVVEDELKLAEYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVMLPGLDGFA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + +PV+ +TA D + + G + Y+ KP +LS + ++ + Sbjct: 62 VLRELRRD---KHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRR 117 >gi|163792857|ref|ZP_02186833.1| response regulator receiver protein [alpha proteobacterium BAL199] gi|159181503|gb|EDP66015.1| response regulator receiver protein [alpha proteobacterium BAL199] Length = 136 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 83/119 (69%), Positives = 103/119 (86%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IVEDNELNMKLF DL+E GY + TR+GMEAL +AR +PD+I+MDIQL ++SGL Sbjct: 18 KTVLIVEDNELNMKLFHDLLEAHGYNIIGTRDGMEALRIARDSRPDLILMDIQLPKVSGL 77 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+TK IKED L+ IPVIAVTAFAMKGDEE+IR+GGCEAYI+KPIS++ F+ET+KKY+G Sbjct: 78 EVTKWIKEDDRLKSIPVIAVTAFAMKGDEEKIREGGCEAYIAKPISVTNFLETVKKYLG 136 >gi|160885098|ref|ZP_02066101.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483] gi|156109448|gb|EDO11193.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483] Length = 1325 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1132 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1133 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1189 >gi|119469501|ref|ZP_01612405.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonadales bacterium TW-7] gi|119447036|gb|EAW28306.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonadales bacterium TW-7] Length = 330 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D N+K+ R+++ Y ++G AL L + P +I++DI + +++G E Sbjct: 9 RVLIVDDEPANLKVMREILGNQ-YRLSFAKSGEAALTLLEKELPKLILLDIMMPDMNGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K + + IP+I VTA + DE + + G YI+KPIS +I +K ++ Sbjct: 68 VCEHVKRNPKTAHIPIIFVTALGDESDEYKGFELGAVDYITKPISPAIVRARVKTHL 124 >gi|68565392|sp|Q44929|GTCR_ANEMI RecName: Full=Response regulator gtcR gi|468745|emb|CAA55264.1| gtcR [Brevibacillus brevis] Length = 242 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I +D ++L + +E Y ++ +G +A RQH D+ I+DI + + Sbjct: 1 MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K++ + +L PVI ++A D+ G + +ISKP + + I+ + Sbjct: 61 GFQLIKRLTNEYKL---PVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|68171699|ref|ZP_00545057.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa] gi|88657972|ref|YP_507571.1| response regulator PleD [Ehrlichia chaffeensis str. Arkansas] gi|67998880|gb|EAM85574.1| GGDEF [Ehrlichia chaffeensis str. Sapulpa] gi|88599429|gb|ABD44898.1| putative response regulator/diguanylate cyclase [Ehrlichia chaffeensis str. Arkansas] Length = 458 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IV+D N+KL + + + Y L NGM+A+++A + PD+I++D+ + E+ Sbjct: 1 MTAKVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHPDIILLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K++K + E IP++ VTA D G + +++KPI+ + I+ Sbjct: 61 GYETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPINDTALFARIRSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 75.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 8/122 (6%) Query: 5 VMIVEDNELNM-KLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV D ++ + ++++ S + + N +AL L+ D+II+D++ GL Sbjct: 159 ILIV-DEDMIRSEHINNVLQKSFQQTVVSHNIDQALTLSNTQNYDLIIIDLEFSG-DGLR 216 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q++ E + P++ + D + G YI+ PI + + + + Sbjct: 217 LCSQLRNKIETRYTPILVL--LDENEDPKLLSKAFDIGIHDYITNPIDSNELIARVNVQV 274 Query: 121 GE 122 Sbjct: 275 KR 276 >gi|186682101|ref|YP_001865297.1| response regulator receiver modulated serine phosphatase [Nostoc punctiforme PCC 73102] gi|186464553|gb|ACC80354.1| response regulator receiver modulated serine phosphatase [Nostoc punctiforme PCC 73102] Length = 396 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 4/124 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ + + + ++ GY +NG E + A+ +P +II D + ++ G Sbjct: 1 MFKILVIDDDPIVRTVLKKTLQNQGYDTSVAKNGEEGIRQAQLLRPALIICDWMMSQLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVT----AFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 LE+ ++I+ D EL I +T A + D R G + +ISKPI ++ ++ Sbjct: 61 LEVCRRIRTDPELATTFFILLTAKGAARGEEEDRVRGLDAGADEFISKPIEMNELKARVR 120 Query: 118 KYIG 121 + Sbjct: 121 AGLR 124 >gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 200 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED + ++ +GY +G EAL+ + D++I+DI + ++ G E Sbjct: 2 KILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ + V+ +TA D+ + G + YI KP + + I+ + Sbjct: 62 VIKKLR--DKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRR 118 >gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 229 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ + G++ +G AL R+++PD++++D+ L +S Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + I+ +S +P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GIDVARAIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|253578578|ref|ZP_04855850.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|257413775|ref|ZP_04744208.2| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] gi|251850896|gb|EES78854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|257202423|gb|EEV00708.1| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] Length = 235 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + + GY+ NG EAL +H PD+I++DI + +++ Sbjct: 12 MAQSILIVDDERDIVSMLNQYFCKIGYVVYTAINGKEALNAITKH-PDIILLDINMPDMN 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+ P+I +TA D+ + G + Y+ KP S+ + ++ Sbjct: 71 GFTICEKIR---NFVSCPIIFLTARIEDCDKIKGFAVGGDDYVVKPFSVDELEARVAAHL 127 Query: 121 GE 122 Sbjct: 128 RR 129 >gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 226 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E ++E G+ +G AL + D++++D+ L +SG Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ S +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRTLRTRS---TVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)] gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)] Length = 1829 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827 Query: 122 E 122 E Sbjct: 1828 E 1828 >gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 234 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+ + D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300725849|ref|ZP_07059315.1| putative two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299776896|gb|EFI73440.1| putative two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1355 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN ++L + ++ Y + +NG +A + ++ D++I DI + + GLE Sbjct: 1104 TILIVEDNLELLQLMQKILGNL-YHIITAKNGSQAWNIIQKESLDLVISDIMMPIMDGLE 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T+ IK + + Q IPV+ +TA D+ + + G + +++KP S+ I + Sbjct: 1163 LTRLIKTNHDYQLIPVVLLTAKTTTEDKNKGLEAGADDFMNKPFSMEELKMRIANLL 1219 >gi|298483673|ref|ZP_07001848.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298270243|gb|EFI11829.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1344 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208 >gi|294647220|ref|ZP_06724819.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|292637507|gb|EFF55926.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 1344 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208 >gi|229142249|ref|ZP_04270771.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228641187|gb|EEK97496.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 230 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 5/120 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59 +KKV+IVED ++ + GY + +G L+L ++H ++I+DI L + Sbjct: 5 MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + ++I+++S +P+I +TA + + D + G + Y++KP SI + K+ Sbjct: 65 DGWSVCRRIRKNS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121 >gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 235 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++M+VED + +E GY G ALE R + D+II+D+ L + G + Sbjct: 7 RIMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERCDLIILDVMLPGMDGFQ 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++E +P++ +TA + D + G + Y++KP +L+ F+ +K + + Sbjct: 67 VCKAMRELD--SRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRRS 124 >gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1424 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG + ++ H +++MD+ + E+ G Sbjct: 1304 RTVLVVDDDARNLFALSGILELHGFKVLHAENGRKGVDTLLAHPEICLVLMDVMMPEMDG 1363 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ S+ ++PV+AVTA AM GD E+ + G Y++KP+ + + +++++ Sbjct: 1364 YAATTEIRSMSQYTDLPVVAVTAKAMPGDREKALQSGASDYVTKPVDANDLIACVRRWL 1422 >gi|158338166|ref|YP_001519343.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158308407|gb|ABW30024.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 355 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D N+ L + ++E++GY +G AL ++ +PD++I+D+ + +SG E+ Sbjct: 11 ILAVDDLPDNLMLLKMMLESAGYRIELVDSGPAALAQIQKAQPDLVILDVMMPGMSGYEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ D +L IP++ ++A + + G + +I KP+ L ++ + Sbjct: 71 TQKIRNDPQLPYIPILLISAH-ERSSVVKGLDAGADDFIRKPVELEELQARVRSLLR 126 >gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 248 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ NGM AL ARQ +PD +++D+ L ++ G Sbjct: 23 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGFA 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + +PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 83 VLRRLREVAPT--VPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 140 >gi|167034739|ref|YP_001669970.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida GB-1] gi|166861227|gb|ABY99634.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida GB-1] Length = 643 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + ++ + G +G+EA++L Q + ++MD +L + G E Sbjct: 517 VLLVEDNPVNQSVIEAMLRSLGLAVCTAEDGLEAVDLVGQQRFAAVLMDCRLPHLDGYEA 576 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ +P+IA+TA A++GD ER G + Y+SKP+ + +++++ Sbjct: 577 TRRIRQLPNGAGLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTELQRVLQRWL 632 >gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 248 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I++D++ ++L + GY + +G +AL++ ++ D++I+DI + + + Sbjct: 18 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIMMPKRN 77 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E++ +P++ ++A A D+ G + Y+ KP + + +K + Sbjct: 78 GLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALL 134 Query: 121 GEA 123 + Sbjct: 135 RRS 137 >gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 239 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D + ++L + G+ +G +AL+ AR +P +I+D+ + I G Sbjct: 12 ARVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGIDGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ D + PV+ +TA D+ G + YI+KP SL + ++ + Sbjct: 72 GLLPRLRADGI--DAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRR 129 Query: 123 A 123 A Sbjct: 130 A 130 >gi|330953354|gb|EGH53614.1| response regulator receiver [Pseudomonas syringae Cit 7] Length = 1172 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 1048 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 1107 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1108 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1167 Query: 122 E 122 + Sbjct: 1168 K 1168 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 782 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 841 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ ++ +E G Y KP + + K Sbjct: 842 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 893 Score = 77.9 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 902 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 961 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 962 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 992 >gi|330900706|gb|EGH32125.1| response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 934 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 810 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 869 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 870 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 929 Query: 122 E 122 + Sbjct: 930 K 930 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 544 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 603 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ ++ +E G Y KP + + K Sbjct: 604 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 655 Score = 77.9 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 664 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 723 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 724 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 754 >gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ +D++ ++ GY L+ +G+EA+EL Q++ +I+DI + ++ G+ Sbjct: 5 TVLVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEVHCMILDIMMPKMDGIT 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+ + + IP+I ++A A + D+ G + YI+KP M +K + Sbjct: 65 ATFKIRAE---RNIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRR 120 >gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED + ++ GY + NG E LE+A + D+I++D+ L E+ Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++++ + ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQQE---KNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 235 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + +E Y+ +T +G AL L +PD+II+D+ L ++SG + Sbjct: 5 KILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPDLSGED 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I++ S +IP++ +TA + + D G + Y+ KP S M + + + Sbjct: 65 VCKTIRKKS---DIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRS 121 >gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L + + G+ + G EAL++A + +PD I+D+ + + G E Sbjct: 7 KVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMPGMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + PV+ +TA D+ G + Y+ KP SL + ++ + Sbjct: 67 LLTKLRETGH--DGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRR 123 >gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 227 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + GY + G++A LA+ H D++I+D L SGLE Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I Q++ P++ +TA D + G + Y+ KP L + ++ + Sbjct: 62 ICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|153872459|ref|ZP_02001345.1| histidine kinase [Beggiatoa sp. PS] gi|152071075|gb|EDN68655.1| histidine kinase [Beggiatoa sp. PS] Length = 823 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N ++E + NG EALEL +H+ +++MDI + E+ G Sbjct: 703 KKVLIVDDDPRNTFALATVLEDKQMEVIAGNNGNEALELLDEHQNITIVLMDIMMPEMDG 762 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +QI+ +++P+IA+TA AMKGD+ + + G Y+SKP+ + ++ ++ Sbjct: 763 YEAMRQIRAQDRFRKLPIIALTAKAMKGDKSKCIEAGANDYLSKPVDTDKLISLMRVWL 821 Score = 106 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 5/119 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED+ + + +L G+ L NG L+L +++P+ II+D+ L ++ G + Sbjct: 436 ILIIEDDRKFISILMELAHEKGFKCLVAENGQTGLQLVEEYQPNAIILDVGLPQLDGWTV 495 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKYI 120 +K+D + + IPV ++A + + G Y+ KP++L + I++++ Sbjct: 496 MGILKDDPKTRHIPVHFISA--ADHNILEATRMGAIGYLQKPVNLEQLGETFQKIEQFM 552 Score = 50.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV DNE + + DL+ AL+ +Q D II+D+ +++ SG Sbjct: 557 KKLLIVVDNEPHQQQILDLVSAKDIETTLAVTMTTALQNLKQALFDCIILDLDIEQRSGS 616 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PI----SLSIFME 114 ++ KQ++E L + P+I A E C K PI S ++ Sbjct: 617 QLLKQMQEIDGLCQTPMIVY-ADRELSTAEEALLLQCAD---KLPIKSVHSPERLLD 669 >gi|152985847|ref|YP_001347317.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7] gi|150961005|gb|ABR83030.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7] Length = 242 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 56/121 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D++ +L + +G+ G + + + + + I+D+ L + G Sbjct: 6 RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEAILAILDVMLPDEDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ L +P+I +TA + + D + G + Y+ KP S + IK + Sbjct: 66 SLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|93006920|ref|YP_581357.1| CheA signal transduction histidine kinases [Psychrobacter cryohalolentis K5] gi|92394598|gb|ABE75873.1| CheA signal transduction histidine kinases [Psychrobacter cryohalolentis K5] Length = 2301 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 68/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ K+ +E G+ + ++G++ALE+ ++ PD++++DI++ + G E Sbjct: 2175 TILVVDDSVTVRKVTSRFLERQGFNVVLAKDGIDALEILQEMTPDLMLLDIEMPRMDGFE 2234 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + LQ +P+I +T+ + ER + G Y+ KP + ++ I+ + E Sbjct: 2235 VATQVRHNGRLQHLPIIMITSRTGEKHRERALEIGVNDYMGKPFQENQLLDKIQSLLDE 2293 >gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + + GY + ++G EALEL ++ P +I++D L G+ Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S ++P+I +TA D G + YI+KP + I+ + Sbjct: 67 VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122 >gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1401 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+ +D ++ + ++ NG E + A PD+I+ DI + E++G+E+ Sbjct: 1141 VLLVEDNDDFRFYLKDNLKEVFF-LIEASNGREGWQKALAMHPDIIVSDISMPEMTGIEL 1199 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K D IPV+ +TA + D+ + + G Y++KP + I + IK + Sbjct: 1200 CKKLKSDKRTSHIPVVLLTALTGEADQIKGLEIGANDYMTKPFNFEILLSKIKNIL 1255 >gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 245 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++I +D+ L + ++ Y + NG+EAL+ + DV+I+D+ + + G Sbjct: 19 RRILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVMMPYVDGF 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+ S ++P++ +T+ D + G + YI+KP + ++ + Sbjct: 79 EACERIRAQS---DVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRR 135 >gi|262406809|ref|ZP_06083358.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262355512|gb|EEZ04603.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1325 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1132 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1133 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1189 >gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 226 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|237714923|ref|ZP_04545404.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445248|gb|EEO51039.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1344 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208 >gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 224 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|209518114|ref|ZP_03266943.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501418|gb|EEA01445.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 246 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E +G NG + PD+I++D+ L GL Sbjct: 6 HVLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRAALENGAPDLIVLDLMLPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +P++ +TA + D + G + Y++KP + + I+ + A Sbjct: 66 LCRELRA-GKFRTVPILMLTARNEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124 >gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E ++ + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 231 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++V+D+ L L+ G A +G ALE + ++I+DI + + Sbjct: 1 MSEHVLVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIMMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ +PV+ ++A + + D R + YI+KP + +K + Sbjct: 61 GWEVCRRIR---RTSAVPVLFLSAKSEEMDVVRGFSLDADDYITKPFKPFELIARVKARL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 239 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ K + + + Y L +G EAL+L K D+I+MDI + + +G++ Sbjct: 5 TILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIMMPKKNGID 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I+++S IP++ ++A + D+ G + YI+KP + + + + Sbjct: 65 TTMLIRQESI---IPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRR 120 >gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 904 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 77/129 (59%), Gaps = 10/129 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP------DVIIMDIQLQE 58 V++VED+++N + ++ G+ NG EAL+ P D+I+MDIQ+ Sbjct: 769 VLVVEDDDMNRMAAQRMLVKLGFTVHTACNGQEALDFLAGQTPQAQPSVDLILMDIQMPV 828 Query: 59 ISGLEITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + GLE T++I+E+++ + P+IA+TA+AM GD ER + G + +++KP+ ++ ++ Sbjct: 829 MDGLEATRRIRENADGRFDPLTPIIALTAYAMAGDRERFLQAGLDDHLAKPVKVAEMLDA 888 Query: 116 IKKYI-GEA 123 +K+ + A Sbjct: 889 MKRALDRRA 897 >gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1] gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1] Length = 218 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN ++++E +GY+ +G EAL+ + D+II+DI L +I G + Sbjct: 2 KILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEYDLIILDIMLPKIDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + + P++ +TA D+ + G + Y+ KP + + ++ I A Sbjct: 62 VCQLAR--DKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRA 119 >gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena CCY9414] gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena CCY9414] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +++ GY +G E A D++I+D L +GLE Sbjct: 2 RILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSEFAAGGTYDLLILDWMLPGKTGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + PV+ +TA D G + Y+ KP L + ++ + A Sbjct: 62 ICQELRRQG--KATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRA 119 >gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 217 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED E K+ + +E G+ + +G EA+E + V+I+D+ L + G Sbjct: 2 KILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + PVI +TA D+ + G + Y+ KP+S + +K + Sbjct: 62 VLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117 >gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1823 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ L+E GY A NG+EALE R+ DV++MD+Q+ ++ GLE Sbjct: 1534 RILLAEDNLVNQKVATHLLERIGYRADIAGNGLEALEALRKQFYDVVLMDVQMPQMDGLE 1593 Query: 64 ITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK---Y 119 T++I +E E +IA+TA AM+GD E+ G YI+KP+ + K Sbjct: 1594 ATRRICQEWPEQLRPRIIAMTANAMQGDREKCLAAGMNDYITKPVRREELANALSKCKPI 1653 Query: 120 IGE 122 + E Sbjct: 1654 LRE 1656 Score = 74.0 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 61/139 (43%), Gaps = 19/139 (13%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+++IVE+++ N ++ L + G I + G EA++L + + D+ I+ + L ++ G Sbjct: 1333 KRLLIVENHDTNRQVLIKLSQYWGMIPIAAATGAEAMQLLQHNPMVDLAILAMNLADMDG 1392 Query: 62 LEITKQIK----------------EDSELQEIPVIAVT--AFAMKGDEERIRKGGCEAYI 103 + + +I+ + +P++ T A + + ++ Sbjct: 1393 IALANKIRNFELGYSHLVNGSEPARTEPERRLPMVMFTYLGKAEVWKKLENAEINFAGFL 1452 Query: 104 SKPISLSIFMETIKKYIGE 122 +KP+ S F + + G+ Sbjct: 1453 TKPLKQSQFYNVLLQIFGD 1471 >gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 237 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E A+Q PDV+I D+ + + G Sbjct: 12 RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFGKAQQLLPDVVITDVMMPRLDGYG 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +++ D L PVI +TA M D + G + YI KP + ++ Sbjct: 72 LLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 127 >gi|163848627|ref|YP_001636671.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222526562|ref|YP_002571033.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] gi|163669916|gb|ABY36282.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl] gi|222450441|gb|ACM54707.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus sp. Y-400-fl] Length = 437 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ ED L R+++ + GY NG +E A++ PD+I++D+ + + GL Sbjct: 5 ARILVAEDEPDVGMLLREILVSEGYEVELVPNGHLLVERAQEQPPDLILVDLLMPLMDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +Q++ D+ +P++ +TA + G + YI KP + + ++ + Sbjct: 65 EAIRQLRNDTRTSHLPMLILTALGESSRIVEGLETGADDYIVKPYEREVLLARVRSQLRR 124 Query: 123 A 123 A Sbjct: 125 A 125 >gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 223 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED + KL RD + G+ + NG+E LE+ + + +++I+DI + + G ++ Sbjct: 3 ILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMIPYLDGWKV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K I+E L ++P+I +TA + + D+ + G + Y++KP S + + +K + + Sbjct: 63 CKNIRE---LSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRS 118 >gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + + GY + ++G EALEL ++ P +I++D L G+ Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S ++P+I +TA D G + YI+KP + I+ + Sbjct: 67 VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122 >gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510] gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510] Length = 249 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+D+ + D + SG+ +G E + Q D+II+D+ L G Sbjct: 5 RHLLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGREMARVLAQWPVDLIILDLMLPGEDGT 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ S PVI +TA + D + G + Y+ KP S + I+ + Sbjct: 65 SLCRSLRAKSGT---PVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILRR 121 >gi|158423478|ref|YP_001524770.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158330367|dbj|BAF87852.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 149 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 84/121 (69%), Positives = 107/121 (88%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLF DL+E GY ++TRNG+EA++LARQH+PD+I+MDIQL E+S Sbjct: 28 MAKTVMIVEDNELNMKLFHDLLEAHGYHTVETRNGIEAMDLARQHRPDLILMDIQLPEVS 87 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K D+EL+ IPV+AVTAFAMKGDEERIR GGCEAY+SKPIS++ F+ET++++ Sbjct: 88 GLEVTKWLKADAELKAIPVVAVTAFAMKGDEERIRAGGCEAYLSKPISVAKFLETVRRFA 147 Query: 121 G 121 G Sbjct: 148 G 148 >gi|158337175|ref|YP_001518350.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158307416|gb|ABW29033.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 253 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 65/122 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ +L +E +GY Q +G++ LA Q PD+II+D+ L ++ Sbjct: 1 MKTRILVIDDDPAIAELVAINLEMAGYDVAQATDGIKGQALAVQLLPDLIILDLMLPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++++ D +IP++ +TA + D+ G + Y++KP L + ++ + Sbjct: 61 GFTICQRLRRDQRTADIPILMLTALSQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ] gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ] Length = 735 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDNE+N + R+ + +G +G E +E + D ++MD+Q+ + G+ Sbjct: 608 ARILLVEDNEVNQFVAREFLTKAGLKVTCAAHGGEGVEWIKNSVFDAVLMDMQMPVMDGV 667 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ I++ +++P+IA+TA AM+ D + G + Y+SKPI +E + K+I Sbjct: 668 QATQLIRKLPAGRQLPIIAMTAAAMEADRQTCLDAGMDDYLSKPIVPLEILEKLIKWI 725 >gi|115525387|ref|YP_782298.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] gi|115519334|gb|ABJ07318.1| response regulator receiver protein [Rhodopseudomonas palustris BisA53] Length = 121 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 83/121 (68%), Positives = 104/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY + T NG EALEL R+ +PD+I+MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYQTMGTSNGYEALELTRKLRPDLILMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLEVTKWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W] gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W] gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + G Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 FQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D E + + ++E + +G+EA++L + D+ I+DI + + Sbjct: 1 MKPSILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ + + E IPVI ++A A D +GG + YI+KP + + +K + Sbjct: 60 GMEVLHVL--NREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1157 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK++IV+D+ N+ ++T +G E+L + D+++MDI + ++ G Sbjct: 1037 KKILIVDDDMRNIFALSSALQTYDMQVEIANDGEESLTKLEETAGIDMVLMDIMMPKMDG 1096 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ + ++P+IA+TA AMK D ++ + G YI+KP+ + + ++ ++ Sbjct: 1097 YDAMRHIRKQQKWAKLPIIALTAKAMKEDRDKCIEAGANDYITKPVDVDRLLALMQIWLE 1156 Query: 122 E 122 + Sbjct: 1157 Q 1157 Score = 107 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 2/108 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED++ + +D + GY ++ +G +A+E + + PD +I+DI L G +I Sbjct: 765 VVIVEDDKNFAAILQDYAKEHGYQSILVHDGDQAVETVQNNHPDAVILDIMLPGKDGWQI 824 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 K++K D E IPV ++A + R K G +++ KPI+ + Sbjct: 825 LKELKNDPETAGIPVHLMSAGDAAVNRVR--KEGAISFLKKPINTEVL 870 Score = 91.0 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 52/103 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED+++ R+L+E G Q +G A + + + +I+DI L +ISGL Sbjct: 886 KQILLIEDHKMQSHALRELMEKQGITVDQAFDGESAFRMLTESEYQCVILDINLPDISGL 945 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ +IKE E+PVI TA + A + K Sbjct: 946 DLLDKIKEVERFAELPVIVNTAMELDKTSVSRLMQYANAMVVK 988 >gi|322418727|ref|YP_004197950.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125114|gb|ADW12674.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 258 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + +E GY+ +G EALE R K D+II+D+ L I G E Sbjct: 7 HILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVRMEKFDLIILDVMLPGIGGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +PV+ +TA + + D G + Y+ KP +L F+ + + + Sbjct: 67 VCQKIRALD--SRVPVLMLTARSAESDRISGLAAGADDYLIKPFNLKEFLLRVSGMLRRS 124 >gi|189183991|ref|YP_001937776.1| response regulator PleD [Orientia tsutsugamushi str. Ikeda] gi|189180762|dbj|BAG40542.1| putative response regulator protein [Orientia tsutsugamushi str. Ikeda] Length = 489 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D E N KL + T Y NG EA+++ K DV+++DI + + Sbjct: 1 MTAAILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEAIKIDVVLLDIVMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K IK + + IPVI +TA + D+ + + G + +++KPI +K + Sbjct: 61 GFELCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 40.9 bits (96), Expect = 0.068, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 13/94 (13%) Query: 40 ELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK----GDE---- 91 ++A PD++I++ Q+ L + ++ EL++ + +T +++ D Sbjct: 214 KIATSLVPDLLIINNQIILEDPLRVYAILRSKDELKQSAFMLLTEDSLENRDYDDISTDK 273 Query: 92 -ERIRKGGCEAYISKPISLS--IFMETIKKYIGE 122 + + G + P S+ + IK + Sbjct: 274 LLKGLEMGINDFF--PYSIDNNELLARIKTQLRR 305 >gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 225 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++++ED +L +E G+ L+ +G LE AR PD+I++D+ L + G Sbjct: 1 MKTILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSELPDLILLDLMLPGLMG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 EI K +K++ + IP++ +TA + D + G + YI KP S+ + I+ + Sbjct: 61 TEICKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVL 119 >gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 236 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ KL +E +GY + NG +A E ++I++DI L I G ++ Sbjct: 6 ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIMLPGIDGFDV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ ++IP+I +TA + D+ + G + Y+ KP S I+ + Sbjct: 66 CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKR 123 >gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 333 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SGY L +G ALE A +PDV+++D + + G E+ Sbjct: 30 VLIVDDVPDNVSVLHDALDESGYTVLVATSGEAALERAAHARPDVVLLDALMPGMDGFEV 89 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K D+ IP++ +T A E + G Y++KPI + I ++ A Sbjct: 90 ARRLKRDAATAHIPIVFMTGLAETEHVEAAFEAGGVDYVTKPIRPREVIARIAAHVRGA 148 >gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 225 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ GY +G+ L AR+ PD+I++D L +SG++I Sbjct: 6 ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++ +P+I +TA GD G + YI KP +L + ++ + Sbjct: 66 CKRLRQTGN--NVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121 >gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 225 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ + + Y+ +G EL D+I++D+ L ++ G+ Sbjct: 2 RILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLPKMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +L P++ +TA D+ G + Y+ KP L I+ + Sbjct: 62 LCRKLRSQGDL--TPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRR 118 >gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1240 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 71/117 (60%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ LN ++ R+ + G NG +A+ + +Q D+++MD+Q+ + GL Sbjct: 883 RILVVDDSALNREVAREFLVDVGIKVSTASNGEQAIRMIKQANYDLVLMDVQMPVMDGLT 942 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ED++ +++P+IA+TA A D +R G +++KPI + TI ++I Sbjct: 943 ATQIIREDNQYKQLPIIAMTAHASPDDYKRSLDSGMNDHLNKPIDHQLLYRTITRWI 999 Score = 87.1 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEIS 60 ++V+DN + ++ D++ + G +G AL+ DV+ +D + I+ Sbjct: 733 LVVDDNAMAREVLADILSSLGIEVTTVADGYAALDELESATSSDSPYDVVFLDWNIPAIN 792 Query: 61 GLEITKQIKEDSELQEIPV--IAVTAFAMKGDEERIRKGGCEAYISKPISLS 110 G+E K+I E++ + PV + VTA+ + E + + ISKP+ S Sbjct: 793 GVETAKKI-ENNINIKPPVAMLMVTAYDVDRVETDAHQANIKKIISKPVDAS 843 >gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ + KL ++E +GY L+ + +++ QH PD+I++DI + +I G ++ Sbjct: 3 ILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIMMPKIDGFDV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ SE +P+I ++A + D + G + Y+ KP S + ++ + Sbjct: 63 CRQIRRSSE---VPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRR 117 >gi|37679342|ref|NP_933951.1| hypothetical protein VV1158 [Vibrio vulnificus YJ016] gi|320156916|ref|YP_004189295.1| two component response regulator [Vibrio vulnificus MO6-24/O] gi|37198085|dbj|BAC93922.1| conserved hypothetical protein [Vibrio vulnificus YJ016] gi|319932228|gb|ADV87092.1| two component response regulator [Vibrio vulnificus MO6-24/O] Length = 304 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 67/117 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+KL L++ GY+ + AL + ++ KPD+I++DI + E+ G E+ Sbjct: 10 ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKKPDLILLDIMMPEVDGYEL 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +Q+K+D Q+IPVI ++A D+ R + G YI KP + + ++ + G Sbjct: 70 CRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAG 126 >gi|300726408|ref|ZP_07059858.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella bryantii B14] gi|299776308|gb|EFI72868.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella bryantii B14] Length = 937 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++DN + R L++ Y L+ +G L +AR+ PD+II DI + + GLE Sbjct: 667 ILIIDDNNDMREYLRILLKAQ-YHVLEAVDGKIGLSMARKQVPDIIICDIMMPVMDGLEF 725 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ +K+D+ IPVI ++A ++ + + + G ++YI+KP + + I + Sbjct: 726 TRALKKDTVTSHIPVILLSARSLDEQKVQGYQEGADSYITKPFQADVLIARIDNLL 781 >gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED +L + +G+ G +AL R+ +PD+I++D+ L + G E Sbjct: 6 RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDGFE 65 Query: 64 ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ PV+ +TA D + G + Y++KP +L + I+ + Sbjct: 66 VVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V IVED + +++ + +E SGY +NG E L R+ PD +I+D+ L ++ Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI KQI+ ++P++ ++A + + D G + Y++KP S + ++ + Sbjct: 61 GEEICKQIR---LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 1325 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDNE+N ++ L+E +G NG EALE D+++MD+Q+ + G+ Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ + + +P++A+TA AM D ER + G ++SKPI + F + +K+++ Sbjct: 1052 TATKHIRTNGRWKNLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL + D++ D + ++G+ Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ ++K VTA+ + + +A I KP++ S ++ I Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965 >gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20] gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E K ++ GY +G L+ A ++ DVI++D+ L E++G Sbjct: 1 MSKVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E ++ P+I +TA D G + Y+ KP ++ + I+ + Sbjct: 61 LEVARRLRES---KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Paenibacillus polymyxa SC2] gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Paenibacillus polymyxa SC2] Length = 224 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ +L + G ++ +G++A+ L + K D++++DI + + G Sbjct: 1 MTRVLVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E + ++P++ +TA + G + Y+ KP + + +K + Sbjct: 61 WELCRKLREQT---DLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] Length = 1325 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDNE+N ++ L+E +G NG EALE D+++MD+Q+ + G+ Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ + + +P++A+TA AM D ER + G ++SKPI + F + +K+++ Sbjct: 1052 TATKHIRTNGRWKNLPIVAMTANAMAADIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL + D++ D + ++G+ Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ ++K VTA+ + + +A I KP++ S ++ I Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965 >gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D++ ++ ++ G+ A+ NG A E + PD++++D+ L ++G+E Sbjct: 8 TILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLDLMLPGMNGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +QI+ S +P+I +TA + D + + G + YI+KP + + I+ + Sbjct: 68 VCQQIRRSS---NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLR 122 >gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+K +++VED++ ++ Y NG +A+ LA HKPD+II+D+ L +I Sbjct: 1 MMKVSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAMILATSHKPDIIILDLGLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G++I K+I+ P+I V+A + D+ G + Y++KP S+ + I+ Sbjct: 61 DGVDIIKKIRA---WSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVA 117 Query: 120 IGE 122 I + Sbjct: 118 IRK 120 >gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+ G+ NG++A+ ++ D++++D+QL SG Sbjct: 1 MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRQLRQRS---TVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330998135|ref|ZP_08321963.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329569224|gb|EGG51015.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 865 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ EDNE +DL+ + L +G E L +AR++ PD+II D+ + + G Sbjct: 610 TVLVAEDNEQFRTFMKDLLRQE-FTVLTAADGQEGLAMAREYGPDLIISDVMMPHMDGYA 668 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + IP+I +TA + G +++I+KP + + I++ + + Sbjct: 669 FCRAVKDDVQCCHIPLILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIRQLLEQ 727 >gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 224 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + IK Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|150006467|ref|YP_001301211.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] gi|149934891|gb|ABR41589.1| two-component system sensor histidine kinase [Bacteroides vulgatus ATCC 8482] Length = 379 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + L+ + + NG EAL A +PD+I++D+ + E++G E Sbjct: 15 TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAVNARPDLILLDVMMPEMNGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K D E Q IP+I +TA D + K G +ISKP + + + Sbjct: 75 VAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRV 127 >gi|148269592|ref|YP_001244052.1| response regulator receiver protein [Thermotoga petrophila RKU-1] gi|147735136|gb|ABQ46476.1| response regulator receiver protein [Thermotoga petrophila RKU-1] Length = 122 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D+ + K+ ++ GY ++ NG ALE + PD+I++DI + + Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E + IPVI +TA + DE G + KP S S F+E +K + Sbjct: 61 GFTVLKKLQEKENWKRIPVIVLTAKGGEEDESLAFSLGARKVMRKPFSPSQFIEEVKHLL 120 Query: 121 GE 122 E Sbjct: 121 NE 122 >gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 223 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 1 ML---KKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQL 56 M+ +++V+D + + +E SG N A E+ + PDVII DI + Sbjct: 1 MMSDSATILLVDDEPSVRESVQAYLEYSGNLTVKVASNATNAWEILQTIIPDVIISDIMM 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G + +++++D Q IPV+ +TA M D + GC+AY+ KP + Sbjct: 61 PEVDGYQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKPFDPEELEAIV 120 Query: 117 KKYIGE 122 + Sbjct: 121 NNLLER 126 >gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L D ++ +GY+ + +G AL ++ +PD+I++D + + G E Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIK+ + IPV+ +TA + G Y+ KPI + + + ++ A Sbjct: 73 CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 >gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 226 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IVED ++ +E GY +G+ ALE Q +I++D+ L +SG+ Sbjct: 4 ARILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSGM 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+++ PVI +TA D+ G Y++KP + + I+ + Sbjct: 64 EVLRRIRKEGNT--TPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLR 120 >gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ Q K D++I+DI + + G ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 68 CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ +K+ E Y + +NG EA+E + PD+I++DI + ++ Sbjct: 1 MGYKILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTA-PDIILLDINMPQMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ + P++ +TA + D G + YI KP SL I ++ Sbjct: 60 GLEVCRKIR---DKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHL 116 Query: 121 GE 122 Sbjct: 117 KR 118 >gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family [Chloroherpeton thalassium ATCC 35110] gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family [Chloroherpeton thalassium ATCC 35110] Length = 239 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+I+ED+ L + + G +G+ +E A + DVII+D+ L ++ GL Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++++ L +P++ +T+ + + D+ G + YI+KP S+ + +I Sbjct: 64 EVCQRLRKNHIL--VPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRR 121 >gi|150002641|ref|YP_001297385.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931065|gb|ABR37763.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1349 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + + + Y L++ NG EALE PD++I D+ + E+ GL Sbjct: 1090 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1148 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK++ L IPVI +TA + D + G +AY++KP + I +T I Sbjct: 1149 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTTANLIR 1206 >gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 250 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED+ L D G+ +G L A + D+II+D+ L + G Sbjct: 25 RSILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGF 84 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +Q+++ S PVI +TA + D G + Y+ KP + I+ + Sbjct: 85 EVLRQLRKRSAT---PVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRR 141 >gi|265753017|ref|ZP_06088586.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] gi|263236203|gb|EEZ21698.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] Length = 1331 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +ET Y ++ NG EAL++ + +I+ D+ + E+ G E+ Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K D E IP+I +TA + + G + YI KP S + I + Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1198 >gi|237711589|ref|ZP_04542070.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] gi|229454284|gb|EEO60005.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] Length = 1331 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +ET Y ++ NG EAL++ + +I+ D+ + E+ G E+ Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K D E IP+I +TA + + G + YI KP S + I + Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1198 >gi|237725951|ref|ZP_04556432.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D4] gi|229435759|gb|EEO45836.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides dorei 5_1_36/D4] Length = 1331 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +ET Y ++ NG EAL++ + +I+ D+ + E+ G E+ Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K D E IP+I +TA + + G + YI KP S + I + Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1198 >gi|213961802|ref|ZP_03390068.1| putative DNA-binding response regulator/sensor histidine kinase [Capnocytophaga sputigena Capno] gi|213955591|gb|EEB66907.1| putative DNA-binding response regulator/sensor histidine kinase [Capnocytophaga sputigena Capno] Length = 903 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDNE + R ++ S Y ++ NG E E+A++H PDV+I D+ + + G + Sbjct: 655 TVLIVEDNEDMRQFIRYILSDS-YNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDGFD 713 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K + IPVI +TA+A+ ++ + G +AYISKP ++ + ++K I Sbjct: 714 LCQLLKTNVATNHIPVILLTAYALDEQKQVGFESGADAYISKPFNVKLLKTRVRKLI 770 >gi|212695373|ref|ZP_03303501.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855] gi|212662102|gb|EEB22676.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855] Length = 1389 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +ET Y ++ NG EAL++ + +I+ D+ + E+ G E+ Sbjct: 1142 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1200 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K D E IP+I +TA + + G + YI KP S + I + Sbjct: 1201 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLL 1256 >gi|167764904|ref|ZP_02437025.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183] gi|167697573|gb|EDS14152.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183] Length = 1473 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ + + + ++ NG+ LE ++++ PD+II D+ + E G+E Sbjct: 1211 TILIVEDNQELRFFIKTIFIQH-FNVIEAENGIIGLEKSKKYLPDIIISDVMMPEKDGIE 1269 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ED IP++ +TA + + G + YI+KP S + I I + Sbjct: 1270 MVRELREDMSTSHIPIVMLTAKSTIESRIEGLESGADDYITKPFSAAYLKARIFNLIDQ 1328 >gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 240 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + GY +G E + A D+II+D+ L + G+E Sbjct: 16 RILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGME 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +E E PV+ +TA D+ R G + Y++KP +L+ + ++ + Sbjct: 76 VIRRLR--NERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRR 132 >gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51] gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ +L RD ++ +GY +G L+ A D++I+D+ L ++ G Sbjct: 1 MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K++++ E IP+I ++A + D+ R G + Y++KP S + M I+ ++ Sbjct: 61 FEIIKEVRKKLE---IPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|54309357|ref|YP_130377.1| DNA-binding response regulator OmpR [Photobacterium profundum SS9] gi|46913793|emb|CAG20575.1| hypothetical DNA-binding response regulator OmpR [Photobacterium profundum SS9] Length = 261 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + + Y +G E + R + D+I++D+ L GL Sbjct: 15 HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEMEQCLRDNSIDLIVLDLMLPGKDGLT 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ IPVI +TA + D+ + G + Y+ KP + + +K I Sbjct: 75 LCRELR---VHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARVKAVIRR 130 >gi|295084690|emb|CBK66213.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1344 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208 >gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 236 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D L +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPVI +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 247 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+ L + +GY +G A+ A +PD+I++D+ L + G Sbjct: 12 TVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFR 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +T++++ PV+ +TA A D G + Y++KP + + ++ + A Sbjct: 72 LTRELRAQGVY--TPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRA 129 >gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L D ++ +GY+ + +G AL ++ +PD+I++D + + G E Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQRRRPDLILLDAMMPGMDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIK+ + IPV+ +TA + G Y+ KPI + + + ++ A Sbjct: 73 CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 >gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein SYNPCC7002_A0851 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] Length = 251 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 9/127 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-------DVIIMDIQ 55 ++++VED + + +E GY NG L + + + D++I+DI Sbjct: 19 ARILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIM 78 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 L E++GL++ + ++ IP++ ++A A + D + G + Y++KP SL + Sbjct: 79 LPEVNGLDLCRFLRYQGNT--IPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVAR 136 Query: 116 IKKYIGE 122 + + Sbjct: 137 CRALLRR 143 >gi|17232372|ref|NP_488920.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134017|dbj|BAB76579.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 443 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ + + +G+ +G +ALE + PD+I++D+ + + G E Sbjct: 11 ILIVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQIRVPDLILLDVMMPIMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K E +IPVI +TA + G YI+KP + + I ++ Sbjct: 71 CKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISSHL 126 >gi|163846005|ref|YP_001634049.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222523730|ref|YP_002568200.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667294|gb|ABY33660.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222447609|gb|ACM51875.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 493 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 65/116 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+EL L ++I + + G +AL+LA+QH PD+I++D+ L +++G E Sbjct: 5 TILIVDDDELMRSLLIEIITPFNLRLITAQRGDQALQLAQQHLPDLILLDVMLPDMNGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +++++D +IP++ +TA + + + G + +I+KP I Sbjct: 65 VCQRLRDDPATAQIPIVMITALNDREAKIHGFEAGADEFITKPFDPGELQARINTV 120 >gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 233 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +D+ KL R ++ GY L+ +G+EA E + ++ ++DI + G + Sbjct: 11 RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIMMPNKDGYQ 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ED ++PVI +TA D+E + G + Y++KP + IK + Sbjct: 71 LCREIRED---YDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRR 126 >gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IVED+ +L RD +E + Y +G L+ A Q +I++D+ L + G Sbjct: 1 MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + ++ + +P+I V+A D+ R G YI KP + S + +K I Sbjct: 61 FQVCRNLRAS---KNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116 >gi|260885496|ref|ZP_05735136.2| DNA-binding response regulator/sensor histidine kinase [Prevotella tannerae ATCC 51259] gi|260852493|gb|EEX72362.1| DNA-binding response regulator/sensor histidine kinase [Prevotella tannerae ATCC 51259] Length = 952 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+EDN+ + + Y NG L+ A + PD+II D+ + E+ GL+ Sbjct: 669 RILIIEDNKDVAAYIGSQLTSR-YSVCYAENGKVGLQKAEELVPDLIITDLMMPEMGGLD 727 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + + IP+I +TA + D + + G +AY+ KP + ++K + + Sbjct: 728 VCRAIRTNEIVNHIPIIVITAKNTEEDRIKGLEAGADAYLVKPFNSEELRTRVEKLLEQ 786 >gi|256842620|ref|ZP_05548121.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256735757|gb|EEU49090.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 1321 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 7/127 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ L++ Y+ NG +AL +AR++ PD+I+ D+ + E+ G Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI------ 116 E+ +K D E IPV+ +TA + D + G +AYI+KP S+++ I Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187 Query: 117 KKYIGEA 123 + + A Sbjct: 1188 RALLRRA 1194 >gi|254410981|ref|ZP_05024759.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC 7420] gi|196182336|gb|EDX77322.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC 7420] Length = 127 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED+ L L+E G + +G+EALE +Q P+++I+DI L ++G Sbjct: 1 MSTVLVVEDDLTQQHLLSKLLERVGLTVIVAGDGVEALEKIQQFHPNLVILDIVLPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K + E + IPV+ +A D K G +AY++KP +ET+KK + Sbjct: 61 YEVCRRLKSEPETENIPVLMCSAKKEDFDRYWGMKQGADAYLAKPCHPQEIVETVKKLL 119 >gi|171914581|ref|ZP_02930051.1| putative two component system histidine kinase/response regulator fusion protein [Verrucomicrobium spinosum DSM 4136] Length = 380 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D N+++ +L+ G+ + G EAL PD+I++D+ + E+ G E+ Sbjct: 14 VLVVDDQVRNLQMVTNLLTHRGFEVITASGGREALNCLATKIPDLILLDVIMPEMDGFEV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QIK + +PV+ ++ A + R + G YI+KP + + + + ++ Sbjct: 74 CRQIKSNRATSHVPVVFLSGSADQSSIVRGFETGGVDYIAKPFNKAELLARVLTHV 129 >gi|237724054|ref|ZP_04554535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|265755338|ref|ZP_06090108.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229437514|gb|EEO47591.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] gi|263234480|gb|EEZ20070.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 1351 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN ++ + Y ++ + G+E ++A + P++II D+ + ++G+E+ Sbjct: 1102 ILLVEDNTEFRNFLKEELNKW-YQVIEAKEGLEGEKIAIERDPNLIISDVMMPIMNGIEL 1160 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++K + + IP+I +TA D+ + G ++Y+SKP + I + I+K I + Sbjct: 1161 CKRLKNNIQTSHIPIILLTARISDEDKMTGYEAGADSYLSKPFNFDILLTRIRKLIEQ 1218 >gi|255533889|ref|YP_003094261.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346873|gb|ACU06199.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 1374 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED L R++++ Y+ + G+EAL + PD+II D+ + +++GLE+ Sbjct: 1119 ILLVEDEPELRYLIRNVLKEQ-YVVYEAGTGVEALAFLYKTLPDLIISDVMMPDMNGLEL 1177 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K+ + +IP + ++A + ++ + G +AYI KP ++ + I+K + Sbjct: 1178 CRTVKQTPAMAQIPFVILSARGSEDNKAEGYELGADAYIPKPFQINYLLVRIRKLL 1233 >gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 247 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++++D+ ++ + + G+ RNG + L+ A + K D++I+D+ L ++G + Sbjct: 23 LLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLPGMNGFTLL 82 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q++ + +PVI +TA D + + G + Y+ KP + ++ + A Sbjct: 83 SQLRRRTP---VPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRA 137 >gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 234 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+ + D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|297538855|ref|YP_003674624.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297258202|gb|ADI30047.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V++++D+ +++ ++ IE + +G+ ++ + D++++D+ + ++G Sbjct: 1 MQTVLLIDDDVELVEMLKEYIEQENFSVQVAHDGIAGAQMLLEQPFDIVVLDVMMPRLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K I++ S +PVI +TA D + G + Y+ KP S + I+ + Sbjct: 61 IETLKAIRQHS---NVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 274 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 61/123 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ + VED+E +L +E+ + +G ++ + PD++++DI L S Sbjct: 46 MMPCIYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLPGES 105 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI K+I+ ++PVI +TA + D + G + Y++KP + + I+ + Sbjct: 106 GIEILKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVL 165 Query: 121 GEA 123 + Sbjct: 166 RRS 168 >gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ ++ G+ L+ +G EALE+ + ++ ++IMD+ + ++ G Sbjct: 1 MQTILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEILKNNEVHLLIMDVMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E+S IP+I ++A D+ G + Y+ KP + + +K + Sbjct: 61 IRATLKIRENS---SIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH 1] gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH 1] Length = 239 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I ED+ +L+ GY +G+ A ++ K D++ +D+ + SG Sbjct: 1 MPRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + ++ + PVI +TA + D+ + G + YISKP + +K + Sbjct: 61 FDVCRLLRAEDH--RTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D E L +E +G+ G E LE +++ PD+I++DI + G + Sbjct: 9 ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMPGEDGFSV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ E +PVI ++A + D+ + + G + YI KP S I + + Sbjct: 69 CERVRAQYE---VPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRS 124 >gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas tunicata D2] gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas tunicata D2] Length = 312 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +++ +++V+D+ LN+ + + ++ Y L NG EAL++ + D+I++DI++ ++ Sbjct: 14 MERALILVVDDDPLNLVVLKQTLQKY-YRVLSASNGQEALDVVSSNTIDLILLDIKMPKM 72 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K++K + Q IPVI ++A DE + + G YI+KP S I + +K Sbjct: 73 DGYQVLKKLKNSPQTQSIPVIFISANDSHADEAKGLEMGAMDYITKPFSPPIVLVRVKNQ 132 Query: 120 I 120 + Sbjct: 133 L 133 >gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing protein [Prevotella denticola F0289] gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola F0289] Length = 896 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R + Y + +G LELAR+ PD+++ DI + + GLE Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARRIMPDLVVSDIMMPVMDGLEF 713 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K+D + IPVI +TA ++ + G +AYISKP SL + + I I Sbjct: 714 CRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLI 769 >gi|319944548|ref|ZP_08018818.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC 51599] gi|319742184|gb|EFV94601.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC 51599] Length = 248 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ L + + +G R+ E ++ + +PD+II+D+ + GL Sbjct: 16 HVLVVDDDAEIRTLLAEYLSQNGIRVTVARDATEMRQVFDEARPDIIILDLMMPGEDGLT 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S +PVI +TA A + D + G + Y+ KP S + IK + Sbjct: 76 VCRELRSRS---NVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRR 131 >gi|282890755|ref|ZP_06299275.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499348|gb|EFB41647.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 410 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D L + R ++ + Y L +NG EALE ++ K ++I D+ + + G Sbjct: 7 KTILVVDDTPLQAIMLRRVLVQANYDVLTAKNGAEALEFLKKQKFALVITDVNMPIMDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + IK D L+ PVI T A D + + G + YI+KP + + + IK+ +G Sbjct: 67 KLCRIIKTDLNLRSTPVIICTVLASPEDLIKGIEAGADNYITKPWNNDLLLLRIKELVGR 126 Query: 123 A 123 + Sbjct: 127 S 127 >gi|265751167|ref|ZP_06087230.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263238063|gb|EEZ23513.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1270 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN+ + R L+ Y NG EAL+L + PD++I D+ + + G+E Sbjct: 1020 HILVVDDNQDLLDYLRMLLAPR-YQITCALNGKEALDLLSELMPDLVISDVMMPVMDGME 1078 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ +PV+ +TA GD + G + Y++KP S I I + Sbjct: 1079 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLL 1135 >gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] Length = 239 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 10 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 69 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 70 GLEVVRIIREKSA---VPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGI 126 Query: 121 GEA 123 + Sbjct: 127 RRS 129 >gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ GY +G+ L AR+ PD+I++D L ISGL+I Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++ ++P+I +TA D G + YI KP +L + ++ + Sbjct: 66 CKRLRQTG--SKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121 >gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 221 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 74/123 (60%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ + ++++ SGY+ +G+ A+E+ R+ + D+II+D+ L +I Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +P+I +TA + DE + + + YI KP S+++ ++ ++ + Sbjct: 61 GFVVCEIIRKES---SMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] Length = 240 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN+ + +L++ GY L+ +GMEAL++ + D+I++D+ + ++GL Sbjct: 5 KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVMMPRLNGLS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++E S IPVI ++A + D+ G + YI KP + + + +K ++ Sbjct: 65 ALMKLREKSR---IPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRR 120 >gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 246 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + R + GY +G++A+ A + D I++D+ L I G E Sbjct: 2 RVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ +TA D R G + Y+ KP S ++ + Sbjct: 62 VCRRLRAGHRWA--PVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 118 >gi|118580478|ref|YP_901728.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] gi|118503188|gb|ABK99670.1| response regulator receiver protein [Pelobacter propionicus DSM 2379] Length = 217 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D N++L + Y NG EAL +A +PD+I++DI + E+ G Sbjct: 4 QRILIVDDTPENLQLLYRTLRDE-YDLYGATNGREALMIAAAQQPDLILLDIMMPEMDGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K EL+++PV+ +TA + DE R + G YI+KP ++ I ++ Sbjct: 63 EVCRRLKSSEELRDVPVLFLTALSEDSDELRGLEIGAVDYITKPFKTAVVKRRIDTHL 120 >gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 231 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL RD + + + ++ +G EAL + + K +II+D+ + ++ G Sbjct: 5 KILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDKNVALIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+++S+ +P+I +TA + + DE + G + YI+KP S I + ++ + Sbjct: 65 QVCREIRKESK---VPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRR 121 >gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [uncultured Desulfobacterium sp.] Length = 242 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E +L R + + GY +G EA++LA D+I++D+ L I G++ Sbjct: 16 RILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIGGID 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ IP+I +TA + + D + Y++KP S I I + Sbjct: 76 VAKRLRSVHNTINIPIIMLTAKSEETDIISGLTL-ADDYVTKPFSPKILSARISAILRR 133 >gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Query: 1 MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M K +++V+D +L + +G+ +G EA+E+ + P++I+MD+ L Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I G +T++I+++ ++PV+ +TA D+ G + Y++KP SL + I Sbjct: 61 PDIDGFTVTRRIRQNGI--KVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 117 KKYIGE 122 + + Sbjct: 119 RAILRR 124 >gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869] Length = 785 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 ++V++V+D+ N+ L+E NG +ALE Q + D+++MDI + E+ G Sbjct: 663 RRVLVVDDDVRNIFAITSLLEAQDIDVRFAENGRQALERIEQDRDIDLVLMDIMMPEMDG 722 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+E + +P++A+TA AM+GD + + G YI+KPI + ++ ++ Sbjct: 723 YAAIRAIREKPQWSTLPIVALTAKAMQGDRAKCIEAGATDYITKPIDAEQLLSLLRVWL 781 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVE +E ++ D+ G+ L +G E LELAR P I +++ L ++ G + Sbjct: 399 LIVESDESFAQILYDVAREHGFRTLVALSGAEGLELARALTPAAITLELTLPDMDGWVVL 458 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++K D + IPV ++A DE R RK G A + KP + ++ Sbjct: 459 DRLKHDLATRHIPVQIISALG---DEHRARKRGAIACLHKPANAEWLARAMQA 508 Score = 58.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 11 NELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKE 70 +E + I + +G EALE D ++ +++ +SGLE+ ++ Sbjct: 525 DERQRERLAAFIGNGDVKVVAVGSGEEALERLDGELFDCAVVALKMAGMSGLELIRRATA 584 Query: 71 DSELQEIPVIA-VTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 + L+ +P++ V A +E + ++++ K + S +E Sbjct: 585 ITGLRHLPILVYVEADPTAAEEAELLSL-AQSFVVKSVHSPERMLE 629 >gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 2099 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++E G L G EA+++ +++MDI + + G Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ + + +P++A+TA AMKGD E+ + G Y++KP++ + ++ ++ Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ ++ DL SG+ L G +AL LA+ ++P I +DI L ++ G + Sbjct: 1714 LVVEDDAHYARVLVDLARDSGFKVLVAMRGSDALSLAQDYRPAAISLDIFLPDMLGWTVL 1773 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 Q+K++ + + IPV ++ + D + G A++SKP + + +K Y Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1827 Score = 96.0 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VEDNE L+ +G EAL RQ PD +++D+ L ++SG Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQDPPDCVVLDLSLPDMSGF 1892 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ +QI++D+E+ E+PV+ T + +E+ + + K + S ++ Sbjct: 1893 DVLEQIRDDAEIGEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945 >gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas veronii B565] gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas veronii B565] Length = 1131 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +N+ + R L++ GY L + +G +AL + D+I++D+ + +SG ++ Sbjct: 724 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAEEPVDLILLDVMMPTLSGFDV 783 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---- 120 +++++ +PV+ +TA D E G Y+ KP +K + Sbjct: 784 CRRLRQQHPKDMLPVLLLTALNQPKDIEEGFGAGANDYLVKPFCKEELFARVKALLEAKA 843 Query: 121 GEA 123 G A Sbjct: 844 GRA 846 >gi|325300130|ref|YP_004260047.1| histidine kinase [Bacteroides salanitronis DSM 18170] gi|324319683|gb|ADY37574.1| histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1442 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN+ D++ Y L NG ++AR+ PD+I+ D+ + + GLE+ Sbjct: 1181 ILIVEDNDELRTSLADILSVR-YRVLTAVNGEAGWDMARKELPDMILTDVMMPVMDGLEM 1239 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+K D+E+ IP+I ++A A D + G + YI+KP S + I + + Sbjct: 1240 VRQLKNDAEVCHIPIIVLSAKASLDDRIQALDQGIDDYITKPFSAAYLEARIGQVFRQ 1297 >gi|312877360|ref|ZP_07737325.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795834|gb|EFR12198.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 234 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V +V+D + + L + + GY NG LE + +PD++I+DI L +I G E Sbjct: 5 TVYVVDDEKDILDLVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPDIDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+I+++S ++P+I ++A + D+ + G + YISKP SLS IKK + Sbjct: 65 ICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120 >gi|254413334|ref|ZP_05027105.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179954|gb|EDX74947.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 864 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ ++D N+ L +++ GY NG AL+ + PD+I++DI + ++ G + Sbjct: 12 TILTIDDTPDNLHLLTEMLSAQGYKIRIIPNGRLALKSIANNPPDLILLDIIMPDMDGYQ 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +Q+K + Q IPVI ++ D+ + + G YI+KP + + ++ + Sbjct: 72 VCQQLKASPKTQNIPVIFLSGLNETFDKVKAFEVGGVDYITKPFQVQEVLARVESQLR 129 >gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 2100 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++E G L G EA+++ +++MDI + + G Sbjct: 1981 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2040 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ + + +P++A+TA AMKGD E+ + G Y++KP++ + ++ ++ Sbjct: 2041 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2100 Score = 104 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ ++ DL +G+ L G +AL LA+++KP I +DI L ++ G + Sbjct: 1715 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLAQEYKPSAISLDIFLPDMLGWTVL 1774 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 Q+K++ + + IPV ++ + D + G A++SKP + + +K Y Sbjct: 1775 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1828 Score = 92.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+E L+ +G EAL R++ D +++D+ L ++SG Sbjct: 1834 KQLLLVEDDEAERLSVTALLGHDDIDITSVGSGSEALAALRRNSADCVVLDLSLPDMSGF 1893 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +QI++D E+ E+PV+ T + +E+ + + K + S ++ Sbjct: 1894 EVLEQIRDDVEIGEVPVVVFTGRELSAEEDATLHSMARSVVVKGVESPERLLD 1946 >gi|14133650|gb|AAK54090.1|AF362371_1 histidine kinase DhkI [Dictyostelium discoideum] Length = 1736 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57 +KV++ EDN +N KL + L+ G+ ++G +AL+ + K D I+MDIQ+ Sbjct: 1550 QKVLVAEDNPMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMP 1609 Query: 58 EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 +SGLE T I+E E IP+IAVTA AMKGD+E+ + G + Y++KPI+ + E Sbjct: 1610 ILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1669 Query: 116 IKKYI 120 I I Sbjct: 1670 INTQI 1674 >gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1] Length = 1386 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 57/116 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN + L+ + GY +G +ALE R PD++I D+ + + GL Sbjct: 629 ARVLVADDNADMREYLGRLLRSDGYAVEAVVDGRQALEAIRAEPPDLVISDVMMPRLDGL 688 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + +++ D +PV+ ++A A + + G + Y+ KP + + + ++ Sbjct: 689 GLVSELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRA 744 >gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM 519] gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii] Length = 228 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D L +K + +E G+I + +G +ALE + D+I++D+ L I G Sbjct: 1 MANILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPIIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++E ++P+I ++A + + + G + YI+KP ++ + + Sbjct: 61 FEVCKKVRE---TSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 219 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + + + Y +G L+ A D+II+D+ L I+G Sbjct: 1 MTNILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLMLPNING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +QI+++ P+I +TA D+ G + YI KP + + I+ + Sbjct: 61 LEICRQIRQE---YSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVED ++ ++ +D + Y+ + R+G EAL + + + D++I+DI L E+ Sbjct: 1 MSKIILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ E+P+I +TA + D + G + Y++KP S I + K+ + Sbjct: 61 GWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLL 117 >gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 241 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + +E G+ R+G E L ++++D+ L GL Sbjct: 8 HILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLMLPGEDGLT 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ S L PV+ +TA + D + G + Y++KP + + I+ + A Sbjct: 68 LCRDLRARSSL---PVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRA 124 >gi|218887570|ref|YP_002436891.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758524|gb|ACL09423.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1071 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 73/123 (59%), Gaps = 6/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+E+N+ + L+ GYIA + +G +ALE+ + D ++MDIQ+ ++ G+E Sbjct: 941 RILVVDDDEVNLITAQRLLTRLGYIADRAASGRQALEMLGRDHYDAVLMDIQMPDMDGME 1000 Query: 64 ITKQIKEDSEL------QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T+QI+ + +PV+A+TA AM GD ER G Y++KPI + ++ Sbjct: 1001 ATRQIRMREAVLPGTTPPWVPVLALTAHAMLGDRERFLAAGMNDYLAKPIEIDQLDARLR 1060 Query: 118 KYI 120 ++ Sbjct: 1061 AHL 1063 >gi|330504989|ref|YP_004381858.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919275|gb|AEB60106.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 778 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 59/117 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN +N + R ++ GY NG EALEL R D +++D Q+ + G Sbjct: 648 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALELLRGESVDAVLLDCQMPVMDGFA 707 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ ++PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 708 TCRAIRALPGCADVPVLAITAHSHSGDRERCLAAGMSDYLAKPVKFEELRVLLHDWV 764 >gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 966 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 65/112 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++VEDN +N ++ ++ +E G+ +G +A++ R D ++MD+++ + G Sbjct: 706 AKLLLVEDNHINQQIAKETLEQEGFEVSIASDGRDAVQKIRTCYFDAVLMDLEMPIMDGY 765 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 E T+ I+ +++ ++P+IA+TA AM E+ G Y++KPI + + Sbjct: 766 EATRIIRSEAQFSDLPIIAMTAHAMNDVREKCLHIGMNGYVTKPIDVDELLA 817 Score = 96.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEI 59 K ++V+ +E + +++ + G +A++L + +++MD L ++ Sbjct: 554 KALVVDSDETSRNALCLHLKSLFFQVTSVSTGEQAIQLLENACAEDPYRLVLMDWNLPKM 613 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKG--DEERIRKGGCEAYISKPISLSIFMETI 116 G+ + + IK E+ IP +I VT + + +R + + +++KP+ S + Sbjct: 614 DGISVARHIKNSLEIACIPHIIIVTTHSREDVVHVQRSKDLNLDGFLAKPVHASALFSAV 673 >gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 231 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED E L+ G+ + +G AL ++ D++++D+ L +SG Sbjct: 1 MITILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K++++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKRLRK---VSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 234 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + + GY + N E L++ + ++++DI + + GLE+ Sbjct: 6 ILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E IP+I ++A + D+ G + Y+ KP + +K + Sbjct: 66 CRKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] Length = 225 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K+++V+D KL RD + GY L+ +G+EA+++ + ++I+D+ + + G Sbjct: 4 AKILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPRMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+E S+ +P+I +TA + + DE + G + YISKP S I + + + Sbjct: 64 WQVCREIRESSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 2099 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++E G L G EA+++ +++MDI + + G Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2039 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ + + +P++A+TA AMKGD E+ + G Y++KP++ + ++ ++ Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 104 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ ++ DL +G+ L G +AL LA+++KP I +DI L ++ G + Sbjct: 1714 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLAQEYKPSAISLDIFLPDMLGWTVL 1773 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 Q+K++ + + IPV ++ + D + G A++SKP + + +K Y Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGRALSRLKAY 1827 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE L+ +G EAL + RQ D +++D+ L ++SG Sbjct: 1833 KQLLLVEDNEAERMSVTALLGHDDIDITSVGSGSEALAVLRQGSADCVVLDLTLPDMSGF 1892 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +QI++D+E+ E+PV+ T + +E+ + + K + S ++ Sbjct: 1893 EVLEQIRDDAEIAEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945 >gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca DW4/3-1] Length = 2142 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +KV++V+D+ N+ ++E G +G E + L + + ++++MD+ + E+ G Sbjct: 2008 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESGAEGISLLEKDTEVELVLMDVMMPEMDG 2067 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + I+ +P++A+TA AMKGD E+ + G YI+KP+ + + ++ ++ Sbjct: 2068 YQAMRAIRGMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2126 Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED++++ + +L+ + + +A E + D ++MD+ L ++ G ++ Sbjct: 1865 LIVEDDDVHRQALTELLGSEDVQTVAVSTAAQAQEAIAGRRFDCMVMDLGLPDLPGADLL 1924 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 +Q+ + P I T + +E + EA I K S +E Sbjct: 1925 RQLHAEHGASTPPAIVYTGRELTRAQETELRRLAEAIIVKDAQSPERLLE 1974 Score = 49.0 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Query: 18 FRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 R + G+ L + ALE+AR + + +D+ L +++G + ++K D+ + + Sbjct: 1755 LRAAAQGVGFKLLVSTEAESALEMARNARTVAVAVDLDLPDMAGWVVLDRLKHDAATRAL 1814 Query: 78 PVIAVTAFAMKGDEERIRKGGCEAYI 103 PV V+ + +R G ++ Sbjct: 1815 PVYTVSG---EDHRDRSLTLGALGHL 1837 >gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma proteobacterium HdN1] gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma proteobacterium HdN1] Length = 833 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 71/121 (58%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +N ++ L++ G++ NG AL++ + D+I+MD+Q+ + G Sbjct: 709 RILVVEDHPINRQVAVGLLKKLGFVPEVAENGEIALKMMQNQAYDLILMDLQMPVMDGYS 768 Query: 64 ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ +++ + P+IA+TA A+ GD ER + G + Y++KP+ + M + K++ Sbjct: 769 TTRTVRQWEREGRRRTPIIAMTAHALSGDRERCAEAGMDDYLAKPVKAELLMAVLGKWLP 828 Query: 122 E 122 + Sbjct: 829 K 829 >gi|299139599|ref|ZP_07032773.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598527|gb|EFI54691.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 251 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++++D + R +GY +G+ L + PD+++ D+ + ++ G+ Sbjct: 13 KKILVIDDEPSITRALRASFLANGYDVRTAHDGIAGLHVLEDWGPDLVVTDLAMPDMDGI 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 EI +Q++ S IP+I ++ + R G + Y++KP S+ + ++ Sbjct: 73 EICRQVRSKS---SIPIILLSVRDDTESKIRALDAGADDYVTKPFSIDELLARVRTA 126 >gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella veroralis F0319] gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase [Prevotella veroralis F0319] Length = 876 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++DN R ++ Y + +G LEL R+ PD+++ DI + + GLE Sbjct: 635 ILIIDDNSDIRTYLRSVLSQK-YNVSEASDGKRGLELVRRTVPDIVLSDIMMPVMDGLEF 693 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D + IPVI +TA +M + G +AYISKP SL + + I+ I Sbjct: 694 CEQLKTDKAISHIPVILLTARSMDEQRAEGYEHGADAYISKPFSLRLLLSRIENLI 749 >gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS] Length = 1390 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 55/116 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++I +DN L+ +GY +G +ALE R PD+++ D+ + + GL Sbjct: 637 ARILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGL 696 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E+ ++ +S +PV+ ++A A + G + Y+ KP + + + + Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHA 752 >gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] Length = 243 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L + GYI + + +++PD+I++D+ + GL Sbjct: 5 KILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVMMPGEDGLA 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ E +PVI +TA D + G + Y+ KP + I+ + Sbjct: 65 VVRRLRAQGET--LPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRR 121 >gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125] gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125] Length = 222 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + ++ + +E GY +G + LE + H D++++D+ L E+SG Sbjct: 1 MARILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ + P+I +TA D+ G YI+KP + + ++ + Sbjct: 61 LEVLRRIRMTDPV--TPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLR 118 >gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 245 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ NG EAL + R+ +PD +++DI L ++ GL Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGLT 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ +EL E+PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 81 LLGRVR--NELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRS 138 >gi|190573534|ref|YP_001971379.1| putative two-component system, response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011456|emb|CAQ45074.1| putative two-component system, response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 242 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ L + + +GY +G +L + D+I++D+ L G Sbjct: 7 MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++ S PVI +TA A D + G + Y++KP + I+ + Sbjct: 67 LTLCRDLRARS---NTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLR 123 Query: 122 E 122 Sbjct: 124 R 124 >gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 245 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 54/116 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E A+Q PDV+I D+ + + G Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFDVATAVDGEEGFTKAQQMLPDVVISDVMMPRLDGYG 79 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + K++++D L PVI +TA M D + G + YI KP + ++ Sbjct: 80 LLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNV 135 >gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 244 Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D + + + G+ + EA + R D+++ DI + G Sbjct: 6 MPRILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSVDLVVSDIMMPGEDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +T+ ++E IPVI +TA A + + G + Y+ KP + + I+ + Sbjct: 66 LSLTRHLRE---TSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVLR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 230 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED+ L +E +G+ +G L A + D++++D+ L +SG Sbjct: 1 MARILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVMLPGVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++++ V+ +TA A + D + G + Y++KP SL ++ + Sbjct: 61 FEIVERLRRRPGYPR--VLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 232 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 +++V+D + + +E SG N +A + + PDVII DI + E+ Sbjct: 4 SATILLVDDEPSVRESVQAYLEYSGDLTVKVASNATDAWRILEKITPDVIISDIMMPEVD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++++D Q IPVI +TA M D + GC+AY+ KP +K + Sbjct: 64 GYQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGCDAYLPKPFDPEELEAIVKNLL 123 Query: 121 GE 122 Sbjct: 124 ER 125 >gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50] gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50] Length = 229 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D + + + ++TSGY + NG EALE ++H +++MDI + E+ G Sbjct: 1 MYNILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQIKEHDIHLVLMDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E++ +PVI +TA + D+ + G + YI+KP + + +K + Sbjct: 61 ITAMLKIREET---NLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC 6803] Length = 1209 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N ++ ++E GY NG+EAL++ Q DVI+MD+++ E+ GL Sbjct: 937 RILLVEDNNINQRVALLMLEKLGYRPDIAGNGLEALQVLHQASYDVILMDVEMPEMDGLS 996 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK I++D E P +IAVTA+AM+GD E G YI+KPI + ++ +++ Sbjct: 997 ATKAIRQDFPADEQPWIIAVTAYAMQGDRETCLAAGMNDYITKPIRENDLLDALQRI 1053 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 K+++IV+DN+L+ + + L+ G A T +G EA RQ D+ I+D+Q++E+ G Sbjct: 776 KRLLIVDDNQLSCEGLKQLVTAWGLQAQATTSGWEAFSWLRQGECFDLAIIDLQMEEVDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVT 83 L++ + ++ + +P++ +T Sbjct: 836 LQLAEALRTLPTGESLPLVILT 857 >gi|332975405|gb|EGK12298.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)] Length = 230 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+EDN + E GY NG L L +++ DVI++D+ L ++G Sbjct: 1 MHKILIIEDNPDIVANIYAFFEPKGYELDNAHNGPSGLSLLAENQYDVILLDVMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++E ++ PV+ +TA D+ G Y+ KP SL +K + Sbjct: 61 TELCRTLREKLHIK-TPVLMLTARDTISDKVAGFDSGANDYLVKPFSLVELEVRVKALLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + +E SGY RNG++ L + D++I+D+ L + G + Sbjct: 2 RILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ S PV+ +TA D R + G + Y+ KP S + + ++ + Sbjct: 62 LVQVVRQRS--AHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRR 118 >gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208] Length = 222 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ +KL + G+ L+ +G+EA ++ + + ++D+ + + G E+ Sbjct: 1 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGFEL 60 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ +IPVI +TA D+ R + G + Y++KP + I+ + + Sbjct: 61 CQKIRA--SFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 117 >gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +L ++ +E G+ +G + L LAR + I++D+ L +SG + Sbjct: 2 RILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E P++ +TA + DE G + Y++KP S + + ++ + Sbjct: 62 VCSRLREAGVW--TPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRR 118 >gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 226 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+ G+ NG++A+ ++ D++++D+QL SG Sbjct: 1 MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRQLRQRS---SVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+DN+ + +E S + + +NG EALE + K ++I+DI + E+ Sbjct: 1 MNEKILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K I ++ P+I ++A + D+ G + Y++KP + + + + Sbjct: 61 GIEVLKTI---GNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|298383908|ref|ZP_06993469.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298263512|gb|EFI06375.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1385 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVED++ + L Y L NG E ++ A + PD+II D+ + G Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKEMPDLIICDVMMPVKDGF 1188 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++KE+ E IP I +TA D + G + Y+ KP + I + I Sbjct: 1189 ECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLI 1246 >gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRSRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1] gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 223 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE ++ PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|218438991|ref|YP_002377320.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] gi|218171719|gb|ACK70452.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424] Length = 589 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED +L +L+ + Y ++ NG + +ELA PD+I+ DI + +G Sbjct: 1 MAKILVIEDELSIRELINELLTLAEYEVIEAENGSQGIELALTTLPDLILCDIMMPYKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q++ E + IP I +TA K D G + Y++KP S ++ I + Sbjct: 61 YEVLQQLQSYPETESIPFIFLTAKGTKVDFREGMSLGADDYLAKPFSEDDLLQAINTRL 119 >gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] Length = 224 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + + + E ++ +G AL+ A PD++++DI + + Sbjct: 1 MNEKLLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALKQA-ACHPDLVLLDINMPGMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++I+ P++ +TA D+ + + G + YI KP + + ++ Sbjct: 60 GLTVCEKIRSHI---SCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|251794279|ref|YP_003009010.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247541905|gb|ACS98923.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED+ + ++ +D + + G LE+ + + D+I++D+ L + G Sbjct: 1 MKRILIIEDDPVIAEVQKDYLLAHSFEVDIAERGDSGLEMELRGEYDLILLDLMLPSMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+E +P++ V+A + D+ R G + YI KP L + +K ++ Sbjct: 61 YEVCRRIRE---ASNVPILIVSAKKEEIDKIRGFGLGADDYILKPFGLGELVARVKAHLS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1245 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 74/117 (63%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N ++ +L++++GY NG AL++ + + ++MDIQ+ + GL Sbjct: 1123 RILLVEDNFINQQVATELLKSAGYEVDVADNGQIALDMIADNDYEAVLMDIQMPVMDGLT 1182 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+++++ E+PVIA+TA AM GD E+ G A+I+KPI L+ +T+ +I Sbjct: 1183 ATRELRKHYNQSELPVIAMTAHAMSGDREKSLDAGMNAHITKPIVLNELFDTLSYWI 1239 Score = 97.5 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++V+DN ++++ +++ + +G EA+ + D++++D + E+ G+ Sbjct: 980 KALVVDDNPTALQIYSTIMQDFKFDVDTAASGSEAIYKLGKSSVDLLLLDWMMPEMDGIA 1039 Query: 64 ITKQI-K--EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++ + D L P +I +TA+A + +E K A + KP S + I Sbjct: 1040 VIEELDRMVADGRLDSRPIIIMMTAYAAEPLKEDADKSNIYAMLQKPFKASALFDEI 1096 >gi|254254582|ref|ZP_04947899.1| Response regulator [Burkholderia dolosa AUO158] gi|124899227|gb|EAY71070.1| Response regulator [Burkholderia dolosa AUO158] Length = 246 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E + PD+I++D+ L GL Sbjct: 6 HVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLDDGAPDLIVLDLMLPGEDGLA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ + + +PV+ +TA + D + G + Y++KP ++ + I+ + A Sbjct: 66 LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124 >gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 224 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 923 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 75/117 (64%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N ++ ++E +G NG EA+ + ++ D+++MDIQ+ E+ G E Sbjct: 666 RLLLVEDNPINQQVAEQILEPTGIEISSAPNGAEAVRMVQEAGYDIVLMDIQMPEMDGYE 725 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ D +++E+P+IA+TA AM+GD+E+ G + YI KPI + + I+ ++ Sbjct: 726 ATTIIRNDLKMKELPIIAMTAHAMRGDKEKCIASGMDDYIPKPIDKELMISIIRNHL 782 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD---VIIMDIQLQEI 59 K V++V+DN + ++ G+ + EA+++ K D ++I+D++L + Sbjct: 522 KPVLVVDDNFAVRSVLVRYLKQFGFQPTSVASAEEAIKIIEDRKDDQFKLLIIDLKLPGM 581 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +G E + +I++ +E+P++ +TA + + + ISKP+ + +I Sbjct: 582 NGDEASIEIRKTYSKEELPILMITATELNSALSKAQNAQINRMISKPLKQATLFNSI 638 >gi|218247529|ref|YP_002372900.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|257061135|ref|YP_003139023.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|218168007|gb|ACK66744.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|256591301|gb|ACV02188.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 395 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K +++V+D N++L ++ GY + NG AL Q PDVI++DI + Sbjct: 5 MTKDKGNLLVVDDTPDNLRLLSAMLSEQGYKVRKALNGQIALNTVSQVPPDVILLDINMA 64 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++G E+ K +K D E Q+IPVI ++A D+ + + G YI+KP + I+ Sbjct: 65 GMNGYEVCKILKSDQETQDIPVIFISALDDVLDKVKAFEVGGVDYITKPFQCEEVIARIE 124 Query: 118 KYI 120 + Sbjct: 125 NQL 127 >gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] Length = 228 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+++ED++ L + T G+ + NG + L LAR D++++DI L +I+ Sbjct: 1 MQNRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ +Q++ +PVI +TA + D + G + YISKP + + + + Sbjct: 61 GLDVLRQLR---VSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|83647884|ref|YP_436319.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83635927|gb|ABC31894.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 540 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN N+K+ + ++ GY L +G +AL + R+ PD+I++D+ + + G E+ Sbjct: 18 ILLVDDNPANLKILYETLDGRGYKLLVADSGEKALSIVRKSHPDLILLDVMMPGMDGFEV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K+D +I ++A + G YISKP + + ++ ++ Sbjct: 78 CRTLKQDPATASSSIIFLSALDDTDSKVMGFDAGGVDYISKPFQVKEVIARVETHL 133 >gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + ++ GY T NG ELA + D++I+D L G+E Sbjct: 2 KILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKPGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + ++ PV+ +TA D G + Y+ KP L + ++ + + Sbjct: 62 ICQALRSQGNT--TPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRRS 119 >gi|94264861|ref|ZP_01288636.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454682|gb|EAT04947.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 391 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 +V++V+D N++L +++ G+ G EAL + R PD++++D+ + E+ G Sbjct: 11 RVLVVDDQPPNIQLLAEVL-ADGHQVFIATGGAEALAICRAPQPPDLVLLDVVMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D IPVI VTA +E G YISKP S +I ++ + Sbjct: 70 EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQL 127 >gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 212 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L +D +E GY + NG+E LE R PD+II D+ + E+ G Sbjct: 5 KRLLLIDDDPNLILLAKDYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ +S IPVI ++A D R G + Y+ KP + ++ + Sbjct: 65 TFVETIRSNSATDWIPVIFLSARGQTADRVRGLTTGADVYMVKPFEPEELVAQVESSL 122 >gi|59714208|ref|YP_206983.1| two-component hybrid sensor histidine kinase [Vibrio fischeri ES114] gi|59482456|gb|AAW88095.1| two-component hybrid sensor histidine kinase [Vibrio fischeri ES114] Length = 766 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN N + ++ + +GY +NG EA+ A + D+I MDI + E+ G+ Sbjct: 501 ILVVEDNHANQIVIKNTLNYAGYSIDIAQNGKEAITKAINTQYDLIFMDISMPEMDGMTA 560 Query: 65 TKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ S+ Q +P+IA+TA A+ GD+ER + G Y+SKP + S +E + KY+ Sbjct: 561 TKKIRSLSDTHQNMPIIALTAHALSGDKERFIEAGMTDYLSKPFNRSDLLECLAKYL 617 >gi|86357266|ref|YP_469158.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|116251495|ref|YP_767333.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190891315|ref|YP_001977857.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|209548892|ref|YP_002280809.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|218460522|ref|ZP_03500613.1| response regulator receiver protein [Rhizobium etli Kim 5] gi|218663505|ref|ZP_03519435.1| response regulator receiver protein [Rhizobium etli IE4771] gi|218673591|ref|ZP_03523260.1| response regulator receiver protein [Rhizobium etli GR56] gi|241204116|ref|YP_002975212.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|4732057|gb|AAD28577.1|AF121341_1 putative response regulator CelR1 [Rhizobium leguminosarum] gi|86281368|gb|ABC90431.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|115256143|emb|CAK07224.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|190696594|gb|ACE90679.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|209534648|gb|ACI54583.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240858006|gb|ACS55673.1| response regulator receiver protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|327194837|gb|EGE61671.1| two-component response regulator protein [Rhizobium etli CNPAF512] Length = 123 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 95/123 (77%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+VMIVEDNELNMKLFRDLIE SGY +QTRNGMEAL+LAR+H+PD+I+MDIQL E+S Sbjct: 1 MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1194 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60 +K++I++D+ N+ L+E+ L NG + +++ + + PD+ ++MD+ + E+ Sbjct: 1074 RKILIIDDDLRNIFAITSLLESYQMQVLFAENGRDGIDILQAN-PDINAVLMDVMMPEMD 1132 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E T+ I++ + + +P+IA+TA AM GD E+ + G YI+KP+ + ++ ++ Sbjct: 1133 GYETTRSIRQQKQFRTLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 1192 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I++D++ ++ D+ G+ A+ + N + L LA+Q++P+ I +DI + ++ G + Sbjct: 809 LIIDDDDKFARILLDMARQQGFKAIVSLNSKQGLALAQQYQPNAITLDIYMPDMDGWTLL 868 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIF---METIKKYIG 121 ++K D + + IPV ++ D E R + G ++ KP+S I + IK +I Sbjct: 869 DRLKHDPQTRHIPVHILS----VDDREQRALQLGAITFLQKPVSPEILNHTLTEIKSFID 924 Query: 122 E 122 Sbjct: 925 R 925 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED+ + + +LI ++ G AL++ R D I++D+ L ++SGL Sbjct: 928 KRLLVIEDDPVQAQSIIELIGNGDVQSIAVNTGAAALDILRSQHFDCIVLDLGLPDMSGL 987 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ +QIK++ L ++P+I T + EE + E+ I K + S ++ Sbjct: 988 QLLEQIKQEPSLLKLPIIVYTGKEISRQEETQLRRLAESIIIKNVRSPERLLD 1040 >gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola CRIS 18C-A] gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Prevotella denticola CRIS 18C-A] Length = 896 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R + Y + +G LELAR+ PD+++ DI + + GLE Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARRIMPDLVVSDIMMPVMDGLEF 713 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K+D + IPVI +TA ++ + G +AYISKP SL + + I I Sbjct: 714 CRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLI 769 >gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [uncultured actinobacterium HF0770_13M05] Length = 224 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 62/116 (53%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED+ L R +E +G+ ++ + A+++ + + D++I+D L + GL +TK Sbjct: 2 VEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTKT 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++ ++ Q+IP+I +TA + + D + G + YI+KP S + + + + Sbjct: 62 LRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRS 117 >gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 224 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L + G+ ++ R+G EAL + D++++DI + + G Sbjct: 1 MPTILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIMMPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++ ++P++ +TA ++ + + G + Y++KP ++ + Sbjct: 61 WTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|294809168|ref|ZP_06767884.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294443562|gb|EFG12313.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1301 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1208 >gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA] gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ + R L+E GYI + +G + L+ D++I+DI + IS Sbjct: 3 MDNHILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKV-SDDIDLVILDIMMPGIS 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ ++I++ + +PV+ +TA + + D+ G + Y+ KP S + + +K + Sbjct: 62 GIKTCEEIRK---ISHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVKALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] Length = 233 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 62/117 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED++ KL +E +GY + G +AL+ + D+I++DI L I G E+ Sbjct: 7 LVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIMLPGIDGFEVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ L+++P+I +TA + D+ + G + Y+ KP S I+ + Sbjct: 67 RRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123 >gi|304406283|ref|ZP_07387940.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] gi|304344867|gb|EFM10704.1| response regulator receiver protein [Paenibacillus curdlanolyticus YK9] Length = 121 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 72/120 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VEDNELN + + G+ L +G E ++LA QH+PD+I+MD+ L + G Sbjct: 1 MHTILLVEDNELNRDMLTRRLNRKGFQILTAEDGKEGVDLAIQHRPDLILMDLSLPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ +K + ++IPVIA+TA AM GDE + GC+ + +KP+ L + I +G Sbjct: 61 WEATRLLKSTDDTKQIPVIALTAHAMAGDEAEAYRAGCDDFDTKPVDLERLLNKINAALG 120 >gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii SDF] gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii] Length = 236 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISGLE 63 ++IV+D ++ ++ +G+ LQ + +A ++ +P +I++D L +SG++ Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++K D L EIPV+ +TA + + + G + Y++KP S + IK + A Sbjct: 66 LCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125 >gi|119513685|ref|ZP_01632685.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119461659|gb|EAW42696.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 366 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ N+ L + +++ GYI NG +AL + D++++D+ + + G E Sbjct: 10 KILVVDDSPDNVFLIKTILQGEGYIISTAENGADALVELEKSPCDLVLLDLMMPGMDGYE 69 Query: 64 ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ D++ Q IP++ +TA + + G + +I KP++L + ++ + Sbjct: 70 VTRRIRGDTKFQPYIPILLITAHDAP-NVAKGLDLGADDFIRKPVTLDELLARVRSLLR 127 >gi|120610742|ref|YP_970420.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1] gi|120589206|gb|ABM32646.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax citrulli AAC00-1] Length = 395 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 V++V+D N+ L L+ Y+ +G +AL +A+ P D+I++DI + + G Sbjct: 38 ATVLVVDDTPDNLALMATLLRDH-YLVKVASHGEKALRIAQSDPPPDLILLDIMMPGLDG 96 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K ++IP+I +TA + DE R G YI+KPIS I + + ++ Sbjct: 97 YEVCRQLKAHPASRDIPIIFLTARSTPEDERRGLAAGAVDYITKPISPPILLARVHTHL 155 >gi|29348581|ref|NP_812084.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340486|gb|AAO78278.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1310 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + +E S + +G+EAL+L + H PD+I+ D+ + ++G E Sbjct: 1058 TILVVDDNPDMTDFLKKTLEESFKRVIIAADGVEALQLIKSHIPDIIVSDVMMPRMNGYE 1117 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IKED + IP+I +TA K K G +AY++KP + + ME I + Sbjct: 1118 LCINIKEDITISHIPIILLTARDDKQSLISGYKNGADAYLTKPFEVEMLMEIISNRL 1174 >gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] Length = 232 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D +L R + L+ +G+ AL R PD++++D+ + + G + Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E+S +PVI +TA D + + G + YI+KP ++ + + Sbjct: 68 LQRIREESA---VPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS 123 >gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1202 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ +N ++ R ++ G +G E + L +H+ D+++MDIQ+ + G E Sbjct: 935 VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGVRLFARHRYDLVLMDIQMPGMDGYET 994 Query: 65 TKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I++ P++A+TA AM+ D +R + Y+SKPISL + K++ Sbjct: 995 TDAIRQMERSERWPRTPIVALTANAMEQDRDRCLAADMDDYLSKPISLDRLKAAMSKWL 1053 Score = 96.0 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 12/127 (9%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 + ++V+DN N L + G L+ +G +ALE D+ I+D+ + Sbjct: 787 RALVVDDNATNRNLLGRYLSNWGVTHLECASGKQALEKIADAAKFGLSFDLAILDLLMPG 846 Query: 59 ISGLEITKQIKEDSELQEIP----VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + GL + ++I + + ++I V+ +A A E + + G A +SKPI + Sbjct: 847 MDGLALAERITQMVQDKQIKPLRMVLLTSAHAR---REELEQAGVVAALSKPIRQAQLRA 903 Query: 115 TIKKYIG 121 + + + Sbjct: 904 LLGQVMR 910 >gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 232 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED+ ++ +D +E GY + G+E L + D++++D L E+ Sbjct: 1 MKEKLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+ +S ++P++ ++A D+ + G + YI+KP SL + ++ Sbjct: 61 GLTVCQNIRWES---DVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IVED+ L R + GY +G E + + D +++D+ L I GL Sbjct: 15 RRVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLMLPGIDGL 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K+ + + P+I +A + + + G + Y++KP S+ + ++ + Sbjct: 75 EICKRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRR 132 Query: 123 A 123 + Sbjct: 133 S 133 >gi|114707397|ref|ZP_01440294.1| Response regulator receiver [Fulvimarina pelagi HTCC2506] gi|114537278|gb|EAU40405.1| Response regulator receiver [Fulvimarina pelagi HTCC2506] Length = 123 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 87/122 (71%), Positives = 107/122 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLFRDLIE GY ++T +G+ A++LAR+H+PD+I+MDIQL EIS Sbjct: 1 MAKTVMIVEDNELNMKLFRDLIEAYGYETIRTSSGLNAVDLARKHRPDLILMDIQLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+Q+K D ELQ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETI+ ++ Sbjct: 61 GLDVTRQLKADPELQRIPVIAVTAFAMKGDEERIREGGCEAYISKPISVPKFIETIRSFL 120 Query: 121 GE 122 GE Sbjct: 121 GE 122 >gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 916 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V++V+D+ N+ +E L NG EA E+ Q D+++MDI + E+ G Sbjct: 794 RVLVVDDDMRNVFAITAALEEQEIEVLFAGNGREAQEILMQTPGIDLVLMDIMMPEMDGY 853 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I++ E ++IP+IA+TA AMKGD ++ + G YISKP+ ++ + ++ ++ Sbjct: 854 EAMQSIRKMPEYEKIPIIALTAKAMKGDRDKCLQAGASDYISKPLDINQLLSLMRVWL 911 >gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] Length = 234 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D + + L + G++ + +G AL LAR KPD++++D+ L + G+ Sbjct: 4 ATILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +Q+ D+ + V+ +TA A + D+ G + Y++KP S + +K + Sbjct: 64 EVCRQLHRDT---SVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120 >gi|297568710|ref|YP_003690054.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfurivibrio alkaliphilus AHT2] gi|296924625|gb|ADH85435.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfurivibrio alkaliphilus AHT2] Length = 530 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N ++ + GY+ ++ NG +AL + D++++DI + E+ G E+ Sbjct: 171 ILVVDDITANREVLSRRLRRLGYLVMEAENGRQALAMLETGAFDLVLLDILMPELDGYEV 230 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK + ++ +PV+ ++A R + G + Y++KP + + + + Sbjct: 231 LRRIKANELIRHVPVLMISAVGDINSVVRCLEAGADDYLAKPFNSVLLRARVNASL 286 >gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379] gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379] Length = 223 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED ++ ++ + Y +G EAL+ D+II DI + + G E Sbjct: 2 KILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+++E PVI +TA D+ G + YI KP I+ + Sbjct: 62 FIKRLRESKN--NTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRR 118 >gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED + + G+ +G E LELA D+I++D+ L ++ Sbjct: 1 MNGRILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ + P+I +TA D G + YI KP ++ + I+ Sbjct: 61 GMEVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|187919315|ref|YP_001888346.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717753|gb|ACD18976.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 246 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E +G NG + Q PD+I++D+ + GL Sbjct: 6 HVLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +PV+ +TA + D + G + Y+ KP ++ + I+ + A Sbjct: 66 LCRELRA-GKFRAVPVLMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124 >gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB [Myxococcus xanthus DK 1622] gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB [Myxococcus xanthus DK 1622] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+I++D +L + SG + G EAL AR+ PD++++D+ L ++SG Sbjct: 1 MPHVLIIDDERDLAELIDFNLRGSGLTTHVSHTGEEALVAAREQNPDLVLLDLMLPDMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ +Q++ + + + ++ +TA + D R + G + Y+ KP S+ + +K + Sbjct: 61 IDVCRQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAILR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 222 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D+ ++ R + GY + +G+ LA D++++D+ L E+ G Sbjct: 1 MAKILIVDDDPAIREILRAYLSHEGYELSEAADGVS--ALALAPAADLVVLDLMLPEMDG 58 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + ++ D E+P++ +TA + + R + G + Y++KP S + ++ + Sbjct: 59 LEVARHLRRD--FPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|291532478|emb|CBL05591.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 194 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + + +E G+ NG+ A E Q D++++DI L ++ G Sbjct: 1 MSKILIVEDEHRIARFLQMELEHEGFSTASESNGLRAYERIIQEDYDLVLLDIMLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I + +++ L +IP+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LTICQNVRK---LSDIPIIMLTAKDEINDKVTGLDIGADDYITKPFAIQELLARIRATLR 117 Query: 122 E 122 + Sbjct: 118 K 118 >gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator motifs [Rhizobium leguminosarum bv. viciae 3841] Length = 2099 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++E G L G EA+++ +++MDI + + G Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ + + +P++A+TA AMKGD E+ + G Y++KP++ + ++ ++ Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ ++ DL +G+ L G +AL LA+ ++P I +DI L ++ G + Sbjct: 1714 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALAQDYRPAAISLDIFLPDMLGWTVL 1773 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 Q+K++ + + IPV ++ + D + G A++SKP + + +K Y Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1827 Score = 94.8 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VEDNE L+ +G EAL RQ+ D +++D+ L ++SG Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQNSADCVVLDLSLPDMSGF 1892 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ +Q+++D+E+ E+PV+ T + +E+ + + K + S ++ Sbjct: 1893 DVLEQMRDDAEIGEVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945 >gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 226 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E + + +E + + T NG +A+ ++ D+II+D+ L EI G + Sbjct: 2 RILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGFQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +QI+ E+PVI +TA GD K G + Y++KP L + I I Sbjct: 62 ICEQIRLTDM--EVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKR 118 >gi|320162523|ref|YP_004175748.1| putative response regulator [Anaerolinea thermophila UNI-1] gi|319996377|dbj|BAJ65148.1| putative response regulator [Anaerolinea thermophila UNI-1] Length = 325 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +++ RD++ +GY + NG EAL+ RQ PD+I+ DI + + G + Sbjct: 9 RILLVEDDGSLLEVVRDILSDAGYHVITAANGEEALQAFRQAHPDLILSDIMMPVMDGFQ 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ +P I ++A + D R+ G + Y+ KP S + ++ + Sbjct: 69 LLEAVRQMEAGMLVPFIFLSARTERYDTSNARRLGADDYLFKPFSADELLTAVEARLRR 127 >gi|291569601|dbj|BAI91873.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 379 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 57/116 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ + Y NG AL PD++++DI++ E+ G ++ Sbjct: 11 ILIVDDTPDNLRVLSATLGDRDYDVQCAINGQLALMAVANQPPDLVLLDIKMPEMDGYQV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + +IPVI ++A D+ + G YI+KP + + ++ + Sbjct: 71 CEALKSQQKTADIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQL 126 >gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQE 58 M K K+++ +D KL RD + Y ++ NG +AL++ + +II+D+ + + Sbjct: 1 MSKNKILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + K+I+E IPV+ +TA + D + G + YI+KP S I M + Sbjct: 61 VDGFAVLKEIRE---TSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNA 117 Query: 119 YIGEA 123 + + Sbjct: 118 VLRRS 122 >gi|284035957|ref|YP_003385887.1| response regulator receiver protein [Spirosoma linguale DSM 74] gi|283815250|gb|ADB37088.1| response regulator receiver protein [Spirosoma linguale DSM 74] Length = 247 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++ED + +L+ SGY +G++ + LA++ PD+I+ DI + ++ Sbjct: 1 MSIRILVIEDVTQIRENIAELLTMSGYEVQMAADGVKGITLAQKWSPDLILSDIMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K ++ L +P + +TA + D G + Y++KP S ++ I+ + Sbjct: 61 GHQVLKSVRASPTLAHVPFVFLTAKSDMLDLRYSMNLGADDYLTKPFRSSELLKAIESRL 120 Query: 121 GE 122 Sbjct: 121 AR 122 >gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 223 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|148558726|ref|YP_001257449.1| putative transcriptional regulatory protein OmpR [Brucella ovis ATCC 25840] gi|148370011|gb|ABQ62883.1| putative transcriptional regulatory protein OmpR [Brucella ovis ATCC 25840] Length = 238 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L + ++ G NG E L++ + D++I+D+ L SG+ Sbjct: 5 AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ +P+I +TA A D+ + G + YI+KP + I+ + Sbjct: 65 EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121 >gi|126652243|ref|ZP_01724422.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905] gi|126590975|gb|EAZ85087.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905] Length = 234 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ L + + T Y ++G AL+ A KPDV I+D+ L +I Sbjct: 1 MNKRILVVEDDVAIANLIKMTLATQQYEFDIAQDGNRALQKAITMKPDVYILDLGLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +I+ + P+I V+A + D+ G + Y++KP S+ + I+ + Sbjct: 61 GVELITKIRS---WTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVAL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++I +D+ L + ++ Y + +NG+EAL+ + K DV+I+D+ + + G Sbjct: 19 RRILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVMMPYVDGF 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+E S ++P+I +TA D + G + YI+KP + + + + Sbjct: 79 EACQRIRERS---DVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRR 135 >gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5] Length = 234 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + ++ + + G+ +G++AL L + H D++++DI + + G Sbjct: 13 MANILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIMMPHLDG 72 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +E S L P+I +TA + + D+ + + G + Y++KP S + + + Sbjct: 73 FSVCKMAREMSSL---PIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLR 129 Query: 122 EA 123 + Sbjct: 130 RS 131 >gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D +L GY ++ +GM+A+E+ + D+I+MDI + E+ G Sbjct: 1 MPRILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++ ++ PVI ++A + D + G + Y+ KP S M ++ + Sbjct: 61 FSAVREIRK---TKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ + ++ E +G+ +G+ LE+ RQ +PD+II+D+ L I G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + +++ IP++ +TA + + G Y+ KP S+ + ++ + Sbjct: 61 FSVCRAVAKETA---IPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR 117 >gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 234 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +M+V+D + +L ++ GY LQ NG E LEL ++++ +I++DI + +I Sbjct: 1 MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + +++E + E+P+I ++A D+ G + Y++KP + + IK Sbjct: 61 DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|117926657|ref|YP_867274.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117610413|gb|ABK45868.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 241 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+E + D + G+ +G DVI+MD+ L GL Sbjct: 6 RILIVEDDEPTRTMVADYLRGHGFEVRTLASGETMNSTLAAWPADVIVMDLMLPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K++ D + +IP+I +TA + D + G + Y+SKP S + ++ + A Sbjct: 66 LCKRLSVDKQTADIPIIMLTARGEETDRIVGLEMGADDYLSKPFSTRELLARLRSVLRRA 125 >gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254410456|ref|ZP_05024235.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182662|gb|EDX77647.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 2020 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED +N K+ R +++ GY A NG EALE R+ V+ MD+Q+ E+ GLE Sbjct: 1756 ILLVEDVAVNQKVARQMLQRLGYRADVANNGQEALESLRRKSYQVVFMDVQMPEMDGLEA 1815 Query: 65 TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ + P +IA+TA AM+GD E+ + G YISKPI ++ + Y Sbjct: 1816 TRRIRAEWSSACQPWIIAMTAHAMQGDREQCLQVGMNDYISKPIRPEALVQALTTY 1871 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 11/126 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 K++++V+DN N ++ ++ G +G +AL LA D+ ++D Q+ E+ G Sbjct: 1609 KRLLVVDDNATNRQIITLQAQSWGMEVTTAASGEQALNWLADSEPFDLAVLDWQMPEMDG 1668 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA-----MKGDEERIRKGGCEAYISKPISLSIFMETI 116 L + QI+ +++P++ +++ D A+++KPI S Sbjct: 1669 LTLALQIQALPNNEQLPLVMLSSVGRQTPYQPDDMPN-----FAAFLTKPIKQSQLYNIF 1723 Query: 117 KKYIGE 122 +G Sbjct: 1724 VTILGR 1729 >gi|153869707|ref|ZP_01999246.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp. PS] gi|152073825|gb|EDN70752.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp. PS] Length = 1183 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYI--ALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59 KKV+IV+D+ N +E G NG EAL + +H D+++MDI + E+ Sbjct: 1061 KKVLIVDDDIRNTFALMTYLEGEGMEMEIFIGENGKEALTMLDEHPDIDIVLMDIMMPEM 1120 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E + I++ + Q++P+IA+TA AMKGD+ + + G Y+SKP+ + ++ + Sbjct: 1121 DGYEAIRAIRKQTRFQKLPIIALTAKAMKGDKTKCIEAGANDYLSKPVDTEKLISLMRVW 1180 Query: 120 I 120 + Sbjct: 1181 L 1181 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ +L + G+ L +G L+LA+Q+KP II+D+ L ++ G + Sbjct: 795 ILLIEDDYKFSRLLMEFARDRGFKCLIAGDGKTGLQLAQQYKPHAIILDVGLPQMDGWTV 854 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKYIG 121 +++K++ E + IPV ++A D +K G Y+ KP+ + E I++++ Sbjct: 855 MEKLKDNPETRHIPVHFLSASESNLD---AKKMGAIGYLLKPVGMGEINEAFKNIEQFLS 911 Query: 122 E 122 + Sbjct: 912 K 912 Score = 46.3 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV DN+ + LI + D II+D+ +++ +G Sbjct: 915 KNLLIVVDNQERQQEIEALIGNEEVQLKVAKTQDNVRSYLHTGAFDCIIIDVDVEQGTGT 974 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS-KPI-SLSIFME 114 + +Q++ + + EIPVI T + EE++ + C+A+++ K + S ++ Sbjct: 975 QFLEQLQVEETVSEIPVILYTGRDLTPQEEKVLQT-CQAHLTVKAVNSPERLLD 1027 >gi|330836392|ref|YP_004411033.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748295|gb|AEC01651.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 251 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED +L ++ GY LQ +G +ALE + P+++++D+ L E+SGLE+ Sbjct: 18 VLIVEDETDIQELISYHLKQEGYSVLQALDGRQALEQIKVGTPNLVLLDLMLPELSGLEV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I+ + +PV+ +A + D + G + YI+KP S + + +K + Sbjct: 78 LKTIRYSWGMTALPVLIASARTEESDIIMGLEIGADDYITKPFSPKVLIARVKAILRR 135 >gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 246 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ +G A+ AR+ +PD I++D+ L ++ G E Sbjct: 21 RVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGFE 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ E+PV+ +TA D G + Y++KP SL + ++ + A Sbjct: 81 VLRRVRA--GTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRA 138 >gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 246 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E GY + + + + +++++D+ L GL Sbjct: 13 RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLMLPGEDGLS 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++E IP+I +TA D G + Y+ KP + M IK + Sbjct: 73 ICRRLRE--ATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRR 129 >gi|293368763|ref|ZP_06615367.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292636068|gb|EFF54556.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1343 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1150 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1151 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1207 >gi|253572680|ref|ZP_04850081.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251837812|gb|EES65902.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1321 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + L +G+EAL+L + H PD+I+ D+ + ++G E+ Sbjct: 1063 ILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1122 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKED + IPVI +TA K + K G +AY++KP + + ME I+ + Sbjct: 1123 CKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRL 1178 >gi|153010998|ref|YP_001372212.1| response regulator PleD [Ochrobactrum anthropi ATCC 49188] gi|151562886|gb|ABS16383.1| response regulator receiver modulated diguanylate cyclase [Ochrobactrum anthropi ATCC 49188] Length = 461 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+EL + DV+++DI + E+ Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVITAYSGPEAIELCLGGQIDVVLLDILMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K+D IPV+ VT+ D+ R + G + ++SKP+S + +K Sbjct: 61 GFEVCRRLKDDPRTSNIPVVMVTSLDGVDDKIRGLEAGADDFLSKPVSDLQLLSRVKSLA 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 80.6 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IV+++EL R ++ + Y + AL A D I++ L Sbjct: 160 ARILIVDEDELAAARLRLILGET-YRVDVASDANTALIRAIDTDYDSIVVSANFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P+I V R + G Y+ +P+ ++ I Sbjct: 219 RLCSQLRTIERTRLVPIILVVREDEGALVVRALELGVNDYLMRPLEKLELFARLRTQIKR 278 >gi|29347045|ref|NP_810548.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338943|gb|AAO76742.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1321 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + L +G+EAL+L + H PD+I+ D+ + ++G E+ Sbjct: 1063 ILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1122 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKED + IPVI +TA K + K G +AY++KP + + ME I+ + Sbjct: 1123 CKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRL 1178 >gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++ED + ++ G+ +G E LELA + D+I++D+ L ++ Sbjct: 1 MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ + P+I +TA D G + YI KP ++ + I+ Sbjct: 61 GMEVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241] gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + G Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 FQVCKTIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 247 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D++ L + ++ A G E L+ R+ + ++++D+ + + G Sbjct: 18 MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+++ +P++ T+ + R + G + Y++KP + + I I Sbjct: 78 FETLEEIRKE---YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 134 Query: 122 E 122 Sbjct: 135 R 135 >gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24] Length = 1792 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1671 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1730 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1731 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1790 Query: 122 E 122 E Sbjct: 1791 E 1791 >gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 2099 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++E G L G EA+++ +++MDI + + G Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ + + +P++A+TA AMKGD E+ + G Y++KP++ + ++ ++ Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 6/117 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ ++ DL +G+ L G +AL LA+ ++P I +DI L ++ G + Sbjct: 1714 LVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALAQDYRPAAISLDIFLPDMLGWTVL 1773 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 Q+K++ + + IPV ++ + D + G A++SKP + + +K Y Sbjct: 1774 SQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAY 1827 Score = 98.7 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VEDNE L+ +G EAL+ RQ+ D +++D+ L ++SG Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALDALRQNAADCVVLDLSLPDMSGF 1892 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ +QI++D+E++E+PV+ T + +E+ + + K + S ++ Sbjct: 1893 DVLEQIRDDAEIREVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945 >gi|225568924|ref|ZP_03777949.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM 15053] gi|225162423|gb|EEG75042.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM 15053] Length = 217 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED L ++ + +GY+ +G++A ++ Q + D++++DI L EI+G Sbjct: 1 MNKILIVEDEVPISNLIKESLSDAGYLCFCAFDGIQAADMVEQKRYDLVLLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ IPVI +TA + D+ + K G E YI+KP ++ + ++ + Sbjct: 61 YELLEYIRPLG----IPVIFLTARSDVRDKVKGLKSGAEDYITKPFEIAELLARVETVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016] gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 242 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L ++ G+ ++ NG +A + ++ I+D+ L +I Sbjct: 11 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E+ PVI +TA + D+ G + YI+KP + +K + Sbjct: 71 GFTLCQRIRENHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 127 Query: 121 GE 122 Sbjct: 128 RR 129 >gi|209964835|ref|YP_002297750.1| cell division response regulator protein DivK [Rhodospirillum centenum SW] gi|209958301|gb|ACI98937.1| cell division response regulator protein DivK [Rhodospirillum centenum SW] Length = 143 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 79/117 (67%), Positives = 105/117 (89%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNELNMKLF DL+E GY LQT++GMEAL LARQH+PD+I+MDIQL E+SGLE+ Sbjct: 27 VLVVEDNELNMKLFHDLLEAHGYATLQTKDGMEALRLARQHRPDLILMDIQLPEVSGLEV 86 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 TK +KED +L+ IPV+AVTAFAMKGDEE+IR+GGCE YI+KPIS++ F++T+++++G Sbjct: 87 TKWLKEDDDLRGIPVVAVTAFAMKGDEEKIREGGCEDYIAKPISVARFIQTVQRFLG 143 >gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 235 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D + L +++ GY LQ +G+EA+++ D++I+D+ + ++G+E Sbjct: 6 ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVMMPNLNGIET 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E +E+P+I ++A + D+ G + Y+SKP + + +K + Sbjct: 66 CLKIREM---KEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRR 120 >gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium vanbaalenii PYR-1] gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii PYR-1] Length = 1385 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 58/117 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V++ +DN + L+ + GY +G+EALE R PD+++ D+ + + G Sbjct: 626 SARVLVADDNADMREYLTRLLRSDGYRVDAVADGLEALEAIRAGAPDIVVSDVMMPRLDG 685 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 L + +++ D PV+ ++A A + + + G + Y+ KP + + + ++ Sbjct: 686 LGLVAELRADRRTAATPVLLLSARAGQQESISGLRAGADDYLVKPFAAAELLARVRT 742 >gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT] gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+I +D E ++L +E G+ NG+EAL++ ++ D+ I+DI + +I G Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E+ ++PVI ++A + D+ G + YI+KP + + +K + Sbjct: 61 YHLVRKIREN---YDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E K ++ GY A +G L+LA ++ DVI++D+ L E++G Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E +++ P+I +TA D G + Y+ KP ++ + I+ + Sbjct: 61 LEVARRLRE---VKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|260172959|ref|ZP_05759371.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315921239|ref|ZP_07917479.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313695114|gb|EFS31949.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1372 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + + NG E + A PD+++ DI + + G+ + Sbjct: 1114 LIVEDNEEIQKYIVESFTDS-FEVITANNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 KQ+K+D IP+I +TA D+E + G ++Y++KP S S+ I + Sbjct: 1173 KQLKDDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227 >gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 224 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + IK Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|170744709|ref|YP_001773364.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium sp. 4-46] gi|168198983|gb|ACA20930.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium sp. 4-46] Length = 457 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D N+KL + + + NG +A+ + Q D++++D+ + + Sbjct: 1 MSARVLIVDDLFPNLKLLETKLSLEYFDVISAMNGPDAIAICEQGLCDIVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K +PV+ VTA D R G + +++KPI + + ++ + Sbjct: 61 GFEVCRRLKTTPTTAHLPVVMVTALDQPSDRLRGLDAGADDFLTKPIDDTALLARVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 7/113 (6%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I +D + + + S + + ALE A + DV ++ + GL Sbjct: 156 AHLLIADDRRASAERMAAALSQS-HCVEVVADPHRALETATEGNFDVALVSLDFDGFDGL 214 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIF 112 + Q++ + + V+ + A GD R G Y+ +PI + Sbjct: 215 RLCSQLRSLDRTRGMQVVML---ADAGDRARIMRGLDLGVHDYLVRPIDRNEL 264 >gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR, regulation of Pi uptake (OmpR family) [Frankia alni ACN14a] Length = 226 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E ++E G+ +G AL + D++++D+ L +SG Sbjct: 1 MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ S +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRTLRTRS---SVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKMNEVKVDMVILDIMMPNMDGFDV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ EIP++ +TA + + G + Y+ KP + +K + Sbjct: 94 CFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 >gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D + + ++T+GY + NGMEA+++ + +++MD+ + ++ G Sbjct: 1 MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGMEAVDMVNSNDIQLVLMDVMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E S +PVI +TA + D+ + G + Y++KP + + +K + Sbjct: 61 ITAMAKIRESS---NVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|239833977|ref|ZP_04682305.1| response regulator receiver protein [Ochrobactrum intermedium LMG 3301] gi|239822040|gb|EEQ93609.1| response regulator receiver protein [Ochrobactrum intermedium LMG 3301] Length = 123 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 93/123 (75%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLFRDLIE SGY ++TRNG+EAL+LAR+H+PD+I+MDIQL E+S Sbjct: 1 MPKSVMIVEDNELNMKLFRDLIEASGYETIRTRNGLEALDLAREHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKDDDELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYM 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes] Length = 233 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D + L + IE +G+ + +G ELA KPD+I++D+ L E+ G+E+T Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++D +P++ +TA + D+ + G + Y++KP S + IK + Sbjct: 62 KKLRQDKV--NVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116 >gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 254 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + + P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ +L RD ++ +GY +G L+ A D++I+D+ L ++ G Sbjct: 1 MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K++++ E IP+I ++A + D+ R G + Y++KP S + M I+ ++ Sbjct: 61 FEIIKEVRKKLE---IPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 524 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 59/116 (50%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+DN N++ ++ GY + +G ALE R H PD+I +DI++ ++ G + Sbjct: 9 LIVDDNIDNLRSLAAILRLEGYKVRKAISGQVALETVRSHPPDLIFLDIKMPQMDGYTVC 68 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +K+D+ IP+I ++A D+ + G YI+KP + ++ + Sbjct: 69 SILKQDTTTGSIPIIFLSALNETADKLKAFAVGGVDYITKPFQAPEVVARVENQLR 124 >gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759] gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D + + ++T+GY + NG EA+++ +++MD+ + ++ G Sbjct: 1 MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGKEAVDMVNAKDIQLVLMDVMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E+S +PVI +TA + D+ + G + Y++KP + + +K + Sbjct: 61 ITAMAKIRENS---NVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|194365077|ref|YP_002027687.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347881|gb|ACF51004.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 242 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ L + + +GY +G +L + D+I++D+ L G Sbjct: 7 MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++ S PVI +TA A D + G + Y++KP + I+ + Sbjct: 67 LTLCRDLRARS---NTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLR 123 Query: 122 E 122 Sbjct: 124 R 124 >gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 240 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D+ L + +E G R+G E L + + D++++D+ + G Sbjct: 5 STHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ S L P+I +TA + D + G + Y++KP + + IK + Sbjct: 65 LTLCRELRAKSSL---PIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|91789740|ref|YP_550692.1| multi-sensor signal transduction histidine kinase [Polaromonas sp. JS666] gi|91698965|gb|ABE45794.1| multi-sensor signal transduction histidine kinase [Polaromonas sp. JS666] Length = 1003 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN L+ Y +G EAL +Q KPD+++ D+ + + GL Sbjct: 642 ARVLVADDNRDLRTFLSSLLAPH-YDVQVVADGREALAAIQQRKPDLVLSDVMMPNLDGL 700 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ED E + +PVI ++A A + G + Y++KP + + ++ ++ Sbjct: 701 GLVRALREDPETRTLPVILLSARAGQEASLEGLSAGADDYLAKPFTSQELLARVRTHL 758 >gi|332141805|ref|YP_004427543.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551827|gb|AEA98545.1| GGDEF domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 1351 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 7/124 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEI 59 +V++VEDN +N + ++E G NG EAL +Q +++MD Q+ E+ Sbjct: 1227 RVLLVEDNAINQLVATTILEGEGLTVDVANNGKEALAFLQQPQQAKPYSLVVMDCQMPEM 1286 Query: 60 SGLEITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G E TK I+ + IP++A+TA AM+ D+++ + G +++KPI + T+ Sbjct: 1287 DGFETTKHIRSGAAGAHYQSIPIVAITANAMQSDKDKCLQSGMNDFLTKPIDQEKVILTL 1346 Query: 117 KKYI 120 +K++ Sbjct: 1347 QKWL 1350 Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 5/119 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEIS 60 +IV+ N N ++ + + G + AL + ++I+D ++ ++ Sbjct: 1075 LIVDSNVSNREVLKRQLNVWGVETSVADSSKGALAHCKASLKSSSPITLVIIDNKMPDMC 1134 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + + E+ +I ++ +T + R G + KP++ + K Sbjct: 1135 GKDFAMALFEEPRFADIRIVVMTELQDIESAQHFRTRGIASIFPKPLTTENLRHILAKV 1193 >gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 223 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++VED R + +G+ L+ EA E Q D++++D L + Sbjct: 1 MMPKLLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQLPQA--DLVVLDWMLPDEP 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++++ D + +PV+ +TA A +GD G + Y++KP S + I+ + Sbjct: 59 GVRLLERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPELLARIQALL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator, hybrid ('one co [Salinibacter ruber M8] gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator, hybrid ('one co [Salinibacter ruber M8] Length = 1392 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++VEDN R+ + + +G E + PD+++ D+ + ++G Sbjct: 1142 ATVLVVEDNAGMRAYLREQLSGR-WTVRTAADGEEGWAAVQDEAPDLVLSDVMMPTVNGT 1200 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +QIK L+ PV+ +TA A E K G + Y++KP + I ++ Sbjct: 1201 ELCEQIKSAEALRHTPVLLLTARAGTDAEVEGLKTGADDYVTKPFDAEELRQRIANHL 1258 >gi|282859444|ref|ZP_06268549.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] gi|282587672|gb|EFB92872.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] Length = 230 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + ++ + +E GYI +G EAL + K +++++D+ ++EISG Sbjct: 7 KILVVDDEKDLCEILKFNLEAEGYIVDTANSGEEALTM-DISKYNLLMLDVMMEEISGFA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K++K+D E ++IP+I +TA + D K G + YISKP S+ + IK + + Sbjct: 66 LAKKLKDDIETKDIPIIFLTARTTENDIITGLKLGADDYISKPFSIREVILRIKVVLRRS 125 >gi|254695542|ref|ZP_05157370.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 3 str. Tulya] gi|261215933|ref|ZP_05930214.1| two-component system response regulator [Brucella abortus bv. 3 str. Tulya] gi|260917540|gb|EEX84401.1| two-component system response regulator [Brucella abortus bv. 3 str. Tulya] Length = 238 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K ++IV+D++ L + ++ G NG E L++ + D++I+D+ L Sbjct: 1 MKEDTHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SG+EI + ++ +P+I +TA A D+ + G + YI+KP + I+ Sbjct: 61 KSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRA 117 Query: 119 YIGE 122 + Sbjct: 118 VLRR 121 >gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] Length = 237 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D K+ + + G+ +G A+ R+ +P +I++D+ L GLE Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGLE 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + V+ ++A + D+ G + Y+ KP + +K + Sbjct: 73 VCRRIR---TFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128 >gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 232 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++++ED ++ +G+ L+ G AL++ +H DV ++D+ L + Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLPGMD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 63 GFQVCKAIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K + IV+D+ ++ ++ GY+ + EA+ L +++ PD+ ++DI L + Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E ++I+ E P+I V+A + D+ + G + Y++KP S + + + Sbjct: 61 NGYEFCRRIRA---GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRA 117 Query: 120 IGE 122 + Sbjct: 118 LQR 120 >gi|242280723|ref|YP_002992852.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] gi|242123617|gb|ACS81313.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] Length = 335 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 1/120 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+KK++ V+D N+++ R ++ Y + NG AL+ A +H PD++++DI + +IS Sbjct: 1 MMKKILCVDDEPNNLQVLRQIL-KEHYQLIFAPNGTRALDAAAKHMPDMVLLDIMMPDIS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D ++I +I VTA + DE G YI KP+S ++ + ++ ++ Sbjct: 60 GYEVCEKLKADPRTKDITIIFVTAMSEVKDEAYGFDVGAVDYIQKPVSGAVVLRRVQTHL 119 >gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 241 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED+ + GY L +G L LAR D+II+D+ L ++G Sbjct: 17 RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGF 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ +E + +PVI ++A + D+ + G E YI+KP SL+ + +K + Sbjct: 77 ELLRILR--NERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRR 134 >gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L] gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L] gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 233 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKIREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|73668584|ref|YP_304599.1| response regulator receiver [Methanosarcina barkeri str. Fusaro] gi|72395746|gb|AAZ70019.1| response regulator receiver [Methanosarcina barkeri str. Fusaro] Length = 125 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 57/122 (46%), Positives = 84/122 (68%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+KK++IVEDN +NM+L DL+E G+ + +G++ALE + K D+I++D+QL ++ Sbjct: 1 MMKKILIVEDNPMNMELILDLLEFYGHNITKAEDGIKALESLAETKFDIILLDMQLPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +IK++ +IPVIAVTA AMKG EE + GC Y+SKPI + F I KY+ Sbjct: 61 GLEVLDRIKKNPATADIPVIAVTAHAMKGSEEHFIEMGCVDYVSKPIDIHKFRALIDKYL 120 Query: 121 GE 122 GE Sbjct: 121 GE 122 >gi|29349644|ref|NP_813147.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341554|gb|AAO79341.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1385 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVED++ + L Y L NG E ++ A + PD+II D+ + G Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKEMPDLIICDVMMPVKDGF 1188 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++KE+ E IP I +TA D + G + Y+ KP + I + I Sbjct: 1189 ECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLI 1246 >gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2] Length = 1792 Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G L NG EA+E R ++++MD+ + ++ G Sbjct: 1672 RTVLLVDDDARNIFALSGVLERRGMSVLTASNGGEAIESLRARPEIEIVLMDVMMPDMDG 1731 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++++ + + +P++A+TA AMKGD E+ G Y++KP+ + ++ ++ Sbjct: 1732 YETMQRVRTEPAFRRLPIVALTARAMKGDREKCIDAGASDYLAKPVDREQLLAVLRMWLH 1791 Query: 122 E 122 Sbjct: 1792 R 1792 Score = 54.7 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Query: 41 LARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE 100 LA ++P I++++ L + G + Q+K+ + IPV A D G Sbjct: 1443 LADLYRPAAILLNLGLADPPGWNVLAQLKQSIATRHIPVA---ATGAIEDRHYALSRGAF 1499 Query: 101 AYISKPISLSIFMETIKKY 119 ++ P+ + + Sbjct: 1500 DFLEAPVRPGDLKAALMRL 1518 >gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 232 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ +L ++ Y +G EA+ L K D+I++D+ L +I+ Sbjct: 1 MQKRILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + +E S+ +PV+ ++A D+ G + YISKP S+ ++ I Sbjct: 61 GMDLLRHFRESSK---VPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|315649484|ref|ZP_07902569.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315274957|gb|EFU38332.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 1219 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++V+D+ N+ ++E NG EA+EL + + D+++MD+ + E+ G Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQDNPDYDLVLMDMMMPEMDG 1158 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + ++E E +++P+IA+TA AMK D + + G Y+ KPI + ++ ++ Sbjct: 1159 YEAMRLLREMPEFEKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217 Score = 94.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IVED+++ +LI G EAL R+ + D +++D+ L +++G Sbjct: 952 MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRYDCMVLDLMLTDMTG 1011 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ QI++D L ++P+I T + EE + E+ I K + S ++ Sbjct: 1012 FELLDQIRDDENLMDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065 Score = 91.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 3/110 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ D+ G+ AL G LE+A+ ++PD II+DIQL I G + Sbjct: 834 LIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMAKSYRPDAIILDIQLPVIDGWSVM 893 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 ++K + + IPV ++ + + ++ G AY+ KP S Sbjct: 894 GELKSSAVTRHIPVHVIS---VVDEVKQGLMMGAIAYLKKPSSREALENA 940 >gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 234 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 10 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ D +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 70 LEVARRLRADGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|239996813|ref|ZP_04717337.1| two-component system response regulator (hybrid family) protein [Alteromonas macleodii ATCC 27126] Length = 366 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ + ++ Y +G AL++ +Q PD+I++DI + + G E+ Sbjct: 13 ILVVDDEPANIDILLGILGPY-YNVKVAPSGTIALKITQQFTPDLILLDIMMPGMDGFEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + L IPVI VTA DEE+ K G YI+KP+S SI + +K +I Sbjct: 72 CKKLKANEALSHIPVIFVTALTQGEDEEKGFKLGAVDYITKPVSPSITLARVKTHI 127 >gi|237718248|ref|ZP_04548729.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452432|gb|EEO58223.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1324 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1073 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1131 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1132 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1188 >gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 224 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 229 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ + R+ + G+ +G LE A D+I++D+ + +++G Sbjct: 1 MIRILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDYDLILLDVMMPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++++ S IPV+ +TA D + G + Y+SKP + + ++ + Sbjct: 61 IDVLRRLRNHS---NIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|254416266|ref|ZP_05030020.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176948|gb|EDX71958.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 506 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + D + SG+ L ++G AL+ KPD+I++D+ + I G E Sbjct: 19 IVIVDDTPHNLGVLFDFLTDSGFKVLVAQDGQSALQKVEYAKPDLILLDVMMPGIDGFET 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + ++IPV+ ++A + D+ + G +I+KP+ + ++ Sbjct: 79 CRRLKANPATRDIPVLFLSALSDAVDKVKGFNLGAVDFITKPVQQEEVKARVTTHL 134 >gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS] gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS] Length = 1390 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 55/116 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++I +DN L+ +GY +G +ALE R PD+++ D+ + + GL Sbjct: 637 ARILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGL 696 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E+ ++ +S +PV+ ++A A + G + Y+ KP + + + + Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHA 752 >gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 234 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 2/125 (1%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58 M K +++IVED ++ +E +G+ +LQ + EA + H+P +I++D L Sbjct: 1 MSKEQILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SG++ + +K D+ L EIPVI +TA + + + G + Y++KP S + IK Sbjct: 61 KSGIDFCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKA 120 Query: 119 YIGEA 123 + + Sbjct: 121 VLRRS 125 >gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec] Length = 1159 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++E G + NG +E+ + D+++MD+ + E+ G Sbjct: 1025 TVLVVDDDVRNVFAITSILELYGLNVIHAENGRRGIEMLQSDPSIDLVLMDVMMPEMDGY 1084 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I+ + ++P+IAVTA AM D ++ G YI+KP+ + + I+ + Sbjct: 1085 TTMTAIRTMPRIADLPIIAVTAKAMPDDRQKCLDAGATDYITKPVDVDELLACIRTRL 1142 >gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D+ +L + +++ GY +G EA + + + ++D+ + + G Sbjct: 1 MIHILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+ + PVI +TA D+E+ G + Y++KP + IK + Sbjct: 61 YQLCEEIR---RYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 858 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 71/123 (57%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59 KK+++VEDNELN ++ ++++ +G+ +G A+ +Q + D+I+MDIQ+ + Sbjct: 735 KKILLVEDNELNREIAVEILKEAGFEVESAEDGEIAVRKMKQAADGQYDLILMDIQMPNM 794 Query: 60 SGLEITKQIKEDSELQE--IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G E T+QI+ + + IP+ A+TA A + D + K G +I+KP+ + ++ + Sbjct: 795 DGYEATRQIRALPDAAKAGIPIFAMTANAFEEDRQNALKAGMNGHIAKPLDIPHLLQVLA 854 Query: 118 KYI 120 + Sbjct: 855 DVL 857 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58 + ++ +D+ ++ G T +G EA+ + + + V I+D + + Sbjct: 596 RALVADDDTDTCLSVSTMLSKIGMRPEWTISGREAVIRTRYAMEQGDEFSVYIIDWLIPD 655 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+EI +QI++ + P+I +TA+ EE R G A+ KP+ LS ++ Sbjct: 656 MNGIEIVRQIRKVIR-KSCPIIILTAYDWADIEEEARAAGVTAFCEKPLFLSEL----RR 710 Query: 119 YIGE 122 + E Sbjct: 711 VLAE 714 >gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 2028 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 55/117 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN L+ NG +ALE R PD+++ D+ + + G Sbjct: 1657 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1716 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ D + + IP+I ++A A + G + Y+ KP S + ++ ++ Sbjct: 1717 LVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHL 1773 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN L+ + G AL AR + P +II D+ + ++GL Sbjct: 641 ARILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGL 699 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + ++ D+ + IP++ ++A A + + G + Y+ KP S + + + Sbjct: 700 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALL 757 >gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis ZC1] gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis ZC1] Length = 233 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++ ++D + L +E ++ + EAL+ + D++++DI + E++G Sbjct: 1 MKTILCIDDEPRMLDLLTLYLEPL-FLCRAMTSIQEALDFLEEEHVDLVLLDIMMPEMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I++ ++P+I +TA D + G + YI KP + I + Sbjct: 60 WQVCQEIRK---FWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 234 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED++ +L RD +E + + +G E A D+I++D+ L G Sbjct: 1 MKRILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLMLPSADG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ ++ P++ V+A + D+ R G + YI KP S + +K +I Sbjct: 61 FAVCRAIRQK---KDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] Length = 239 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D + + + E GY NG EAL +A + + +I+MD+ + + G Sbjct: 8 MYNILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVMMPVMDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++EDS IPVI +TA + D+ G + Y++KP + + K I Sbjct: 68 IQTVRKLREDSI---IPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|222085607|ref|YP_002544137.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221723055|gb|ACM26211.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 133 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 94/123 (76%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+VMIVEDNELNMKLFRDLIE SGY +QTRNGMEAL+LAR+H+PD+I+MDIQL E+S Sbjct: 11 MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKHRPDLILMDIQLPEVS 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED +L IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ETIK Y+ Sbjct: 71 GLEVTKWLKEDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 130 Query: 121 GEA 123 G+A Sbjct: 131 GDA 133 >gi|313158368|gb|EFR57767.1| putative sensory transduction protein RegX3 [Alistipes sp. HGB5] Length = 226 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++V+D E ++ + +E GY + +AL + + +I++D+ + E+ Sbjct: 1 MTKHKILVVDDEESLCEILQFNLEVEGYEVDTAYSAEQALGM-HPERYSLILLDVMMGEM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ +Q++ E +P+I TA + D G + YI+KP S+ + ++ Sbjct: 60 SGFKMARQLRAQPETAAVPIIFCTAKDTEDDTVAGLNIGADDYIAKPFSVREVLARVRSV 119 Query: 120 IGE 122 + Sbjct: 120 LRR 122 >gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 232 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++IVED + + GY NG+EALE+ D+ I+D+ + ++ Sbjct: 1 MSQSHILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ T +++E PVI ++A + + D+ G + Y++KP + + Sbjct: 61 DGITFTMKLREH---HHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] Length = 223 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + +++ + Y NG AL+ + D +IMDI + + G+ Sbjct: 2 RILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLEEDIYDAVIMDIMMPVMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K +++ IPV+ +TA D+ G Y++KP + I+ + + Sbjct: 62 ALKNLRKCG--SNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIR-VLTRS 118 >gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] Length = 1334 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGLE 63 +IVEDN N ++ R+L+E G NG EA+E+ + DV++MD+Q+ + G Sbjct: 987 LIVEDNLNNQQIARELLEDEGATVTIANNGKEAIEILERTPALFDVVLMDLQMPVMDGFN 1046 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I+E L+E+P+IA+TA AM D + G +I KP L+ ++TI+KY G Sbjct: 1047 ATRYIRESLGLKELPIIAMTANAMASDRDACLAAGMNDHIGKPFDLNNLIQTIRKYSGR 1105 Score = 96.4 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DN L + + E+ + +G +AL+L +Q + + +D Q+ Sbjct: 837 RVLVVDDNPTACDLIKRMGESLKWTVDVATSGDQALQLMKQQRDNGITYGALFIDWQMPG 896 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115 + G + +K ++E P ++ +TA + +R + + Y+ KPI+ S+ +++ Sbjct: 897 LDGWQTSKYVRELMPADNAPMIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 956 Query: 116 I 116 + Sbjct: 957 V 957 >gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ + + G+ +G EAL + +PD+I++D+ L + G Sbjct: 1 MPSLLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ +++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRQIR---RTEQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 234 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L +E G+ + +G++AL K D++I+DI + + G + Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + G + Y+ KP + +K + Sbjct: 73 VCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 >gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019] gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019] Length = 250 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+++ + PD+I+MD+ L +I G + Sbjct: 13 IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ +PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 73 TRRIRQNGVA--VPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 128 >gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 229 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED +L +D +E S + +G + L+L D+II+DI L + G Sbjct: 1 MSRVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+E ++IP++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKQIREK---KDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLE 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 230 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|75675623|ref|YP_318044.1| response regulator receiver [Nitrobacter winogradskyi Nb-255] gi|74420493|gb|ABA04692.1| response regulator receiver [Nitrobacter winogradskyi Nb-255] Length = 121 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 78/121 (64%), Positives = 103/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T NG EAL+L R+ +PD+++MDIQL ++S Sbjct: 1 MAKTVLIVEDNELNMKLFRDLLEAHGYHTSGTSNGFEALDLVRKLRPDLVLMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+ IK+D EL+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET+++++ Sbjct: 61 GLDVTRWIKDDPELRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFV 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|148256094|ref|YP_001240679.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. BTAi1] gi|146408267|gb|ABQ36773.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. BTAi1] Length = 121 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 78/121 (64%), Positives = 104/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T +G+EAL++ R+ +PD+I+MDIQL ++S Sbjct: 1 MGKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSSGVEALDIVRRTRPDLILMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ IK+D +L+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLEVTRWIKDDPDLRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396] gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396] Length = 229 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED + ++ GY + NG E LE+A + D+I++D+ L E+ Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++++ + ++ +TA + D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQQE---KNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|260174235|ref|ZP_05760647.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315922504|ref|ZP_07918744.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696379|gb|EFS33214.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1343 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN K+ + E Y +G E LE A +P +I+ DI + +SGLE Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1150 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + IPV+ +TA + + G + YISKP ++ I + I Sbjct: 1151 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNII 1207 >gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 233 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L + +++ ++++DI + +I G+ Sbjct: 5 TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKIRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 233 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++I +D +L ++ GY + +G AL+ + H D+ I+DI + + Sbjct: 1 MKQVTILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIMMPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T+ I+E +P+I ++A D+ G + Y++KP + + + Sbjct: 61 DGYEVTRLIREQ---HNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|159897134|ref|YP_001543381.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159890173|gb|ABX03253.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 355 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 67/117 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+E N L + + Y + NG +AL+ + H D+I++DI + ++G E Sbjct: 7 RILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHTIDLILLDIMMPVMNGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K++ +L+ IPVI V+A + + + G E Y++KP + ++ I+ + Sbjct: 67 VLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFNTTLLRARIEASL 123 >gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+ G+ NG++A+ ++ D++++D+QL SG Sbjct: 1 MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ S +PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRQLRQRS---SVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 236 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K ++IVED + + + +E Y Q +G E LE A ++ D+I++DI L Sbjct: 1 MKDKVHILIVEDEKNISDILKFNLEKESYDISQRFDGKEGLEFALSNEIDLILLDIMLPS 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G EI KQI++ + P+I +TA + D+ + G + YI+KP S+ + +K Sbjct: 61 MDGFEICKQIRK---TKNTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKA 117 Query: 119 YIGE 122 + Sbjct: 118 NVRR 121 >gi|293605362|ref|ZP_06687745.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] gi|292816234|gb|EFF75332.1| sensor histidine kinase/response regulator [Achromobacter piechaudii ATCC 43553] Length = 1116 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQL 56 + V++VED+ N+ ++E +G RNG EAL+ + D+++MDI + Sbjct: 991 RTVLVVEDDVRNVFALSSILEPTGLRVEIARNGREALDALERAGGEGVPAIDLVLMDIMM 1050 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G + I+ E + +P+IA+TA AMK D+E+ G YI+KP+ + + + Sbjct: 1051 PEMDGYTAMRHIRNRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVERLLSLV 1110 Query: 117 KKYIG 121 + ++ Sbjct: 1111 RVWMR 1115 Score = 102 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++++ED+E + DL G+ L + LELA +P+ I++D+ L + SGL Sbjct: 723 RSILVIEDDERFASILADLAREMGFGCLTAHTAADGLELALHKRPNAIVLDVNLPDFSGL 782 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + Q+K + + IPV V+ + + G Y KP+ +E +++ Sbjct: 783 GVLDQLKRNPHTRHIPVHVVS---VADYAQEAMGRGAVGYALKPVKREELVEALRRL 836 Score = 69.4 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 49/94 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED++ + R L+ + ALEL R D ++MD+ L +ISG Sbjct: 845 RRVLVVEDDDRQRESVRQLLARDDVEIVPAATAAAALELLRDATFDCVVMDLNLPDISGY 904 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 E+ +Q+ E + PVI T A+ DEE+ + Sbjct: 905 ELLEQMAEQESVSFPPVIVYTGRALSRDEEQHLR 938 >gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii SH046] gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii SH046] Length = 254 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + +E G++ + + L ++ +I++D L GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + + P+I +TA D + G + Y+ KP + + + I+ + Sbjct: 82 ICRRLRQSNI--DTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 >gi|225628912|ref|ZP_03786946.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo] gi|260167230|ref|ZP_05754041.1| Probable transcriptional regulator ycf27 [Brucella sp. F5/99] gi|261756634|ref|ZP_06000343.1| response regulator receiver [Brucella sp. F5/99] gi|225616758|gb|EEH13806.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo] gi|261736618|gb|EEY24614.1| response regulator receiver [Brucella sp. F5/99] Length = 238 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L + ++ G NG E L++ + D++I+D+ L SG+ Sbjct: 5 AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLNRTPIDLVILDVMLPGKSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ +P+I +TA A D+ + G + YI+KP + I+ + Sbjct: 65 EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121 >gi|218528959|ref|YP_002419775.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] gi|218521262|gb|ACK81847.1| response regulator receiver protein [Methylobacterium chloromethanicum CM4] Length = 126 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 82/122 (67%), Positives = 106/122 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY L+T NG+EA+ELAR H P++I+MDIQL E+S Sbjct: 1 MKKTVLIVEDNELNMKLFNDLLEAHGYATLKTANGIEAIELARAHHPELILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D +L+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T+++YI Sbjct: 61 GLEVTKWLKDDDDLRNIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRRYI 120 Query: 121 GE 122 G+ Sbjct: 121 GD 122 >gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 243 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ ++ + Y + NG + L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + P+I ++A + + + G + Y++KP S+ + +K + Sbjct: 65 EICRRARAMERY--TPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRR 122 >gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 228 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+M+ +D ++ + GY NG +AL+LAR+ +P V ++D+ + E++G E Sbjct: 8 KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVMMPEMNGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +KE + I VI +TA D + K G + Y+ KP S + + I+ + Sbjct: 68 VCQSLKETED--NIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLR 123 >gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 235 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED E L R + +GY +G +A+ A + D I++D+ L + G E Sbjct: 2 RVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ P++ +TA D G + Y++KP S ++ I Sbjct: 62 VCRRLRAARRWS--PILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRR 118 >gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1195 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +K++I++D+ N+ L+E+ L NG + +EL + + + ++MD+ + E+ G Sbjct: 1075 RKILIIDDDLRNIFAITSLLESYQMQVLFAENGRDGIELLQANSDINAVLMDVMMPEMDG 1134 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I++ + + +P+IA+TA AM GD E+ + G YI+KP+ + ++ ++ Sbjct: 1135 YETTRSIRQQKQFRTLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 1193 Score = 108 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 8/121 (6%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I++D++ ++ D+ G+ A+ + N + L LA+Q++P+ I +DI + ++ G + Sbjct: 810 LIIDDDDKFARILLDMARQQGFKAIVSLNSKQGLALAQQYQPNAITLDIYMPDMDGWTLL 869 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIF---METIKKYIG 121 ++K D + + IPV ++ D E R + G ++ KP+S I + IK +I Sbjct: 870 DRLKHDPQTRHIPVHILS----VDDREQRALQLGAITFLQKPVSPEILNHTLTEIKSFID 925 Query: 122 E 122 Sbjct: 926 R 926 Score = 90.2 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++++ED+ + + +LI ++ G ALE+ R D I++D+ L ++SGL Sbjct: 929 KRLLVIEDDPVQAQSIIELIGNGDVQSMAVNTGAAALEILRSQHFDCIVLDLGLPDMSGL 988 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +QIK++ L ++P+I T + EE + E+ I K + S ++ Sbjct: 989 ELLEQIKQEPNLVKLPIIVYTGKEISRQEETQLRRLAESIIIKNVRSPERLLD 1041 >gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] Length = 230 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 229 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 1 MLKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M + V++VED ++ + +E G+ + NG EA+ L + +PD+I++D L Sbjct: 1 MAQTQPCVLVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAMLLVAEEQPDLIVLDWMLP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 +SG+EI +++K D ++IP+I ++A + + D R + G + Y+ KP S+ M Sbjct: 61 NVSGIEICRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMA 117 >gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 232 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + L +E GY +G +A + D+ ++DI L +I Sbjct: 1 MDTHILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+ D + PVI +TA + D+ G + Y+ KP + +K + Sbjct: 61 GFELLRTIRAD---RTYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656] gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656] gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++ +D + + + + GY + RNG+EAL++ + + +++MDI + + G Sbjct: 1 MYKVLVCDDEKDIVSAISIYLTSDGYEVIPARNGLEALDIVKHNDVHLVLMDIMMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E +I++ + +PVI +TA + D+ G + Y++KP + +K I Sbjct: 61 IEAMVEIRK---ISNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] Length = 281 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED L ++ Y + EALE ++ D+ I+DI L ++S Sbjct: 51 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 110 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +TA + D+ G + YI+KP + +K + Sbjct: 111 GLTICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 167 Query: 121 GE 122 Sbjct: 168 RR 169 >gi|145641399|ref|ZP_01796978.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae R3021] gi|145273942|gb|EDK13809.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.4-21] Length = 164 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED ++ + Y ++ + A+ +++ P +I++D L S Sbjct: 1 MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ + IK+ IP+I +TA + + D G + YI+KP S I + I+ Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|83955851|ref|ZP_00964393.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] gi|83839856|gb|EAP79033.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] Length = 239 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ K +E +G A N +E + D+I++D+ + GL Sbjct: 6 RILVVDDHSEIRKSVTSYLERNGMRASAAGNAVEMDARLAEAHFDLIVLDVMMPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++++ IP++ +TA D GG + Y++KP + + I + Sbjct: 66 ACRRLRKEG---HIPILMLTALGDDEDRIAGLDGGADDYLAKPFNPKELVARINAILRR 121 >gi|328953029|ref|YP_004370363.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] gi|328453353|gb|AEB09182.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] Length = 242 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ + R + T GY ++ G E L A PD+I++D+ L ++ Sbjct: 1 MKPSILLIEDDANIRRFLRLTLVTQGYELIEAETGQEGLAQAFARVPDLILLDLGLPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I KQI+E ++PVI ++A + ++ G + Y++KP + + I+ + Sbjct: 61 GIDIIKQIRE---WSQVPVIVLSARGQEREKIINLDAGADDYLTKPFGMGELLARIRVVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 223 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1075 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 68/114 (59%), Gaps = 1/114 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++ EDN++N L ++E G I +G +A+E ++K D+I+MD+Q+ + GL Sbjct: 824 KKVLLAEDNQMNQFLATTILEEWGVIVEVAEDGKQAIEKFSENKYDLILMDMQMPIMDGL 883 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E T+ I++ +P+IA+TA A+KGD +R + G Y+ KP + E I Sbjct: 884 EATRIIRQQLR-STVPIIALTANAIKGDRQRCIEVGMNDYLPKPFAQKDLQEKI 936 >gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1230 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 75/116 (64%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N ++ +L++++GY NG AL++ + D ++MDIQ+ + GL Sbjct: 1112 ILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLTA 1171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK++++ +E+PVIA+TA AM GD E+ G A+I+KPI L+ +T+ ++I Sbjct: 1172 TKELRKRYTKEELPVIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++V+DN ++++ + + NG EAL D++++D + E+ G+E Sbjct: 968 KTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLEHRPVDLLLLDWMMPEMDGVE 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + K + D L++ P +I +TA+A + +E + A + KP S + I Sbjct: 1028 VIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDIYAMLQKPFKASALFDEI 1084 >gi|117926854|ref|YP_867471.1| response regulator receiver protein [Magnetococcus sp. MC-1] gi|117610610|gb|ABK46065.1| response regulator receiver protein [Magnetococcus sp. MC-1] Length = 564 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 61/113 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +N + L+E G+ NG +EL +PD+++MDI++ ++G E Sbjct: 2 KILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDERPDLVLMDIRMPLMNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++IK S + +P+I +TA + G + +++KP + +I I Sbjct: 62 AARRIKSLSPNRFVPIIFLTAVTDDEGLAKCIDAGGDDFLTKPFNRTILQAKI 114 >gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+E + +E GY +G+ LE R+ D++I+D+ L + G+ Sbjct: 22 RVLLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGHDLLILDVMLPHLDGIG 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E S+ P++ ++A D + G + Y+ KP+ ++ + I+ + A Sbjct: 82 LCRRIRESSQA---PILMMSARGHSLDVVSGLEAGADDYVVKPVDTTVLVARIRSLLRRA 138 >gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides sp. D22] Length = 1353 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE ++++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1298 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE ++++ D+I+ D+ + + G++ Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1107 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1108 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1165 >gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1298 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE ++++ D+I+ D+ + + G++ Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1107 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1108 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1165 >gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1353 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE ++++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|317051227|ref|YP_004112343.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316946311|gb|ADU65787.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1000 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN LN ++ ++ G NG EAL + Q DV++MD+++ + GL Sbjct: 748 RVLLVEDNALNREVASGMLRGMGVEITLVCNGQEALAILDQQDYDVVLMDMRMPVMDGLS 807 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+QI+ + +P+IA+TA AM D E + G +I+KP+S + ++K+ G Sbjct: 808 ATRQIRRNPRWNAMPIIAMTANAMHSDVEACKAAGMNDHIAKPVSRKLLESALRKWTGR 866 >gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 ML---KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M+ ++I +D + L +E Y + NG + L + D+ I+D+ L Sbjct: 1 MMLLATNILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVMLP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G I +QI+E PVI +TA + D+ G + YI+KP + +K Sbjct: 61 DMDGFSICQQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVK 117 Query: 118 KYIGE 122 + Sbjct: 118 AQLRR 122 >gi|218439786|ref|YP_002378115.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7424] gi|218172514|gb|ACK71247.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7424] Length = 308 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ L + +E GY + ++G E + + +P +I++D + E+ G Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYQVITAKDGEECINEFNRCQPHMILLDAVMPEMDGFTC 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E SE +IP++ +TA + ++ G YI+KPI ++ + +K+ + Sbjct: 75 CQRLRELSEGSQIPILMITALDDQDSIDQAFTCGAVDYITKPIHWAVLAQRVKRLL 130 >gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21] gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + +E Y +G E L+LA + D+I++D L + GL Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++E L P++ +TA D G + Y++KP + + + ++ + + Sbjct: 62 VLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRS 119 >gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483] gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483] gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1353 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE ++++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1] gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1156 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 77/121 (63%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++VED + N ++E + NG+EA+E +Q+ D+I+MD + +++G+ Sbjct: 1034 KKVLLVEDVKTNQLFMSIILEGLHFEVATADNGIEAVEAFKQNSYDLILMDEHMPKMNGI 1093 Query: 63 EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TKQI ++ L P+IA+TA A+KGD ER K G + Y++KPI+ +IF++ ++K Sbjct: 1094 EATKQILAIEGENNLPHTPIIALTANAIKGDRERFLKAGMDEYVTKPINQNIFVKVLRKV 1153 Query: 120 I 120 + Sbjct: 1154 L 1154 >gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus sp. 29_1] gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus sp. 29_1] Length = 233 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +++VED+ L ++ Y L NG A+ A H PD+I++D+ L + Sbjct: 1 MNKTSTILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHNPDIILLDLGLPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G+EI K+++ +P+I ++A + D+ G + Y++KP S+ + ++ Sbjct: 61 IDGIEIIKKVRS---WSNMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRV 117 Query: 119 YIGE 122 + Sbjct: 118 TLRR 121 >gi|323343418|ref|ZP_08083645.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269] gi|323095237|gb|EFZ37811.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269] Length = 1348 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDN + L R++++ Y NG+EALE R+ PD++I D+ + + G Sbjct: 1090 KRILVVEDNNEMVVLLRNILQDH-YTIDAAANGIEALEWIRESGPDLVISDVMMPRMDGF 1148 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + IK+D L IPVI +TA + D+ + K G + Y++KP + + + I Sbjct: 1149 ALCGAIKKDVMLCHIPVILLTAKTLDKDKIKGYKEGADMYLNKPFNPELLLSMIGNVFHR 1208 Query: 123 A 123 + Sbjct: 1209 S 1209 >gi|261253471|ref|ZP_05946044.1| response regulator [Vibrio orientalis CIP 102891] gi|260936862|gb|EEX92851.1| response regulator [Vibrio orientalis CIP 102891] Length = 240 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEI 59 M K+++V+D++ +L + + Y +G + PD+I++D+ L Sbjct: 1 MSAKILVVDDDQEICELLEEYLTKQSYQVSTVNDGEQMKAEIELNGYPDLILLDVMLPGD 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +Q + S +P+I +TA + D+ + G + YI+KP + IK Sbjct: 61 DGFTLCQQTRRQS---SVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAV 117 Query: 120 IGEA 123 + A Sbjct: 118 LRRA 121 >gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 234 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 74 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 >gi|254524497|ref|ZP_05136552.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14] gi|219722088|gb|EED40613.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14] Length = 236 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ L + + +GY +G +L + D+I++D+ L G Sbjct: 1 MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++ S PVI +TA A D + G + Y++KP + I+ + Sbjct: 61 LTLCRDLRARS---NTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 792 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+EL + + L+ Y +G A EL + D+I+ D+ L + G+ Sbjct: 2 RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGVG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ S+ +IP++ +T D G + Y+ KP ++ + Sbjct: 62 LCQQLR--SQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRR 118 Score = 116 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++MIV+D+ ++ L + G + + E PD++++D+++ EI G+ Sbjct: 488 ARIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGI 547 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + ++ D + +++P+I +TA ++ G + +ISKPI + I + Sbjct: 548 DLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607 >gi|197119640|ref|YP_002140067.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197089000|gb|ACH40271.1| response receiver sensor histidine kinase [Geobacter bemidjiensis Bem] Length = 383 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K+ VMIV+D N+++ + + Y +G +ALEL R KPD+I++DI + + Sbjct: 1 MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADKPDLILLDIMMPGM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +K D ++IP+I VTA + +E + + G Y++KPIS I +K + Sbjct: 60 DGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKNH 119 Query: 120 I 120 + Sbjct: 120 L 120 >gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] Length = 234 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED L ++ Y + EALE ++ D+ I+DI L ++S Sbjct: 4 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVS 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I+E P+I +TA + D+ G + YI+KP + +K + Sbjct: 64 GLTICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 240 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + IV+D +L + GY +G E L + PD+II+D+ + G Sbjct: 4 SQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + I+ S PV+ ++A D + G + Y+ KP + + +K + Sbjct: 64 LSLCRHIRSRS---NTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|307592131|ref|YP_003899722.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306985776|gb|ADN17656.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 209 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D +++L +++ GY + NG AL A+ PD+I++DI + +++G Sbjct: 13 AKILVVDDTIDSLRLMANMLTDQGYNVRKVLNGQMALTAAQSAPPDLILLDINMPQLNGY 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K + EIPVI ++A D+ + G YI+KP + ++ + Sbjct: 73 EVCQQLKNNPITAEIPVIFISALDEVLDKVKAFSVGAVDYITKPFYFEELVTRVETQL 130 >gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 232 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ +E G+ + +G+EALE+ RQ + + I+DI + + G Sbjct: 1 MENILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILRQARIQLAIVDIMMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K+++ IPVI ++A + D+ G + YI+KP + + +K + Sbjct: 61 IRLVKEVR---RFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1062 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ ED+ L+ + ++E SGY +G EAL+ ++ D+I+MD+Q+ ++G+ Sbjct: 939 RRILLAEDDPLSSLTCKRMLEKSGYSVTAANDGQEALQRLTENDFDLILMDVQMPVMNGI 998 Query: 63 EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TK I+ + L IP++A+TA+AM GD+E G YI+KP+ E I++ Sbjct: 999 EATKAIRGANNLGAKSSIPIVAMTAYAMTGDKESFLAAGMNGYIAKPVDKGALFEAIERV 1058 Query: 120 I 120 + Sbjct: 1059 L 1059 >gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 224 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L + G+ ++ +G EAL + D++++DI + + G Sbjct: 1 MTTILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIMMPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++ EIP++ +TA ++ + + G + Y++KP +K + Sbjct: 61 WTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 220 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I ED+ + + + +GY +NG+EA ++ D+IIMDI + + G Sbjct: 1 MEKILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKEAFDLIIMDIMMPSMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T+ I+ P++ +TA + + DE + G + YI KP S + ++ ++ + Sbjct: 61 YTLTELIRS---TSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 233 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQE 58 + ++++V+D + GY G A EL ++ +++++D L E Sbjct: 1 MARILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SGL + +++++ P++ +TA D G + Y+ KP L + ++ Sbjct: 61 LSGLSLCQRVRQVDCT--TPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRA 118 Query: 119 YIGE 122 + Sbjct: 119 LLRR 122 >gi|77362188|ref|YP_341762.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis TAC125] gi|76877099|emb|CAI89316.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas haloplanktis TAC125] Length = 927 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVEDN +N + ++ +G +G+EAL + D+I+MD Q+ + G Sbjct: 806 KRILIVEDNPINQIVITKMMIATGCEIKTANDGLEALHCLESYPADLILMDCQMPNMDGY 865 Query: 63 EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T++I++ + + + ++A+TA A D+E+ G +I+KPI+ + + I Sbjct: 866 QCTQKIRQMPNDCKNVLILAITANAFAEDKEKCLSAGMNDFIAKPINKNELYQCINNL 923 >gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Query: 1 MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M K +++V+D +L + +G+ +G EA+E+ + P++I+MD+ L Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I G +T++I+++ ++PV+ +TA D+ G + Y++KP SL + I Sbjct: 61 PDIDGFTVTRRIRQNGI--KVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARI 118 Query: 117 KKYIGE 122 + + Sbjct: 119 RAILRR 124 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D L + +G+ + +G AL Q +PD++++D+ L ++ G Sbjct: 14 ARLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E P++ +TA D+ + G + Y++KP L + I+ + Sbjct: 74 TVARRLRERDVT--TPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131 >gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 885 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 69/118 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN N KL L+ G+ + NG EA+ + + KP +I MD+++ + G E Sbjct: 668 RILVVDDNWTNRKLVVKLLNPLGFHVREAENGQEAIAIWEEWKPHLIFMDMRMPVMDGYE 727 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ IK + Q +IA+TA A++ ++ + GC+ ++ KP + ++TI K++G Sbjct: 728 ATQLIKRHLKGQATVIIALTASALQQEKSIVLSAGCDDFVRKPFRVDQLLQTIVKHLG 785 >gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ + + + Y+ +G EA EL + D+I++D+ L +I G+ Sbjct: 2 KILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLPKIDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + S + P++ +TA D G + Y+ KP +L ++ + Sbjct: 62 LCRKFR--SRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRR 118 >gi|92114536|ref|YP_574464.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797626|gb|ABE59765.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 237 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V +++D+ +L + G+ + NG L R PD++I+DI + GL Sbjct: 6 ATVAVIDDDAEIRELLHAYLSQHGFRVVLAENGDAVPSLLRDESPDLLILDIMMPGEDGL 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ S +P+I +TA + + D + G + Y++KP + + IK + Sbjct: 66 SLCRDLRRHS---NVPIIMLTASSDETDRILGLELGADDYLAKPFNPRELLARIKAVLRR 122 >gi|315922180|ref|ZP_07918420.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313696055|gb|EFS32890.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1322 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDNE + + Y + NG EA +A + + D+I+ D+ + + G Sbjct: 1074 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1132 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++KE+ + I +I +TA +E + G + Y++KP ++ I I+ + Sbjct: 1133 ELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLL 1190 >gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D + L ++ GY + + +AL + + D+ ++DI + +I+ Sbjct: 1 MQTRILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIMMPKIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI K I+E PVI +TA D+ + G + YI+KP + + +K + Sbjct: 61 GFEICKIIREKYTF---PVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284051516|ref|ZP_06381726.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 270 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N L L++ G+ + NG EA+ L +Q P +I MD+ + I G E Sbjct: 53 RILVVEDNPVNRLLLTTLLQDVGFEVREAENGQEAIALWQQWHPHLIFMDMHMPVIDGFE 112 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ IK+ V+A+TA A + GC+ +ISKP +ET+ KY+G Sbjct: 113 ATQYIKQSEVDAIPVVVAITASAFTEQRQNCIDAGCDDFISKPFRREQVLETLTKYLG 170 >gi|260173915|ref|ZP_05760327.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1308 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDNE + + Y + NG EA +A + + D+I+ D+ + + G Sbjct: 1060 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1118 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++KE+ + I +I +TA +E + G + Y++KP ++ I I+ + Sbjct: 1119 ELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLL 1176 >gi|322421476|ref|YP_004200699.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] gi|320127863|gb|ADW15423.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter sp. M18] Length = 534 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ V+D +N+ L ++ G+ + NG+EAL ++ + D++++D+ + E+ G E Sbjct: 7 RILCVDDEPMNLTLLEAMLLLRGFEVVTASNGLEALGEIQRGRVDIVLLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK + + IPV+ +TA+A + + + G E +ISKP + + I + Sbjct: 67 VCRRIKAEERYRNIPVVMITAYAARENRIMGIEAGAEDFISKPFDSAEVLARIGMLL 123 >gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus ATCC 19977] gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium abscessus] Length = 224 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D ++ R + GY + +G AL A + +P+V+I+D+ L ++ G Sbjct: 1 MTRVLVVDDEPQILRAMRINLSARGYEVVTASSGAGALRAAAETQPEVVILDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ ++PVI ++A D+ G + Y++KP + F+ ++ + Sbjct: 61 TEVLAGLR---GWTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|153870359|ref|ZP_01999776.1| two-component response regulator [Beggiatoa sp. PS] gi|152073174|gb|EDN70223.1| two-component response regulator [Beggiatoa sp. PS] Length = 301 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 69/116 (59%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D+ N+++ ++++ +GY ++G AL ++ PD+I++DI + I G+E+ Sbjct: 10 VLIVDDHPQNLQVLGNMLKANGYKPAAAQDGTIALAFVQKTHPDLILLDIMMPGIDGIEV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 KQ+K+ ++IPVI +TA + D+ + K G YI+KP + IK +I Sbjct: 70 CKQLKQQEHTRKIPVIFITALSDTRDKLKAFKAGGVDYITKPFVQEEVIARIKVHI 125 >gi|149376372|ref|ZP_01894135.1| Signal transduction histidine kinase [Marinobacter algicola DG893] gi|149359386|gb|EDM47847.1| Signal transduction histidine kinase [Marinobacter algicola DG893] Length = 756 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLE 63 ++VEDN++N + +++ G+ NG +ALE + + K D+++MD Q+ + G E Sbjct: 633 LLVEDNQVNQVVASSMLKKLGHTVTLAENGKQALEALQQGEGKFDIVLMDCQMPVMDGYE 692 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+E+ E + +PVIAVTA M+GD + + G YI+KP + + I ++ Sbjct: 693 ATRTIRENPEWRNLPVIAVTANVMQGDRDDCIESGMNDYITKPYNRADLKSIIDRW 748 >gi|85059514|ref|YP_455216.1| putative two-component regulator protein [Sodalis glossinidius str. 'morsitans'] gi|84780034|dbj|BAE74811.1| putative two-component regulator protein [Sodalis glossinidius str. 'morsitans'] Length = 168 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D + R + SGY+ NG E + +A ++ D+I++D+ + E++G E Sbjct: 2 KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGVFMAEEYYYDLILLDVMMPELNGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K L + PVI +TA + D + + G + Y+ KP S + + I+ + Sbjct: 62 V---MKTLDSLLDTPVIFLTAKSTVDDRIKGLELGADDYLVKPFSFAELLARIRTALRR 117 >gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 1358 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++ ED+ N + L+E GY +G A+ R D+++MD+Q+ ++ G Sbjct: 1235 RRVLLAEDHPANALVATTLLEDYGYDCEVVPDGGTAIARWRTSAFDLVMMDVQMPDMDGY 1294 Query: 63 EITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+QI+ P++A+TA A+KGD E + G + YI+KP + + ++ Sbjct: 1295 EATRQIRRIEVQETRPRTPILAMTAHALKGDRETCLQAGMDDYIAKPFDAAELEQKLRAL 1354 Query: 120 I 120 + Sbjct: 1355 L 1355 Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 56/124 (45%), Gaps = 6/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN L+ + + +G +A + R P++++ D+ + ++ G Sbjct: 610 RVVLADDNADMRDYIHRLLNDD-FDVVAVTDGEQAWQAIRDQLPELVLTDVMMPKLDGFG 668 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----K 118 + ++++ D + +PVI ++A A + G + Y+ KP + + ++ Sbjct: 669 LLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNARELLAKVRSQLQIA 728 Query: 119 YIGE 122 ++ Sbjct: 729 HLRR 732 >gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus subtilis subsp. spizizenii str. W23] Length = 230 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED+ ++ + G+ + +G E + L +Q D+I++DI L +++G Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E S IPV+ ++A D+ G + YI+KP S+ +K I Sbjct: 61 MDFLKIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|316933148|ref|YP_004108130.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315600862|gb|ADU43397.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 240 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ L + ++ +G E H+ D++++D+ L GL + Sbjct: 8 ILVVEDDRETRALIAKYLRSNNCNVATAADGREMERWIADHRVDLVVLDVMLPGEDGLSL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +S+L P+I +TA D + G + Y+ KP + + I+ + Sbjct: 68 CRKIRANSQL---PIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122 >gi|261250889|ref|ZP_05943463.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis CIP 102891] gi|260937762|gb|EEX93750.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis CIP 102891] Length = 376 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N L L++ + L NG +AL +A PD+I++DI + E+ G E+ Sbjct: 8 VLVVDDNAENRVLLSGLLKPY-FKVLVAVNGEQALTIASAKLPDIILLDIMMPEMDGYEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K + + IPVI +TA DE+R + G YI KPIS I + I ++ Sbjct: 67 CLRLKSNPITESIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLTRINTHL 122 >gi|322417618|ref|YP_004196841.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320124005|gb|ADW11565.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 455 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+DN++N++L ++ + +G+ AL+ A PD+I++D + + G Sbjct: 12 MPSILIVDDNQINLQLLCGMLAGMSWRVRPVASGIMALKAAMAKLPDLILLDAMMPGMDG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K+ + IP++ +TA + + + G + ++SKP+ S K + Sbjct: 72 FEVCRHLKQTPATEHIPIVMITALTDQESRMKALRCGADDFLSKPVDRSELQVRTKNLLR 131 >gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 228 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + ++ GY NG E L+ A D I++D+ L E++G Sbjct: 1 MSRILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ + P+I +TA D G + Y+ KP ++ + ++ + Sbjct: 61 LEVCRRLRQS---KSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 227 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I ED+ + D++ GY L NG AL +Q +PD II+DI + E+ G Sbjct: 2 KILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIMMPELDGYS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I++ E + PVI ++A + D+ + G + YI+KP + IK Sbjct: 62 VCKEIRKHDE--QTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARR 118 >gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51] gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D++ ++ R + GY + NG++ALE+ + ++IMDI + ++ G+ Sbjct: 3 ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLVIMDIMMPQMDGIRA 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E+ + IPVI ++A + D+ G + YI+KP + + +K + Sbjct: 63 LMKIREE---RNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRR 117 >gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550] Length = 224 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|17989136|ref|NP_541769.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23500221|ref|NP_699661.1| transcriptional regulatory protein OmpR [Brucella suis 1330] gi|62317658|ref|YP_223511.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1 str. 9-941] gi|83269641|ref|YP_418932.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|163844637|ref|YP_001622292.1| hypothetical protein BSUIS_B0474 [Brucella suis ATCC 23445] gi|189022907|ref|YP_001932648.1| Response regulator receiver [Brucella abortus S19] gi|225686276|ref|YP_002734248.1| putative transcriptional regulator ycf27 [Brucella melitensis ATCC 23457] gi|237817205|ref|ZP_04596197.1| Probable transcriptional regulator ycf27 [Brucella abortus str. 2308 A] gi|254691154|ref|ZP_05154408.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 6 str. 870] gi|254698937|ref|ZP_05160765.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 2 str. 86/8/59] gi|254699728|ref|ZP_05161556.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 5 str. 513] gi|254702863|ref|ZP_05164691.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 3 str. 686] gi|254706012|ref|ZP_05167840.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis M163/99/10] gi|254711685|ref|ZP_05173496.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis B2/94] gi|254732384|ref|ZP_05190962.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 4 str. 292] gi|256029680|ref|ZP_05443294.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis M292/94/1] gi|256043373|ref|ZP_05446306.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 1 str. Rev.1] gi|256111617|ref|ZP_05452612.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 3 str. Ether] gi|256157833|ref|ZP_05455751.1| Probable transcriptional regulator ycf27 [Brucella ceti M490/95/1] gi|256253205|ref|ZP_05458741.1| Probable transcriptional regulator ycf27 [Brucella ceti B1/94] gi|256256340|ref|ZP_05461876.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 9 str. C68] gi|256262586|ref|ZP_05465118.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260544890|ref|ZP_05820711.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564579|ref|ZP_05835064.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260756755|ref|ZP_05869103.1| two-component system response regulator [Brucella abortus bv. 6 str. 870] gi|260760185|ref|ZP_05872533.1| two-component system response regulator [Brucella abortus bv. 4 str. 292] gi|260763423|ref|ZP_05875755.1| two-component system response regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882570|ref|ZP_05894184.1| two-component system response regulator [Brucella abortus bv. 9 str. C68] gi|261220313|ref|ZP_05934594.1| two-component system response regulator [Brucella ceti B1/94] gi|261313453|ref|ZP_05952650.1| two-component system response regulator [Brucella pinnipedialis M163/99/10] gi|261319310|ref|ZP_05958507.1| two-component system response regulator [Brucella pinnipedialis B2/94] gi|261750193|ref|ZP_05993902.1| two-component system response regulator [Brucella suis bv. 5 str. 513] gi|261753466|ref|ZP_05997175.1| two-component system response regulator [Brucella suis bv. 3 str. 686] gi|265986690|ref|ZP_06099247.1| two-component system response regulator [Brucella pinnipedialis M292/94/1] gi|265989794|ref|ZP_06102351.1| two-component system response regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993097|ref|ZP_06105654.1| two-component system response regulator [Brucella melitensis bv. 3 str. Ether] gi|265996340|ref|ZP_06108897.1| two-component system response regulator [Brucella ceti M490/95/1] gi|294853717|ref|ZP_06794389.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026] gi|297249702|ref|ZP_06933403.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Brucella abortus bv. 5 str. B3196] gi|17984986|gb|AAL54033.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23463825|gb|AAN33666.1| transcriptional regulatory protein OmpR, putative [Brucella suis 1330] gi|62197851|gb|AAX76150.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1 str. 9-941] gi|82939915|emb|CAJ12928.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|163675360|gb|ABY39470.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189021481|gb|ACD74202.1| Response regulator receiver [Brucella abortus S19] gi|225642381|gb|ACO02294.1| Probable transcriptional regulator ycf27 [Brucella melitensis ATCC 23457] gi|237788018|gb|EEP62234.1| Probable transcriptional regulator ycf27 [Brucella abortus str. 2308 A] gi|260098161|gb|EEW82035.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260152222|gb|EEW87315.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260670503|gb|EEX57443.1| two-component system response regulator [Brucella abortus bv. 4 str. 292] gi|260673844|gb|EEX60665.1| two-component system response regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676863|gb|EEX63684.1| two-component system response regulator [Brucella abortus bv. 6 str. 870] gi|260872098|gb|EEX79167.1| two-component system response regulator [Brucella abortus bv. 9 str. C68] gi|260918897|gb|EEX85550.1| two-component system response regulator [Brucella ceti B1/94] gi|261298533|gb|EEY02030.1| two-component system response regulator [Brucella pinnipedialis B2/94] gi|261302479|gb|EEY05976.1| two-component system response regulator [Brucella pinnipedialis M163/99/10] gi|261739946|gb|EEY27872.1| two-component system response regulator [Brucella suis bv. 5 str. 513] gi|261743219|gb|EEY31145.1| two-component system response regulator [Brucella suis bv. 3 str. 686] gi|262550637|gb|EEZ06798.1| two-component system response regulator [Brucella ceti M490/95/1] gi|262763967|gb|EEZ09999.1| two-component system response regulator [Brucella melitensis bv. 3 str. Ether] gi|263000463|gb|EEZ13153.1| two-component system response regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092372|gb|EEZ16625.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|264658887|gb|EEZ29148.1| two-component system response regulator [Brucella pinnipedialis M292/94/1] gi|294819372|gb|EFG36372.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026] gi|297173571|gb|EFH32935.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Brucella abortus bv. 5 str. B3196] gi|326410637|gb|ADZ67701.1| Response regulator receiver [Brucella melitensis M28] gi|326553929|gb|ADZ88568.1| Response regulator receiver [Brucella melitensis M5-90] Length = 238 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L + ++ G NG E L++ + D++I+D+ L SG+ Sbjct: 5 AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ +P+I +TA A D+ + G + YI+KP + I+ + Sbjct: 65 EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121 >gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IV+D+ +L +E G+ + +G++AL + K ++ I+DI + + Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|298482963|ref|ZP_07001145.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298270935|gb|EFI12514.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1315 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + + +G+EAL+L R H PD+I+ D+ + ++G E+ Sbjct: 1060 ILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTRNHAPDIIVSDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP+I +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIILLTARNDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|258592344|emb|CBE68653.1| Response regulator receiver modulated metal dependent phosphohydrolase (fragment) [NC10 bacterium 'Dutch sediment'] Length = 336 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++N L ++ GY + +G ALEL PD+I++D+ + +SG E Sbjct: 11 TILVVDDQQVNCTLVETILAPQGYEIISALDGERALELVAARPPDLILLDVIMPGMSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++KE+ + IP++ VT+ + D R + G + ++SKP + + + Sbjct: 71 VCTRLKENERTRLIPIVMVTSLSDLQDRIRGIEVGADDFLSKPFHPAELSARARSLL 127 >gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] Length = 230 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides DSM 266] Length = 236 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED++ KL +E +GY + G +ALE + + D++++D+ L I G ++ Sbjct: 7 LVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLMLPGIDGFDVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+++ L++IP+I +TA + D+ + G + Y+ KP S I+ + Sbjct: 67 RKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILKR 123 >gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 240 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 11/127 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--------HKPDVIIMDIQ 55 V+IVED E + L+E G+ +G AL+ D++++D+ Sbjct: 8 HVLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLM 67 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 L +SG E+ +Q++ +PVI VTA + D+ + G + Y++KP S + Sbjct: 68 LPGMSGTEVCRQLRS---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIAR 124 Query: 116 IKKYIGE 122 I+ + Sbjct: 125 IRAVLRR 131 >gi|237711967|ref|ZP_04542448.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454662|gb|EEO60383.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1383 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L L+ Y L+ NG EALE+ + + D+I+ D+ + E+ G+E Sbjct: 1133 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1191 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K E IP+I +TA D + G + YI KP+ LS+ I + Sbjct: 1192 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1250 >gi|153807551|ref|ZP_01960219.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185] gi|149129913|gb|EDM21125.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185] Length = 1381 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVED++ + L Y L NG E +++A + PD+II D+ + G Sbjct: 1125 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDMAMKELPDLIICDVMMPIKDGF 1183 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++KE E IP I +TA D + G + Y+ KP + I + I Sbjct: 1184 ECCREVKECPETCSIPFIMLTAKVEDDDIIHGLELGADDYVLKPFTPGILKAKVSNLI 1241 >gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110] gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110] Length = 223 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + ++ GY NG + ELA Q+ D++I+D L GL Sbjct: 2 KILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNYDLLILDWMLPGKPGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S+ Q PV+ +TA D G + Y+ KP L M ++ + Sbjct: 62 ICQELR--SQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRR 118 >gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8] gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8] Length = 225 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ +++ + +G+ L+ +G +ALEL Q D++I+D+ L ++ GLE Sbjct: 2 KVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELFPQA--DLVILDLMLPKVGGLE 59 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I++ E E+P++ +TA + D + G + Y+ KP S + +K + A Sbjct: 60 VARLIRQ--ERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRRA 117 >gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e] gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland 1988] gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL R2-561] gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S] gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161] gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e] gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] Length = 220 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I ED+ + + + +GY + +NG+EA L ++ D+IIMDI + + G Sbjct: 1 MEKILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKETFDLIIMDIMMPSMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T+ I+ P++ +TA + + DE + G + YI KP S + ++ ++ + Sbjct: 61 YTLTELIRS---TSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 239 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L+R ++E +G+ + NG +AL+ + ++II DI + ++ G Sbjct: 18 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ S + PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 78 YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 135 Query: 122 EA 123 + Sbjct: 136 RS 137 >gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + L + GY L+ +G+EAL+++ ++ D++I+DI + ++ G+E+ Sbjct: 6 VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIMMPKMDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + +P+I ++A + D+ G + Y+ KP + + +K + Sbjct: 66 CMRMRKS---KNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRR 120 >gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 231 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED +L RD E +G+ G E L+LA +II+D+QL ++ Sbjct: 1 MATRILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ I+++ +E+P++ V+A + D+ R G + YI+KP S S + K ++ Sbjct: 61 GYELCSHIRKN---KEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHL 117 >gi|170077968|ref|YP_001734606.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885637|gb|ACA99350.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 372 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ N+ L + ++E + NG +ALEL Q +I++D+ + + G E Sbjct: 9 RVLVVDDSPDNLLLIQSILEDEDLDLVTVNNGQKALELVAQQPFHLILLDVMMPHMDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 IT+ I+ D ++ IP++ +TA A G + +I KP+ + + ++ + Sbjct: 69 ITRHIRNDPDIPYIPILLITAHAQPS-VALGLDIGADDFIRKPVEIDELIARVRSLLR 125 >gi|148284174|ref|YP_001248264.1| response regulator PleD [Orientia tsutsugamushi str. Boryong] gi|146739613|emb|CAM79396.1| PleD-like response regulator, receivor domain/GGDEF domain [Orientia tsutsugamushi str. Boryong] Length = 489 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D E N KL + T Y NG EA+++ K DV+++DI + + Sbjct: 1 MTAAILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEAIKIDVVLLDIVMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K IK + + IPVI +TA + D+ + + G + +++KPI +K + Sbjct: 61 GFELCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 48.6 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 54/140 (38%), Gaps = 23/140 (16%) Query: 4 KVMIVEDNEL----NMKLFRDLIET-SGYIALQTRNGMEAL-----ELARQHKPDVIIMD 53 ++I++D+ + ++ L + + + + L ++A PD++I++ Sbjct: 168 TILIIDDDAIWFNRISEIITCLTKKVELFECINYTDNKNKLLTDLEKIATSLVPDLLIIN 227 Query: 54 IQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMK----GDE-----ERIRKGGCEAYIS 104 Q+ L + ++ EL++ I +T +++ D + + G + Sbjct: 228 NQIILEDPLRVYAILRSKDELKQSAFILLTEDSLENRDHDDISTDKLLKGLEMGINDFF- 286 Query: 105 KPISLS--IFMETIKKYIGE 122 P S+ + IK + Sbjct: 287 -PYSIDNNELLARIKTQLRR 305 >gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + ++ G L+ ++G+EALE+ +++ +II+D+ + ++ G+ Sbjct: 6 VLVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEILNENQVHLIILDVMMPKLDGISA 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E + IP+I ++A D+ + G + Y++KP + + +K + Sbjct: 66 TYKIREK---KNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120 >gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261] gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261] Length = 231 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALE+ ++ D+II DI + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + + P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|301062173|ref|ZP_07202858.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300443726|gb|EFK07806.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 175 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 72/120 (60%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN + +KL R L+E+ Y+ + +NG+EAL+LA PD+++ D + E+ G+ Sbjct: 55 KILVVDDNLVVLKLLRHLLESQDYLVITAQNGVEALKLASTEDPDMVVTDYVMPEMDGVA 114 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K++K E + IP++ +TA + E G + Y++KPI+ F+ + + + + Sbjct: 115 LIKELKRRKETRNIPIMMLTAKDEEESELEGLDAGADDYLTKPIARKRFLARVARLLKRS 174 >gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1705 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 V++VEDNELN +L +L+ ++G NG EALE + + D ++MD Q+ + G Sbjct: 1366 AHVLLVEDNELNQELALELLVSNGLSVEIAANGREALERLAGESRFDGVLMDCQMPVMDG 1425 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+E EL +PVIA+TA M GD E+ G +I KPI++ T+ K+I Sbjct: 1426 YTATRAIREQPELAGLPVIAMTANVMSGDREKALAAGMNDHIGKPINVREMFATLAKWIR 1485 Query: 122 EA 123 A Sbjct: 1486 PA 1487 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA----RQHKPDVIIMDIQLQEI 59 ++++V+DN ++ ++ G+ +G EAL+ R D+++MD ++ E+ Sbjct: 1218 RILVVDDNATAREILTQMLLAFGFAVESAASGREALDRLRVVDRLEPFDLVLMDWKMPEM 1277 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G+E +++ +E+ + P +I VTA+ + + + G +++KP++ S ++ I Sbjct: 1278 DGIETIRRLCAQTEITQAPALIMVTAYGHEAAHQVAVELGVSGFLTKPVTSSNLLDAIMH 1337 Query: 119 YIGE 122 +G Sbjct: 1338 AVGR 1341 >gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 356 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SGY L +G +AL+ A Q +PD++++D + I G E+ Sbjct: 20 VLIVDDVPDNLAVLHDALDESGYTVLIATSGEQALQRAAQARPDIVLLDAMMPGIDGFEV 79 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121 +++K D+ IP++ +T + G Y++KPI + + ++ Sbjct: 80 ARRLKADAATAHIPIVFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVLARMNVHLQGAR 139 Query: 122 EA 123 A Sbjct: 140 RA 141 >gi|212691672|ref|ZP_03299800.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855] gi|265753202|ref|ZP_06088771.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|212665861|gb|EEB26433.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855] gi|263236388|gb|EEZ21883.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1386 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L L+ Y L+ NG EALE+ + + D+I+ D+ + E+ G+E Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K E IP+I +TA D + G + YI KP+ LS+ I + Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253 >gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 247 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D+ + L + + G+ NG+ ++ +P ++++DI + E+ Sbjct: 1 MNQTILIVDDDPVVRDLVSEYLHGRGFQVATLENGLALQRRLQRERPALVVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA A D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis raciborskii T3] Length = 272 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 +V+IVED EL ++ +E GY + ++G A+EL R + D++++D+ L Sbjct: 42 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ IP++ ++A + D + G + Y++KP S+ + Sbjct: 102 PQINGLDICRLLRHQGN--SIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARC 159 Query: 117 KKYIGE 122 + + Sbjct: 160 RALLRR 165 >gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 14 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 73 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 74 LEVARRLRAEGHT--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 131 Query: 122 E 122 Sbjct: 132 R 132 >gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 234 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ + K D++I+DI + + G ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 74 CLELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 >gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 233 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L + +++ ++++DI + +I G+ Sbjct: 5 TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+E +E+P+I ++A D+ G + Y++KP + M IK + Sbjct: 65 MCMKIRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRR 120 >gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21] gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 234 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + +E GY+ +G EALE + K D+II+D+ L I G E+ Sbjct: 8 ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEKFDLIILDVMLPGIGGFEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ +PV+ +TA + + D G + Y+ KP +L F+ + + + Sbjct: 68 CERIRALD--SRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRS 124 >gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella excrementihominis YIT 11859] gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella excrementihominis YIT 11859] Length = 260 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L R + +G+ N + L + + D +++D+ + G+ Sbjct: 21 RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGIS 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+I+ ++ P++ +TA D + G + Y+ KP + + + + Sbjct: 81 ILKRIRASNDT--TPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRR 137 >gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L + +E Y + NG EA+ + D+I++D+ + G+E Sbjct: 8 KILVVDDEARIRRLLKMYLEREEYEIEEAENGDEAIVKGLETDYDLILLDLMMPGTDGIE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI+E + P+I +TA + + + + G + YI KP S + +K + A Sbjct: 68 VCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 >gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] Length = 232 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++L ++ GY ++ +G+EA+ + + ++++D+ + + G+E+ Sbjct: 6 ILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPTMDGVEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E IPV+ ++A + D+ G + YI+KP S+ + +K + Sbjct: 66 CRRIREKF---NIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLRR 120 >gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 >gi|71066368|ref|YP_265095.1| putative hybrid two-component sensor and regulatory protein [Psychrobacter arcticus 273-4] gi|71039353|gb|AAZ19661.1| putative hybrid two-component sensor and regulatory protein [Psychrobacter arcticus 273-4] Length = 2284 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 68/119 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ K+ +E G+ + ++G++ALE+ ++ PD++++DI++ + G E Sbjct: 2160 TILVVDDSVTVRKVTSRFLERHGFNVVLAKDGIDALEILQEMTPDLMLLDIEMPRMDGFE 2219 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + LQ +P+I +T+ + ER K G YI KP + ++ I+ + E Sbjct: 2220 VATQVRLNGCLQHLPIIMITSRTGERHRERALKIGVNDYIGKPFQENQLLDKIQSLLDE 2278 >gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 223 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|313115296|ref|ZP_07800772.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622380|gb|EFQ05859.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 231 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D+ +++ + +GY +G EAL + ++ +P +I++D+ + ++ G Sbjct: 5 KILLVDDDRDVLEMLLSIFRRAGYTNLRTAASGAEALRIWQEEQPSLIVLDVMMPDMDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ +PV+ +TA D + G + Y++KP + + + Sbjct: 65 SVLKKIR---RTSRVPVLMLTARGEAEDRIEGLEIGADDYLAKPFLPKELLLRVGAILSR 121 Query: 123 A 123 A Sbjct: 122 A 122 >gi|307324561|ref|ZP_07603768.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306889805|gb|EFN20784.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 257 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+E+ + +E GY +G+ L L R D++++D+ L + G+ Sbjct: 15 TVLLVEDDEVIRRSVGMALERYGYRVSTAGDGLTGLALFRAGGHDLLLLDVMLPGLDGIG 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E S P++ ++A D + G + Y+ KP+ ++ + I+ + A Sbjct: 75 LCRRIRETSMD---PILMMSARGDDLDVISGLEAGADDYVVKPVDTAVLVARIRSLLRRA 131 >gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ +L +E + +G ++ +++PD+I++D+ L + Sbjct: 1 MKQKILVVDDDSNICELLVVYLE-EDFQVKTVFDGNNLEQVISEYRPDLILLDVMLPGKN 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+ + EIP+I ++A + D+ + G + YI+KP S + +K + Sbjct: 60 GFDICREIR---DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED+ +L RD +E S + +G + +E A D++I+D+ L I G Sbjct: 1 MKKILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++E+ +IPVI V+A D+ R G + Y++KP S S + +K +I Sbjct: 61 FNVCRRLREEL---DIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254413786|ref|ZP_05027555.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179383|gb|EDX74378.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1038 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ EDN +N L L++ GY A +G+EALE + D++ MD+Q+ + GL Sbjct: 792 RRILVAEDNLVNQLLAVRLLQRMGYRADVVSDGLEALEALHRQPYDMVFMDVQMPHMDGL 851 Query: 63 EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E T++I + P +IA+TA AM+ D + K G + YISKPI + + + + Sbjct: 852 EATQRICQTWNAATRPRIIAMTANAMESDRQECLKAGMDDYISKPIRVEELVRVLNQ 908 Score = 104 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+++IV+DN N E + + EA+ L Q D+ I+D+Q+ ++ G Sbjct: 647 KRLLIVDDNATNRDFLSRQAEAWSMVTDTASSAAEAIALIEQEPSFDLAILDMQMPQVDG 706 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 L + +++ + Q++P+I +T+ + E + A+++KPI S + Sbjct: 707 LSLAATLRQRPDCQQLPLIMLTSIGIPEKELNAAQVDFAAFLNKPIKQSQLYSVL 761 >gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium 6_1_63FAA] gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium 6_1_63FAA] Length = 235 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 69/125 (55%), Gaps = 7/125 (5%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQ 57 +K+V+I++D++ L + IE A+ +G+E L++ ++++ +II+D+ + Sbjct: 1 MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G ++ K+I+E + IPV+ +TA + + D+ + G + Y++KP S++ + Sbjct: 61 YMDGFQVLKKIRE---VSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVH 117 Query: 118 KYIGE 122 I Sbjct: 118 SLIRR 122 >gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 234 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218440687|ref|YP_002379016.1| response regulator receiver protein [Cyanothece sp. PCC 7424] gi|218173415|gb|ACK72148.1| response regulator receiver protein [Cyanothece sp. PCC 7424] Length = 124 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D E + + GY +G+ AL++ +++ PD++I+D+ L E+ G Sbjct: 1 MYHILLIDDEEPLLASLSFYLIKEGYKVTTAADGLTALKVIQENMPDILILDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +I+ ++P++ +TA + D+ K G + Y++KP S + I+ + Sbjct: 61 IELFWRIRA---FSDVPILMLTAKDHEADKVWGLKSGADDYVTKPFSTRELIARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED E K ++ GY +G L+ A + DVI++D+ L E++G Sbjct: 1 MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E ++ P+I +TA D G + Y+ KP ++ + I+ + Sbjct: 61 LEVARRLRES---KKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 226 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+++V+D E KL +D + GY L+ +G +A+++ ++ ++I+D+ + ++ G Sbjct: 5 KILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E K I+ ++P+I +TA + + DE + G + YI+KP S I + I+ + Sbjct: 65 ETCKTIR---RYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRR 121 >gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 233 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + + ++ GY + +G EAL+ +KP ++++D+ L I+ Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K++ E + I +I +TA D+ + G + Y++KP + + IK I Sbjct: 61 GYDVCKRL----EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLI 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 235 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ +++ + GY +G +ALE+AR + P+++++DI + + G+E Sbjct: 12 RVLVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVARTYMPELVLLDIMMPHLDGIE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+++ EL++ ++ +TA + + E G + YI+KPI M I Sbjct: 72 AGRQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRR 130 >gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ +D + R +E +GY ++ +G +AL++ DV ++DI + E+ Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+++E ++PVI V+A ++ G + Y+ KP + + + I Sbjct: 61 GYQVLKRLRE---TSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1203 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 44/118 (37%), Positives = 73/118 (61%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N ++ +L++++GY NG AL++ D ++MDIQ+ + GL Sbjct: 1081 ILLVEDNFINQQVATELLKSAGYTVDVAENGQIALDMIDSANYDAVLMDIQMPVMDGLTA 1140 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK++++ E+PVIA+TA AM GD E+ G A+I+KPI L+ ET+ +I E Sbjct: 1141 TKELRKRYSATELPVIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELFETLSHWIEE 1198 Score = 91.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++++DN ++++ ++ + +G E L ++ D++++D + E+ G+ Sbjct: 937 KTLVIDDNPTALQIYSSVMRDFHFSVDTAASGPEGLYKLSKNPVDLLLLDWMMPEMDGIA 996 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + ++I +L + P +I +TA+A + + I A + KP S + I Sbjct: 997 VIEEIDDMVASGKLAKRPVIIMMTAYAAEPMHKDIAGSNVFALLQKPFKASSLFDEI 1053 >gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 226 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D ++ R + G+ G AL A + +P+V+++D+ L ++ G Sbjct: 1 MTRVLVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ +PVI ++A ++ G + Y++KP + + ++ + Sbjct: 61 FEVLAGLR---GWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 245 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ +G EA+ + R+ +PD +++D+ L ++ GL Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGLT 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ EL +IPV+ +TA D G + Y++KP SL + ++ + + Sbjct: 81 VLGRLRR--ELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRS 138 >gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 226 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 2198 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK +IV+D+ N+ ++E L NG E + + DV++MD+ + E+ G Sbjct: 2078 KKALIVDDDVRNIFALTSMLERYQIQVLYAENGREGINVLENTPDIDVVLMDVMMPEMDG 2137 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T I+++ + + +P+IA+TA AM+GD E+ + G YI+KP+ + ++ ++ Sbjct: 2138 YETTSLIRQNEQFKSLPIIALTAKAMQGDREKCIEAGASDYITKPVDTEQLLSLLRVWL 2196 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 4/117 (3%) Query: 1 MLKKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M +V+ IVED+ ++ D+ + G+ + +NG L LA+Q P +++DI++ E+ Sbjct: 1807 MGDRVLLIVEDDVNFARILIDMAQQHGFKVITAQNGSTGLALAQQFYPSAVLLDIRMPEM 1866 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G + ++K D + IPV +T ++ ++R + G AY+ KP+S I E + Sbjct: 1867 DGWTVLDRLKHDPNTRHIPVHIMT---VEEGQQRSLQLGAIAYLQKPLSSEIISEAL 1920 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++ +LI S G EALE R D +++D+ L +++G Sbjct: 1932 KNLLVVEDDDTQRHSIVELIGNSDVHTTAVATGAEALEAIRTKHFDCLVLDLGLPDMTGF 1991 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +QIK + +P+I T + +E + E I K + S ++ Sbjct: 1992 ELIEQIKLLPHGKTLPIIVYTGRDISKAQETELRRIAETIIIKDVRSPERLLD 2044 >gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187] gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1] gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187] gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1] gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +M+V+D + +L ++ GY LQ +G E LEL ++++ +I++DI + +I Sbjct: 1 MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + +++E + E+P+I ++A D+ G + Y++KP + + IK Sbjct: 61 DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L] gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4] gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7] gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 241 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + +I++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQGST--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16] gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16] Length = 238 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++MIV+D L ++ GY + +ALE Q + D+ I+D+ L ++ Sbjct: 7 MSAEIMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALECVEQKRLDLAILDVMLPDMD 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E P++ +TA D+ G + YI+KP + + +K + Sbjct: 67 GFTLCQKIRESHLF---PILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQL 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|327543489|gb|EGF29908.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 239 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I ED+ +L+ GY +G+ A ++ D++ +D+ + SG Sbjct: 1 MTRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKNFDLVCLDVMMPMKSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + ++ + PVI +TA + D+ + G + YISKP + +K + Sbjct: 61 FDVCRLLRAEDH--RTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|325281460|ref|YP_004254002.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] gi|324313269|gb|ADY33822.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] Length = 229 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED+ L ++ + G+ + +G A E D+ I+D+ + + G Sbjct: 6 KILLAEDDTNLGMLLKEYLRAKGFETVLCEDGEVAYEAFLNQPFDICILDVMMPKKDGFT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+I++ + EIP+I +TA MK D K G + Y+SKP S+ + I+ + + Sbjct: 66 LAKEIRQIN--SEIPIIFLTAKNMKEDVLEGFKLGADDYMSKPFSMEELLLRIEAVLRRS 123 >gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E + ++ Y+ +G + + + D+II+D+ L ++SG Sbjct: 2 RILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVMLPKLSGTA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++++ + PV+ +TA D+ + G + Y+ KP L I+ + + Sbjct: 62 LCQRLRDTGYM--TPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRS 119 >gi|224538526|ref|ZP_03679065.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM 14838] gi|224519864|gb|EEF88969.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM 14838] Length = 1370 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 64/112 (57%), Gaps = 1/112 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+E K + + + + NG EAL + + +PD+II DI + E+ GL Sbjct: 1106 RVLVVEDDEEIRKYICRELASD-FHMSECTNGKEALAMILKKEPDLIISDIMMPEMDGLT 1164 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + K+IK++ + IP+I +TA + + D G +AYI KP S+ I +T Sbjct: 1165 LCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKT 1216 >gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1991 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 55/117 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN L+ NG +ALE R PD+++ D+ + + G Sbjct: 1620 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1679 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ D + + IP+I ++A A + G + Y+ KP S + ++ ++ Sbjct: 1680 LVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHL 1736 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN L+ + G AL AR + P +II D+ + ++GL Sbjct: 604 ARILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGL 662 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + ++ D+ + IP++ ++A A + + G + Y+ KP S + + + Sbjct: 663 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALL 720 >gi|109898155|ref|YP_661410.1| two component AraC family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700436|gb|ABG40356.1| two component transcriptional regulator, AraC family [Pseudoalteromonas atlantica T6c] Length = 1341 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++++DN + + Y Q NG E L A PDVII D+ + ++ GL Sbjct: 1098 TVLVIDDNAELRQFIALRLSGY-YRITQAENGEEGLAKAISVLPDVIICDVMMPKMDGLT 1156 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++ + + IP+I ++A + K D + G + Y++KP S + + + Sbjct: 1157 LMHHLRGNQHTRSIPIILLSAKSAKRDTVEGLQRGADDYLTKPFDTSELVARVDAQLR 1214 >gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330468337|ref|YP_004406080.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811308|gb|AEB45480.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D ++ + GY G +AL+ A +H PD++++D+ L ++ G Sbjct: 1 MNRILVVDDEPQILRALGINLRARGYDVQVAATGTDALKAAARHPPDLVVLDLGLPDLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++ +P+I ++ A D+ G + Y++KP + + I+ Sbjct: 61 VEVIRGLR---GWTGVPIIVLSGRAGSDDKVTALDAGADDYVTKPFGVDELLARIRAVTR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098] Length = 226 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1831 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1710 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1769 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1770 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1829 >gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +M+V+D + +L ++ GY LQ NG E LEL ++++ +I++DI + +I Sbjct: 1 MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + +++E + E+P+I ++A D+ G + Y++KP + + IK Sbjct: 61 DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis serovar finitimus YBT-020] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++VED + ++ +E GY GM+ L+ + D++++D+ L E+ Sbjct: 1 MNKGKILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPEL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGLE+ +++++ + P+I +TA D+ G YI+KP + + I+ Sbjct: 61 SGLEVLRRVRKTNTA--TPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQ 118 Query: 120 IG 121 + Sbjct: 119 LR 120 >gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 241 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I++D+E L + + G+ + + L + PD++I+D+ L + GL Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ DS IP+I +TA D + G + Y+ KP + I+ + Sbjct: 77 VCREVRADSR---IPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR 132 >gi|90021568|ref|YP_527395.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89951168|gb|ABD81183.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 569 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59 K+++V+DN +N ++ ++E + NG +AL + D+I+MD Q+ + Sbjct: 295 SPKILLVDDNAVNREVILGILEDEDFQIETAVNGQDALAALTRSSLNFDLILMDCQMPVM 354 Query: 60 SGLEITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G + T++I+ + IP+IA+TA AM GD+E G Y+SKPI + I Sbjct: 355 DGYKATREIRSSEILKHYKHIPIIALTANAMAGDKETCLASGMSDYLSKPIDGEQLLLII 414 Query: 117 KKYI 120 K+I Sbjct: 415 SKWI 418 >gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3] gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 241 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + +I++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQGST--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|117620336|ref|YP_857562.1| two-component hybrid sensor and regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561743|gb|ABK38691.1| two-component hybrid sensor and regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 376 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 65/120 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D N + R L+E +GY + +G++A++ A + PD+++MDI + + G Sbjct: 1 MSEILIVDDMASNRYILRSLLEEAGYRVREATDGLQAVDTATEFPPDLVLMDINMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++IK+ +PV+ ++ + G E+ + G Y+SKP + ++ + Sbjct: 61 YEACRRIKQLPGQWCLPVLFISTNSGIGALEQAFQAGGCDYVSKPFHQLEVLARVQNQLR 120 >gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)] Length = 225 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED+E + G+ +G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|125974330|ref|YP_001038240.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256003450|ref|ZP_05428440.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|125714555|gb|ABN53047.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255992474|gb|EEU02566.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|316941477|gb|ADU75511.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 363 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D ++ + ++ S + +G AL+L Q KPD+I++DI + E+ G E+ Sbjct: 12 ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQKPDLILLDIYMPEMDGFEL 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK +L+ IPVI +T+F+ + + + G + Y+ KP + S + +K ++ Sbjct: 72 CRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHL 127 >gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED D + GY +G+ AL +PD +++D+ + + GL Sbjct: 6 RILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVMMPALDGLA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + PV+ +TA + + + G + Y+ KP +L + ++ + A Sbjct: 66 VCRRLRAMED--RTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRA 123 >gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 231 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + + + +GY NG AL ++R D+ ++DI + ++G E Sbjct: 7 TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PV+ ++A + D+ + G + Y++KP + + ++ + Sbjct: 67 LCRNLRTRT---NAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR 122 >gi|237725777|ref|ZP_04556258.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435585|gb|EEO45662.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1386 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L L+ Y L+ NG EALE+ + + D+I+ D+ + E+ G+E Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K E IP+I +TA D + G + YI KP+ LS+ I + Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253 >gi|255691123|ref|ZP_05414798.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623476|gb|EEX46347.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1523 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ R + S Y ++ +GME A ++ PD+II D+ + E G+E+T Sbjct: 1240 LLVEDNQELRVFLRSIF-ASNYRVVEAADGMEGWSKALKYVPDIIISDVMMPEKDGIEMT 1298 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP+I +TA + + G + YI+KP S + ++ + + Sbjct: 1299 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLSQ 1355 >gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 222 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L +D ++ GY +G +ALE R PD+I++D+ L + GL + Sbjct: 6 ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLMLPGLDGLSV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + + P+I VTA + D + G + Y+ KP S + +K + Sbjct: 66 CREAR---RFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRR 120 >gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] Length = 1324 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDNE+N ++ L++ +G + NG EAL+ + D+++MD+Q+ + G+ Sbjct: 992 QTLLLVEDNEVNQEVALGLLQETGLSVIVANNGQEALQRLAEKSFDLVLMDMQMPVMDGI 1051 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ D + +P++A+TA AM D E + G ++SKPI + F +K+++ Sbjct: 1052 TATKKIRADERWKTLPIVAMTANAMATDIEHCTQAGMNDHLSKPIDVDKFYHVLKQFL 1109 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 55/114 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ ++K ++ VTA+ + ++ I KP++ S ++ I Sbjct: 912 ELLTRVKSLGLREQTKCFLVTAYGRDIHLDSENSKLVDSLIVKPVNPSNLLDAI 965 >gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IV+D+ +L +E G+ + +G++AL + + ++ I+DI + + Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVRVEMAIIDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 61 GFDLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 224 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++V+D L R +E GY L +G EA+E + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG-PDVLILDVMLPDTD 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G ALE + D++++D+ L +SG Sbjct: 1 MTRVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRTLRQKS---NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1] gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1] gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] Length = 230 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|73666930|ref|YP_302946.1| response regulator PleD [Ehrlichia canis str. Jake] gi|72394071|gb|AAZ68348.1| response regulator receiver modulated diguanylate cyclase [Ehrlichia canis str. Jake] Length = 458 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IV+D N+KL + + + Y L NGM+A+++A + PD+I++D+ + E+ Sbjct: 1 MTAKVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHPDIILLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K++K + IP++ VTA D G + +++KPI+ + I+ Sbjct: 61 GYETCKRLKSNPATTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPINDTALFARIRSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 76.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+++ + + ++++ S + + + +AL L+ D+II D++ GL + Sbjct: 159 ILIVDEDVIRSEHINNILQKSFQQTVVSHDIDQALNLSNIQNYDLIITDLEFSG-DGLRL 217 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYIG 121 Q++ E + P++ + D + G YI+ P+ + + + + Sbjct: 218 CSQLRNKIETRYTPILVL--LDENEDPKLLSKAFDIGIHDYITTPVDSNELIARVNVQVK 275 Query: 122 E 122 Sbjct: 276 R 276 >gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 226 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IVED + + +ET G+ + +G L + D+II+DI L ++S Sbjct: 1 MKPRVLIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTVDLIILDIGLPDMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I++ PVI +TA + D + G + Y++KP S ++ + Sbjct: 61 GMELCKEIRKS---HSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] Length = 243 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + +++ Y +G EAL+ D +I+DI L + G E Sbjct: 18 RILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIMLPKKDGFE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+I+E + + PV+ +TA D + G + Y+ KP + + ++ + ++ Sbjct: 78 VLKKIREKNI--KTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKS 135 >gi|302877367|ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580156|gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 632 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 60/116 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L++ L+E SG+ NG EALE + P +II D + E+ G+E Sbjct: 322 RILLVDDDRAIRLLYKTLLEKSGHTVTTACNGREALESLQASVPQLIISDWMMPEMDGIE 381 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++++++ E +I V VTA + G Y+SKPI+ + ++ Sbjct: 382 FCRELRKNPEWHKIYVFIVTAQESTDRLIEAFEAGANDYLSKPINPKVLAARLRSA 437 >gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119] gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119] gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] Length = 219 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + + + GY +G LE A + D+II+D+ L I+G Sbjct: 1 MTNILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +++++ +Q P+I +TA + D+ G + YI KP + I+ + Sbjct: 61 LEICRRVRQ---VQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820] gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|83721603|ref|YP_441449.1| DNA-binding response regulator OmpR [Burkholderia thailandensis E264] gi|83655428|gb|ABC39491.1| DNA-binding response regulator OmpR [Burkholderia thailandensis E264] Length = 259 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 19 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 78 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + + + Sbjct: 79 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 136 Query: 121 GE 122 Sbjct: 137 RR 138 >gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1917 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++E + NG E + L DV++MD+ + E+ G Sbjct: 1797 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTQDIDVVLMDVMMPEMDG 1856 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I++ + + +P+IA+TA AM+GD ++ G YI+KP+ + ++ ++ Sbjct: 1857 YETMQLIRKKEQFRALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWL 1915 Score = 112 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ D+ G+ L + G L+LA+ +P I++DI+L E+ G + Sbjct: 1532 LIIEDDVNFARILVDMARQHGFQVLSAQTGTAGLKLAKDFQPMAILLDIRLPEMDGWTVL 1591 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++K D + IPV +T ++ +R + G AY+ KP++ E + K Sbjct: 1592 DRLKHDPTTRHIPVHIMT---VEEGRQRGLQLGAIAYLQKPVTSEAISEALDKI 1642 Score = 84.8 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED+EL + +LI S + G ALE R + D +++D+ L +++G Sbjct: 1651 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQQFDCLVLDLGLPDMTGF 1710 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +QIK ++ +P+I T + +E + E I K + S ++ Sbjct: 1711 ELMEQIKREANGATLPIIVYTGREISKTQETELRRIAETIIVKDVRSPERLLD 1763 >gi|300867480|ref|ZP_07112131.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300334474|emb|CBN57299.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 378 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ GY + NG AL ++ P +I++D+ + +++G E+ Sbjct: 13 ILVVDDTPDNVRLLSTILTEEGYQVRKALNGQRALTTIQEFPPALILLDVMMPDMNGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K+ + IPVI ++A D+ + + G YI+KP + + + Sbjct: 73 CKKLKDSPQTSSIPVIFLSALDHVLDKVKAFEVGGVDYITKPFQEREVLVRVANQL 128 >gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 224 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + + +E Y L +G E L++A D+II+D L + GL Sbjct: 2 RILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ PV+ +TA D G + Y++KP + + + ++ + + Sbjct: 62 VLKELRNQKNA--TPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRS 119 >gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1233 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 75/116 (64%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N ++ +L++++GY + NG AL+L + + D ++MDIQ+ + GL Sbjct: 1112 ILLVEDNFINQQVASELLKSAGYDVVIADNGQIALDLVAKQEFDAVLMDIQMPVMDGLTA 1171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K ++E Q++P+IA+TA AM GD+E+ G A+I+KPI L+ ET+ +I Sbjct: 1172 AKILRETYSTQQLPIIAMTAHAMSGDKEKSLNAGMNAHITKPIVLTELFETLAYWI 1227 Score = 63.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 14/120 (11%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG---L 62 ++V+DN ++++ L+ + G EA+E Q D++++D + +SG + Sbjct: 970 LVVDDNPSALQIYSTLLRDFSFGVNTATGGAEAIERLLQQDIDLLLLDWMMPVVSGGMVI 1029 Query: 63 EITKQIKEDSELQEIP-VIAVTAFAMKG-----DEERIRKGGCEAYISKPISLSIFMETI 116 + ++ D L++ P +I +TA++ + D+ + + KP S + I Sbjct: 1030 KAVDEMIADGRLKKRPVIIIMTAYSTEPLNLELDKYEYQAV-----LQKPFKASSLFDEI 1084 >gi|15965046|ref|NP_385399.1| putative 2-component receiver domain protein [Sinorhizobium meliloti 1021] gi|150396148|ref|YP_001326615.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|307301118|ref|ZP_07580887.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] gi|307317851|ref|ZP_07597289.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|15074225|emb|CAC45872.1| DivK cell division response regulator, essential cell cycle regulator [Sinorhizobium meliloti 1021] gi|150027663|gb|ABR59780.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|306896613|gb|EFN27361.1| response regulator receiver protein [Sinorhizobium meliloti AK83] gi|306904073|gb|EFN34659.1| response regulator receiver protein [Sinorhizobium meliloti BL225C] Length = 123 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 96/123 (78%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+VMIVEDNELNMKLFRDLIE SGY +QTRNGMEALELAR+H+PD+I+MDIQL E+S Sbjct: 1 MPKQVMIVEDNELNMKLFRDLIEASGYATIQTRNGMEALELARKHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|331017297|gb|EGH97353.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 160 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L D ++ +GY+ + +G+ AL ++ +PD+I++D + + G E Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALMRIQRRRPDLILLDAMMPGMDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIK+ + IPV+ +TA + G Y+ KPI + + + ++ A Sbjct: 73 CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131 >gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 907 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63 V+IV+D+ N+ +E+ + NG +A+E+ +K D+++MDI + + G E Sbjct: 784 VLIVDDDMRNVFALTAALESQNMEVVFAENGSDAIEMLEGNKTIDIVLMDIMMPVMDGYE 843 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K I+ + +E+P+IA+TA AMK D E+ + G YISKP+ + + +K ++ Sbjct: 844 AMKAIRTYEQFKELPIIALTAKAMKNDREKCIQAGASDYISKPVDMEQLLSLMKVWL 900 >gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D++ L + ++ A G E L+ R+ + ++++D+ + + G Sbjct: 1 MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+++ +P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKE---YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|209528024|ref|ZP_03276505.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491543|gb|EDZ91917.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 254 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY +G+ LA Q PD+II+D+ L ++ G Sbjct: 1 MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQALALQLLPDLIILDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D +IPV+ +TA D+ G + Y++KP L + ++ + Sbjct: 61 FTVCQRLRRDERTGDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|281418386|ref|ZP_06249406.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|281409788|gb|EFB40046.1| response regulator receiver sensor signal transduction histidine kinase [Clostridium thermocellum JW20] Length = 363 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D ++ + ++ S + +G AL+L Q KPD+I++DI + E+ G E+ Sbjct: 12 ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQKPDLILLDIYMPEMDGFEL 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK +L+ IPVI +T+F+ + + + G + Y+ KP + S + +K ++ Sbjct: 72 CRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHL 127 >gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032] gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032] Length = 229 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ + G++ +G AL R ++PD++++D+ L +S Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + I+ +S +P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GIDVARAIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 234 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D ++ R +++SGY +G+E E + +PD+I+ D+ + E++ Sbjct: 1 MAKRILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKADQPDLIVTDLAMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ ++ P+I ++ + G + Y++KP S+ + I+ + Sbjct: 61 GLELTQAVRRM---ATTPIIVLSVRDTDTMKITALDEGADDYLTKPFSMPELLARIRVQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 237 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D K+ + + G+ +G A+ R+ +P +I++D+ L G+E Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGME 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ ++A + D+ G + Y+ KP + +K + Sbjct: 73 VCRRIR---TFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128 >gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6] Length = 762 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 73/121 (60%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I EDN N + +++ Y NG EA+EL ++ +PD+I+MD+ + + G+ Sbjct: 628 KKLLIAEDNRTNQLVVTRMLKNDNYEITIAGNGAEAVELFKKDRPDLILMDMMMPVMDGV 687 Query: 63 EITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T +I+E + P+IA+TA A++ +E+ G + ++SKPI+ +ET++K+ Sbjct: 688 EATLKIRELEAVAHEAGCPIIALTANALEAHKEKCLAAGMDDFLSKPINKKSLLETLEKW 747 Query: 120 I 120 + Sbjct: 748 V 748 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 17/126 (13%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEIS 60 +IV+D ELN + + + + G Q + ALEL + D I+D Q+ Sbjct: 486 LIVDDLELNRSILSERLTSWGVQCFQAESANRALELLADLRLEKCHLDFAILDYQMPVTD 545 Query: 61 GLEITKQIKEDSELQEIPVIAVT------AFAMKGDEERIRKGGCEAYISKPISLSIFME 114 G E+ K I + E ++P++ ++ A +++ E KP+ S + Sbjct: 546 GRELAKCIHKIPEFAQVPIVMLSSVEQAMARSVREVENICEIA------LKPLRASHLRQ 599 Query: 115 TIKKYI 120 I + + Sbjct: 600 VINRVL 605 >gi|317483795|ref|ZP_07942735.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924898|gb|EFV46044.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 236 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ +L + +G E D+II+DI L GL Sbjct: 6 RLLVVDDDADIRELLSAYLARYDMTVETAADGAGLFEKLDHAHFDLIILDIMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ IPVI +T+ D + G + Y+ KP + I+ + A Sbjct: 66 LCRRLR---GTSAIPVIFLTSLDSSTDRVVGLELGADDYVVKPFDPRELLARIRTVLRRA 122 >gi|310821972|ref|YP_003954330.1| response regulator receiver protein [Stigmatella aurantiaca DW4/3-1] gi|309395044|gb|ADO72503.1| Response regulator receiver protein [Stigmatella aurantiaca DW4/3-1] Length = 124 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ + + R L++ Y L +GMEA+ A +PD+I+MD+ + + G Sbjct: 5 KKILLVDDSPTVLLMERLLLQGEPYALLSASSGMEAVRAALAQQPDLILMDVVMPGMDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++ D + P+I VT A ER + GC Y++KP + + I+ ++G Sbjct: 65 EACRILRSDEATRTTPIILVTTKASLEHVERGYESGCSDYVTKPFNGNELRAKIENFLGR 124 >gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 227 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+E + + G+ +G E L PDV+++D L + G Sbjct: 1 MFRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ E +P++ VTA D + G + Y+ KP+ + I+ + Sbjct: 61 LEVCRRLR-TPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 266 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED + +E +G+ +G LA + D++I+D+ L +G Sbjct: 39 MQRILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANG 98 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ + IP+I +TA D+ + + G + Y+ KP M I+ ++ Sbjct: 99 YEVCEVIRRKNNA--IPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLK 156 Query: 122 EA 123 A Sbjct: 157 RA 158 >gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 223 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EAL + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E + ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKN--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 234 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D + + L + G++ + +G AL LAR KPD++++D+ L + G+ Sbjct: 4 ATILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +Q+ D+ + V+ +TA A + D+ G + Y++KP S + +K + Sbjct: 64 EVCRQLHRDT---SVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120 >gi|182412191|ref|YP_001817257.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177839405|gb|ACB73657.1| multi-sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 503 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 66/119 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I +D+ LN +++ GY NG+EA E AR+ +PD++++D+ + E++ Sbjct: 1 MNARILIADDDPLNQITLEAILQRDGYELHFAHNGLEACEQARRLRPDLMLLDVMMPEVN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++++ D+E+ +P+I +TA + + G + ++SKP ++ Sbjct: 61 GFEVCRRVRRDAEIGRMPIILITALLDEKSRLEGLRAGADDFLSKPCPSEELRARVRTV 119 >gi|159030410|emb|CAO91308.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 378 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ + R ++ Y +G E L+ A Q KP +II D + I G Sbjct: 1 MVRILVIDDDGVIQTFLRRALQKE-YEVFVASDGEEGLKQAGQLKPAMIICDWMMPGIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 LE+ +QIK + +L I +T+ D + G + ++ KPI ++ ++ Sbjct: 60 LEVCRQIKLNPQLSTTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEINELKARVRA 116 >gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 373 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++++ED+ + R + +GY+ + M L AR+ PD+I++D+ L + G Sbjct: 4 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGG 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++++S L P+I +TA ++ R+ G + Y+ KP + +K + + Sbjct: 64 DVVQRLRKNSAL---PIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 120 >gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ L + + Y +G A +L ++ D+I++DI L ++ G+ Sbjct: 2 KILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ S + +P++ +T D+ G + Y+ KP + ++ + Sbjct: 62 LCKKIR--SSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ ++L + L+ G + + + PD++I+DI++ +SG+E Sbjct: 383 KILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGIE 442 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+ + +E+P++ +T + ++ G + ++SKPI +S + I + Sbjct: 443 LCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ +D+ + + ++L+ GY L +G +A+ A PDVI++D+ + ++G E Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 65 TKQIKEDSELQEIPVIAVTAFAM------KGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +K+ S+ ++IP++ + + + ++ ++SKP+ + + +++K Sbjct: 1136 MAGLKKCSDTKDIPIVICSVYKSSQNNPNRQEDTNAESVKFADWLSKPVEETDLLNSLRK 1195 Query: 119 YIGE 122 + E Sbjct: 1196 VVSE 1199 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I+ED+ L L + + G EA+ L+++ PD++I+D+ L E G Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP-ISLSIFMETIKKYIGE 122 + +K+ +L IPV+ +A + E K G + +K +++ F + + + Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTIQEFEQRVMDLLQR 1324 >gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor [Haliangium ochraceum DSM 14365] Length = 1131 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 66/119 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D++ + R+++E +GY +G AL ++++PD++++DI + E+ G + Sbjct: 799 RVLVVDDDDAIRAICREVLENAGYAVRDVPDGYAALTETKRYRPDLLLLDIMMPEMDGFQ 858 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K D P+I ++A D+ R + G E Y++KP + + + K + Sbjct: 859 TAERLKSDPSTSMTPIIFLSAKGATADKVRAFRSGAEDYVTKPFDAAELVARVSKTVER 917 Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV + + ++ +G+ L + EAL L R+ +P + ++ + GL Sbjct: 675 TVLIVAEQWRASYALKGILLMAGFQVLIAEDADEALALTREEQPSLAVIYTDTPDRDGLA 734 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + + D + ++ V+ ++ + + + ++ P++ F+E + I Sbjct: 735 LVEIFRHDPDTRKTAVLVIS--GTEDLRDAASRANANEFLHTPLAPGAFVEACTRLI 789 >gi|218438405|ref|YP_002376734.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171133|gb|ACK69866.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 361 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+DN N+ L + +E GY +G+ AL + PD+I++D+ + I+G E+ Sbjct: 12 ILAVDDNPDNLFLIKLALEQEGYRVHLVEDGLTALAQIQYAPPDLILLDVMMPGINGYEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+++ + IP++ +TA+ + + G + +I KP+ + ++ + Sbjct: 72 TRRIRQNPNIPFIPILLITAY-EEPSLVQGLDVGADEFIRKPVQIDELQARVRSLLR 127 >gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] Length = 229 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L + G Sbjct: 1 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I++++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 FQVCKTIRKEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472] gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 1480 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +V++VED+ +N ++ + L++ G A NG A+E + +I+MD+Q+ E+ G Sbjct: 1147 RVLLVEDDAINREVAQALLQDVGLEADMAENGKIAVERVQAAPARYALILMDVQMPEMDG 1206 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE T++I+ + IP++A+TA A D R+ G +++KP+ +++++ Sbjct: 1207 LEATRRIRALDAGENIPIMAMTANAFAEDRSACREAGMNDFVAKPVDPDQLFAALRRWL 1265 >gi|23016209|ref|ZP_00055967.1| COG3437: Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magnetotacticum MS-1] Length = 379 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 V++V+D N+KL L++ Y +G++AL +A+ PD+I++DI + E+ G Sbjct: 8 TVLVVDDTPDNLKLMSGLLKDF-YRVKIANSGVKALAIAQSETPPDLILLDIMMPEMDGY 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D +EIPVI +TA A DEE + G YI+KPIS I M ++ ++ Sbjct: 67 EVCRRLKSDPATREIPVIFLTAKAETQDEEMGLRVGAVDYITKPISPPIVMARVETHL 124 >gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 228 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VED++ +L + G+ + NG + L LA D++++DI L +IS Sbjct: 1 MQNRVLLVEDDDELRELLARYLTNQGFTIREAANGRDGLALALGQDCDIVVLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ ++ +PV+ +TA + D + G + YI KP + + ++ + Sbjct: 61 GLEVLRELRAET---HLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|307133596|dbj|BAJ19085.1| GppX [Tannerella forsythia] Length = 710 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN L Y NG E +E A PD+II D+ + + GLE Sbjct: 461 RLLVIEDNHDIAAYIGSLFADR-YAVSYAANGKEGMEKALDLVPDLIITDLMMPGMDGLE 519 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + IP+I VTA + + + + G +AYISKP + ++K + Sbjct: 520 VCRQVRGNEIINHIPIIVVTAKITEEERIKGLEAGADAYISKPFNADELRTRVEKLLDR 578 >gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22] gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces scabiei 87.22] Length = 241 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 17 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDG 76 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 77 LEVARRLRAEGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 134 Query: 122 E 122 Sbjct: 135 R 135 >gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 809 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 3/117 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED N L+E G+ + +G +ALEL +QH+ D I+MDI++ + GLE Sbjct: 679 RILVAEDEPTNQLFAGRLLEYLGHKVMIAEDGSQALELLQQHEFDCILMDIRMPFMDGLE 738 Query: 64 ITKQI---KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + I +E +++P+IA+TA AM+GD E + G Y++KP+ + ++ Sbjct: 739 AARAIRTSRELGARRDVPIIAMTAHAMEGDREVFFQAGMNGYLAKPVQKEDLEKVLQ 795 >gi|124009577|ref|ZP_01694251.1| adenylate cyclase [Microscilla marina ATCC 23134] gi|123984816|gb|EAY24791.1| adenylate cyclase [Microscilla marina ATCC 23134] Length = 362 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSG--YIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M ++IV+D N+K+ R+ + T+ + LQ NG +A ++A++ PD++IMD + Sbjct: 1 MKATILIVDDEVTNLKILREYLTTADQEFRILQATNGKQAFDIAQKADPDLVIMDWMMPV 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG++ K IK Q IPVI TA D + + G Y+ KPI + + ++ Sbjct: 61 MSGIDALKNIKTTESTQNIPVIMATAKTSAQDLKEALEAGAMDYVRKPIDKTELLARVRS 120 Query: 119 YI 120 I Sbjct: 121 AI 122 >gi|15643234|ref|NP_228278.1| response regulator [Thermotoga maritima MSB8] gi|251836870|pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|251836872|pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|251836873|pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex Reveals Insights Into Two-Component Signaling And A Novel Cis-Autophosphorylation Mechanism gi|4980976|gb|AAD35552.1|AE001724_10 response regulator [Thermotoga maritima MSB8] Length = 122 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D+ + K+ ++ GY ++ NG ALE + PD+I++DI + + Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E E + IPVI +TA + DE G + KP S S F+E +K + Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 Query: 121 GE 122 E Sbjct: 121 NE 122 >gi|300866840|ref|ZP_07111517.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335150|emb|CBN56677.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1017 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +N L L+E+ G+ NG+EA+ + P +I MDI++ E+ G E Sbjct: 813 RILVAEDVLVNRHLLVTLLESVGFEVCAVTNGIEAIACWQDWHPHLIFMDIEMPEMDGYE 872 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+QI+ + ++A+TA+A + D + GC+ YI+KP + +I + I Y+G Sbjct: 873 ATRQIRARGVQDNVAIVALTAYAFEEDRTASLQAGCDDYIAKPFTETILFDKIAHYLG 930 >gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 237 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ ED+ + GY +G+EAL A + PDV+++D+ + I GL++ Sbjct: 2 LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVMMPGIDGLQVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + + P++ +TA D G + Y+ KP + ++ + Sbjct: 62 RVLRAEGD--RTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116 >gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 225 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E +++ G+ +G + L ++ D++++D+ + + G Sbjct: 1 MSRILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGADLVLLDLMMPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K +++ S ++PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 IEVCKALRQRS---DVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 236 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+V+D +L + +GY +G EA+E+ + KPD+II+D+ L +I G +T Sbjct: 1 MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTVT 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 61 RRIRQEGITA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 115 >gi|89094274|ref|ZP_01167216.1| chemotaxis response regulator [Oceanospirillum sp. MED92] gi|89081529|gb|EAR60759.1| chemotaxis response regulator [Oceanospirillum sp. MED92] Length = 120 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 61/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ + ++ GY ++ NG EAL A+ + D+++ D+ + + G Sbjct: 1 MASILVVDDSASLRNMVTFTLKQEGYQVVEAGNGQEALAKAQGARFDLVLTDVNMPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++ + P++ +T + ++R + G ++ KP + + TIK+ + Sbjct: 61 ITLCAELRKLPAFKFTPILVLTTESSADMKQRGKAAGATGWLVKPFNPEKLISTIKRVVR 120 >gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121] gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121] Length = 239 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ L + + G G + + DVI++D+ + GL Sbjct: 6 RVLVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRASFDVIVLDLMMPGEDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+E S IPVI +TA + D + G + YI+KP S + IK + + Sbjct: 66 LCRNIREKSA---IPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKRS 122 >gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG] Length = 1307 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E +G L NG E +E+ QH V++MDI + E+ G Sbjct: 1187 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1246 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + ++K++ Sbjct: 1247 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLR 1305 >gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 227 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++++D+ + + ++ +E G+ +G E A + D+I++D+ + +++G Sbjct: 1 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + I+ + + PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 61 IDALRAIRAE---KNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|153869727|ref|ZP_01999263.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073808|gb|EDN70738.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 207 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEI 59 ++IV+D+ ++ + + + + L R+G EAL+ KPD+I++D+ + I Sbjct: 4 SPTILIVDDSAVSTTVLSHFLTLNDFKVLVERSGDEALQFMNSASSKPDLILLDVMMPGI 63 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG E K++K++++ QEIP+I +TA + GD+ + + G Y++KP + I + Sbjct: 64 SGFETCKELKQNTKTQEIPIIFMTALSDTGDKIKAFELGAVDYVTKPFQQEEVLARINTH 123 Query: 120 I 120 + Sbjct: 124 L 124 >gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED+E +L RD +E +G+ ++G + L+LA + D+I++D+ L G Sbjct: 1 MKKILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+ ++EIP++ VTA + + G + YI KP S S + + +I Sbjct: 61 FKVCQEIRA---VKEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHIS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] Length = 1521 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++IVEDN N ++ R+L+E G +G EA+E+ H D+++MD+Q+ + G Sbjct: 1172 RLLIVEDNLNNQQIARELLEDEGADVRIANHGKEAIEILEHHPSLFDLVLMDLQMPVMDG 1231 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK I++ L+ +P+IA+TA AM D + G +I KP L+ ++ I+KY Sbjct: 1232 YNATKYIRKSLGLKNLPIIAMTANAMASDRDACLAAGMNDHIGKPFDLNNLIQVIRKY 1289 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 8/121 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DN L + + E+ + +G EAL+L RQ + +D Q+ Sbjct: 1024 RVLVVDDNPTACDLIKQMGESLKWTVDVATSGNEALQLMRQQHDSGITYGALFIDWQMPG 1083 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115 + G + +K ++E + P ++ +TA + +R + + Y+ KPI+ S+ +++ Sbjct: 1084 LDGWQTSKYVRELMPVDNGPMIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 1143 Query: 116 I 116 + Sbjct: 1144 V 1144 >gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 231 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ ED+ + D ++ GY ++G AL A D+I++D+ L S Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+++E +P++ +TA D+ K G + Y++KP + + I+ + Sbjct: 61 GFDVCKKLRESEIG--VPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 240 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D E ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 14 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 74 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 >gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1197 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+DN +++ SGY RNG E ++ ++ P +I+ D+ + +SGL Sbjct: 832 ARILVVDDNSDLRAYVGSILKQSGYQVWTARNGEEGWQMTQKCHPQLIVTDLMMPVMSGL 891 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ I+ + + IP+I +TA A + + G +AY+SKP + + ++ + Sbjct: 892 DMIHTIRGSQDFKGIPIILLTAKADEASRIEGTEKGADAYLSKPFNDRELLAEVRNLL 949 Score = 70.2 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 32 TRNGMEALELAR-QHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGD 90 NG ALE+ + VII D ++ +SG E ++ +I I +T + D Sbjct: 3 ADNGPAALEILEAEGDVAVIISDQRMPLMSGTEFLSI--TAAQYPDIIRIILTGYTDVED 60 Query: 91 EERIRKGG-CEAYISKPISLSIFMETIKKYI 120 G Y++KP + +++ + Sbjct: 61 LVEAINAGKVFKYVTKPWNAEELKSVVRQAM 91 >gi|86741974|ref|YP_482374.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86568836|gb|ABD12645.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 272 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ VED ++ R + G+ +G AL A PD++I+D+ L ++ G Sbjct: 23 MTRLLFVEDEPQLLRAMRITLRARGFEVRTALDGRHALSEAASCPPDLVILDLGLPDMDG 82 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++ +P+I ++ A D+ G + Y++KP S+ + ++ Sbjct: 83 VEVIQGLRA---WTGVPIIVLSGRASGHDKVAALDAGADDYVTKPFSIDELLARVRAVTR 139 Query: 122 EA 123 A Sbjct: 140 RA 141 >gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 282 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 6 MIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++V+D + + +E SG + N EA + + H P ++I DI + ++ G + Sbjct: 59 LLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYLQHHLPALVISDIMMPQVDGYQF 118 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ED+ Q +PV+ +TA M GD + + GC+A++SKP ++ + Sbjct: 119 LQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLAR 176 >gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 236 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ KL + +E + Y + +G EAL L D++++D+ L I G E+ Sbjct: 6 ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLPGIDGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ +E+P++ +TA + D+ + G + Y+ KP S I+ + Sbjct: 66 CRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123 >gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 233 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ GY NG E A Q D++I+D L +GL Sbjct: 2 KILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNYDLLILDWMLPGKTGLA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ SE + PV+ +TA D + G + Y+ KP L + ++ + Sbjct: 62 ICQKLR--SEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 283 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A+ AR +PD +++D+ L ++ GL Sbjct: 57 RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 116 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 117 VLGRLRR--EYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 174 >gi|254712298|ref|ZP_05174109.1| Probable transcriptional regulator ycf27 [Brucella ceti M644/93/1] gi|254715370|ref|ZP_05177181.1| Probable transcriptional regulator ycf27 [Brucella ceti M13/05/1] gi|261217099|ref|ZP_05931380.1| two-component system response regulator [Brucella ceti M13/05/1] gi|261319969|ref|ZP_05959166.1| two component system response regulator [Brucella ceti M644/93/1] gi|260922188|gb|EEX88756.1| two-component system response regulator [Brucella ceti M13/05/1] gi|261292659|gb|EEX96155.1| two component system response regulator [Brucella ceti M644/93/1] Length = 238 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L + ++ G NG E L++ + D++I+D+ L SG+ Sbjct: 5 AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEILDVLSRTPIDLVILDVMLPGKSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ +P+I +TA A D+ + G + YI+KP + I+ + Sbjct: 65 EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121 >gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 227 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +D + + +E GY +G AL D++I+D+ + E+ GL Sbjct: 4 ARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPELDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E ++P+I +++ + + D + G + Y++KP S +K + Sbjct: 64 NLCRKLRERG---DVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120 >gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +D L R +E Y ++ +G AL+L R +P + I+DI + +I Sbjct: 1 MDYKILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIMMPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QI+++S IPVI ++A ++ G + Y++KP + + + I Sbjct: 61 GYHVLQQIRKES---NIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|153869355|ref|ZP_01998987.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152074121|gb|EDN71011.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 1314 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N ++E + NG EAL+L +H+ +++MDI + E+ G Sbjct: 1194 KKVLIVDDDARNTFALAIVLEEKQMEVIAGNNGFEALKLLDEHQDIAIVLMDIMMPEMDG 1253 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +QI+ +++P+IA+TA AMK D+ + + G Y+SKP+ + ++ ++ Sbjct: 1254 YEAMRQIRARDGFRKLPIIALTAKAMKSDKAKCIEAGANDYLSKPVDTDKLISLMRVWL 1312 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ +L +L + L +G+ L+LA Q+ P II+D+ L + G ++ Sbjct: 929 LIVEDDPKFARLMVELAHEQQFKCLVGEDGLTGLQLAEQYNPHAIILDVGLPHLDGWKVM 988 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +Q+K + + + IPV ++AF +K G Y+ KP+S+ ET +K Sbjct: 989 EQLKNNPDTRHIPVHFISAFDQS---LAAKKMGAIGYLLKPVSMEQLSETFQKI 1039 Score = 34.7 bits (80), Expect = 4.5, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++V DNE++ + +++ + AL+ ++ D II+D+++++ +G Sbjct: 1048 KSVLVVVDNEVHQQQILNIVSGDNIQTTLAATTIAALQNLKETTFDCIILDLEIEQRAGC 1107 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-SKPI-SLSIFMETI 116 ++ +Q++ + VI A EE+ C + K + S + + Sbjct: 1108 QLLEQMQTIEGFCQTQVIVY-AKRELTSEEKALLMQCADELPVKSVSSPERLLNEV 1162 >gi|126658584|ref|ZP_01729731.1| response regulator receiver domain protein (CheY-like) [Cyanothece sp. CCY0110] gi|126620171|gb|EAZ90893.1| response regulator receiver domain protein (CheY-like) [Cyanothece sp. CCY0110] Length = 335 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++++TSGY +G +ALE PD+I++D+ + +++G+E+ Sbjct: 14 ILIVDDIPKNLQLLIEILDTSGYGTTFAVSGEQALERVEVTDPDLILLDLMMPKMNGIEV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + + ++IP+I +TA + G Y++KP + IK ++ Sbjct: 74 CKRLKNNPKTEQIPIIFLTAATETNYLISAFEAGAVDYVTKPFKTPELLARIKTHL 129 >gi|156743077|ref|YP_001433206.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] gi|156234405|gb|ABU59188.1| response regulator receiver protein [Roseiflexus castenholzii DSM 13941] Length = 200 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M + +++V+D N+ L + +GY L G AL+ A +PD+I++D+ + Sbjct: 1 MSQSPDTILVVDDTPANLALLFTGLRRAGYKVLINERGDVALQTAINVQPDLIVLDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G E +++K D ++IPVI +TA +E + G YI+KPI++ + + I Sbjct: 61 GMDGFETCRRLKADPRTKDIPVILMTALTDAIEEVTGLRAGAVDYITKPINVDVVLARIN 120 Query: 118 KYI 120 ++ Sbjct: 121 THL 123 >gi|94263702|ref|ZP_01287510.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455901|gb|EAT06060.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 407 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 +++V+D +N+ + + +++ + L NG +AL+LA+ +PD+I++DI + + G Sbjct: 8 ATILVVDDVAINIMIIKGALKSE-WNLLTAENGKQALDLAQGTPRPDLILLDIMMPGMDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K D E + IPVI VTA EE+ + G YISKPI I ++ +I Sbjct: 67 HEVCRQLKADPETRGIPVIFVTAMGDAVSEEQGLQLGAIDYISKPIKPEILRVRVRNHI 125 >gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 226 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 72/119 (60%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D E ++L + +E SG+ + + +EL + KPD++++D L +ISG++ Sbjct: 2 KILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGID 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+I++D ++ ++PVI +TA M+ D+ + G + YI+KP S+ M I + Sbjct: 62 ILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120 >gi|302340470|ref|YP_003805676.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301637655|gb|ADK83082.1| response regulator receiver sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 365 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D N++L +++ + +G AL +AR+ D+I++DI + ++ G Sbjct: 9 RILIVDDVYRNIQLAGAILKQENFHFSFATDGNTALRVAREGGVDLILLDIMMPDLDGFS 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KE+ E +IPVI +TA R G Y++KP + + ++ ++ Sbjct: 69 VCSLLKENPETADIPVIFLTAKNDTESIVRGFDLGAVDYLTKPFQAAELLARVRTHV 125 >gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 413 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + Y +G E A D+I++D+ L ++ G+ Sbjct: 2 KVLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ P++ +T+ + G + Y+ KP I+ + Sbjct: 62 LCRQLRSRHTT--TPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRR 118 >gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 230 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED+ ++ + G+ + +G E + L +Q D+I++DI L +++G Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E S IPV+ ++A D+ G + YI+KP S+ +K I Sbjct: 61 MDFLKIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|294507366|ref|YP_003571424.1| Response regulator receiver containing Stage II sporulation protein E (SpoII) domain [Salinibacter ruber M8] gi|294343694|emb|CBH24472.1| Response regulator receiver containing Stage II sporulation protein E (SpoII) domain [Salinibacter ruber M8] Length = 371 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ +L + + Y NG EAL+ + PD+II DI + ++ G Sbjct: 5 TILVVEDDSTVRELLKYRLGKH-YEVYTATNGEEALDQIEETIPDLIISDIMMPKMDGFA 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ D + IP I +TA A + ++ + G + YI+KP + + +++ + Sbjct: 64 LQSALQTDKNTRVIPFIFLTARADEEARQQGERKGVDDYITKPFDMETLLSRVERLLER 122 >gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D E ++ + NG EAL++ + +I+MDI + ++ Sbjct: 1 MTKYQVLVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLEREDIQLILMDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ T QI++ + IP+I ++A + D+ G + Y++KP + + +K Sbjct: 61 DGMTATFQIRQK---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM 17393] Length = 1342 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE L L Y + ++G E L+ ++ +PD+++ DI + ++SG+E Sbjct: 1093 KILIVEDNEELRGLLVRLFSKV-YSVCEAQDGEEGLDKTKEIQPDIVLSDIMMPKMSGIE 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK + E IPVI +TA + + K G + Y++KP ++ + Sbjct: 1152 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1208 >gi|189464788|ref|ZP_03013573.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM 17393] gi|189437062|gb|EDV06047.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM 17393] Length = 1288 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+DN+ + E Y L+ NG EA EL ++ P++ I D+ + ++ G Sbjct: 1041 KSILIVDDNKDLRNFLKCSFENQYY-ILEAGNGNEAWELLQKESPELTISDVMMPDMDGF 1099 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K IK E IPVI +T+ K D+ G E YI+KP +S+ + IK + Sbjct: 1100 ELCKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMR 1158 >gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99] gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99] Length = 241 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP+I +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQGNT--IPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 230 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D L + +G+ NG +A+ + +PD+II+D+ L +++G Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK+++ P++ +TA D+ G + Y++KP SL + IK + Sbjct: 66 VTKRLRAAGYTA--PILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRR 122 >gi|29350071|ref|NP_813574.1| two-component system sensor histidine kinase/response [Bacteroides thetaiotaomicron VPI-5482] gi|298384392|ref|ZP_06993952.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_14] gi|29341983|gb|AAO79768.1| two-component system sensor histidine kinase/response [Bacteroides thetaiotaomicron VPI-5482] gi|298262671|gb|EFI05535.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_14] Length = 1353 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + + + L+ NG EALE + ++ DVI+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRRYLSNGLADL-FNTLEAGNGEEALEKLKDNEVDVIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1353 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ +++ GY A NG+E LE +Q DVI+MD+Q+ ++ GLE Sbjct: 1205 RILLAEDNAVNQKVALHILKRMGYRADVAANGLEVLEALQQRPYDVILMDVQMPKMDGLE 1264 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T++I + P +IA+TA A+ GD ER G + YISKPI + + + Sbjct: 1265 TTERICAQWPPSQRPWIIAMTANALAGDRERCFAAGMDDYISKPIKIEALAAALNR 1320 Score = 80.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++++DN + + L+ G + + + LE A D+ ++D+ + +++GL Sbjct: 1066 KRVLVIDDNAASRENLCTLLHNWGMVPIGYSDPRLVLEAA--PPWDLAVIDLNMPQMTGL 1123 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ ++++ + + P+I +T + R ++ A++ KPI +T+ + + Sbjct: 1124 QLAERLQSEPNFNQQPMILLTPLSWLETASR-KEL-ITAHVPKPIRPLTLRQTLIRTL 1179 >gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ +G A+ AR+ +PD +++D+ L ++ GLE Sbjct: 21 RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGLE 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ D ++PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 81 VLRRMRAD--TPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRS 138 >gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] Length = 232 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALE+ ++ D+II DI + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + + P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] Length = 225 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ +++ + +G+ L+ ++G +ALEL + D+II+D+ L ++ G + Sbjct: 2 RVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELFPRA--DLIILDLMLPKLDGFK 59 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ E E+P++ +TA + + + + G + Y+ KP S + +K + A Sbjct: 60 VLEEVRR--ERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRA 117 >gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis serovar chinensis CT-43] Length = 230 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+E + + ++ YI +G A + D+I++D+ L ++ G+ Sbjct: 2 KILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGIA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + P++ +TA D + G + Y+ KP L I+ + Sbjct: 62 LCQQLRANG--CKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRR 118 >gi|146341430|ref|YP_001206478.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. ORS278] gi|146194236|emb|CAL78258.1| putative response regulator in two-component regulatory system (CheY-like protein) [Bradyrhizobium sp. ORS278] Length = 121 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 79/121 (65%), Positives = 104/121 (85%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLFRDL+E GY T +G+EAL++ R+ +PD+I+MDIQL ++S Sbjct: 1 MGKTVLIVEDNELNMKLFRDLLEAHGYQTSGTSSGVEALDIVRRTRPDLILMDIQLPQVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IK+D +L+ IPV+AVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ET++++I Sbjct: 61 GLEVTKWIKDDPDLRAIPVVAVTAFAMKGDEERIREGGCEAYLSKPISVGKFIETVRRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|146281299|ref|YP_001171452.1| DNA-binding response regulator ColR [Pseudomonas stutzeri A1501] gi|145569504|gb|ABP78610.1| DNA-binding response regulator ColR [Pseudomonas stutzeri A1501] gi|327479458|gb|AEA82768.1| DNA-binding response regulator ColR [Pseudomonas stutzeri DSM 4166] Length = 227 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN + D +E GY+ ++G+ L LA + D+I++DI L I G + Sbjct: 2 RILVIEDNRDILANVLDYLELKGYLVDCAQDGLSGLHLAATQEYDLIVLDIMLPGIDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K+++ED+ ++ P+I +TA D + + G + Y+ KP +LS + I+ + Sbjct: 62 VCKRLREDAR-RDTPIIMLTARDALPDRIKGLEAGADDYLIKPFALSELVARIEAVL 117 >gi|118594849|ref|ZP_01552196.1| Response regulator receiver (CheY) modulated Serine phosphatase [Methylophilales bacterium HTCC2181] gi|118440627|gb|EAV47254.1| Response regulator receiver (CheY) modulated Serine phosphatase [Methylophilales bacterium HTCC2181] Length = 387 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +++V+D N++L L++ Y +G + L++A PD+I++DI + E+ G Sbjct: 9 TILVVDDAPANLQLMSGLLQ-ENYRVKAATSGEKGLKIALTSPQPDLILLDIMMPEMDGY 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K++K D + IP+I +TA + DE G YI KP+S I M IK +I Sbjct: 68 EVCKRLKADERTKGIPIIFLTAKSEAEDEALGLSCGAVDYIIKPVSPPIAMARIKTHI 125 >gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp] gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp] Length = 245 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L + GY N + L + +++++D+ L GL Sbjct: 13 KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGLS 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E + +IP+I +TA + + + G + Y++KP + + IK + Sbjct: 73 ACRRLRESNN--QIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRR 129 >gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 248 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 84 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 >gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED +L RD +E SGY + G + L + + ++II+D+ L I Sbjct: 1 MKKRILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLMLPNID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++I+E + IP++ V+A D+ R G + YI+KP S S + + +I Sbjct: 61 GFEICRKIRES---KNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHI 117 Query: 121 GE 122 Sbjct: 118 SR 119 >gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 225 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D ++ R + + + +G ALE A H PD++++D+ L ++ G Sbjct: 1 MSRVLLVDDEPQLLRALRINLAARHFDVVTAEDGSGALEAAATHPPDLVVLDLGLPDLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ +P+I ++ D+ G + Y++KP SL I+ Sbjct: 61 VEVIRRLR---VWTAVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 940 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N KL L+ G +G EA++ + + +I+MD QL +++G E Sbjct: 812 VLVVEDNPVNQKLVTALLRKMGLSVRLASSGFEAIDALGEEEYALILMDCQLPDLNGFET 871 Query: 65 TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ E Q IP+IA+TA +M+GD E+ + G + Y+SKPI + +++ Sbjct: 872 TQVIRDSEAETGQHIPIIAMTALSMQGDREKCLQAGMDDYVSKPIDRKQLTAVLARWL 929 >gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] Length = 268 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ GYI T NG ELA+ D++I+D L E +GLE Sbjct: 34 KILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGLE 93 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + IPV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 94 ICQELRRQG--KNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRS 151 >gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L +D +E SG+ G L+ A + D+ I+D+ L E+ G Sbjct: 1 MSKILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++I+ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICREIRNQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|326796406|ref|YP_004314226.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326547170|gb|ADZ92390.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 237 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I++D+ L ++L+ + NG E L+ D++++D+ + +++G Sbjct: 1 MQHILIIDDDIELTDLLKELLSFENFTISVAHNGEEGLDRIDD-TIDMVLLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++E S ++PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 IDTLRRLRESS---DLPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILR 116 Query: 122 EA 123 A Sbjct: 117 RA 118 >gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2] gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2] Length = 230 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++++ED+ ++ + G+ + +G E + L +Q D I++DI L +++G Sbjct: 1 MQHILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E S+ +PV+ ++A D+ G + YI+KP S+ IK I Sbjct: 61 MDFLKMIREQSK---VPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 246 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED + G+ A +G A++ A + PD+IIMD+ L + G+ Sbjct: 19 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGI 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I IPV+ +TA + D G + Y+SKP S+ + ++ + Sbjct: 79 EATKRI---EAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 135 >gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 229 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ + G++ +G AL R ++PD++++D+ L +S Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + I+ +S +P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GIDVARAIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|256419739|ref|YP_003120392.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034647|gb|ACU58191.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 229 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+++ED ++ +D +E G+ L +G E L L ++H+PDV+++DI + + G Sbjct: 1 MSKVLLIEDEWQLGQIVKDSLEMRGFEMLYAADGKEGLRLYQEHQPDVVVLDIMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T +I++ + P+I +TA + D + + G Y+ KP S+ + IK + Sbjct: 61 FTVTTEIRKLDKT--TPIIFLTAKSQTTDVVKGFELGGNDYLKKPFSMDELIVRIKALLE 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 1170 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++V+D+ N+ +E G + RNG+EA++ + D+++MDI + E+ G Sbjct: 1046 RTILVVDDDVRNVFALTSALEQKGALVEIARNGLEAIDKLQHDAGIDLVLMDIMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++D+ ++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1106 FTAMQEIRKDARFAKLPIIAVTAKAMKDDQDRCLRAGANDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 95.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 3/111 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED ++ RDL Y L ++N + + A Q+KPD I++D++L + SGL + Sbjct: 780 VLVIEDEPQFARILRDLAHELEYSCLLSQNADDGFDTAVQYKPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 +++KE+S + IPV V+ ++ +E + G Y KP + + Sbjct: 840 LERLKENSATRHIPVHVVS---VEDRKEAALQMGAVGYAMKPTTREELKDV 887 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 46/93 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L + LIE G +ALE R D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRESMSRLIEDVDIEITAVEFGAQALEQLRDTVFDCMIIDLKLPDMDGS 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95 E+ +++ ++ PVI T + DEE Sbjct: 960 ELLERMAKEDICSFPPVIVYTGRNLTRDEEAAL 992 >gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 1631 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN R ++ +G+ +GMEAL AR +P++++ D+ + ++ G Sbjct: 644 KLLVVDDNADLRDYMRRILTAAGHQVYVAADGMEALAAARALQPELVVSDVMMPKLDGFG 703 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----K 118 + + ++ D L+E+PV+ ++A A + + + G + Y+ KP + + + Sbjct: 704 LLRALRADDGLREMPVLLLSARAGEEAKVDGLESGADDYLIKPFAARELLARVAGNLQLA 763 Query: 119 YIGE 122 + Sbjct: 764 RLRR 767 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61 +++VED+E +++ GY L+ ++ AL + P D++ D+ + + Sbjct: 1361 TILVVEDDEDVRTTVVEMLSALGYRVLKAKDAQSALAIVESGVPIDLLFTDVVMPGSLRS 1420 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++ +E I V+ + + G +SKP S I+ + Sbjct: 1421 TELARKARE--RQPGIAVLFTSGYTDNAIVHAGRLDEGV-ELLSKPYSREALARKIEHAL 1477 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ VED+EL +L+ T G + ++AL+L + DV++ DI L SG++ Sbjct: 1516 RILFVEDDELVRVSTAELLRTFGVEVAEASGAVQALDLLHEKSFDVLLTDIGLAGASGID 1575 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKG-GCEAYISKPISLSIFMETIK 117 + I + VI VT E+ + G + KP + ++ Sbjct: 1576 LA--IDATGRESRLRVIFVTGSDAALSPEQQLRLPGASQ-LRKPYDPLDLVNALR 1627 >gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440] Length = 252 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ NGM AL ARQ +PD +++D+ L ++ G Sbjct: 27 RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFA 86 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + +PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 87 VLRRLREVAPT--VPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 144 >gi|304320055|ref|YP_003853698.1| hypothetical protein PB2503_02397 [Parvularcula bermudensis HTCC2503] gi|303298958|gb|ADM08557.1| hypothetical protein PB2503_02397 [Parvularcula bermudensis HTCC2503] Length = 130 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 77/118 (65%), Positives = 98/118 (83%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+IVEDNELNMKLF DL+E GY LQ NG EAL+LAR H+PD+I+MDIQL E SGL Sbjct: 12 RTVLIVEDNELNMKLFHDLLEVQGYRVLQAVNGAEALDLARAHRPDLILMDIQLPEKSGL 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++T++IK D EL+ IPVIAVTAFAMK DE RIR+GGCE YI+KPIS+ +F++ +K+Y+ Sbjct: 72 DVTREIKADDELRAIPVIAVTAFAMKSDEARIREGGCEDYIAKPISVPVFLDKVKRYL 129 >gi|304391594|ref|ZP_07373536.1| response regulator [Ahrensia sp. R2A130] gi|303295823|gb|EFL90181.1| response regulator [Ahrensia sp. R2A130] Length = 126 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 88/122 (72%), Positives = 103/122 (84%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKVMIVEDNELNMKLF DL+E GY +QT NG+ AL+LAR+H PD+I+MDIQL E+S Sbjct: 1 MAKKVMIVEDNELNMKLFNDLLEAQGYETIQTSNGLSALDLARKHYPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED L IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+E +K Y+ Sbjct: 61 GLEVTKWLKEDDSLARIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVMRFIELVKTYL 120 Query: 121 GE 122 GE Sbjct: 121 GE 122 >gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ I+ED + + + +E GY +G E L L + D++++DI L + G Sbjct: 1 MQRIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI K+I++ +E+P+I ++A A + D+ + G + Y++KP + M +K + Sbjct: 61 LEICKEIRQ---TKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 730 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN +N ++ R+L+ + G + Q +G EA+E +Q +I+MD+++ + G+ Sbjct: 481 KQVLVVDDNTINREMIRELLSSLGMVISQVSSGEEAIEAVKQQAFSLILMDLRMAGMDGI 540 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK +++ +PVIA++A E + G Y+ KPI ++ I ++ Sbjct: 541 EATKALRKLPNGSHVPVIALSANTSASMAETCTQAGMNDYLPKPIDFRRLIQIIANHLAA 600 Query: 123 A 123 + Sbjct: 601 S 601 >gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24] gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24] gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|256015256|ref|YP_003105265.1| transcriptional regulatory protein OmpR, putative [Brucella microti CCM 4915] gi|255997916|gb|ACU49603.1| transcriptional regulatory protein OmpR, putative [Brucella microti CCM 4915] Length = 238 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L + ++ G NG E L++ + D++I+D+ L SG+ Sbjct: 5 AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ +P+I +TA A D+ + G + YI+KP + I+ + Sbjct: 65 EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121 >gi|239947824|ref|ZP_04699577.1| regulatory component of sensory transduction system [Rickettsia endosymbiont of Ixodes scapularis] gi|239922100|gb|EER22124.1| regulatory component of sensory transduction system [Rickettsia endosymbiont of Ixodes scapularis] Length = 450 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D+I++D+ + E+ G Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 FEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 68.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDLVIISSMLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGD--EERIRKGGCEAYISKPISLSIFMETIKKYI 120 I+ ++ +E+ V+ ++ G + + G Y PI S + I+ + Sbjct: 211 RISVILRGKAEISG--VVIISQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268 Query: 121 GE 122 Sbjct: 269 RR 270 >gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K K+++VED E + GY +G EALE + +I++DI + + Sbjct: 1 MKNFKILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G+E+ ++I++ +P+I +TA + D+ G Y++KP ++ + I+ Y Sbjct: 61 NGIEVCRRIRQ---FSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVY 117 Query: 120 IGE 122 E Sbjct: 118 ERE 120 >gi|303246217|ref|ZP_07332497.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] gi|302492280|gb|EFL52152.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio fructosovorans JJ] Length = 300 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D N +L + Y L +GMEALE+ +PD+I++DI + + G Sbjct: 5 KKILIVDDMRANTRLLAKKLSGE-YECLTATSGMEALEVVHAQQPDLILLDILMPGMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +Q+K+D ++IPVI +T+ DE + G YI KP + I I+ +I Sbjct: 64 ETCRQLKDDERSRKIPVIFITSLDEDEDEAKGLDLGAVDYIRKPFRMPIVKARIRNHI 121 >gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1] Length = 1143 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56 ++++IVED+ N+ ++E G I RNG EA++ Q D+++MD+ + Sbjct: 1018 RRILIVEDDVRNVYSLSSVLEPRGAIVQIARNGQEAIDALAQAGDDAAKAVDLVLMDVMM 1077 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GL T++I+ D ++P++ +TA AM D++R + G Y++KPI + + + Sbjct: 1078 PVMDGLTATREIRADPRWTKLPIVMLTAQAMPDDQQRCLEAGANDYMAKPIDVDKLLSLV 1137 Query: 117 KKYIGE 122 + ++ Sbjct: 1138 RVWMPR 1143 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 4/115 (3%) Query: 4 KVMIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V ED+ + ++ +L G+ + N +A++ A + KP I++D+ L + SGL Sbjct: 750 RVLLVIEDDAVFAQIVCELSRELGFQCVIAGNAEDAIKHAHEFKPSAIVLDLGLPDQSGL 809 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + ++K D E + IP+ ++A + G Y KP+ + ++ Sbjct: 810 TVLDRLKHDDETRHIPIHVISAADQS---QTALSLGAVGYHIKPVKREELAQVLE 861 Score = 80.2 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 47/95 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+IVED+ + L+ + + E LE R+ D +++D+ L + SG Sbjct: 871 MRRVLIVEDDAVQRDAVGKLLGSDDVETIGVGTAAECLEQLRRETFDCMVLDLTLPDTSG 930 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ + + ++ + PVI T + D+E+ + Sbjct: 931 FDLLETLSQEGDHGFPPVIVYTGHDLSADDEQRLR 965 >gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ GY +G +LA D++I+D L E SGL+ Sbjct: 2 RILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + +++ +++PV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 62 LCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRS 119 >gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + + + +E GY+ + +G EA+ELAR+ P+++I+DI L + G E Sbjct: 10 TILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + IK+ + VI +TA D+ + G + Y++KP S + I I + Sbjct: 70 VCSIIKKSIKTS---VIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNS 126 >gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8] gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans A8] Length = 242 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IVED+ +L R + GY +G E + + D +++D+ L I GL Sbjct: 5 RRVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLMLPGIDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K+ + + P+I +A + + + G + Y++KP S+ + ++ + Sbjct: 65 EICKRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces ambofaciens ATCC 23877] Length = 1368 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 55/113 (48%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +DN + L++ +GY +G+ ALE R PD++I D+ + + GL + Sbjct: 621 LVADDNADMREYLTRLLDGAGYQVDTVDDGLAALEAVRADAPDLVISDVMMPGLDGLGLV 680 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++ D +PV+ ++A A + + G + Y+ KP + + + ++ Sbjct: 681 AALRTDPRTVSVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRA 733 >gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I ED + +L + Y + NG+EAL++ ++ D+ I+DI + + G ++ Sbjct: 3 ILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIMMPGLDGFKV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E S IPVI +TA ++ G + YI KP S + +K Sbjct: 63 LKKIREKS---NIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRR 117 >gi|298385839|ref|ZP_06995396.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298261067|gb|EFI03934.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1376 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + + NG E + A PD+I+ DI + + G+ + Sbjct: 1111 LIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQALNRIPDIIVSDIMMPVMDGITLC 1169 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1170 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1224 >gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 237 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++VED+ + G+ NG E ++A +K D++I+DI L E++GL Sbjct: 6 AKILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGL 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K ++E++ +P++ +TA + G + Y++KP + +K + Sbjct: 66 EICKAVREENT--HVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRR 123 Query: 123 A 123 + Sbjct: 124 S 124 >gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1377 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDN +N ++ +L+ + G NG ALE+A D+I+MD+Q+ + GL Sbjct: 1012 ARVLLAEDNPINREVALELLNSVGLRVETAENGQVALEMAADGDYDLILMDVQMPLMDGL 1071 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I+ + P++A+TA A + D + G ++ KP+ + + +++ E Sbjct: 1072 SATRAIRALPNWCDKPILALTANAFEEDRRACLEAGMNDFVPKPVEPLDLFDALLRWLPE 1131 >gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 281 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ ++ R+ + +G++ + +G +ALE + PD++I+D +L I G Sbjct: 54 RRLLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESVAELVPDLVILDRKLPGIDGT 113 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ +PV+ +TA + D + G + Y++KP S + ++ + Sbjct: 114 EVCRRLRS---FTAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILKR 170 >gi|253569176|ref|ZP_04846586.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841195|gb|EES69276.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1376 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + + NG E + A PD+I+ DI + + G+ + Sbjct: 1111 LIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQALNRIPDIIVSDIMMPVMDGITLC 1169 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1170 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1224 >gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D+ +L R + GY L +G EA +L Q + I+D+ + + Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E ++PVI +TA D+E+ G + Y++KP + + IK + Sbjct: 61 GWELCREIRE---FYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 243 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + +E Y G +ALE R + D+II+D+ L I G Sbjct: 7 HILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLPGIDGFA 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ +PV+ +TA + + D GG + Y++KP +L+ F+ + + + Sbjct: 67 VCREIRQLD--ARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRS 124 >gi|170722660|ref|YP_001750348.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida W619] gi|169760663|gb|ACA73979.1| integral membrane sensor hybrid histidine kinase [Pseudomonas putida W619] Length = 643 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 69/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N + ++ + G +G++A+E Q I+MD +L ++ G E Sbjct: 516 RILLVEDNPVNQSVIEAMLRSLGLEVSVAHDGIQAVEKVSQQHFAAILMDCRLPQVDGYE 575 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ ++P+IA+TA A++GD ER G + Y+SKP+ + + +++++ Sbjct: 576 ATRRIRLLPNGGKLPIIALTANALQGDRERCMAAGMDDYLSKPLRRTDLQQVLQRWL 632 >gi|29348458|ref|NP_811961.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340362|gb|AAO78155.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1376 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + + NG E + A PD+I+ DI + + G+ + Sbjct: 1111 LIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQALNRIPDIIVSDIMMPVMDGITLC 1169 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1170 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1224 >gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 214 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 64/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+I +D+ +E+ GY L +G +ALE+ ++P ++I DI + ++ Sbjct: 1 MSLTVLIADDDPGIRLSVSRFLESEGYCCLMAGDGAQALEMIHHYQPHLLITDIAMPNMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI++ L+ +PVI +TA + R + G + Y++KP L+ ++ + Sbjct: 61 GYELVRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGGDVYLAKPFDLNELAAVVRNLL 120 Query: 121 GEA 123 A Sbjct: 121 DRA 123 >gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 246 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + L + G+ G++AL+ A + PD++I+D+ L +I G E Sbjct: 7 RVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPDIDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + PV+ +TA D+ R G + Y++KP SL+ + + + Sbjct: 67 VARRLGREGV--PTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRR 123 >gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] Length = 221 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED ++ ++ + Y +G EAL+ + D+II DI + ++G E Sbjct: 2 RILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + PVI +TA D+ G + YI KP + I+ + Sbjct: 62 FIEKLRNNKN--NTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118 >gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 235 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV++V+D E +L ++ GY + +G AL++ R KPD++++D+ + + G Sbjct: 8 AKVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + ++A D+ G + Y++KP SL + + + Sbjct: 68 GLLRRLRADGI--DAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRR 125 Query: 123 A 123 + Sbjct: 126 S 126 >gi|163850400|ref|YP_001638443.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|218528960|ref|YP_002419776.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|254559654|ref|YP_003066749.1| response regulator [Methylobacterium extorquens DM4] gi|163662005|gb|ABY29372.1| diguanylate cyclase [Methylobacterium extorquens PA1] gi|218521263|gb|ACK81848.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium chloromethanicum CM4] gi|254266932|emb|CAX22731.1| response regulator (CheY-like); diguanylate cyclase (GGDEF) and response regulator receiver domains [Methylobacterium extorquens DM4] Length = 457 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D N++L + + + NG +AL + + + DV+++D+ + + Sbjct: 1 MSARVLIVDDLYPNVRLLETKLSLEYFDVVVAMNGPDALAICEKGECDVVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + +PV+ VTA D R G + +++KPI + M ++ + Sbjct: 61 GFEVCRRLKANPATAHLPVVIVTALDQPADRLRGLDAGADDFLTKPIDDTALMTRVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 79.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 1/112 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED + + + + AL A + D+ ++ + L+ GL Sbjct: 156 ARILLVEDRASAIDRISTALSQH-HQVTVETDPHRALVRAPEEGFDLALVSLDLEGFDGL 214 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + Q++ + + +I + K R + G Y+ +P+ + + Sbjct: 215 RLCSQLRSLERTRSMALIMLGEMHEKTRITRGLEFGVNDYLLRPVDRNELIA 266 >gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 232 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++ +D++L + ++ GY L+ NG+EALE + + +I+MDI + ++ Sbjct: 1 MTYTVLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEVHLILMDIMMPQLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL T +I+++ + IP+I ++A + D+ G + YI+KP + + ++ + Sbjct: 61 GLSATLKIRQE---KNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1800 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1679 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1738 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1739 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1798 >gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W] gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W] Length = 223 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|90410641|ref|ZP_01218657.1| hypothetical DNA-binding response regulator OmpR [Photobacterium profundum 3TCK] gi|90328882|gb|EAS45166.1| hypothetical DNA-binding response regulator OmpR [Photobacterium profundum 3TCK] Length = 257 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + + Y +G E + R + D+I++D+ L GL Sbjct: 11 HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGDEMEQCLRDNTIDLIVLDLMLPGKDGLT 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ IPVI +TA + D+ + G + Y+ KP + + IK I Sbjct: 71 LCRELR---VHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARIKAVIRR 126 >gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 223 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++IV+D++ ++L I GY ++ +G AL D+II+DI + E+ G+ Sbjct: 2 KILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+++++S+ IP+I +TA D+ + G + Y++KP + M +K + Sbjct: 62 QVVKKLRKESQ---IPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118 Query: 123 A 123 + Sbjct: 119 S 119 >gi|312960966|ref|ZP_07775471.1| two-component response regulator [Pseudomonas fluorescens WH6] gi|311284624|gb|EFQ63200.1| two-component response regulator [Pseudomonas fluorescens WH6] Length = 413 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D KL L++ GY +G EAL L Q PD+I++D+ + + G Sbjct: 6 ATLLIVDDEPQVRKLLETLLQHEGYQTRSASSGEEALTLVAQQPPDLILLDVMMPGMDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++K + IP+I ++A G G E +I+KP+ ++ + Sbjct: 66 EVANRLKSNPATSNIPIIMLSALNEPGARVSGLHTGAEEFINKPVEHIELWLRVRNLLR 124 >gi|260642598|ref|ZP_05416521.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260621410|gb|EEX44281.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1310 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 61/113 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN + + + +G EAL+L R H PD+I+ D+ + ++G E Sbjct: 1059 TVLVVDDNPDLTDFLKKSLGEYFKRVVIASDGAEALQLIRSHTPDIIVSDVMMPRMNGYE 1118 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + K IKED + IP+I +TA + + K G +AY++KP + + ME I Sbjct: 1119 LCKSIKEDITISHIPIILLTARDDQQSQLSGYKNGADAYLTKPFEIEMLMEII 1171 >gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550] gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550] Length = 243 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ ++ G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 77 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131 >gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 835 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +N +L ++E G + NG EA++ + + D+I MD Q+ E+ G E Sbjct: 710 RVLLVDDTPVNRRLAGKMLEKLGLVVDIAVNGREAVDKSAELSYDLIFMDCQMPEMDGFE 769 Query: 64 ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ P+IA+TA AM D +R G + YISKP+ T+ +++ Sbjct: 770 ATTRIRSREAGSAHTPIIAMTASAMPEDRKRCIDVGMDDYISKPVRQDTLRSTVSRWL 827 Score = 89.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 + IV+D+E+N ++ +L+++ + AL R D+ ++D L Sbjct: 520 AHIAIVDDSEINRRVLVELMQSWNSRVSPYEDAQSALVALRAAQSRGTPYDIAVIDSDLP 579 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++SG E+ ++++ D LQ++ ++ +T+ +GD R ++ G Y++KP + +ET+ Sbjct: 580 DLSGAELGRELRRDPALQDLRMVLLTSTPRQGDGRRYQELGFSGYLTKPTKRGVLLETLS 639 Query: 118 KYIG 121 +G Sbjct: 640 TVLG 643 >gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 1711 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN L+ Y +G +AL+ A PD+++ D+ + + G+ Sbjct: 627 RVLVADDNADMRGYLLRLLGPH-YDVRAVADGRQALDAALADPPDLVVSDVMMPGLDGMG 685 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121 + ++ + +PV+ ++A A + G + Y+ KP S + ++ + +G Sbjct: 686 LLAALRAEPRTARVPVVLLSARAGEEAAVEGLAAGADDYLVKPFSAQELLARVRAHLELG 745 Query: 122 EA 123 A Sbjct: 746 RA 747 >gi|198275803|ref|ZP_03208334.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135] gi|198271432|gb|EDY95702.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135] Length = 1393 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + + + + L NG EAL+L H PD+++ DI + E++G+ + Sbjct: 1134 ILIVEDEDEIRNYLLTELGSH-FRVLSCSNGKEALDLIMHHMPDLVLSDIMMPEVNGITL 1192 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K++ + IPVI +TA + D G +AYI+KP +L I + TI+ I Sbjct: 1193 LRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENLI 1248 >gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS] gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS] Length = 403 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + + G+ L +NG +AL++ +PD+I++D+ + +SG E+ Sbjct: 12 ILIVDDILENISVLFRFLGNEGFKVLVAQNGQQALKIVDLTRPDIILLDVMMPGLSGFEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K Q+IP+I +TA A D+ K G YI+KP + I ++ Sbjct: 72 CQQLKSQQNTQDIPIIFMTALADTVDKVNGFKLGAADYITKPFQHEEVLVRINAHL 127 >gi|28869414|ref|NP_792033.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852655|gb|AAO55728.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331018585|gb|EGH98641.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 641 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G++A+ A +I+MD +L + G Sbjct: 513 RSILLVEDNPVNRTVVQAMLHNLGCKVDVAVDGVDAVMKAGAGNYALILMDCRLPVMDGY 572 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A+ GD + + G + Y+ KP + + +++++ Sbjct: 573 EATRKIRQLSGLERIPIIALTANALHGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 630 >gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L +D++E G+ ++ NG + LE D+I++D+ + ++G Sbjct: 1 MAKILLVDDDVELTALLKDILELEGFDVVEANNGQQGLEKVDS-SIDLILLDVMMPVMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E PV+ +TA + D + G + Y+ KP S + ++ + Sbjct: 60 TEMLRRLRES---HTTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++VED+++ L ++ GY + +G A E ++ P ++I+D+ L +IS Sbjct: 1 MKQLVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLMLPKIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+ E+ +I VTA + K G + Y++KP S + M I+ + Sbjct: 61 GEEVCQWIRAQER-NEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 1354 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN ++ R + ++ Y L +G +A +L + PD++I D+ + G+ Sbjct: 1107 TLLVVDDNADFLEFMRLSLSSA-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1165 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D IPVI +TA + K + + G + YISKP ++ + + ++ I Sbjct: 1166 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1222 >gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 225 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + R +E G+ NG++ L +A++H+ D I++DI + ++G Sbjct: 2 RILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + P++ +TA + D+ G + ++SKP S ++ + ++ + Sbjct: 62 VCERLRAAEDW--TPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRR 118 >gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 367 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D E ++ + +E G+I +G EA+ LA++ P +II+DI L I+G E Sbjct: 149 HILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGYE 208 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +IK+ +I +TA D + G + Y+ KP S + I + + Sbjct: 209 VCSEIKKWVNAS---IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNS 265 >gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1] Length = 273 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++ +D+ ++ + G+ ++ +G+EALEL + H+ +++I+D+ + + G Sbjct: 43 MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDG 102 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 103 IRTTLKVRE---TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLR 159 Query: 122 E 122 Sbjct: 160 R 160 >gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + + GY + N LE+ + ++++DI + ++GLE+ Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKEDIHLVLLDIMMPGMNGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E++ IP+I ++A + D+ G + Y+ KP + +K ++ Sbjct: 66 CKKIRENN---NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRR 120 >gi|213968170|ref|ZP_03396315.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|301383824|ref|ZP_07232242.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058498|ref|ZP_07250039.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302133390|ref|ZP_07259380.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927150|gb|EEB60700.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 641 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN +N + + ++ G +G++A+ A +I+MD +L + G Sbjct: 513 RSILLVEDNPVNRTVVQAMLHNLGCKVDVAVDGVDAVMKAGAGNYALILMDCRLPVMDGY 572 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S L+ IP+IA+TA A+ GD + + G + Y+ KP + + +++++ Sbjct: 573 EATRKIRQLSGLERIPIIALTANALHGDRDACLQAGMDDYLPKPFKHADLQQVLQRWL 630 >gi|170748283|ref|YP_001754543.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|170654805|gb|ACB23860.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] Length = 123 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 81/120 (67%), Positives = 104/120 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E +GY L+T +G+EA+ELAR H PD+I+MDIQL E+S Sbjct: 1 MKKTVLIVEDNELNMKLFNDLLEANGYATLKTAHGIEAIELARAHHPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED +L+ IPVIA+TAFAMKGDEERIR+GGCEAY+SKPIS++ F+ T++ Y+ Sbjct: 61 GLEVTKWLKEDDDLKGIPVIAITAFAMKGDEERIREGGCEAYLSKPISVAKFLATVRAYL 120 >gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G EA+ + PD++++D+ L +SG Sbjct: 1 MTHVLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K I+ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEICKTIRAKSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] Length = 1325 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDNE+N ++ L+E +G NG EALE D+++MD+Q+ + G+ Sbjct: 992 QKLLLVEDNEVNQEVALGLLEETGLSVTIANNGQEALEKLENADFDLVLMDMQMPVMDGI 1051 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ + + +P++A+TA AM D ER + G ++SKPI + F + +K+++ Sbjct: 1052 TATKYIRTNGRWKNLPIVAMTANAMATDIERCLQVGMNGHLSKPIEVDKFYQVLKQFL 1109 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 52/114 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL + D++ D + ++G+ Sbjct: 852 KRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQHKPFDMLFADWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ ++K VTA+ + + +A I KP++ S ++ I Sbjct: 912 ELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKLIDALIVKPVNPSNLLDAI 965 >gi|260768957|ref|ZP_05877891.1| response regulator [Vibrio furnissii CIP 102972] gi|260616987|gb|EEX42172.1| response regulator [Vibrio furnissii CIP 102972] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++V+D+ +L + + SG+ +G AL PD++++D+ L G Sbjct: 5 HILVVDDDIEICELLDEYLSKSGFSVATVSDGR-ALAQYLTDHGYPDLVLLDVMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ DS +P+I +TA + + D+ G + YI+KP S M IK + Sbjct: 64 FTLCQKIRRDS---NVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] Length = 243 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ ++ G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 77 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131 >gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED +L RD E +G+ +G E L LA +II+D+QL + Sbjct: 1 MSSRILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ QI++ ++E+P++ V+A + D+ R G + YI+KP S S + K ++ Sbjct: 61 GFELCSQIRQ---VKEVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHL 117 Query: 121 GE 122 Sbjct: 118 TR 119 >gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1857 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G L G EA+ + + +++MDI + E+ G Sbjct: 1737 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEARADIAIVLMDIMMPEMDG 1796 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E + I+ + + +P++A+TA AMKGD E+ + G Y++KP++ + ++ ++ Sbjct: 1797 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1856 Query: 122 E 122 Sbjct: 1857 R 1857 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ L G+ L G +AL LAR+H+P I +D+ L ++ G + Sbjct: 1472 LIVEDDPHYARVLAQLARDGGFKVLIASRGADALALARRHRPTAISLDVFLPDMLGWTVL 1531 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +K+D + IPV VT + D G A++SKP + +++ Sbjct: 1532 SHLKQDPATRHIPVQIVT---LDEDRRHGLARGAYAFLSKPTTSEDLGAALRRI 1582 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN L+ + G EAL R D +++D++L ++SG Sbjct: 1591 RRLLIVEDNPAERMSVATLLGHEDIAIVTAETGEEALAALRAGAFDCVVLDLKLPDMSGF 1650 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++++ED L ++PV+ T A+ +E+ + + K + S ++ Sbjct: 1651 EVLERLREDHALADLPVVVFTGRALSPEEDARLHALARSVVVKGVESPERLLD 1703 >gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|290770180|gb|ADD61939.1| putative protein [uncultured organism] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++ A G E L+ R+ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893] gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893] Length = 238 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ +L + + GY + G + + D+I++D+ L G + Sbjct: 8 ILVVDDDLAIRELLHEHLSRVGYDVMTAAEGDSMRRTLSEARVDLIVLDVMLPGDDGFTL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I +TA + + D + G + Y++KP S +K + + Sbjct: 68 CREIREHSQ---VPIIMLTASSDETDRVVGLEIGADDYLAKPFSARELQARVKALLRRS 123 >gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 224 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ K ++T Y+ G E + + D+I++D+ L +++G+ Sbjct: 2 RILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLPKLNGIN 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ +PV+ +TA D+ G + Y+ KP L I+ + Sbjct: 62 LCQRIRQAGYT--MPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRR 118 >gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1] gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis MR-1] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + +I++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQGST--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 1021 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +DN L+ + Y +G+ ALE ++ +PD+++ D+ + + GL Sbjct: 644 HILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLG 702 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++ D + ++PVI ++A A + + + G + Y+SKP S + ++ + A Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762 >gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA + +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALR---TAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1056 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V++ N L L+ G++ + NG+EA+ H PD+I MDI++ + G + Sbjct: 852 RILVVDEIPENRLLVSQLLTPLGFVIFEAENGLEAITQWEHHSPDLIWMDIRMPVMDGYQ 911 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+QIK + +IA+TA A+ DE+ I GC+ + KP +E I ++G Sbjct: 912 ATQQIKAKPAGKNTIIIALTASALSQDEQAILDAGCDDILHKPFQAIELLEKIATHLG 969 >gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440] gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ + G++ +G AL R+++PD++++D+ L +S Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + I+ +S +P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GIDVARSIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 231 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 59/117 (50%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ KL +E +GY + +G A E + D+I++DI L ++G E+ Sbjct: 7 LVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSRKCFDLILLDIMLPGMNGFELC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++IK+ ++IP+I +TA + D + G + Y+ KP S I+ + Sbjct: 67 QKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLKR 123 >gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + IP++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAEGHT--IPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01] gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01] Length = 245 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +L + GY N + L + +++++D+ L GL Sbjct: 13 KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGLS 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E + +IP+I +TA + + + G + Y++KP + + IK + Sbjct: 73 ACRRLRESNN--QIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRR 129 >gi|239908802|ref|YP_002955544.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239798669|dbj|BAH77658.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 384 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IV+D +N+ + + + + + +G A++LA +PD+I++DI + + G Sbjct: 1 MGKVLIVDDERINIHILSAAL-KNDHSVIIAIDGTTAIDLALSERPDLILLDIMMPGMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++K ++IP+I +TA + E + G YI+KP ++++ +K ++ Sbjct: 60 YEACSKLKASPATRDIPIIFITALSDAKSESHGLECGAIDYITKPFNVALVKSRVKNHV 118 >gi|260642573|ref|ZP_05416441.2| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] gi|260621480|gb|EEX44351.1| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] Length = 1353 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE + ++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNILEAGNGEEALEKLKGNEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SLSI I+ + Sbjct: 1163 LCKNVKQNIPTCHIPVIMLSAKSETKDQMEGLQMGADDYIPKPFSLSILTTKIQNMMR 1220 >gi|224537041|ref|ZP_03677580.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM 14838] gi|224521349|gb|EEF90454.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM 14838] Length = 1439 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNE +++ Y ++ NG LE + PD++I DI + + G+E+ Sbjct: 1176 VLVVEDNEELRHFMVNILRKD-YHVIEAENGKTGLEKIKLKIPDLVISDIMMPCLDGIEL 1234 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K+D + IP + ++A A D + + G + YI+KP S I + Sbjct: 1235 LEEVKKDYNVSHIPFVLLSAKATLDDRIKGLEYGADDYITKPFSSGYLRARISSLL 1290 >gi|153807471|ref|ZP_01960139.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185] gi|149129833|gb|EDM21045.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185] Length = 1516 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +GME A ++ PD+II D+ + E G+E+T Sbjct: 1239 LLVEDNQELREFLRSIFTPV-YRVVEAADGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1297 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1298 RELRADMMTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1352 >gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + +E Y +G E L+LA + D+I++D L + GL Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++E L P++ +TA D G + Y++KP + + + ++ + + Sbjct: 62 VLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRS 119 >gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby] gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Corby] gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I++D+ L +E G+ + +G ++ A D II+D+ L +++ Sbjct: 1 MSSSILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+E E PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 61 GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus amyloliquefaciens LL3] Length = 250 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ +L R ++E SG+ + +G A++L D+II+D+ + ++ G E+ Sbjct: 29 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 88 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++ +IP++ +TA D+ + G + Y+ KP +K + Sbjct: 89 SEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 143 >gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ +DN+ ++ + L+ GY + NG EA+EL + ++I+D+++ + S Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDE-SIGLVILDVEMPKKS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + +I++ S +P++ +TA+ + D+ G + YI+KP S S + +K + Sbjct: 60 GIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALL 116 Query: 121 GEA 123 A Sbjct: 117 RRA 119 >gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1235 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 75/116 (64%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY NG A+++ + D ++MDIQ+ + GL Sbjct: 1113 VLLVEDNFINQQVATELLKSAGYEVDVADNGQIAIDMIAEKDFDAVLMDIQMPVMDGLTA 1172 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I++ LQE+P+IA+TA AM GD E+ G A+I+KPI L+ +T+ +I Sbjct: 1173 TKEIRKHFSLQELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLNELFDTLSYWI 1228 Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++V+DN ++++ ++ + NG EAL + D++++D + E+ G++ Sbjct: 968 KTLVVDDNPTALQIYATVMRDFHFEVDTAANGSEALYKLEKSSVDLLLLDWMMPEMDGIQ 1027 Query: 64 ITKQI-K--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++ + D L + P+ I +T +A + +E + A + KP S + I Sbjct: 1028 VIEELDRMVADGRLDKRPIVIMMTGYAAEPLKEDADRSNIYAMLQKPFKASALFDEI 1084 >gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 361 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D N+ + D ++ SGY L +G AL A Q PDV+++D + + G E+ Sbjct: 30 VLVVDDVPDNLAVLHDALDESGYTVLVATSGETALARAAQAMPDVVLLDAMMPGMDGFEV 89 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121 +++K IP+I +T E G Y++KPI + + ++ Sbjct: 90 ARRLKAQPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMHVHLQGAR 149 Query: 122 EA 123 A Sbjct: 150 RA 151 >gi|218245591|ref|YP_002370962.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|257058637|ref|YP_003136525.1| response regulator receiver protein [Cyanothece sp. PCC 8802] gi|218166069|gb|ACK64806.1| response regulator receiver protein [Cyanothece sp. PCC 8801] gi|256588803|gb|ACU99689.1| response regulator receiver protein [Cyanothece sp. PCC 8802] Length = 121 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 72/121 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V++VED+ + ++ ++E +G+ + +G +AL+ + PDVI++DI + ++G Sbjct: 1 MRAVLLVEDSPVQQEMISGILEDNGWRVIIAEDGFKALKEIEKFSPDVIVLDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D +L+ +PV+ ++ + D K G +AY++KP + TIKK + Sbjct: 61 YEVCRRLKSDPKLKNVPVVICSSKGEEFDRYWGIKQGADAYVAKPFEPIELVGTIKKLLR 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|168182838|ref|ZP_02617502.1| regulatory protein VanR [Clostridium botulinum Bf] gi|237794279|ref|YP_002861831.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657] gi|182674012|gb|EDT85973.1| regulatory protein VanR [Clostridium botulinum Bf] gi|229263114|gb|ACQ54147.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657] Length = 236 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D++ + + Y L+ NG +A+ +++ +I++D+ + + G Sbjct: 1 MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNALHENEIHLILLDVMMPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ +P++ ++A + D+ G + YI+KP + +K + Sbjct: 61 IEVAQKIR---TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 435 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ +++ GY + NG A+ + PD++++DI++ ++ G ++ Sbjct: 13 ILIVDDTPNNLRVLSSILQEQGYEIRKAVNGKMAIRSVQADPPDLVLLDIKMPDLDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+K ++IPVI ++A ++ + G YI+KP + + +K ++ Sbjct: 73 CSQLKAIEATRDIPVIFLSALDDVFNKVLAFQVGGVDYITKPFQVEEVLVRVKTHL 128 >gi|34497033|ref|NP_901248.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] gi|34102890|gb|AAQ59254.1| probable sensory box/GGDEF family protein [Chromobacterium violaceum ATCC 12472] Length = 712 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + L+ T GY ++G EAL+LA +H PD+I++D + + GL + Sbjct: 7 ILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHPPDLILLDFSMPGMDGLAV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + ++IP++ +++ + + G +I KP S + + ++ Sbjct: 67 CRELKLNPRTRDIPILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHL 122 >gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi 103S] gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi 103S] Length = 224 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D ++L + G+ NG E L+ AR +PD +I+D+ + + G + Sbjct: 2 LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGML 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ D + PV+ +TA D+ G + Y++KP SL + ++ + A Sbjct: 62 RRLRADGV--DAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA 117 >gi|288925550|ref|ZP_06419483.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288337766|gb|EFC76119.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 865 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ + ++ ++ Y + NG EALEL Q D+I+ D+ + + GL+ Sbjct: 619 TLLIVEDNDDFRRFIKESLQEE-YTVFEAGNGQEALELTAQESIDMIVSDVMMPVMDGLQ 677 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +IK D IPVI +TA K G + YI+KP ++ I I+K Sbjct: 678 LCHRIKTDINFSHIPVILLTARTADEHVISGLKEGADEYITKPFNMEILKIKIRKL 733 >gi|167580218|ref|ZP_02373092.1| DNA-binding response regulator OmpR [Burkholderia thailandensis TXDOH] gi|167618327|ref|ZP_02386958.1| DNA-binding response regulator OmpR [Burkholderia thailandensis Bt4] gi|257139875|ref|ZP_05588137.1| DNA-binding response regulator OmpR [Burkholderia thailandensis E264] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + + + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D++ ++ + + Y + NG EAL+ R + ++I+MDI + ++ Sbjct: 1 MSYKMLIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I+ L IP+I +TA + D+ + GC+ YI+KP L + + Sbjct: 61 GFEAIKRIR---RLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + D +ET Y +G EAL +PD+I++D+ + + GL Sbjct: 9 TLLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVMMPALDGLA 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + P++A+TA D G + Y+ KP L I+ + Sbjct: 69 VCRALRSAGD--RTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRR 125 >gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D ++ G+ + G EAL L D++++D+ L +ISG + Sbjct: 2 RILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGHDLVVLDVGLPDISGFD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ +S ++PVI +TA + + D + G + Y++KP S + ++ + + Sbjct: 62 VCRLLRRNS---DVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRRS 118 >gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 719 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 ++++ EDN N + G+ NG+EAL+L DVI+MD+Q+ E+ G Sbjct: 598 ARILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSGPFDVILMDVQMPEMDG 657 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE TK+I+E EIP+IA+TA+AM+GD E+ G +AY SKP+++ ++ I K + Sbjct: 658 LEATKKIREQGN--EIPIIALTAYAMEGDREKFLSNGMDAYSSKPVNIDELVQIIGKLVP 715 Query: 122 E 122 Sbjct: 716 R 716 >gi|170288268|ref|YP_001738506.1| response regulator receiver protein [Thermotoga sp. RQ2] gi|170175771|gb|ACB08823.1| response regulator receiver protein [Thermotoga sp. RQ2] Length = 122 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D+ + K+ ++ GY ++ NG ALE + PD+I++DI + + Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALERLSEFTPDLIVLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E E + IPVI +TA + DE G + KP S S F+E +K + Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 Query: 121 GE 122 E Sbjct: 121 NE 122 >gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 KV++V+D KL +D + S Y L+ NG +A+++ Q +II+D+ + ++ G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+I++ ++P+I +TA + + DE + G + YISKP S I + ++ + Sbjct: 65 QVCKEIRK---YSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|315126945|ref|YP_004068948.1| response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Pseudoalteromonas sp. SM9913] gi|315015459|gb|ADT68797.1| response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Pseudoalteromonas sp. SM9913] Length = 331 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IV+D N+K+ R+++ S Y ++G AL+L P +I++D+ + +++G Sbjct: 8 ARILIVDDEPANLKVMREVL-ASNYRLSFAKSGAVALQLIENDPPKLILLDVMMPDMNGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K + + IPVI VTA + DE G YI+KPIS +I +K ++ Sbjct: 67 EVCKILKANPKTAHIPVIFVTALTQEQDESEGFSLGAVDYITKPISPAIVKARVKTHL 124 >gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083] Length = 1823 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1703 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDGY 1762 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1763 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMQQWMR 1821 >gi|295087985|emb|CBK69508.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1316 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + + + +G+EAL+L + H PD+II D+ + ++G E+ Sbjct: 1060 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP++ +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP+I +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQGNT--IPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|294643204|ref|ZP_06721031.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|292641440|gb|EFF59631.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 1316 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + + + +G+EAL+L + H PD+II D+ + ++G E+ Sbjct: 1060 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP++ +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++VED E +E GY + ++G EAL L + +I++D L Sbjct: 1 MQKVKILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWMLPGY 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + ++I++ ++PVI +TA + D G + YI+KP + + I+ Sbjct: 61 DGLTVLRRIRQ---TSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|237712907|ref|ZP_04543388.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262409652|ref|ZP_06086192.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229447026|gb|EEO52817.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262352505|gb|EEZ01605.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1316 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + + + +G+EAL+L + H PD+II D+ + ++G E+ Sbjct: 1060 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP++ +TA K + K G +AY++KP + + ME I+ + E Sbjct: 1120 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 1179 Query: 123 A 123 + Sbjct: 1180 S 1180 >gi|298530225|ref|ZP_07017627.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509599|gb|EFI33503.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 850 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 74/122 (60%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63 ++IVED ++N+ L R +++ G+ L +G EALE+ + ++ +I+MD+ + G E Sbjct: 728 ILIVEDEKINLMLIRRMLQKKGFNVLTAMDGREALEVLKSNQDISLILMDVMVPVHDGYE 787 Query: 64 ITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T+ I++ L+++P++AVTA A + + G AY+SKP+ S M+ I++Y+ Sbjct: 788 LTRMIRKGDFDGLKQVPIVAVTALADAASRQHCFEAGMNAYLSKPVDNSELMKMIRRYLA 847 Query: 122 EA 123 + Sbjct: 848 RS 849 >gi|71909432|ref|YP_287019.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849053|gb|AAZ48549.1| Cache sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 759 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ ED +N ++ + ++ G +G+ AL LA + +I+MD+Q+ ++GL Sbjct: 636 ARILLAEDEPINREVAQIMLNDVGMAVDVAEDGIAALRLAGEVDYALILMDMQMPNMNGL 695 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+QI++ +E P++A+TA A D+ER + G +I+KP+ + + ++ Sbjct: 696 DATRQIRQLPRHKETPILAMTANAFVEDKERCFEAGMNDFIAKPVEPESLYDKLLHWLSR 755 >gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 223 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++VED + + +E + Y + +G+E E + D+II+DI L +ISG Sbjct: 1 MKKILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIMLPKISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++S +P+I +TA ++ + + YISKP S I ++ ++ + Sbjct: 61 FAVCEMIRKES---HVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + ++ + + ++ G E +E AR+HKP+V+++DI L + G Sbjct: 1 MDKILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++ E + +I +TA + D+ + G + YI KP + IK + Sbjct: 61 LEVCKTLRQ--EFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + +I++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP+I +TA + D + G + Y+ KP + + K + Sbjct: 67 ICRRLRQKENT--IPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 >gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c] gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + + + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ EIP++ +TA + D + G + Y+ KP + + +K + Sbjct: 67 ICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRR 123 >gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 1040 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N ++ +++ G NG EAL DV++MDIQ+ + GL Sbjct: 912 ARILLVEDNIVNQQVAMLMLKKFGLHVDGVANGKEALSALMSLPYDVVLMDIQMPVMDGL 971 Query: 63 EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T++I+ IP+IA+TA A + D E G Y+SKP++ +T++K++ Sbjct: 972 EATRRIRNGECGTSAIPIIAMTAHAKQSDRELCLATGMNDYVSKPVNQQALADTLEKWLP 1031 Query: 122 E 122 + Sbjct: 1032 K 1032 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57 +K +IV+DN N ++ + + G ++ NG +AL++ + ++D+Q+ Sbjct: 762 QKALIVDDNATNREILSKRLLSWGMRPEESDNGQDALDMLIRASTSTDAFTIAVIDMQMP 821 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G+ + K I+E L + +I +T+ G+ K G A++ KP+ + + Sbjct: 822 EMDGVMLGKAIREHEALMSLQMIMMTSLGNNGESSLAEKAGFSAWLQKPVQIKKLKNAL 880 >gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 224 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D L + SG+ +G EA + + D++I+DI + G E+ Sbjct: 4 ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMPGEDGFEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ S +P+I ++A + D+ + + G + YI KP S + + + Sbjct: 64 CSRIRGKS---NVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRR 118 >gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ Y + EAL + D+ I+DI L ++S Sbjct: 1 MQEKILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIMLPDMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ + P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GFTLCQKIRVNHAY---PIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 271 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ ++ GY L+ +G EALE+ ++++ ++IMD+ + + G Sbjct: 42 MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDG 101 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E+S IP+I ++A D+ G + Y+ KP + + +K + Sbjct: 102 IRATLKIREES---SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLR 158 Query: 122 E 122 Sbjct: 159 R 159 >gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1821 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ + Sbjct: 1761 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMRD 1820 >gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis] gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis] Length = 213 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L D ++ GY+ L +G+ AL ++ +PD+I++D + + G E Sbjct: 1 ILIVDDTPDNLALLSDALDEVGYMVLVALDGLSALNRIQRRRPDLILLDAMMPGLDGFET 60 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IK D+ +IPV+ +TA + G Y++KPI+ + + ++ A Sbjct: 61 CQRIKADAATADIPVLFMTALTDSEHVVKGFAAGGIDYVTKPINTEEVLARVASHLRTA 119 >gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 243 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 3/124 (2%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K +++IVED +L + G+ + ++ + A PD I++D L Sbjct: 1 MKHQARILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDAVLPDAILLDWMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SGL + + ++ + IP++ +TA + D+ G + YI+KP S + I+ Sbjct: 61 QSGLALARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 119 YIGE 122 + Sbjct: 121 VLRR 124 >gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2] Length = 896 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN LN K+ ++ G NG+EALE+ Q K D+++MDIQ+ + GL Sbjct: 780 RILVAEDNPLNQKVISAILINKGCTPDIAENGLEALEMLAQRKYDLVLMDIQMPLLDGLA 839 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI+ + + + +PVI ++A AM D G Y+ KP+ + + I KY+ Sbjct: 840 TTEQIRLNPQFKNLPVIGLSANAMDSDVVNALAVGMNDYVVKPLDPNKLFKAILKYV 896 >gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4] gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQNGNT--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1170 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 + +++V+D+ N+ +E G + RNG+EA++ + D+++MDI + E+ G Sbjct: 1046 RTILVVDDDVRNVFALTSALEQKGALVEIARNGLEAIDKLQHDETIDLVLMDIMMPEMDG 1105 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I++++ ++P+IAVTA AMK D++R + G Y++KPI L I+ ++ Sbjct: 1106 FTAMQEIRKEARFAKLPIIAVTAKAMKDDQDRCLRAGANDYLAKPIDLDRLFSLIRVWLP 1165 Query: 122 E 122 + Sbjct: 1166 K 1166 Score = 95.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 3/111 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED ++ RDL Y L ++N + + A Q+KPD I++D++L + SGL + Sbjct: 780 VLVIEDEPQFARILRDLAHELEYSCLLSQNADDGFDTAVQYKPDAILLDMRLPDHSGLTV 839 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 +++KE+S + IPV V+ ++ +E + G Y KP + + Sbjct: 840 LERLKENSATRHIPVHVVS---VEDRKEAALQMGAVGYAMKPTTREELKDV 887 Score = 87.9 bits (218), Expect = 5e-16, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 47/93 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L + LIE G +ALEL R D +I+D++L ++ G Sbjct: 900 KRILLVEDDALQRESMSRLIEDVDIEITAVEFGEQALELLRSTVFDCMIIDLKLPDMDGS 959 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIR 95 E+ +++ ++ PVI T + DEE Sbjct: 960 ELLERMAKEDICSFPPVIVYTGRNLTRDEEAAL 992 >gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM 43183] Length = 1303 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 +KV+IV+D+ N+ ++E G L +G ++L +++ PD +++MD+ + + Sbjct: 1179 RKVLIVDDDVRNVFALASVLEGYGMEVLYAEDGQAGIDLLQRN-PDVALVLMDVMMPGLD 1237 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G T+ I+ + ++P+I +TA AMKGD E+ G YI KP+ + ++ ++ ++ Sbjct: 1238 GYATTEAIRGMPQFTDLPIIVITAKAMKGDREKSLASGASDYIPKPVDVDHLLDIMRTWL 1297 Query: 121 GEA 123 + Sbjct: 1298 RRS 1300 >gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 234 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED E ++ + +E GY +G +AL++ ++ + ++II+D+ + EI G Sbjct: 5 QRILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVFKEERFNLIILDVMIPEIDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + I+ + E+P++ +TA D K G + Y+ KP +L + + + Sbjct: 65 QVAETIR--LQNSEVPIMFLTAKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRR 122 >gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05] gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05] gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] Length = 268 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 >gi|326384127|ref|ZP_08205810.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197287|gb|EGD54478.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D ++ R + G+ G +ALE A + PDV+++D+ L ++ G Sbjct: 6 HVLVVDDEPQLLRALRINLRARGFEVTTAATGAQALEAASKRPPDVVVLDLGLPDMDGFT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ +PVI ++A D+ + G + Y++KP + F+ ++ I Sbjct: 66 VLAGLR---GWTSVPVIVLSARTDAADKVQALDAGADDYVTKPFGMEEFLARLRAAIRR 121 >gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D + + + + GY + NG EALE+ ++ +++MDI + E+ G Sbjct: 1 MYSILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVLKEQDIHLVLMDIMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E +PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 IAAMVKIRE---TSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|166368645|ref|YP_001660918.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166091018|dbj|BAG05726.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 378 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ + ++ Y +G E L+ A Q KP +II D + I G Sbjct: 1 MVRILVIDDDGVIQTFLSRALQKE-YEVFVASDGEEGLKQAGQIKPAMIICDWMMPGIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 LE+ +QIK + +L I +T+ GD + G + ++ KPI ++ ++ Sbjct: 60 LEVCRQIKLNPQLSTTFFILLTSLGSVGDRVKGLDAGADDFLCKPIEINELRARVRA 116 >gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ +DN+ ++ + L+ GY + NG EA+EL + ++I+D+++ + S Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDE-SIGLVILDVEMPKKS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + +I++ S +P++ +TA+ + D+ G + YI+KP S S + +K + Sbjct: 60 GIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALL 116 Query: 121 GEA 123 A Sbjct: 117 RRA 119 >gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I+ED L +D +E SG+ +G+ L+ A D+ I+D+ L I G Sbjct: 1 MSKVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+E+ + P++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKQIREE---KNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D + +GY+ L +G+ AL + +PD+I++D + + G E Sbjct: 13 VLIVDDTPDNLAMLSDALNDAGYMVLVALDGLSALNRIERRRPDLILLDAMMPGLDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IKE +IPV+ +TA + + G Y++KPI + + ++ + Sbjct: 73 CRRIKEHPANADIPVLFMTALTESRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTS 131 >gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 233 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IV+D++ + + + + +G++ +G+ A+E R +PD+I++D L I GL Sbjct: 9 RRVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLPGIDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T++++ + + P+I +TA D + G + Y++KP S + I+ + Sbjct: 69 EVTRRVRA---ICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRR 125 Query: 123 A 123 A Sbjct: 126 A 126 >gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] Length = 1235 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 74/116 (63%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY NG A+++ + D ++MDIQ+ + GL Sbjct: 1113 VLLVEDNVINQQVATELLKSAGYEVDVADNGQIAIDMLAEKDFDAVLMDIQMPVMDGLTA 1172 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ L E+P+IA+TA AM GD E+ G A+I+KPI LS +T+ +I Sbjct: 1173 TREIRKHFSLHELPIIAMTAHAMSGDREKSLSAGMNAHITKPIVLSELFDTLSFWI 1228 Score = 99.4 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K ++V+DN ++++ ++ + NG EAL + D++++D + E+ G++ Sbjct: 968 KALVVDDNPTALQIYSTVMRDFHFEVDTAANGSEALYKLEKSSVDLLLLDWMMPEMDGIQ 1027 Query: 64 ITKQI-K--EDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + ++ + D L + P+ I +TA+A + +E + + A + KP S I Sbjct: 1028 VIDELDRMVADGRLDKRPIVIMMTAYAAEPLKEDVDRSNIYAMLQKPFKASALFNEI 1084 >gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 231 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + L + +G+ L G +AL R+ PD++++D+ L ++SG Sbjct: 1 MTSVLLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLMLPDVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QIK D+ + +PV+ +TA + D + G + Y++KP S+ + +K Sbjct: 61 TEVCRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALAR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|94971086|ref|YP_593134.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] gi|94553136|gb|ABF43060.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] Length = 365 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 V++V+D N+ L L++ Y G AL++A+ + PD+I++DI + E+ G Sbjct: 11 TVLVVDDTPDNLALVGGLLKDL-YRVKVANGGARALKIAQADNPPDLILLDIMMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K D + IPVI +TA + DE+ + G YI+KP+S I M +K ++ Sbjct: 70 EVCRQLKADPHTRGIPVIFLTAKSQVEDEQMGFELGAVDYITKPLSPPIVMARVKTHL 127 >gi|90419567|ref|ZP_01227477.1| response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336504|gb|EAS50245.1| response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 126 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 89/123 (72%), Positives = 109/123 (88%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLFRDL+E GY +QTR+G+ A ELAR+H+PD+I+MDIQL EIS Sbjct: 4 MAKTVMIVEDNELNMKLFRDLVEAHGYRTVQTRSGLTATELAREHRPDLILMDIQLPEIS 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+Q+KED EL IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS++ F+ETI+ ++ Sbjct: 64 GLDVTRQLKEDPELFRIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVTKFIETIRSFL 123 Query: 121 GEA 123 G+A Sbjct: 124 GDA 126 >gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 233 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L + ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 258 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 24 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 83 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 84 TRRIRQEGITA--PVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 139 >gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291] gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291] Length = 247 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D++ L + ++ A G E L+ R+ + ++++D+ + + G Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+++ +P++ T+ + R + G + Y++KP + + I I Sbjct: 78 FETLEEIRKE---YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 134 Query: 122 E 122 Sbjct: 135 R 135 >gi|254720504|ref|ZP_05182315.1| Probable transcriptional regulator ycf27 [Brucella sp. 83/13] gi|265985535|ref|ZP_06098270.1| two-component system response regulator [Brucella sp. 83/13] gi|306838128|ref|ZP_07470985.1| transcriptional regulator ycf27 [Brucella sp. NF 2653] gi|264664127|gb|EEZ34388.1| two-component system response regulator [Brucella sp. 83/13] gi|306406865|gb|EFM63087.1| transcriptional regulator ycf27 [Brucella sp. NF 2653] Length = 238 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L + ++ G NG E L++ + D++I+D+ L SG+ Sbjct: 5 AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ +P+I +TA A D+ + G + YI+KP + I+ + Sbjct: 65 EICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121 >gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + + GY + N LE+ + + ++++DI + ++GLE+ Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEEIHLVLLDIMMPGMNGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E++ IP+I ++A + D+ G + Y+ KP + +K + Sbjct: 66 CKKIRENN---NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 212 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++++D+ + L +D +E GY + NG EAL++ Q + PD+II D+ + E+ G Sbjct: 10 KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALDILEQQQIPDMIICDVMMPEMDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++++D+ IP + ++A D + + G + Y+ KP + ++ + Sbjct: 70 YAFVEKLRDDARTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129 Query: 122 E 122 Sbjct: 130 R 130 >gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium gilvum PYR-GCK] gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] Length = 1361 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 57/116 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN + L+ + GY +G +ALE R PD++I D+ + + GL Sbjct: 604 ARVLVADDNADMREYLGRLLRSDGYAVEAVVDGWQALEAIRAEPPDLVISDVMMPRLDGL 663 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + +++ D +PV+ ++A A + + G + Y+ KP + + + ++ Sbjct: 664 GLVAELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRA 719 >gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt domain-containing protein [Geobacter bemidjiensis Bem] gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and Hpt domain-containing protein [Geobacter bemidjiensis Bem] Length = 818 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 75/121 (61%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N ++ R L+E+ G NG+ AL+ ++ D+I MD Q+ + GL Sbjct: 563 RQVLLVEDNVVNQEVGRGLLESLGCRVKVAENGLAALKELQRGAFDLIFMDCQMPVLDGL 622 Query: 63 EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ E +P+IA+TA+AMKGD E G + Y+SKP S ++I++ + Sbjct: 623 EATRRIRQREEGSSARVPIIALTAYAMKGDREACLAAGADDYLSKPFSREQLSKSIERRL 682 Query: 121 G 121 G Sbjct: 683 G 683 Score = 54.0 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 31/81 (38%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+ ++ D+ + +L+ G + AL D+++MD + G Sbjct: 426 SKRALVATDDPELQETLLELMGGLGMDLDCVGDAPGALCRLVAAPFDLVLMDHCVAGTDG 485 Query: 62 LEITKQIKEDSELQEIPVIAV 82 L + I+ + + ++ + Sbjct: 486 LALAAAIRSVAVGHSVRLVLL 506 >gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1444 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 73/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN+LN ++ +L+ +G++ +G AL+ +++ D+++MD+Q+ + G+ Sbjct: 1108 ARILLVEDNDLNQEVAAELLADAGFVVDIADDGAIALDKVQRNTYDIVLMDMQMPVMDGV 1167 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ ++P++A+TA AM+ D++ R G +++KPI + ++I Sbjct: 1168 TATREIRKLGRFDDLPIVAMTANAMRRDQDLCRDAGMNDFVAKPIDPDQLWAALVRWI 1225 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 +V++V+DN+ + DL+ + + + +G A+ ++ ++++D ++ + Sbjct: 958 RVLVVDDNDNARAVLCDLLTSMTFEPSEVASGPAAVAEVKRAADAGIPYALVLVDWRMPD 1017 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G++ + I+ Q ++ VTA+ + +I + G + + KP+S SI +T+ + Sbjct: 1018 MDGIDTARHIRALGVEQAPRLLMVTAYGREEVLNQINEAGIDDVLIKPLSASILFDTVMR 1077 Query: 119 YIG 121 G Sbjct: 1078 MFG 1080 >gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 982 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ ED +N ++ + L+E NG A+ +A + D+I+MD+Q+ + GL Sbjct: 862 RRILLAEDEPINREIAQMLLEAVDLDVEMAENGEIAVRMALANCYDLILMDMQMPVLDGL 921 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+E +P++A+TA A D+ + G +I+KP+ + +T+ K++ Sbjct: 922 AATRRIRELPACAAVPILAMTANAFAEDKAQCLAAGMNDFIAKPVVPEVLYDTLLKWLRR 981 >gi|154492762|ref|ZP_02032388.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184] gi|154087067|gb|EDN86112.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184] Length = 1346 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ EDN + +E + L+ NG++A + PD+++ DI + + GL+ Sbjct: 1092 TLLLAEDNPDVRRYICKHLEPY-FDVLEAENGVDAFNKIAETLPDLVVSDIMMPKKDGLQ 1150 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +IK+D IPVI +TA +M + + G + YI KP ++ + + I+ + Sbjct: 1151 LCSEIKQDLRTGHIPVIIITAKSMVMHIKEGFQCGADDYIVKPFNMEVLLCRIRNIL 1207 >gi|153869352|ref|ZP_01998985.1| Response regulator receiver [Beggiatoa sp. PS] gi|152074125|gb|EDN71014.1| Response regulator receiver [Beggiatoa sp. PS] Length = 1610 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 KKV+IV+D+ N ++E + NG EALEL QH +++MDI + E+ G Sbjct: 1488 KKVLIVDDDPRNTFALATILEDKNMEVIAGENGHEALELLEQHEDIAIVLMDIMMPEMDG 1547 Query: 62 LEITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E +QI+ +++P+IA+TA AMKGD+ + + G Y+SKP+ + ++ + Sbjct: 1548 YEAMRQIRAQKNRFRRQLPIIALTAKAMKGDKTKCIEAGANDYLSKPVDTDKLISLMRVW 1607 Query: 120 I 120 + Sbjct: 1608 L 1608 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 62/114 (54%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ L +L +G+ L +G+ L++A Q+KP II+D+ L + G ++ Sbjct: 1223 LIVEDDRKFSTLILELARETGFKCLVAEDGITGLQMAEQYKPHAIILDVGLPNLDGWKVM 1282 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +Q+K + + + IPV ++AF +K G Y+ KP+++ ET +K Sbjct: 1283 EQLKNNPDTRHIPVHFISAFDQS---LEAKKMGAIGYLMKPVNMEQLGETFQKI 1333 Score = 57.1 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV DNE + + L+ + AL+ ++ D +I+D+ +++ +G Sbjct: 1342 KNVLIVVDNETHQQQILSLVSGENIQTSLAVTTITALQHIKETLFDCVILDMDIEQHAGG 1401 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ + ++ L ++PVI T + +EE + + K + S ++ Sbjct: 1402 QLLEHMQAIGGLCQVPVIVYTERDLTAEEEALLMRCADDLPLKSVSSPERLLD 1454 >gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] Length = 228 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 60/112 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED +L ++ +G++ ++ + EA R PD++I+D L S Sbjct: 1 MTPTILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEAESAIRAALPDLVILDWMLPGQS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 G+ + K+I+ D +E+P+I +TA + D+ + + G + YI+KP S Sbjct: 61 GVALAKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEM 112 >gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1442 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++VEDNE+N K+ ++E G +G EAL+ +Q D++ MD Q+ E+ G E Sbjct: 1212 RFLLVEDNEMNQKIIVKMLEKRGMYCDLACSGAEALKALQQKDYDIVFMDCQMPEMDGYE 1271 Query: 64 ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I++ E + ++A+TA AM+GD E+ + G + YISKP+ + I++Y Sbjct: 1272 TTARIRQMEGEERHTIIVAMTANAMEGDREKCLQAGMDDYISKPVDFQLLFNIIEQYTAR 1331 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQE 58 +V+IV+DN N K+ R +E + + ++ + +A+ + DV+I+D Q+ Sbjct: 1063 ARVLIVDDNSSNRKIIRTYLEDAQCLVEESDSAEKAITILLSASAVKSFDVVIVDFQMPA 1122 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ +K + I +I +T+ A KGD R ++ G Y++KP+ ++ I Sbjct: 1123 MNGHELAAALKAIPSTRAIHLIMLTSAAQKGDARRAKEHGFSGYLTKPVKRDELLQCISI 1182 Query: 119 YIG 121 +G Sbjct: 1183 VLG 1185 >gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED+E+ M + G+ + E L +AR+ +PD+I++DI L SG+ + Sbjct: 8 ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLPGESGIRV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E+ E ++ +I +TA + D+ R + G + Y++KP + + I ++ + Sbjct: 68 CQRIREEDE--DVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRS 124 >gi|332829569|gb|EGK02215.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC BAA-286] Length = 1347 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IVEDN + R + GY L +G+E ++L + + D+II DI + + G+ Sbjct: 1096 QTILIVEDNPDMQEFIRKNL-ILGYNVLLANDGIEGIKLLEKEEIDLIISDIMMPNMDGI 1154 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-- 120 E ++K IP+I +TA + + G +AYI KP S+S I+ + Sbjct: 1155 EFCNKVKNSLLWNHIPLIMLTAKTNIASKIEALETGADAYIEKPFSISFLSVQIRNLLES 1214 Query: 121 GEA 123 + Sbjct: 1215 RRS 1217 >gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 234 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K +++ ED + ++ + GY +G EA++LA+++ D++I+DI + + Sbjct: 1 MMK-ILLAEDEQQLSRVLETAMIHEGYHVDTAFDGQEAVDLAKENAYDLMILDIMMPVKT 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I++ VI +TA + D+ G + Y++KP SL + ++ Sbjct: 60 GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus thermophilus ND03] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED + ++ GY + NG E LELA + D+I++D+ L E+ Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++++ ++ ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 231 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + + + G+ +G EAL RQ +P ++++D+ L ++ G E Sbjct: 7 RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ +E +P++ +TA D R G + Y++KP SL + I+ + Sbjct: 67 VARRL--GAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRR 123 >gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED +L + GY + +G E A + D+I++D+ L ++ Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +++ SE + PVI +TA + + + K G + YI+KP ++ + + + Sbjct: 61 GFEIMSKLR--SEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Blautia hansenii DSM 20583] gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Blautia hansenii DSM 20583] Length = 235 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 70/125 (56%), Gaps = 7/125 (5%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQ 57 +K+V+I++D++ L + IE A+ +G+E L++ ++++ +II+D+ + Sbjct: 1 MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++G ++ K+I+E + IPV+ +TA + + D+ + G + Y++KP S++ + Sbjct: 61 YMNGFQVLKKIRE---VSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVH 117 Query: 118 KYIGE 122 I Sbjct: 118 SLIRR 122 >gi|163802258|ref|ZP_02196153.1| osmolarity response regulator [Vibrio sp. AND4] gi|159174063|gb|EDP58873.1| osmolarity response regulator [Vibrio sp. AND4] Length = 146 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNANNT--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter carbinolicus DSM 2380] gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 391 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + ++L ++ + G+ L +G E LE+ Q PD++++D + + Sbjct: 1 MSSRILVVDDEAIILQLATMVLTSRGFEVLTAHSGQECLEIVEQESPDLVLLDYMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + +++ + VI +T + + K G YI KP +E I+ + Sbjct: 61 GMTTLRHLRQ--AHPDTYVIMLTGKGSEQIAVDVMKAGAADYILKPFKNQDLVERIENVL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|329954319|ref|ZP_08295412.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328527847|gb|EGF54837.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1362 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ EDNE + ++ +E Y L NG +AL+L+ + PD+I+ DI + + GLE Sbjct: 1108 TVLLAEDNEEVRQYVKESLEPYFY-VLDVGNGKDALDLSLEKYPDLILSDIMMPGMDGLE 1166 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K+D +L IPVI +TA +M + G + YI KP S+ + + I + Sbjct: 1167 LCSRVKQDLQLGHIPVILMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINNIL 1223 >gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 +K+V++ ED + + + SGY + G +AL+ +++ DV ++DI + I Sbjct: 1 MKRVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+++ K+I+E + + +I ++A + + D+ G + YI+KP S+S + + Sbjct: 61 DGMQVCKKIREKNN--SVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAV 118 Query: 120 IGE 122 Sbjct: 119 CRR 121 >gi|295690575|ref|YP_003594268.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295432478|gb|ADG11650.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 1128 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 69/126 (54%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56 +++++VED+ N+ +++E G + RNG EA++ + + D+++MD+ + Sbjct: 1003 RRILVVEDDIRNVYSLTNVLEPRGAVVEIARNGQEAIDALGRAAQDPSEEIDLVLMDVMM 1062 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GL T+ I+ D ++P++ +TA AM D+ R + G Y++KPI + + + Sbjct: 1063 PVMDGLTATRAIRNDPRWSKLPILMLTAKAMPDDQARCIEAGANDYMAKPIDVDKLLSLV 1122 Query: 117 KKYIGE 122 + ++ Sbjct: 1123 RVWMPR 1128 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++V+ +VED++ + RD+ G+ L EA++LAR+ KP +++D+ L + SG Sbjct: 734 RRVLLVVEDDDTFASIVRDMSREQGFQCLVANTAEEAVKLAREFKPSAVVLDVGLPDESG 793 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 L + ++K D + IP+ ++A + + G Y+ KP+ E +K Sbjct: 794 LLVLDRLKRDDATRHIPIHVISA---EDHSQTALSLGAIGYLVKPVKRDDLTEVLKTL 848 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 46/94 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IVED+ + + L+ + + E LE ++ D +++D+ L + SG Sbjct: 857 RRVLIVEDDPVQREAVGKLLTSGDVETVGVGTAAECLEALKRETFDCMVLDLSLPDASGY 916 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 + + + ++ + PVI T + D+E+ + Sbjct: 917 SLLETLSQNGDHAFPPVIVYTGRDLSADDEQRLR 950 >gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 223 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D + + G+ ++ +GMEA+++ R+ + D+I+MD+ + E+ G Sbjct: 1 MYKILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVCREMEFDIIVMDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I++ PV+ ++A + D+ + G + Y+ KP S M + + Sbjct: 61 FSACKEIRK---FCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIVK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|220905533|ref|YP_002480845.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869832|gb|ACL50167.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 240 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + + +V+D+ + L ++ G+ NG +++ R+ +PD+I++D+ L G Sbjct: 5 QTICLVDDDREILDLLSGYLKKHGFEVSCAENGDALMDILRRDRPDLIVLDVMLPGQDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ IP+I ++A D + G + Y++KP + I+ + Sbjct: 65 MVCREVRKQWR---IPIIFLSALGESTDRVVGLELGADDYMAKPFEPRELLARIRSVLRR 121 >gi|218780745|ref|YP_002432063.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] gi|218762129|gb|ACL04595.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfatibacillum alkenivorans AK-01] Length = 368 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 65/117 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+ V+D E N++L ++ GY + +G EAL++ R+ PDV+++DI + ++G E Sbjct: 6 RVLAVDDEERNLRLMEAMLLPMGYEFFKAHSGEEALDIVRETPPDVVLLDIMMPGVNGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + + + IP+I VTA D + G + +++KP+ + + Sbjct: 66 VARRLKANEDTRIIPIIMVTALKEVDDRVKALDAGADDFLTKPVDKLELKARVANSL 122 >gi|317478508|ref|ZP_07937667.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316905322|gb|EFV27117.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1326 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN+ + + Y NG EAL++ ++ +++I DI + ++G E Sbjct: 1078 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1136 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +QIK + + IPVI +TA + + + G + YI KP + I+K+I Sbjct: 1137 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFI 1193 >gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D +KL + GY L +G+EALE+ + K D+II+D+ + ++ G+E Sbjct: 5 TILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVMMPQMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E++ P+I ++A + + D+ G + Y++KP S + IK + Sbjct: 65 ACMKIREEN---NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRR 120 >gi|300868512|ref|ZP_07113131.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333501|emb|CBN58319.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 431 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 64/114 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN N++L DL+ GY ++G ALE +PD+I++D+ + EI G E Sbjct: 11 TILVVDDNSENIELLADLLSGVGYQVAIAKSGKAALECLEFLQPDIILLDVMMPEIDGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +QIK + ++IP+I +TA + ++ + G YI+KPI + I+ Sbjct: 71 TCRQIKSNLANRDIPIIFMTALSDSVNKVKGLSMGAVDYITKPIEYEETLVRIR 124 >gi|270295515|ref|ZP_06201716.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274762|gb|EFA20623.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1336 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN+ + + Y NG EAL++ ++ +++I DI + ++G E Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1146 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +QIK + + IPVI +TA + + + G + YI KP + I+K+I Sbjct: 1147 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFI 1203 >gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 223 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|160891349|ref|ZP_02072352.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492] gi|156858756|gb|EDO52187.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492] Length = 1336 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN+ + + Y NG EAL++ ++ +++I DI + ++G E Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1146 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +QIK + + IPVI +TA + + + G + YI KP + I+K+I Sbjct: 1147 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFI 1203 >gi|34497034|ref|NP_901249.1| two-component hybrid sensor and regulator [Chromobacterium violaceum ATCC 12472] gi|34102891|gb|AAQ59255.1| probable two-component hybrid sensor and regulator [Chromobacterium violaceum ATCC 12472] Length = 1234 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ N+ + +E G NG ALE + D+++MDI + E+ G Sbjct: 1112 RRVLVVDDDPRNLFVITAALERHGAKLNSAVNGRRALEFLQHQSVDLVLMDIMMPEMDGY 1171 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + I+ + ++IPV+A+TA A+ + E+I G + Y+SKP+ + + + + Sbjct: 1172 QAIAAIRANPAWKDIPVVAITAKALPAEREKILATGADDYLSKPVDYDLLVARVAHW 1228 Score = 99.0 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ ++ + GY L ++G E L LA H P I++D+ L ++ G ++ Sbjct: 850 ILLIDDDPALGRMLVAMNRRLGYKTLLAQSGGEGLALAAAHGPAGILLDLGLPDMDGAQV 909 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 +IK L +IPV V+A + G ++ KP S + Sbjct: 910 LHEIKTRPALADIPVYIVSARDRDE---ALLHQGAIGFLRKPAS-DQLLAA 956 >gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4] Length = 679 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 4/126 (3%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K K++IV+D + +++ RD + Y+ + NG A+ A++ PD+I+MD+ + E+ Sbjct: 1 MKANKILIVDDQKFALQMLRDTLAPLHYVIEEATNGASAVSKAQEFMPDIILMDLVMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E ++IK+D IPVI +TA K + G + YI+KP S + I+ Sbjct: 61 DGVEACRRIKQDMHTATIPVIVITASKEKDNLLAAFAAGIDDYITKPFSDKELLARIRAN 120 Query: 120 I--GEA 123 + EA Sbjct: 121 LFKREA 126 >gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 256 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++ED +L + G+ +G E A QH+ D+I++D+ L ++G Sbjct: 15 TQRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNG 74 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I ++++ + P+I +TA + + + K G + YI+KP +S + + + Sbjct: 75 FQILEKLRSNGIT--TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMR 132 Query: 122 E 122 Sbjct: 133 R 133 >gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 238 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ G EAL L +++++DI L + G Sbjct: 11 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEALALLAGQGAELVVLDIGLPDRDGH 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 71 EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQ 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++ ED +L +E GY + +G +A+EL R + D+II+DI L S Sbjct: 1 MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI ++I+ ++ P++ +TA + D+ G YI+KP + + I+ + Sbjct: 61 GIEILRRIRSKD--KQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAAL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|315446672|ref|YP_004079551.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] gi|315264975|gb|ADU01717.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1] Length = 1171 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++ G L RNG L+ +H +++MDI + + G Sbjct: 1041 TVLLVDDDVRNVFSLGSALKRYGITVLPARNGQAGLDALGEHPEVGLVLMDIMMPVMDGY 1100 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+ + + +P++A+TA AMKGD ++ + G Y++KP+ + ++ ++ Sbjct: 1101 EAMRRIRAEPRWRHLPIVALTAKAMKGDRQKCLEAGASDYVTKPVDMDQLTSVLRVWLAG 1160 Query: 123 A 123 A Sbjct: 1161 A 1161 Score = 83.6 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ L +G+ ++ T +G AL LA+QH+P I +DI L +++G + Sbjct: 774 LIVEDDPTFARMLSGLAAEAGFDSVITASGRMALALAKQHQPAAITLDIGLPDMAGWVVL 833 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 +K D + IPV V+ D+ R + G ++KP +S Sbjct: 834 DVLKHDLATRHIPVNVVSG---TEDDGRGMRMGAIRTVNKPAEISDLRS 879 Score = 75.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 + V++ ED+ ++ + +IE+ G + L+ D +++D+ L +I G Sbjct: 893 RHVLVAEDDANQRQVVKHMIESDDIAITCVGTGAQVLDELSGGTSYDCLVLDLGLPDIDG 952 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 +++ ++IK+ + + +PVI T + E + A + K Sbjct: 953 IDLIERIKDQLKEKRLPVIVHTGRELTAAETERLENLAAAIVLK 996 >gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 233 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ +L + + +G A+ +P+++++D+ L I G Sbjct: 5 QKILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLPGIDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S+ +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCREIRTKSQ---VPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRR 121 >gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+ + + G+ G E L L +P+++++D+ L I+G Sbjct: 1 MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLMLPGING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++I+E ++P+I +TA D + G + YI KP I IK + Sbjct: 61 VQVCRRIRE---TSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++ A G E L+ R+ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|189464563|ref|ZP_03013348.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM 17393] gi|189438353|gb|EDV07338.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM 17393] Length = 1370 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +DNE + R + Y + NG EA E + PD +I D+ + E+ G+ Sbjct: 1103 RILIADDNEEIRRYIRQELTPD-YHITECNNGQEAFEQIIKDAPDALISDVMMPEMDGMT 1161 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I+++ + IPVI +TA + +GG +AYI+KP ++ + +TI+ I Sbjct: 1162 LCRKIRQNILVSHIPVILLTAKINEESNLEALEGGVDAYITKPFNIDVLKKTIRNVI 1218 >gi|21227170|ref|NP_633092.1| two-component response regulator [Methanosarcina mazei Go1] gi|20905506|gb|AAM30764.1| Two-component response regulator [Methanosarcina mazei Go1] Length = 123 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 58/122 (47%), Positives = 85/122 (69%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K+++IVEDN +NM+L DL+E G+ + +G++ALE + K D+I++D+QL ++ Sbjct: 2 MMKEILIVEDNPMNMELILDLLEFYGHRVTEAEDGIKALERLAEKKFDLILLDMQLPKMD 61 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++IK++ EIPVIAVTA AMKG EE + GC YISKPI + F I KY+ Sbjct: 62 GLEVLERIKKNPATSEIPVIAVTAHAMKGSEEHFIEMGCVDYISKPIDIHRFRSLIDKYL 121 Query: 121 GE 122 GE Sbjct: 122 GE 123 >gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRSEGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 233 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D++ ++ R L+ GY + RNG EALE H D+ I+DI + + G E Sbjct: 5 RILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYMNDH-IDLYILDIMMPYMDGYE 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI++ S P++ +TA + D+ + G + Y++KP S S + +K + Sbjct: 64 LCEQIRKHS---NAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAMLCR 119 >gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 876 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V++VEDN +N K+ R ++ G NG EAL+L Q D++ MD+Q+ E+ G Sbjct: 624 SARVLVVEDNVVNQKVARRMLSHLGCRVDVAGNGREALQLIDQVPYDLVFMDVQMPEMDG 683 Query: 62 LEITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T ++ + +P+IA+TA AM GD ER G + Y+SKPI E + +Y Sbjct: 684 FAATAAVRARPPTDGKRLPIIAMTARAMSGDRERCLAAGMDGYVSKPIVQEHLGEILLQY 743 Query: 120 IG 121 +G Sbjct: 744 LG 745 Score = 82.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 14/126 (11%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQLQ 57 V++V+D+ L + + + + A +G A+ R+ D++++D + Sbjct: 465 HVLVVDDHPLQCEALLEELRAADTHADAASSGRSAMIALRRAAAGDGKPFDIVLIDEDMP 524 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR----KGGCEAYISKPISLSIFM 113 E+ L + I+ D + ++ ++ R G + Y+ KP+ S + Sbjct: 525 EMDALTLAHHIRADPTISGTVLVFLS----TVQRRRGLTELADSGFQGYLRKPVHRSHLL 580 Query: 114 ETIKKY 119 + + Sbjct: 581 DVLATV 586 >gi|325981344|ref|YP_004293746.1| response regulator receiver protein [Nitrosomonas sp. AL212] gi|325530863|gb|ADZ25584.1| response regulator receiver protein [Nitrosomonas sp. AL212] Length = 134 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNELN ++ + L+E +G + NG EAL+ + D ++MD+Q+ + GLE Sbjct: 15 TILVVEDNELNQQVAQALLEYNGAVVSIASNGQEALDKLSKENFDCVLMDVQMPVLDGLE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ + +I +IA+TA A + + R G ++ KPI + I K++ Sbjct: 75 ATKMIRANPNWSKISIIALTANADQDYRDSCRSAGMNDFLVKPIDPEQLVIIISKWL 131 >gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 256 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V+IVED + ++ D + G R+G AL+L + +PD++I+D+ L +S Sbjct: 1 MRRRVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVMLPRLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ + PV+ ++A + + G + Y+ KP L + ++ + Sbjct: 61 GLDVCRRMRTAGD--RTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNML 118 Query: 121 GE 122 Sbjct: 119 SR 120 >gi|119471137|ref|ZP_01613669.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonadales bacterium TW-7] gi|119445793|gb|EAW27075.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Alteromonadales bacterium TW-7] Length = 920 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VEDN +N ++ ++E + +G+EAL+ + + D+I+MD Q+ + G Sbjct: 797 KHILLVEDNPINRQVIAKMLEPTAVTITMANDGLEALKTLKSNVFDLILMDCQMPNMDGY 856 Query: 63 EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T +I+E+ E + +P+IA+TA A + D++R G + +ISKP++ I + Sbjct: 857 ECTIRIRENEIGEDKRVPIIAITANAYEEDKQRCLDVGMDDFISKPVNSQGLYSVIANNL 916 >gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 239 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L ++ G+ +G AL+ AR +PD +I+D+ + + G Sbjct: 13 ARVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMPGMDGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D + P + +TA D+ G + Y++KP SL + ++ + Sbjct: 73 GLLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130 >gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1275 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++VED +N + ++E G+ NG E+L L + V++MD+Q+ + G Sbjct: 1155 SARILLVEDEPINQDVALAILEEIGWKIDVAANGRESLALVEANDYQVVLMDMQMPVMDG 1214 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L T+QI+ + +P+IA+TA A D +R + G ++SKP+ + + K++ Sbjct: 1215 LAATRQIRRLPGHETLPIIAMTANAFSEDRDRCVEAGMNDFLSKPVEPEVLYAMLLKWLR 1274 Score = 74.8 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 7/126 (5%) Query: 3 KKVMIVEDNELNM----KLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQL 56 K+ ++++D + +L R + A E +E A + D++++D+ + Sbjct: 1002 KRALVIDDMPVTRLVQSQLLRMIGLEGEGAAGGAVALQE-IEAAEREGKPYDLVLVDLLM 1060 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G E +++ Q+ I VTA + E + G + KP+S S+ + + Sbjct: 1061 PGMDGFETLARLRALPLRQQPLAILVTASSDPEIIEDATRMGFAEALLKPLSPSMLNDCL 1120 Query: 117 KKYIGE 122 +++ + Sbjct: 1121 VRHLAD 1126 >gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L] gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L] Length = 232 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|333030003|ref|ZP_08458064.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332740600|gb|EGJ71082.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 242 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED L + +E GY +G + L L + + +II DI L ISG Sbjct: 15 MIKILVVEDEVRVADLIKRGLEEVGYKVDAAYDGQQGLNLFQNNSYHMIISDIILPHISG 74 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 75 FELCQKIRLID--KNIPILMLTALGTTDDKLEGFDAGADDYMVKPFDFRELDARIKVLLK 132 Query: 122 E 122 Sbjct: 133 R 133 >gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10] gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10] Length = 1104 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++I +D +N+++ + + GY +G E L+ D+II+D+ + ISG Sbjct: 693 ARILIADDEPVNLQVLTNQLSLEGYETHLASSGEEVLDFIAAESFDLIILDLMMPGISGY 752 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ED L ++P++ +TA + D+ + G Y+ KP ++ I Sbjct: 753 EVCVSLREDFSLVDLPILMLTAKSGLDDKVIAFEAGANDYLVKPCERLELTSRVRTLIR 811 >gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 231 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D ++L + GY + NG++AL + + K ++I+DI + I GL++ Sbjct: 4 VLIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEKIHLVILDIMMPGIDGLQV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+++ IP+I V+A + D+ + G + YI KP S + +K I Sbjct: 64 CMKIRKE---YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118 >gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 842 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 4/124 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+ +N + +L+ G A NG EAL ++ D+++MD Q+ + G E Sbjct: 709 RVLLVEDHPINQEYAVELLNMIGITADIAENGREALTRLAKNHYDIVLMDCQMPVMDGYE 768 Query: 64 ITKQIKE----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 I+ + +P++A+TA A+ D++R G + +++KP S+ ++ ++ Sbjct: 769 TAMAIRAAEQSHPGSRRLPIVALTANALPADQQRCMDSGMDDFLAKPFSIQQLYASLARW 828 Query: 120 IGEA 123 + A Sbjct: 829 LPPA 832 >gi|325299930|ref|YP_004259847.1| two component transcriptional regulator, AraC family [Bacteroides salanitronis DSM 18170] gi|324319483|gb|ADY37374.1| two component transcriptional regulator, AraC family [Bacteroides salanitronis DSM 18170] Length = 915 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++++DN+ R L+E Y L+ NG E L+ A ++ PD II D+ + + G+E Sbjct: 668 TVLVIDDNQDVRDYVRLLLERE-YRVLEASNGQEGLQQAMKYVPDAIICDVMMPVMDGME 726 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPV+ +TA+ M + + + G ++YI KP S + ++ I Sbjct: 727 CCRRLKSEVQTSHIPVMMLTAYTMDEQKVQGYECGADSYILKPFSAKLLQVRLRNLI 783 >gi|320335459|ref|YP_004172170.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756748|gb|ADV68505.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 226 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IVED + GY + NG ALEL R +PD+I++D+ L E+S Sbjct: 1 MTHTVLIVEDEVRLADTLEAYLRRDGYRTERATNGRAALELWRAARPDLILLDLMLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ +Q++ + P+I +TA + D G + Y+ KP S + ++ + Sbjct: 61 GLDVARQVRAAG---DTPIIMLTALDEEVDRLVGLGLGADDYVVKPYSPREVVARVRAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|298385042|ref|ZP_06994601.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298262186|gb|EFI05051.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1312 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 63/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN F + L +G+EAL+L + + PD+I+ D+ + ++G Sbjct: 1057 SYTILVVDDNSDLTDFFSKALSEYFKKVLIASDGVEALQLVKSYTPDIIVSDVMMPRMNG 1116 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K IKED + IP+I +TA K + K G + Y++KP + + ME I+ + Sbjct: 1117 YELCKGIKEDLAVSHIPIILLTARDDKESQISGYKNGADGYLTKPFEIEMLMELIRNRL 1175 >gi|262118598|pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism gi|262118599|pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism gi|262118600|pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism gi|262118601|pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism Length = 122 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D+ + K+ ++ GY ++ NG ALE + PD+I++ I + + Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E E + IPVI +TA + DE G + KP S S F+E +K + Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 Query: 121 GE 122 E Sbjct: 121 NE 122 >gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271] gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271] Length = 247 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDN +L R+ + + G E + L +++ D++++D+ L +I G Sbjct: 27 MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 86 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K ++ S ++P+I +T + E + + G + YI+KP ++F++ ++ + Sbjct: 87 YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 143 Query: 122 EA 123 A Sbjct: 144 RA 145 >gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 230 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++D + L ++ GY + NG +ALE+ + + ++++DI + + Sbjct: 1 MNNNILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++E IP++ ++A D+ + G + Y+ KP + I+ + Sbjct: 61 GLEVCRRVREK---YNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ K+ + GY + + +EAL++ R D+II+DI L ++ G+E Sbjct: 6 KILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTTVDLIILDIMLPKMDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E + +P+I ++A D+ + G E YI+KP + M IK + Sbjct: 66 ACLKIREQYQ---MPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRR 121 >gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 669 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 77/120 (64%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N+K+ +++ GY +G +ALE +++ D+I+MDIQ+ E++G Sbjct: 550 KRILLVEDNEINIKITCEMLNRLGYEYEYVYDGKQALEKLKENTFDLILMDIQMPELNGY 609 Query: 63 EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ I+E + + +IA+TA++M GD ER + G + YISKP ++ I ++I Sbjct: 610 DTTRIIREKEIKTKEHVNIIAMTAYSMNGDRERCIEVGMDDYISKPFDMNKLKNVILRFI 669 >gi|319940603|ref|ZP_08014946.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis 3_1_45B] gi|319805969|gb|EFW02727.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis 3_1_45B] Length = 241 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 +++V+D + +L +E +GY + +G+ ALE+ + P+++I+D+ + E+ G Sbjct: 8 ILVVDDESMIRRLVLANLERAGYDVMSAADGIRALEVYAKAPVKPNLVILDVMMPEMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++++E +++PVI +TA + R G + Y+ KP S+ + I+ + Sbjct: 68 ECARRLREK---KDVPVIFMTAKTDSASKLRGFDLGADDYVCKPFSMEELLARIRAILHR 124 Query: 123 A 123 + Sbjct: 125 S 125 >gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] Length = 231 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I +DN + G+ + +G EAL R+ P VI++D+ + ++ G Sbjct: 1 MEKMLIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRREAPAVILLDVMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+E+S +P+I +TA ++ G + YI KP S M ++ + Sbjct: 61 FEVCRQIREESA---VPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726] gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 268 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 >gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ ++ G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 268 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 >gi|171060877|ref|YP_001793226.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170778322|gb|ACB36461.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1110 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N + +L+ +G+ NG+EAL D+I+MD+Q+ E+ GL Sbjct: 747 ARLLLVEDNPVNQDVALELLRAAGFAVDVASNGVEALAQVHGRSHDLILMDMQMPEMDGL 806 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+ +P++A+TA A D G +I+KP+ + + +++ Sbjct: 807 EATRLIRALPGCATVPILAMTANAFGDDRAACLAAGMNDHIAKPVDPAHLYAVLLRWL 864 >gi|167765067|ref|ZP_02437180.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183] gi|167696695|gb|EDS13274.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183] Length = 1350 Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVEDN+ + R + Y NG AL + +++ PD+II DI + E+ G Sbjct: 1089 QKILIVEDNDELREYLRRTL-AENYHVQVCSNGKSALCIVKEYFPDLIISDIMMPEMRGD 1147 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ +++K D + IPVI +TA + + G + Y+ KP ++ I TI + Sbjct: 1148 ELCQKVKNDIDTSHIPVILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLAN 1207 Query: 122 EA 123 A Sbjct: 1208 RA 1209 >gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED L R + G+ +G +A+ A + DVI++D+ L + G E Sbjct: 2 RVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ ++A D R G + Y+ KP S I+ I Sbjct: 62 VCRRLRAAGRWS--PVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRR 118 >gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 248 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D E ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 22 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 82 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 137 >gi|218129056|ref|ZP_03457860.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697] gi|217988691|gb|EEC55010.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697] Length = 1458 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + + +E + +G+E L++ H PDV++ D + + G+E+ Sbjct: 1200 VLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHHPDVVVTDQMMPCMDGMEM 1258 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ D ++ IPVI +TA + + + G AYI KP S + I++ +GE Sbjct: 1259 LKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1316 >gi|220933691|ref|YP_002512590.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] gi|219995001|gb|ACL71603.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7] Length = 380 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D E+N + +E G+ LQ +G +AL++ R+ D +++D+ ++ + G Sbjct: 26 RTLLVVDDQEVNRLILARHLELLGHRVLQADSGPQALQILREQSVDGVVLDVVMRGMDGY 85 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++IK D E IPV+ VT + D R + G + ++SKP+ I+ + Sbjct: 86 EVCRRIKADPETWFIPVVMVTVLNNQADRVRAMEAGADEFLSKPVYPEELSARIRSLMR 144 >gi|197122714|ref|YP_002134665.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] gi|196172563|gb|ACG73536.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. K] Length = 434 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D ++ ++ Y +G EAL+LAR PD++++DI + + G E+ Sbjct: 133 LVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEVL 191 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++++D +IPVI V+ + R G Y+ KP S +++ + Sbjct: 192 QRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLR 247 >gi|217976612|ref|YP_002360759.1| response regulator receiver protein [Methylocella silvestris BL2] gi|217501988|gb|ACK49397.1| response regulator receiver protein [Methylocella silvestris BL2] Length = 123 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 78/122 (63%), Positives = 103/122 (84%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++IVEDNELNMKLF DL+E GY +QTR+G+EA+ L R+H PD+I+MDIQL E+S Sbjct: 1 MQKTILIVEDNELNMKLFNDLLEAHGYKTVQTRSGLEAVGLTREHMPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ +K+D L+ IPVIA+TAFAMKGDEE+IR+GGCEAY+SKPIS+ F+ET++ Y+ Sbjct: 61 GLEVTQWLKQDEALRHIPVIAITAFAMKGDEEKIRQGGCEAYLSKPISIVKFLETVRSYL 120 Query: 121 GE 122 E Sbjct: 121 NE 122 >gi|150004693|ref|YP_001299437.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|160892059|ref|ZP_02073062.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492] gi|149933117|gb|ABR39815.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|156858537|gb|EDO51968.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492] Length = 1356 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN + + ++ + Y LQ +G E L LA ++ P++I+ DI + ++G+ + Sbjct: 1097 LVVEDNRDIREYIANELQDT-YRILQADDGKEGLALALKYTPNIIVSDIMMPNMNGIALC 1155 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IK D IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1156 KAIKSDMNTSHIPVILLTAKDSIQDKEEGYNSGADSYLTKPFSAKLLRSRINNLL 1210 >gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 263 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+E+ K +E GY +G+ LEL R + D++++D+ L + G+ Sbjct: 37 TILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQHDLLLLDVMLPALDGIG 96 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E P++ ++A D + G + Y+ KP+ ++ + I+ + A Sbjct: 97 LCRRIRE---TSTAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRA 153 >gi|315182011|gb|ADT88924.1| response regulator receiver protein [Vibrio furnissii NCTC 11218] Length = 315 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N++L L++ Y L +G +AL + R+HKPD+I+MD+ + +++G + Sbjct: 17 TVLVVDDQPTNIQLIYQLLKKE-YDVLMATSGQQALAVCREHKPDLILMDVLMPDMNGWD 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D ++ IPVI VTA + DE G ++ KPI+ + ++ ++ Sbjct: 76 TCQTLKRDPDIATIPVIFVTALTDQDDENACWDAGAVDFLQKPINANTLKHRVRAHL 132 >gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 235 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L + G+ +G EAL++AR+ +PD I+D+ + + G E Sbjct: 9 KVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMPGMDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ D + PV+ +TA D G + Y++KP SL + ++ + Sbjct: 69 LLSKLRADGL--DGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 125 >gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 813 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++ +ED+E KL ++ Y +G L D+I++D L +++G+E Sbjct: 2 KILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGIE 61 Query: 64 ITKQIKEDSEL-----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++++ + L Q+ P++ +T + G + Y+ KP+ + I+ Sbjct: 62 LCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIRA 121 Query: 119 YIGE 122 + Sbjct: 122 LLRR 125 Score = 88.3 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 13/108 (12%) Query: 26 GYIALQTRNGMEALELARQHKPDVIIMDIQLQE-------------ISGLEITKQIKEDS 72 GY + E+ Q +PD++I+DI+ + +G+E+ + I+ D Sbjct: 528 GYQLTLLSEPQQFWEILEQSEPDLLILDIKFSKPASSDQEKERSSFFNGIELCQVIRNDL 587 Query: 73 ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +PVI ++ +R G + ++SKP+ S + ++ + Sbjct: 588 RWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVASELLIRVRSRL 635 Score = 61.7 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL--QEISG 61 ++I+E + +L T G EA +L + +V+++D+ E +G Sbjct: 381 TLLILESDMTLRQLLVKEALTWGIETQVATTLDEAEKLLNSGQCNVMLLDLNFYDSEPTG 440 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+ + + + +P I +TA + G ++ KP+ S + + + + Sbjct: 441 LQFLATL--NRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTLR 498 Query: 122 EA 123 +A Sbjct: 499 QA 500 >gi|189464019|ref|ZP_03012804.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM 17393] gi|189438592|gb|EDV07577.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM 17393] Length = 1399 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L L+ Y +G EALE+ D+I+ D+ + + G+E Sbjct: 1142 TLLLVEDNEDLLALMVKLLGAE-YDICTATDGKEALEVVESADIDLIVSDVMMPVMDGIE 1200 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K + + IP+I +TA + + D + G +A+I+KP +LSI I + Sbjct: 1201 FCKAVKGNFDTSHIPLILLTAKSKEEDRVEAYESGADAFIAKPFNLSILHARIGNLL 1257 >gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D L +++ G+ + G +AL+ + + D+ I+D+ L +IS Sbjct: 1 MKANILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +I+ + PV+ +TA D+ G + Y++KP + + +K + Sbjct: 61 GFTLCGEIRRE---HHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + L+ GY +G++AL ++ D++++D+ L +SG Sbjct: 1 MTRILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLPGVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ +P+I +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRELR---VKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104] gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22] gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322] gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis CH188] gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG] gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis] gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104] gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22] gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis CH188] gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG] gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137] gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017] gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027] gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141] gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244] gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012] gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031] gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043] gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312] gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645] gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302] gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341] gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342] gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346] gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B] gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630] gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A] gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62] gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++ +D++ ++L I GY ++ +G EAL D++I+DI + + G+ Sbjct: 2 KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+++++S+ IP+I +TA D+ + G + Y++KP + M +K + Sbjct: 62 EVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118 Query: 123 A 123 + Sbjct: 119 S 119 >gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 226 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E L+ GY T G EALE + D++++D+ L + G Sbjct: 1 MTRILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRQLRTRS---SVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|113474731|ref|YP_720792.1| response regulator receiver modulated serine phosphatase [Trichodesmium erythraeum IMS101] gi|110165779|gb|ABG50319.1| response regulator receiver modulated serine phosphatase [Trichodesmium erythraeum IMS101] Length = 378 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++++D+ +L R ++ GY NG E + A+ +P +II D + ++ Sbjct: 1 MIYKILVIDDDTTVQELLRRVLGKQGYTVTVASNGEEGFKQAQLLQPALIICDWIMPRLT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++K S+L I +T+ D + G + +ISKPI+++ ++ + Sbjct: 61 GIEVCRKVKASSDLSTTFFILLTSLGSVQDLVKGLDAGADDFISKPININEMKARVRAGL 120 Query: 121 G 121 Sbjct: 121 R 121 >gi|315646786|ref|ZP_07899901.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315277716|gb|EFU41040.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 522 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 K++++VED+ N+ ++E+ + T NG EALE+ ++ H D+++MDI + E+ G Sbjct: 402 KRILLVEDDIRNIFSLVSVLESYKLNVVFTENGREALEMLQKDHNFDLVLMDIMMPEMDG 461 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K I+E + ++P+IA+TA AMK D +R G YI+KPI + + +K ++ Sbjct: 462 YETMKAIREIPQFDKLPIIALTAKAMKEDRQRCIDAGASDYITKPIDVEKLLSLLKVWL 520 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 4 KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ I+ED+ K+ D++ + + G L LA +KPD I++DIQL I G Sbjct: 134 RILLIIEDDIHFAKILLDIVRAHKFKGIVALKGDRGLALAHAYKPDAIMLDIQLPVIDGW 193 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 I +++K+ +L+ IPV ++ ++ G AY+ KP + + + I+ + Sbjct: 194 TILERLKQQPDLRHIPVHVISVVDEP---QQGLSMGAMAYLKKPANKNQIEGALAHIETF 250 Query: 120 IGE 122 + Sbjct: 251 VDR 253 Score = 77.9 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + +LI I G EAL + D +++D+ L +I+G Sbjct: 256 KRLLIVEDDVILRSSMVELIGHDDVIITAVSTGAEALRELGREHFDCMVLDLGLADITGF 315 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI--------FME 114 E+ +I++ LQ++P+I T + EE K E+ I K + F+ Sbjct: 316 ELLDRIRQTKHLQQLPIIIYTGKELDMKEEIELKKYAESIIIKNVKSQERLFDETALFLH 375 Query: 115 TIKKYIGE 122 ++ + E Sbjct: 376 RVEANLPE 383 >gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D + + L + G+ + +G AL LAR +PD++I+D+ L + G+ Sbjct: 4 ATILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVMLPGLDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++ +++ + V+ +TA + D+ G + Y++KP S + +K + Sbjct: 64 EVCRRLHQETA---VYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120 >gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597] gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597] Length = 231 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALE+ ++ D+II DI + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + + P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 238 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ ED+ +L R +E + G AL R +PD++I+D+ L ++ Sbjct: 10 MCANIVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVMLPGMN 69 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+ S ++P++ +TA + + D + G + Y++KP S M ++ + Sbjct: 70 GLTVCRTIRASS---DLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLL 126 Query: 121 GE 122 Sbjct: 127 RR 128 >gi|256393335|ref|YP_003114899.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359561|gb|ACU73058.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 241 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED+ +L R +++ GY + A PD++++D+ L Sbjct: 1 MSAYILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVEDCPPDLVVLDLMLPGAD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I + ++ E PV+ VTA + + D G + Y++KP S + I+ + Sbjct: 61 GLTICRWLRRRGET---PVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] Length = 224 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I+ED E + + +E +GY + +G+E +E R +KPD++++D+ L +I Sbjct: 1 MSKMILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRANKPDLVLLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++++S +P+I +TA + + + + YI+KP S+ + M+ I+ + Sbjct: 61 GFAVCEILRKESR---VPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 248 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 24 KILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 84 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 >gi|88607360|ref|YP_505143.1| response regulator PleD [Anaplasma phagocytophilum HZ] gi|88598423|gb|ABD43893.1| Response regulator/GGDEF domain protein PleD [Anaplasma phagocytophilum HZ] Length = 456 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D N+KL + + Y + +G EA+ +A +H+PD+I++D+ + + Sbjct: 1 MTAKILIVDDLPSNIKLLQAKLTAEYYTVITATSGPEAIRMAEEHQPDLILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K ++ + + IP++ VTA + G + ++ KPI IK Sbjct: 61 GYETCKNMRTNPAIAYIPIVMVTALDNTTSNRVNGLSAGADDFLIKPIDDVALFSRIKSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 53.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 49/116 (42%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I++++++ + +L++ S + + + K D++I+D+ GL Sbjct: 158 KILIIDEDKIRAESINNLLQESFQETTILSDPTQNINFTNAAKYDLLIIDMHFAG-DGLR 216 Query: 64 ITKQIK-EDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSIFMETIK 117 + + + + E + ++ + + + + G YI PI + + + Sbjct: 217 LCSEFRNSNEESRYTSILLLIDESEDTNILHKAFDIGISDYIMVPICNNELVARVN 272 >gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E +L +D +E SG+ +G + A + D+ I+D+ L I G Sbjct: 1 MSRILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I KQI+E + P+I V+A D+ G + Y++KP S S + +K ++ Sbjct: 61 FAICKQIREK---KNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides sp. 3_1_23] Length = 1353 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE + ++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides sp. D2] Length = 1353 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE + ++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|322420796|ref|YP_004200019.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127183|gb|ADW14743.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 377 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K+ VMIV+D N+++ + + Y +G +ALEL R KPD+I++DI + + Sbjct: 1 MKRQTVMIVDDTPANIEILSESLGDD-YELFFATSGADALELIRADKPDLILLDIMMPGM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +K D ++IP+I VTA + E + + G Y++KPIS I +K + Sbjct: 60 DGYELCTILKGDPTTRDIPIIFVTAMIEEEQEIKGLELGAIDYLTKPISPHIVRARVKNH 119 Query: 120 I 120 + Sbjct: 120 L 120 >gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1353 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L+ NG EALE + ++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 1205 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N +L L+E G+ NG EA++ + + D+I+MD+Q+ + G E Sbjct: 955 RVLLVEDNPVNQRLASRLLEKLGHGVTLASNGQEAVDWYGREQFDMIMMDVQMPFMDGFE 1014 Query: 64 ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T I+ E + P+IA+TA AM+GD ER + G + Y+ KPI L + + Sbjct: 1015 ATSAIRALELGGSRRQPIIAMTAHAMRGDRERCLEAGMDGYVPKPIMLDELAAEMHRV 1072 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQEI 59 V++V+D+ N +L D + G + T GM AL+ R P + ++D ++ ++ Sbjct: 807 VLVVDDHPTNRRLMYDTLRQFGARPVVTEGGMSALQYLHGAQLRGELPQLALIDGEMPQM 866 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 SG+E+ + ++ + ++I I +T+ + +R G + KP+ S + + Sbjct: 867 SGMELMRYMQHQAAWRDIACIMLTSQWDPAMQGELRLQGVVHCLQKPVEASRLLRVM 923 >gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D+ L + +E G R+G E L + + D++++D+ + G Sbjct: 5 STHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ S +P+I +TA + D + G + Y++KP + + IK + Sbjct: 65 LTLCRELRAKSC---MPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|78223985|ref|YP_385732.1| response regulator receiver domain-containing protein [Geobacter metallireducens GS-15] gi|78195240|gb|ABB33007.1| response regulator receiver domain protein (CheY-like) [Geobacter metallireducens GS-15] Length = 122 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 77/120 (64%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I+EDNE N+ L ++E GY +G E + LA +P +I++DIQL E+ Sbjct: 1 MNNKILIIEDNEQNLYLLSFILEKHGYEVFAAMDGFEGIALADSVRPTLILLDIQLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ + L ++P++AVT++AM GD E+ GC YI KPI+ FM+ +K+++ Sbjct: 61 GYDVARKLRANPSLADVPIVAVTSYAMAGDREKALIAGCSGYIEKPINPDTFMQQVKEHL 120 >gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 235 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++++D L ++ Y+ NG AL+L PD++++D+ L + SG Sbjct: 1 MKKILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+I + + +PVI ++A D+ + G E Y++KP + IK + Sbjct: 61 YDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + +L + +E Y+ + NG +A+++A ++ D+I++D+ L ++ G++ Sbjct: 7 HLLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLMLPKMDGIQ 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E + P++ +TA + + G + YI KP S + + + Sbjct: 67 AAEKIRES---KNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKR 122 >gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++++D+ + + ++ +E G+ +G E A + D+I++D+ + +++G Sbjct: 8 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + I+ + + PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 68 IDALRAIRAE---KNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|315500125|ref|YP_004088928.1| response regulator receiver protein [Asticcacaulis excentricus CB 48] gi|315418137|gb|ADU14777.1| response regulator receiver protein [Asticcacaulis excentricus CB 48] Length = 122 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 86/122 (70%), Positives = 105/122 (86%), Gaps = 1/122 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M KKV+IVEDNELNMKLF DL++ GY LQT G+ AL LAR+H+PD+I+MDIQL EI Sbjct: 1 MSAKKVLIVEDNELNMKLFHDLLDAQGYETLQTGEGLSALSLARKHRPDLILMDIQLPEI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGLE+TK +KED EL IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F++T+++Y Sbjct: 61 SGLEVTKWLKEDDELSHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLDTVRRY 120 Query: 120 IG 121 +G Sbjct: 121 LG 122 >gi|218678690|ref|ZP_03526587.1| response regulator receiver protein [Rhizobium etli CIAT 894] Length = 123 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 94/123 (76%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+VMIVEDNELNMKLFRDLIE SGY +QTRNGMEAL+LAR+++PD+I+MDIQL E+S Sbjct: 1 MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKYRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+ETIK Y+ Sbjct: 61 GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIETIKTYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED+E + RD GY +G LEL D++++D+ L + G Sbjct: 1 MPKILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGADIVLLDVMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I + + E +P++ +TA + D R + G + Y+ KP S+ + ++ ++ Sbjct: 61 YSICEAARR--EGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|171914500|ref|ZP_02929970.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I ED+ +++ G+ + +G EA EL + +PD + +D+ + + G E Sbjct: 2 KILIAEDDSFTRAALCEVLSAEGFGVVPAADGREAWELFKSQRPDFVCLDVMMPHLDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ D + +P++ +TA + + D + G + Y++KP + + I+ Sbjct: 62 VCRRIRRDDDT--VPILFLTAKSEEIDAVLGLELGADDYMAKPFGVREILARIRAITRR 118 >gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 240 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 74 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 >gi|315180653|gb|ADT87567.1| Response regulator [Vibrio furnissii NCTC 11218] Length = 241 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++V+D+ +L + + SG+ +G AL PD++++D+ L G Sbjct: 5 HILVVDDDIEICELLDEYLSKSGFSVATVSDGR-ALAQYLTDHGYPDLVLLDVMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ DS +P+I +TA + + D+ G + YI+KP S M IK + Sbjct: 64 FTLCQKIRRDS---NVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|298675227|ref|YP_003726977.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] gi|298288215|gb|ADI74181.1| response regulator receiver protein [Methanohalobium evestigatum Z-7303] Length = 352 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D +L + + Y + +G +A+++ Q PD+I++DI + ++ G E Sbjct: 228 KILIVDDEPDIPELIKLSLSNEPYDFIVAYSGEQAVDMTLQELPDLILLDIMMPDMDGYE 287 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ +D ++I +I V+A D+ + + G + YISKP IK + Sbjct: 288 VVEELNKDKSTRDIAIIMVSAKTRVEDKLKGMELGIDDYISKPFDERELNARIKMVMKR 346 >gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 364 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ L D ++ +GY L +G AL+ + PD +++D + + G E Sbjct: 23 VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLARITPDAVLLDALMPGLDGFET 82 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IK D + +PVI +TA + + G Y++KP+ S I ++ + Sbjct: 83 CRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141 >gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto BEST195] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED+ ++ + G+ + +G E + L +Q D++++DI L +++G Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E S +PV+ ++A D+ G + YI+KP S+ +K I Sbjct: 61 MDFLKIIREKS---NVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|289670369|ref|ZP_06491444.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 1057 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 937 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 996 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 997 TAMRQIRANLQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1056 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + DL + + N EAL LA + +P I++DI L + SGL + Sbjct: 671 ILAVEDDTRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 730 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A + + G Y+ KP + + I++ Sbjct: 731 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRDLLAGAIRQL 782 Score = 73.6 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + L+ + + EA+E D ++ D+ L + SG Sbjct: 791 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMEQLAGSTFDCMVTDLALPDGSGY 850 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 851 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 910 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 911 SVEASLPSDQQRLLREA 927 >gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED + +L RD +E+ G+ G L+ A D+II+D+ L ++ G Sbjct: 1 MKSILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI +QI++ + +PV+ VTA D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICRQIRQ---TKNVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|38234503|ref|NP_940270.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 236 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++L + ++ G+ ++G+EALE AR +PD I+D+ + + G E Sbjct: 10 RVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMPGMDGYE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ D E PV+ +TA G + Y++KP SL + ++ + Sbjct: 70 LLPKLRADGF--EGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 >gi|291568744|dbj|BAI91016.1| two-component response regulator (OmpR subfamily) [Arthrospira platensis NIES-39] Length = 253 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L +E +GY +G+ LA Q PD+II+D+ L ++ G Sbjct: 1 MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQALALQLLPDLIILDLMLPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ D EIPV+ +TA D+ G + Y++KP L + ++ + Sbjct: 61 FTVCQRLRRDERTGEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus ES-1] Length = 908 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VEDNE+N ++ ++L+E G NG EA+ + + D ++MD+Q+ + G+ Sbjct: 651 AHLLLVEDNEINQQVAQELLEGFGIKVAVAENGEEAIARLNEEQFDGVLMDMQMPVMDGI 710 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ + +P+IA+TA ++ G +I KP+ + T+ K++ Sbjct: 711 SATREIRKNPKFATLPIIALTANVYVSEQNAFLAAGMNDHIGKPLDPDRLVATLAKWLRP 770 Query: 123 A 123 A Sbjct: 771 A 771 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 60/128 (46%), Gaps = 18/128 (14%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD-----VIIMDIQLQE 58 +V+ V+D+E ++ + ++ +E+ + NG AL R+ D + I+D ++ E Sbjct: 501 RVLAVDDSENSLSILKNYLESFSFDVSVASNGRSALSTVRKANKDGKPFSLAILDWKMPE 560 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAF-------AMKGDEERIRKGGCEAYISKPISLSI 111 + GLE+ +++ +E + P I + A A++ ++ + + KP + + Sbjct: 561 MDGLELARELHAMTEAENKPKILLIAGYGQNGTPALRNNKV------VDGVLEKPFNQNK 614 Query: 112 FMETIKKY 119 + I + Sbjct: 615 LFDAISRI 622 >gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 635 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 58/116 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L++ L+E SG+ NG EALE + P +II D + E+ G+E Sbjct: 325 HILLVDDDRAIRLLYKALLEKSGHSVTTANNGREALESVKASPPQLIISDWMMPEMDGIE 384 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++++++ + I V VTA + G Y+SKPI+ + ++ Sbjct: 385 FCRELRKNPDWHRIYVFIVTAQESTEKLIEAFEAGANDYLSKPINPKVLAARLRSA 440 >gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM 44928] Length = 1588 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 71/120 (59%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++++D+ N+ ++E G + +G++ ++ + +VI+MD+ + E+ G Sbjct: 1468 RSVLVIDDDARNLFALTGMLEMHGMRVVDAEDGVKGIQALQNDPRIEVILMDVMMPEMDG 1527 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I+ E ++P+IAVTA AM GD E+ G Y++KP+ ++ +E+I++ +G Sbjct: 1528 YEATARIRTMPEHADLPIIAVTAKAMNGDREKSLAAGANDYVTKPVDAAVLIESIQRVLG 1587 Score = 38.6 bits (90), Expect = 0.34, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 22/138 (15%) Query: 2 LKKVMIVEDNELNMKLF------RDLI---ETSG----YIALQTRNGMEALELARQHKPD 48 +++++VED + DL+ E G EA + Sbjct: 1304 SRRLLVVEDRARGLLSLVAESAAEDLLAGRERLGPQARVQIRTAVGAQEAAAMLAAEPHH 1363 Query: 49 VIIMDIQLQEISGLEITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107 +++++ + + G + Q + D L IP++A ++ D+ER+ + E Y P+ Sbjct: 1364 CVVLELDMAQ-DGAALFLQARTADPALHSIPILAHHNRTLRSDQERLLRAHAELY---PL 1419 Query: 108 ----SLSIFMETIKKYIG 121 SL E I ++G Sbjct: 1420 ELLPSLDELRERIVLHLG 1437 >gi|253699609|ref|YP_003020798.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774459|gb|ACT17040.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 383 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K+ VMIV+D N+++ + + Y +G +ALEL R KPD+I++DI + + Sbjct: 1 MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADKPDLILLDIMMPGM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +K D ++IP+I VTA + +E + + G Y++KPIS I +K + Sbjct: 60 DGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKNH 119 Query: 120 I 120 + Sbjct: 120 L 120 >gi|189464649|ref|ZP_03013434.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM 17393] gi|189436923|gb|EDV05908.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM 17393] Length = 1344 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN + + Y + ++G E EL + P+VI+ DI + + G+E+ Sbjct: 1094 VLVVEDNSDIREYIKSSFADI-YEVITAKDGQEGWELTQARIPNVIVSDIMMPIMDGVEL 1152 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++KED IPVI +TA D+E G +AY++KP S + I + Sbjct: 1153 CKKVKEDMRTSHIPVILLTAKDSLHDKEEGYASGADAYLTKPFSAKLLHSCINNLL 1208 >gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] Length = 225 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 70/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ ++ + +E GY L NG++ + R+ PD+I++DI L ++ G Sbjct: 1 MKTILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIMLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+++SE IPVI ++A + D+ + + + YI KPISL I M+ I+ I Sbjct: 61 YTVCEMIRQESE---IPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1199 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN N + R ++E G+ + NG EALEL D+++MD Q+ + G E Sbjct: 945 RLLLVEDNATNQLVARTILEKLGHTVVLAGNGKEALELLHMIPVDLVLMDCQMPVMDGFE 1004 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ ++ +PV+A+TA A D ER R G + Y++KP+ L+ + + + Sbjct: 1005 ATRRIRAGEAGEQNRLLPVLAMTAHAFAEDRERSRAAGMDDYLTKPVQLTTLSKAVTTWQ 1064 Query: 121 GE 122 G Sbjct: 1065 GR 1066 >gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630] gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile] Length = 233 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + L ++ G+ + G EALE D+ I+DI L +I Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA D+ G + YI+KP + + +K + Sbjct: 61 GFHICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+ L + +GY +G A+ A +PD+I++D+ L + G Sbjct: 15 TVLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDTDGFR 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +T++++ PV+ +TA A D G + Y++KP + + ++ + A Sbjct: 75 LTRELRAQGVY--TPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRA 132 >gi|297183277|gb|ADI19415.1| signal transduction histidine kinase [uncultured Pseudomonadales bacterium HF0500_12O04] Length = 632 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++VEDN++N + ++ + GY +G +A+ A + I+MD +L I+G Sbjct: 514 RKVLLVEDNQVNQTVIEAMLTSLGYEVSLVSDGAQAIHFANTERFAAILMDCRLPIINGY 573 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI++ + +P+IA+TA A++GD E + G Y++KP + + +++++ Sbjct: 574 EATRQIRQLPGCRALPIIALTANALQGDRETCLQAGMNDYLAKPFKRADLEQILQRWV 631 >gi|302337704|ref|YP_003802910.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634889|gb|ADK80316.1| histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 1230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED +N L++ G+ NG EA+ LA + +I+MD+ + EI GLE Sbjct: 1112 KILVCEDEGINRFYLGTLLQNKGFAVDVAANGREAVRLAESNDYSLILMDLGMPEIDGLE 1171 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I+ +P+IA+TA + K D ++ R+ G + +++KPI + + I+ +IG+ Sbjct: 1172 ATRMIRAQGIT--VPIIALTAHSYKEDIDKCREAGMDDFLAKPILEPLLFKKIRTWIGD 1228 >gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella buccae D17] Length = 1340 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED+ GY + NG E LE ++H +I+ D + + G E Sbjct: 1096 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAE 1154 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP++ +TA + + G +AYI KP S+ I+ + Sbjct: 1155 FCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNML 1211 >gi|212691048|ref|ZP_03299176.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855] gi|212666280|gb|EEB26852.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855] Length = 1350 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+E + + + Y L++ NG EALE PD++I D+ + E+ GL Sbjct: 1091 KVLVVEDDEDIRRYICRELASD-YHTLESCNGKEALESIFNKTPDLVISDVMMPEMDGLT 1149 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IK++ L IPVI +TA + D + G +AY++KP + I +T I Sbjct: 1150 LCHKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207 >gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 1022 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 69/118 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +N +L L++ G+ NG A+ L ++ +P++I MD+ + + G + Sbjct: 810 RILVVEDHLVNRQLLVTLLKEVGFQVKSAENGQAAIALWQKWQPELIFMDMHIPIMDGYQ 869 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+QIK+ + P+IA+TA A E GC+A+ISKP L +E I +Y+G Sbjct: 870 ATRQIKQSNFATIPPIIAITASAFAHKREECLTAGCDAFISKPFHLEEILEIISQYLG 927 >gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 225 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +IVED+EL ++ G+ ++G +AL+ A+ + D+II+D+ + +I Sbjct: 1 MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ KQ++ SE IP+I +TA + D+ + G + YI+KP S + +K + Sbjct: 61 GVKVCKQLRLQSE---IPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 248 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 84 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 >gi|56552073|ref|YP_162912.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241762025|ref|ZP_04760109.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|4511977|gb|AAD21537.1| aerobic respiration control protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543647|gb|AAV89801.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241373491|gb|EER63078.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 241 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +MIVED+ L +++ +GYI +G E E + D+I+MD+ L +G Sbjct: 3 SQTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++T++++ +S+ IPVI ++A + D + G + YI KP + ++ + Sbjct: 63 LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122 Query: 122 EA 123 + Sbjct: 123 RS 124 >gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51] gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I++D ++ + G+ +GM + LA+Q P ++I+DI + + G E Sbjct: 8 KILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMPGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K+ + +I +TA D + G + Y++KP S + I I Sbjct: 68 VCRMLKKSENVS---IIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIR 122 >gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED ++ + +E G+ L NG +ALE AR+ +P ++++D L S Sbjct: 1 MEMTLLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWMLPGKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K++++ S +I VTA + + D+ + G + YI+KP SL I+ + Sbjct: 61 GIEVCKELRQSSACG---IIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|329963860|ref|ZP_08301202.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328527113|gb|EGF54119.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 1342 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++DN + L ++ + Y + N E L++ ++ PD+II D+ + G+E+ Sbjct: 1085 ILVIDDNAEILTLLQEALSE--YKVVTATNSEEGLDMLKKEYPDLIITDVMMPGTDGIEL 1142 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QIK++ IP++ ++A ++ G +AYI KP +L+ + + I Sbjct: 1143 TRQIKQNKHTMHIPLVILSAKNTNEEKIEGLDSGADAYIGKPFNLNYLKAIVSRLI 1198 >gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED L ++ +G+ +N A ++ R PD++++D L + G+ Sbjct: 4 ARILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDCDGV 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ + +P+I +TA + D+E G + Y++KP S + I + Sbjct: 64 SWIAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRR 123 Query: 123 A 123 A Sbjct: 124 A 124 >gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] Length = 248 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 21 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 80 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 81 FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 138 Query: 122 E 122 Sbjct: 139 R 139 >gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +L + +G+ + G +AL R+ P +I++D+ L + G E Sbjct: 6 RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDGFE 65 Query: 64 ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ PV+ +TA D + G + Y++KP +L + I+ + Sbjct: 66 VVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 248 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 84 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 >gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus LMG 18311] gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED + ++ GY + NG E LE+A + D+I++D+ L E+ Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++++ ++ ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I++D+ L + G+ A +G E LE + P ++++D+ + + Sbjct: 1 MKNRIIIIDDDPKLCALLEKCVTCDGFEAACASDGREGLEKLEEGSPVLVVLDVMMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E +PV+ +TA D+ + G + Y++KP ++ F + + Sbjct: 61 GFEVLRKIRE---TSAVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVHSLV 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|255532713|ref|YP_003093085.1| ATPase [Pedobacter heparinus DSM 2366] gi|255345697|gb|ACU05023.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1374 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN + ++ Y +G EAL L + + D+II D+ + E+ G+ Sbjct: 1122 KLLVVDDNPEIVDYLKNYFSNI-YQVSVAYDGKEALGLLDEEQVDLIICDVMMPELDGIH 1180 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+IK++ IPV+ +TA + + + G + Y++KP S+++ ++ I + Sbjct: 1181 FCKKIKQNIRTCHIPVVLLTAKNETNHQIKGLEVGADDYVTKPFSIALLEAKLQN-ISRS 1239 >gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|209524850|ref|ZP_03273396.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|284050500|ref|ZP_06380710.1| response regulator receiver, CheY [Arthrospira platensis str. Paraca] gi|209494729|gb|EDZ95038.1| response regulator receiver protein [Arthrospira maxima CS-328] gi|291568065|dbj|BAI90337.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 121 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +M+VED+ ++ +L+ SG +G+EALE +Q PD++++DI + ++G Sbjct: 1 MNTIMVVEDSVTQREMISNLLRESGLKVAVASDGVEALEQVQQISPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + Q+I ++ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 YELCRRLKSDPKTQKIAIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 120 >gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ Q K D++I+DI + + G ++ Sbjct: 8 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 68 CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122 >gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 238 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M ++ +++VED+ L D + GY L +G L +PD++++D+ L Sbjct: 1 MAQRTLLLVEDDREIRSLLADFLGREGYGVLAAEDGAAMDRLLATTRPDLVVLDLMLPGE 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL I ++++ S L P++ +TA A D + G + Y+ KP + + I+ Sbjct: 61 DGLSICRRLRARSGL---PILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAV 117 Query: 120 IGEA 123 + A Sbjct: 118 LRRA 121 >gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 223 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + ++ GY +G + +LA Q+ D++I+D L GL Sbjct: 2 KILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLPGKPGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + PV+ +TA D G + Y+ KP L M ++ + + Sbjct: 62 ICRELRSRGKT--TPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRS 119 >gi|23012559|ref|ZP_00052614.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 511 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN N K+ L+ G+ NG+EALE + + D+I+MD+Q+ E+ G E Sbjct: 276 ILLAEDNVFNQKVAAGLLNREGHRVTLANNGLEALEKLQDGRFDLILMDMQMPEMDGPEA 335 Query: 65 TKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+ L IP+IA+TA AM D R R G + +++KPI + I + + Sbjct: 336 TRRIRGLPGALAAIPIIALTANAMADDVARCRAAGMDGHVAKPIDPLLLRAAIAEVLPR 394 >gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED E ++ + +E Y +G + LE+A+ + D++++D+ L ++ Sbjct: 1 MNERILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ +PVI +TA D+ + G Y++KP ++ + ++ + Sbjct: 61 GIEVLRRLRQGGNT--VPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNIL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1400 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 +++++V+D+ N+ ++ G NG E LE+ ++ PD +++MD+ + E+ Sbjct: 1254 RRILVVDDDIRNVFALTHVLGRVGMTVKYAENGREGLEVLSRN-PDVSLVLMDVMMPEMD 1312 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E + I+ L ++P+IA+TA AM GD E+ G Y+ KP+ + + + + Sbjct: 1313 GYETIRAIRGTPRLADLPIIALTAKAMPGDREKAIDSGANDYVPKPVDVDRLLSAVCDLL 1372 >gi|281411689|ref|YP_003345768.1| response regulator receiver protein [Thermotoga naphthophila RKU-10] gi|281372792|gb|ADA66354.1| response regulator receiver protein [Thermotoga naphthophila RKU-10] Length = 122 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D+ + K+ ++ GY ++ NG ALE + PD+I++DI + + Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLLEFAPDLIVLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E E + IPVI +TA + DE G + + KP S S F+E +K + Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGAKKVMRKPFSPSQFIEEVKHLL 120 Query: 121 GE 122 E Sbjct: 121 NE 122 >gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ ++ L+E GY L+ +GM+ALEL + K ++IMD+ + ++ GL Sbjct: 5 ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKVHLVIMDVMMPKLDGLSA 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E + IP+I ++A + D+ G + Y++KP + +K ++ Sbjct: 65 VLKIRER---KNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRR 119 >gi|224540196|ref|ZP_03680735.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] gi|224518186|gb|EEF87291.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM 14838] Length = 1316 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + + + + + +NG EALE+ + +++ D+ + E+ G+E Sbjct: 1066 TILLVDDNVEILTYLQKKLSRN-FKVITAQNGREALEVLGKENMSLVVSDVMMPEMDGME 1124 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IKE+ +PVI +TA +M E + G + Y+ KP +S + I + Sbjct: 1125 LCTYIKENPSFCHLPVILLTAKSMTMYVEEGFQAGADDYLVKPFKVSTLIVRINNIL 1181 >gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 250 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 66/126 (52%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 ++++VED ++ + +E GY + +G AL L + + D++++D+ L Sbjct: 20 RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++GL+I + ++ ++ + +P++ ++A A + D + G + Y++KP S+ + Sbjct: 80 PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + I Sbjct: 138 RALIRR 143 >gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ + + G+ L+ +G EA++L Q + D++I+D+ + + G++ Sbjct: 4 ILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVMMPRMDGIKA 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E +P+I ++A D+ G + Y++KP + + +K + Sbjct: 64 CMHIREQ---YSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRR 118 >gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 235 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D + + L + G+I + +G AL LAR KPD++I+DI L + G+ Sbjct: 4 ATILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIMLPGLDGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +Q+ ++ + V+ +TA A + D+ G + Y++KP S + +K + Sbjct: 64 EVCRQLHRET---TVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120 >gi|145221593|ref|YP_001132271.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] gi|145214079|gb|ABP43483.1| multi-sensor hybrid histidine kinase [Mycobacterium gilvum PYR-GCK] Length = 1161 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D+ N+ ++ G L RNG L+ +H +++MDI + + G Sbjct: 1031 TVLLVDDDVRNVFSLGSALKRYGITVLPARNGQAGLDALGEHPEVGLVLMDIMMPVMDGY 1090 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+ + + +P++A+TA AMKGD ++ + G Y++KP+ + ++ ++ Sbjct: 1091 EAMRRIRAEPRWRHLPIVALTAKAMKGDRQKCLEAGASDYVTKPVDMDQLTSVLRVWLAG 1150 Query: 123 A 123 A Sbjct: 1151 A 1151 Score = 83.6 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ L +G+ ++ T +G AL LA+QH+P I +DI L +++G + Sbjct: 764 LIVEDDPTFARMLSGLAAEAGFDSVITASGRMALALAKQHQPAAITLDIGLPDMAGWVVL 823 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 +K D + IPV V+ D+ R + G ++KP +S Sbjct: 824 DVLKHDLATRHIPVNVVSG---TEDDGRGMRMGAIRTVNKPAEISDLRS 869 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 + V++ ED+ ++ + +IE+ G + L+ D +++D+ L +I G Sbjct: 883 RHVLVAEDDANQRQVVKHMIESDDIAITCVGTGAQVLDELSGGTSYDCLVLDLGLPDIDG 942 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 +++ ++IK+ + + +PVI T + E + A + K Sbjct: 943 IDLIERIKDQLKEKRLPVIVHTGRELTAVETERLENLAAAIVLK 986 >gi|114565936|ref|YP_753090.1| sensory box histidine kinase/response regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336871|gb|ABI67719.1| Hpt sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 497 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 75/117 (64%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN LN K+ ++ G+ + NG+EAL + + ++++MD+Q+ + G E Sbjct: 280 RVLLVEDNPLNQKIVGQMLYNYGFEVIMASNGLEALRILQDKPVNIVLMDMQMPVMDGYE 339 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ S+ ++IP+IA+TA ++ GD E+ GC +YI+KP ++ +K+YI Sbjct: 340 ATQFIRQHSKWRDIPIIAITAHSLPGDREKCLACGCTSYIAKPFKAHELVQLMKEYI 396 >gi|325914828|ref|ZP_08177163.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325538919|gb|EGD10580.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 1056 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE + + D+++MDI + E+ G+ Sbjct: 936 ATVLLAEDDVRNIFALSSVLEPLGVTLEIARNGREALERLAEREVDLVLMDIMMPEMDGI 995 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 996 TAMREIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1055 Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + DL + + N EAL+LA + +P I++DI L + SGL + Sbjct: 670 ILAVEDDTRFSQALVDLAHEMDFDCVVAPNAEEALQLAAELRPSGILLDIGLPDASGLSV 729 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + IPV V+A + + G Y+ KP + + I++ Sbjct: 730 LERLKRDPATRHIPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 781 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + + L+ + + EA+ D ++ D+ L + SG Sbjct: 790 RRLLIVEDDSALRENLQLLLARDQLDIVAVGSIAEAMAQLASSTFDCMVTDLALPDGSGY 849 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 850 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 909 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 910 SVEASLPSDQQRLLREA 926 >gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 224 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 61/109 (55%), Gaps = 2/109 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ L + + G+ +G EAL++AR+ PD++I+DI + + G Sbjct: 1 MDRILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110 +E+ ++++ E+PV+ +TA D+ R + G + Y+ KP + Sbjct: 61 MEVLRRLRAAD--PELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFE 107 >gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++ A G E L+ R+ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169837234|ref|ZP_02870422.1| two component transcriptional regulator, winged helix family protein [candidate division TM7 single-cell isolate TM7a] Length = 129 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++++ED+ +L ++ G+ +G E L +A+ D+I++D+ L ++S Sbjct: 13 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 72 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ K+I+E ++P+I +TA D+ G + Y++KP S + IK + Sbjct: 73 GMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 129 >gi|39936632|ref|NP_948908.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192292455|ref|YP_001993060.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39650488|emb|CAE29011.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] gi|192286204|gb|ACF02585.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ L + + +G E H+ D++++D+ L GL + Sbjct: 8 ILVVEDDRETRALIAKYLRANNCNVATAADGREMERWIADHRVDLVVLDVMLPGEDGLSL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +S L P+I +TA D + G + Y+ KP + + I+ + Sbjct: 68 CRKIRANSAL---PIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122 >gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein [Cytophaga hutchinsonii ATCC 33406] Length = 1158 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 KKV++V+D+ N+ + +E NG AL++ ++ ++++MDI + E+ Sbjct: 1037 SKKVLVVDDDIRNVYSLTNALEEEEMTCFIAENGKIALQVLTENPSIEIVLMDIMMPEMD 1096 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E TK I+ + +IP+IA+TA AMKGD E+ G YISKPI++ + ++ ++ Sbjct: 1097 GYEATKAIRNMPQFDKIPIIAITAKAMKGDREKCLAAGMSDYISKPINMEQLLSLLRVWL 1156 Score = 105 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED+ + KL D + Y + G L ARQ+KPD I++D++L + G E+ Sbjct: 772 VLLMEDDIVFAKLMLDFLHERKYKGIIATRGNTGLSYARQYKPDAIMLDMKLPVMDGAEV 831 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 KQ+K D L+ IPV ++ + + + G YI KP++ + ++ Sbjct: 832 LKQLKNDPALRHIPVQIISGYDR---KREGLELGAFDYIRKPVTKEVLLKA 879 Score = 91.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 56/103 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDNE R+L+ + G EA E+ + + D II+D+ L ++SG Sbjct: 892 KKLLVVEDNETQNTAIRELVGNGDVKSYSAYTGKEAYEMLLKDEYDCIIVDLGLPDMSGF 951 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ +QIKE E++ IP+I T + DE+ + A + K Sbjct: 952 DLIEQIKEKPEIKGIPIIVYTGRDLTADEKNLLNKLASAVVLK 994 >gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 971 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED ++ TS Y ++ NG E + A Q PD+I+ D+ + +SGL+ Sbjct: 594 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 652 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++E E +IPVI +TA ++ G Y+ KP S + I+ + Sbjct: 653 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLR 710 >gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 238 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++++D +KL +++ G+ + +NG E ++L + KPD++++DI + ++ G Sbjct: 8 RKILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIMMPDMDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I+ +PVI ++A + D+ G + Y++KP S IK ++ Sbjct: 68 FEVCKNIR---NFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|289662757|ref|ZP_06484338.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1057 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 937 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 996 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 997 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1056 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + DL + + N EAL LA + +P I++DI L + SGL + Sbjct: 671 ILAVEDDTRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 730 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A + + G Y+ KP + + I++ Sbjct: 731 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRDLLAGAIRQL 782 Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + L+ + + EA+E D ++ D+ L + SG Sbjct: 791 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMEQLAGSTFDCMVTDLALPDGSGY 850 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 851 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 910 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 911 SVEASLPSDQQRLLREA 927 >gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 243 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ ++ G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 77 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131 >gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 243 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGITA--PVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family protein [Streptomyces clavuligerus ATCC 27064] gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ M+L + G+ T +G ALELA++++ D I++D+ L ++GL Sbjct: 2 RILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGLR 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ PV+ +TA + DE G + Y++KP S + ++ + Sbjct: 62 VCARLRENRIW--TPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRR 118 >gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 223 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 ED+ D + GY R+G +AL + RQ +PD++++DI L SG ++ +++ Sbjct: 2 EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIMLPGKSGFDLCREL 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + P++ ++A + D+ + G + Y++KP SL + ++ + A Sbjct: 62 RAEKNC--TPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRRA 114 >gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1932 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++E + NG E + L DV++MD+ + E+ G Sbjct: 1812 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTSDIDVVLMDVMMPEMDG 1871 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I++ + + +P+IA+TA AM+GD ++ G YI+KP+ + ++ ++ Sbjct: 1872 YETMQLIRKKEQFKALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWL 1930 Score = 114 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ D+ G+ L ++G L+LA+ +P I++DI+L E+ G + Sbjct: 1547 LIIEDDVNFARILVDMARQHGFQVLTAQSGTAGLKLAKDFQPMAILLDIRLPEMDGWTVL 1606 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++K D + IPV +T ++ +R + G AY+ KP++ E + K Sbjct: 1607 DRLKHDPTTRHIPVHIMT---VEEGRQRGLQLGAIAYLQKPVTSEAISEALDKI 1657 Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED+EL + +LI S + G ALE R + D +++D+ L +++G Sbjct: 1666 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQQFDCLVLDLGLPDMTGF 1725 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +QIK ++ +P+I T + ++E + E I K + S ++ Sbjct: 1726 ELMEQIKREANGATLPIIVYTGREISKNQETELRRIAETIIVKDVRSPERLLD 1778 >gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590] Length = 219 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + + + Y +G L+ A D+II+DI L I+G Sbjct: 1 MANILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPHING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I++ P+I +TA + D+ G + YI KP + I+ + Sbjct: 61 LEICRRIRQQ---YTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 675 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 7/122 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 ++++ +D N +L R ++ +G NG+EA+ + +I+MD+Q+ E Sbjct: 535 RILVADDGIDNQRLLRQILTRAGADVTVAENGLEAVRAWQAANLAGCPFALILMDMQMPE 594 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + T++++E IP+IA+TA AM GD + + GC+ Y++KP +ET++K Sbjct: 595 LDGYQATRRLRELGAT--IPIIALTAHAMTGDRDLCLQAGCDDYLTKPFERKRLLETLRK 652 Query: 119 YI 120 + Sbjct: 653 RL 654 >gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1156 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 70/126 (55%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56 +++++VED+ N+ ++E G I RNG+EAL D+++MD+ + Sbjct: 1031 RRILVVEDDVRNVFALTSILEPRGAIVQIARNGLEALRALDGSAGHPDRSIDLVLMDVMM 1090 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ GL T+++++ +++PVI +TA AMK D+E+ G Y++KP+ + + + Sbjct: 1091 PEMDGLTATRELRKKPAWKKLPVIMLTAKAMKDDQEQCLAAGANDYMAKPLDVEKLLSLV 1150 Query: 117 KKYIGE 122 + ++ Sbjct: 1151 RVWMPR 1156 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED+ ++ DL G+ L E L +A Q++P +++D+ L + SGL + Sbjct: 765 ILIVEDDAPFARIVVDLAHELGFQCLVAATAEEGLAVAVQYRPSAVVLDVGLPDNSGLSV 824 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++K D+ + +PV V+A + G Y+ KP+ +++ Sbjct: 825 LDRLKRDARTRHVPVHVVSAGD---YAQTALALGAVGYMLKPVQREQLAGALQQ 875 Score = 72.1 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 IVED+ + L+ T+ + E LE + D +++D+ L + SG + + Sbjct: 889 IVEDDPVQRDSLCRLLGTADVETVAVGTAAECLERLKTATFDCMVLDLSLPDASGYALLE 948 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 + + PVI T ++ DEE+ + Sbjct: 949 TLSAEDAYSFPPVIVYTGRSLSADEEQKLR 978 >gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1967 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +KV++V+D+ N+ ++E G + E L+ + ++++MD+ + E+ G Sbjct: 1832 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLDQLEKDADIELVLMDVMMPEMDG 1891 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + I+ +P++A+TA AMKGD E+ + G YI+KP+ + + ++ ++ Sbjct: 1892 YQAMRAIRRMERFVHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 1950 Score = 57.4 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ ++ + +L+ + + EAL + + D +++D+ L ++ G E+ Sbjct: 1689 LVVEDDPVHRQTLTELLGSDDVQTVAVGTAAEALAALAERRFDCMVLDLGLPDMPGTELI 1748 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 +++ E P+I T + +E + EA + K S +E Sbjct: 1749 RRVHEAHGAGGPPLIVYTGRELTRAQETELRRVAEAIVVKDAQSPERLLE 1798 Score = 51.3 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 18 FRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEI 77 R + +G+ L + +AL+ R +P + +D+ L E++G + ++K D+ + + Sbjct: 1579 LRAAAQGTGFKLLVSTEVEDALDAVRNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRAL 1638 Query: 78 PVIAVTAFAMKGDEERIRKGGCEAYI 103 PV V+ ++ ER G ++ Sbjct: 1639 PVYTVS---VEDHRERSLNLGAIGHL 1661 >gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis] Length = 369 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + + + + ++E GY L + EA+ + + +K D+I++D+ + +SG E Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 197 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E + P+ +TA + D+ G + YI+KP + I+ ++ Sbjct: 198 ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 253 >gi|330996468|ref|ZP_08320350.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573024|gb|EGG54643.1| response regulator receiver domain protein [Paraprevotella xylaniphila YIT 11841] Length = 1328 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + ++ + +I NG +AL+ R+ D++I D+ + E++G E+ Sbjct: 1056 ILIVEDEDSIRNFMKERLSPL-FIVETASNGKDALDTIRKEHIDLVISDVMMPEMNGYEL 1114 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 IK D L IP+I +TA + + K G EAYI KP S I + Sbjct: 1115 CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLL 1170 >gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 1136 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D +N+++ +++++ GY RNG EAL Q +PD+I++D+ + +SGL++ Sbjct: 699 ILAVDDEPINLQVLQNVLQPQGYRVTTARNGTEALRNVAQDRPDLIVLDVMMAGLSGLDV 758 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ L E+P+I +TA D + G Y+ KP + I+ + Sbjct: 759 ARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLL 814 >gi|197104775|ref|YP_002130152.1| polar differentiation response regulator [Phenylobacterium zucineum HLK1] gi|196478195|gb|ACG77723.1| polar differentiation response regulator [Phenylobacterium zucineum HLK1] Length = 121 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 86/120 (71%), Positives = 105/120 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+E GY ++TR G+ AL LAR+H+PD+I+MDIQL EIS Sbjct: 1 MAKKVLIVEDNELNMKLFHDLLEAQGYEIIETREGLAALSLAREHRPDLILMDIQLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL +IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+S F+ETI++ + Sbjct: 61 GLEVTKWLKEDDELAKIPVVAVTAFAMKGDEERIREGGCEAYISKPISVSHFLETIRRLL 120 >gi|166366087|ref|YP_001658360.1| CheY family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166088460|dbj|BAG03168.1| two-component response regulator CheY subfamily [Microcystis aeruginosa NIES-843] Length = 121 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 68/121 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED++ +L DL+ SG +G+EALE ++ PD++++DI + ++G Sbjct: 1 MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRANPDLVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + + +PV+ + D K G +AYI KP F+ TIK+ + Sbjct: 61 YEVCRRLKSDPKTKNVPVVICSLKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 237 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+ +V+D ++ + +E SGY NG++A+ L + PD+II+D+ L +I G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I + +++ S+ +P+I +T + D G + Y++KP S + +K + Sbjct: 70 DICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 126 >gi|119899743|ref|YP_934956.1| pilus protein [Azoarcus sp. BH72] gi|119672156|emb|CAL96070.1| pilus protein [Azoarcus sp. BH72] Length = 121 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 60/116 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ +L+ GY +G EA+ ++ KPD+I+MD+ + ++G + Sbjct: 5 KILVVDDSPTERLALTELLTRHGYQVATAESGEEAITKSKSEKPDLILMDVVMPGMNGYQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I D + IP+I T+ ++ D+ + G Y+ KP+ + + IK Sbjct: 65 ATRTISRDDATRNIPIIMCTSKGLETDKIWGMRQGAYDYLVKPVEHNELLARIKSI 120 >gi|119486065|ref|ZP_01620127.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119456840|gb|EAW37968.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 479 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L +++ GY NG AL +PD+I++DI + E++G E+ Sbjct: 16 IVVVDDTPDNLRLLGNILRKEGYKVRLIPNGELALSGIELLRPDLILLDIMMPEMNGYEV 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K +++PVI ++A D+ + + G YI+KP + + ++ ++ Sbjct: 76 CQHLKAREHSRDVPVIFISAIDEVSDKVKAFEAGGVDYITKPFQVQEVLVRVETHL 131 >gi|94264449|ref|ZP_01288238.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455139|gb|EAT05361.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 391 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 +V++V+D N++L +++ G+ G EAL + R PD++++D+ + E+ G Sbjct: 11 RVLVVDDQPPNIQLLAEVL-ADGHQVFIATGGAEALAICRAPKPPDLVLLDVVMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D IPVI VTA +E G YISKP S +I ++ + Sbjct: 70 EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQL 127 >gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 254 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ Q K D++I+DI + + G ++ Sbjct: 34 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 94 CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 >gi|118577295|ref|YP_899535.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504800|gb|ABL01282.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ +E +G+ L T G EA+ L +P ++++D+ L ++S Sbjct: 1 MTSTILLVEDDARIAEVVIAYLERAGFKVLHTLTGREAMTLISTEQPALVVLDLMLPDLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I +++KE +IPVI +TA + + + G + YI KP S + ++ + Sbjct: 61 GESICRELKE----CDIPVIILTAKSSEEERLAGFALGADDYIVKPFSPRELVARVQAVL 116 Query: 121 GE 122 Sbjct: 117 KR 118 >gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7] gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050 [Bacillus amyloliquefaciens DSM 7] gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens TA208] Length = 225 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ +L R ++E SG+ + +G A++L D+II+D+ + ++ G E+ Sbjct: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++ +IP++ +TA D+ + G + Y+ KP +K + Sbjct: 64 SEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 118 >gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++IV+D + L ++ GY N +A E + ++ D++++DI ++ ++G Sbjct: 1 MKHILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMMRGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K+++ E+P+I V+A + + D + G + Y++KP S+ + IK + Sbjct: 61 LDLCKKVR---MTSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ +++ G+ A +G AL+ +PD++++D+ L Sbjct: 1 MTHRVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ +S +P+I +TA + D + G + Y+SKP + I+ + Sbjct: 61 GTVVCREIRRESG---VPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces ghanaensis ATCC 14672] Length = 1332 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 + +++V+D+ N+ ++E G+ L NG + ++ + PD +++MD+ + E+ Sbjct: 1212 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNN-PDVALVLMDVMMPELD 1270 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G T +I+ E+P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1271 GYAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1330 Score = 39.3 bits (92), Expect = 0.19, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 13/82 (15%) Query: 46 KPDVIIMDIQLQEISGLEITK---QIKEDSELQEIPVIAVTAFAMKGDEERIRKG---G- 98 +++++ + E E+T+ ++ DS L +PV+ + E + G Sbjct: 1104 PCHCVVLELGMAEE---EVTRFLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGT 1160 Query: 99 CEAYISKPISLSIFMETIKKYI 120 ++S SL E I ++ Sbjct: 1161 ALEFLS---SLDELRERIALHL 1179 >gi|237717798|ref|ZP_04548279.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452897|gb|EEO58688.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1321 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ L++ Y+ NG +AL +AR++ PD+I+ D+ + E+ G Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ +K D E IPV+ +TA + D + G +AYI+KP S+++ I+ + Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I+ED L +D +E SG+ +G+ L+ A D+ I+D+ L I G Sbjct: 1 MSKVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQI+E+ + P++ V+A D+ R G + YI+KP S S + +K ++ Sbjct: 61 FEICKQIREE---KNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 1514 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN + L++ Y+ +G+ ALE +Q +PD+++ DI + ++GL Sbjct: 648 ARILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGL 706 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q++ Q++P+I ++A A + + + Y+ KP S + ++ + Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACL 764 >gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 248 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 84 VLRALR---TAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 >gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED +L + +G+ +G A PD++++D L SGL + Sbjct: 2 LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDAMLPDLVLLDWMLPGASGLTLA 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + D + +P+I +TA + D G + Y++KP S + I+ + Sbjct: 62 RRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRR 118 >gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVED + +K+ D + ++ + +G ALE+ +H PD+I++DI L +++ Sbjct: 1 MTKKILIVEDEKNLIKVIEDTLLEESFLTYKALDGETALEMFYEHNPDLILLDINLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+++S IP+I +TA + DE + G + YI+KP SL + IKK + Sbjct: 61 GWEVCQNIRKES---NIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKML 117 >gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + +E Y +G E L+LA + D++++D L + GL Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKKDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++E + P++ +TA D G + Y++KP + + + ++ + + Sbjct: 62 VLKELRERKNV--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRS 119 >gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++ A G E L+ R+ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKEYSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 254 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ +G++AL+ + K D++I+DI + + G ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 94 CFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148 >gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1035 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN L+ + + NG ALE+ Q PD+++ D+ + E+ G Sbjct: 666 RILLVDDNADMRHYVSRLL-SERWQVETAANGAIALEMIAQQLPDLVLTDVMMPELDGFG 724 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ D + IP+I ++A A K + G + Y+ KP S + ++ + Sbjct: 725 LLNTLRADPITKSIPIILLSARAGKEATIEGLEAGADDYLIKPFSTYELIARVQTQL 781 >gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ +G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317052668|ref|YP_004113784.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316947752|gb|ADU67228.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 366 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++++ED+ + +L+ Y ++G E + A + D+++ DI + ++ G Sbjct: 1 MRRILLIEDDPVLRHNMVELLTLENYDVDDAQDGEEGVRKALESHHDLVLCDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + +K IP + +TA K D R G + YI KP + ++ I+ + Sbjct: 61 YQVFEALKSHPRTASIPFLFLTAKVDKEDVRRGMVMGADDYIQKPAPIEELLQAIEVRLR 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|281425218|ref|ZP_06256131.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella oris F0302] gi|281400684|gb|EFB31515.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella oris F0302] Length = 1295 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + ++T + R+G EAL L RQ +PD+++ D+ + + G ++ Sbjct: 1033 VLVVDDNTDFLGFLHTSLQTYFRRVFRARDGKEALCLLRQQQPDLVVSDVMMPVMDGYQL 1092 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + IKED E+ IPV+ +TA + + K G +AYI+KP + + + I+ + Sbjct: 1093 CQTIKEDIEISHIPVVLLTAKSDAESQTIGYKLGADAYIAKPFDIELLLSVIEMQLRR 1150 >gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1209 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDNE+N L ++ G+ +G EA++ + D+++MD+Q+ + GLE Sbjct: 955 KILLAEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALARENFDLVLMDVQMPVMDGLE 1014 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ + L PVIA+TA A+KGD E+ + G ++Y+ KPI + + IK + Sbjct: 1015 ATRLIRAREQEEGLLRTPVIAITAHALKGDREKCLEAGMDSYVQKPIRKADLFKEIKAVL 1074 Query: 121 GE 122 GE Sbjct: 1075 GE 1076 Score = 88.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 KV+IV+DN N + + + ++G + L++ V+++D+ + E Sbjct: 808 KVLIVDDNANNAGILEESLRYWWMQPAIAQSGGQGLKMLEHAASANDPFQVMLLDMHMPE 867 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++GL++ + +++ + ++ +T+ A GD ++R G +AY+ KP+ S + I Sbjct: 868 MNGLDVLEAMQDMDPSVKPVILVLTSGAQLGDSRKLRTYGVKAYLFKPVKQSKLLGAI 925 >gi|254411882|ref|ZP_05025658.1| Adenylate and Guanylate cyclase catalytic domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181604|gb|EDX76592.1| Adenylate and Guanylate cyclase catalytic domain protein [Microcoleus chthonoplastes PCC 7420] Length = 368 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D E L R +IE GY L+ +G++ L L ++ PD+I++D + + G Sbjct: 16 VLIVDDEETQRLLMRRVIEKEGYQILEASDGLDCLRLCKKTSPDIILLDAMMPVMDGFTC 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K++ ++ ++PV+ +TA K + + G Y++KPI + ++ +++ I Sbjct: 76 CQQLKKNPKMSQVPVLMITALEDKKSVNQAFEAGATDYVTKPIHWPVLLQRVRRLI 131 >gi|189466029|ref|ZP_03014814.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM 17393] gi|189434293|gb|EDV03278.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM 17393] Length = 375 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 61/113 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + PD++++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKENPDLVLLDVMMPDMSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + +K + + +IP+I +TA D + + G +ISKP + + + Sbjct: 71 VAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 123 >gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 250 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ + + +E GY +G++ LE R D++I+D+ L E+ G+ + Sbjct: 21 VLVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAHDLLILDVMLPELDGIGL 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E+S +PV+ ++A D + G + Y+ KP+ + + I+ + A Sbjct: 81 CRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRA 136 >gi|88861388|ref|ZP_01136018.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Pseudoalteromonas tunicata D2] gi|88816654|gb|EAR26479.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Pseudoalteromonas tunicata D2] Length = 331 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 75/118 (63%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D +N+++ + L+ Y + ++G EAL+LA Q +PD+I++DI + +++G Sbjct: 9 QTLLLVDDEPVNLRILKQLLHPD-YQLIFAKHGEEALKLALQERPDLILLDIMMPDMTGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K+ E Q IPVI VTA + + DE G YI+KPIS ++ IK ++ Sbjct: 68 EVCQQLKQRPETQAIPVIFVTALSEEHDEAAGFAVGAVDYITKPISTAVVKARIKTHL 125 >gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] Length = 1763 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 73/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N ++ + +E G + NG ALE Q D+++MD Q+ + G Sbjct: 1420 KRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGY 1479 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+++++ L E+PV+A+TA AM GD+E G +I+KPI + I +T+ +Y+ Sbjct: 1480 QATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYL 1537 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + R +++ G+ R+GMEALE + + ++D ++ E+ G E Sbjct: 1281 VLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTET 1340 Query: 65 TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++E L++ P ++ V+A A +++ + G YI+KPIS S ++ I +G Sbjct: 1341 AARMRE---LKQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRLLDGIMSALGR 1396 >gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E ++E G+ +G AL +H D+I++D+ L +SG E Sbjct: 5 RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLMLPGLSGTE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ S +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 65 VCRTLRARS---TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRR 120 >gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1334 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE L L Y + ++G E E ++ +PD+++ DI + ++SG+E Sbjct: 1085 KILIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK + E IPVI +TA + + K G + Y++KP ++ + Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200 >gi|327312954|ref|YP_004328391.1| response regulator receiver domain-containing protein [Prevotella denticola F0289] gi|326945707|gb|AEA21592.1| response regulator receiver domain protein [Prevotella denticola F0289] Length = 716 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN+ + ++ + Y L +G + L+LA+++ PD+I+ D+ + + GLE Sbjct: 467 TVLVVDDNKDIRVYLQLTLQDT-YQVLLASDGRQGLQLAKENIPDLIVSDVMMPVMDGLE 525 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+++ IPV+ +TA + + G +AYI+KP S + I + Sbjct: 526 LCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKARIGNLL 582 >gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED +L +D +E SG+ + G L+ A ++II+D+ L + G Sbjct: 1 MSKILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+++E + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICKKVREK---KNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 225 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ +G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676] gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676] Length = 243 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ ++ G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 77 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131 >gi|218886198|ref|YP_002435519.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757152|gb|ACL08051.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 391 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 + V++V+D N+ L DL++ + Y +G +AL + PD++++DI + + G Sbjct: 13 RTVLVVDDTVDNLTLLSDLLKDT-YRVKVANSGEKALRILSSGSPPDLVLLDIMMPGMDG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++KE ++PVI +TA + + DE + G YI+KPIS SI + ++ ++ Sbjct: 72 YTVLRRLKELPGTADVPVIFLTALSEEDDERIGLELGAVDYITKPISPSIMLARVRTHL 130 >gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 250 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 66/126 (52%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 ++++VED ++ + +E GY + +G AL L + + D++++D+ L Sbjct: 20 RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++GL+I + ++ ++ + +P++ ++A A + D + G + Y++KP S+ + Sbjct: 80 PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + I Sbjct: 138 RALIRR 143 >gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 229 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60 + +++IV+D+ + L+E +GY Q + +A + + P ++I+D+ L + Sbjct: 1 MSRILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDGD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI++ + +P++ ++A D G + Y++KP + + + ++ + Sbjct: 61 GFELCRQIRQGGQY--LPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAIL 118 Query: 121 GEA 123 A Sbjct: 119 RLA 121 >gi|114319518|ref|YP_741201.1| response regulator receiver protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225912|gb|ABI55711.1| response regulator receiver protein [Alkalilimnicola ehrlichii MLHE-1] Length = 121 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ ++ R ++E G+ ++ +G + LE AR PD+I+MDI + ++G Sbjct: 1 MARILVIDDSPTDLHAIRSILEGEGHQLIEAGDGEQGLEQARSAHPDLILMDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+++ D+E IPVI V++ D ++ G YI+KP+ ++ ++ +G Sbjct: 61 FQATRRLNRDAETASIPVIMVSSKDQATDRIWAKRQGAVDYIAKPVERDELLQKVRAVLG 120 >gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] Length = 224 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED ++ + ++ Y +G EAL+ D +I+DI + ++ GL Sbjct: 2 RILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +E PV+ +TA D + G Y+ KP + + ++ + + Sbjct: 62 VLRKMRNKNE--NTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRK 118 >gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 239 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED + G+ A +G A++ A + PD+IIMD+ L + G+ Sbjct: 12 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I IPV+ +TA + D G + Y+SKP S+ + ++ + Sbjct: 72 EATKRI---EAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 128 >gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217] gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217] Length = 241 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M+ ++IV+D+ +E +G A N + ++ + D+I++D+ + Sbjct: 1 MMTQPPHILIVDDHREIRDALVKYLEKNGIRATSAANAVAMDVAMKEGQFDLIVLDVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GL + ++++ IP++ +TA + D + G + Y+ KP + + IK Sbjct: 61 GEDGLSVCRRLRAQGG---IPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIK 117 Query: 118 KYIGEA 123 + + Sbjct: 118 AILRRS 123 >gi|329955055|ref|ZP_08296036.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328526345|gb|EGF53360.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 390 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + PD++++D+ + ++SG E Sbjct: 26 KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVEKEHPDLVLLDVMMPDLSGFE 85 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K + + +IP+I +TA D + + G +ISKP + + + Sbjct: 86 VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 138 >gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564] gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G EALE+ ++ D+II DI + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + + P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 226 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D + R E GY + +GM+A+E R+ + D+IIMDI + + G Sbjct: 1 MSKLLVVDDEAQIRNIIRKYGEFEGYEIAEAVDGMDAIEKCRKDQFDLIIMDIMMPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I+E+ PVI ++A + D + G + Y+ KP S M + + Sbjct: 61 FSAVKKIREE---ASTPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] Length = 236 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ GYI T NG ELA+ D++I+D L E +GLE Sbjct: 2 KILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + IPV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 62 ICQELRRQG--KNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRS 119 >gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1095 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N + ++ G+ NG EAL+ D + MDIQ+ ++G++ Sbjct: 972 RLLVVEDNRVNRLMVARMLTMMGHAVETANNGEEALKTLETQPFDAVFMDIQMPGMNGVQ 1031 Query: 64 ITKQIKEDSELQ----EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+E + IPVIA+TA AM GD E +GG + YI+KP+ L+ + + Sbjct: 1032 ATRRIREADQGSGIDPAIPVIAITAHAMAGDREIFLEGGMDDYIAKPVELTELEAVLARL 1091 Score = 96.4 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 4/106 (3%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++I+ED+ +L +E SG+ NG L+ + +++D+QL ++ Sbjct: 1 MKPDHILIIEDSPEFARLVAHHLEASGFSVHLAENGRAGLDAFGGRRFSAVLLDLQLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 GL + + IP+I V+ D + + G ++ K Sbjct: 61 DGLAVLADM--ADRSDSIPLIVVSGSNGIEDAVQAVRRGAWDFVVK 104 >gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 223 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED KL +D + G+ + +G++ LE+ + + D++I+DI + + G ++ Sbjct: 3 ILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMIPYLDGWKV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K I+ +L ++P+I +TA + D+ + G + Y++KP S + + +K + + Sbjct: 63 CKSIR---DLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRS 118 >gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] Length = 241 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G ++ + D++I+DI + ++ Sbjct: 12 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ + +K I Sbjct: 72 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGI 128 Query: 121 GEA 123 + Sbjct: 129 RRS 131 >gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273] gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273] Length = 233 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + +I G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 227 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+ + + G+ G + L L +P+++++D+ L I+G Sbjct: 1 MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLPGING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++I+E S+ +P+I +TA D + G + YI KP + +K + Sbjct: 61 VQVCRRIRESSQ---VPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] Length = 231 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D++ ++ + GY + +G+EAL++ + +I+MDI + ++ G Sbjct: 1 MYNILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEEIHLILMDIMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ T +I+++ + IP+I V+A D+ G + YI+KP +L + +K + Sbjct: 61 IKATIKIRQE---KNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|257095132|ref|YP_003168773.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047656|gb|ACV36844.1| response regulator receiver protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 120 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 61/117 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+ + + L+ ++GY + +G E + A+ PD+I+MD+ + ++G Sbjct: 4 KRILVVDDSPTERHVMKTLLSSNGYEVITAESGEEGIAKAKSELPDLILMDVVMPGLNGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T+ + D + IPVI T + D+ + G + Y+ KP++ + I Sbjct: 64 QATRTLTRDEATRNIPVIVCTTKGQETDKIWGLRQGAQDYLVKPVNGQELLAKIAAL 120 >gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides sp. 2_1_22] Length = 1353 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + L NG EALE ++++ D+I+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRHYLSSGLSEL-FNTLDAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A + D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 231 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED + L++ G+ +G EAL + +PD++++D+ L +SG Sbjct: 1 MTEVLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I+ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCKNIR---LKSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|189466459|ref|ZP_03015244.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] gi|189434723|gb|EDV03708.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM 17393] Length = 1316 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + + + + + +NG EALE+ + +++ D+ + E+ G+E Sbjct: 1066 TILLVDDNIEILTYLQKELSRN-FKVVTAQNGREALEVLGKKNVSLVVSDVMMPEMDGME 1124 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IKE+ L +PVI +TA +M E + G + Y+ KP +S + I + Sbjct: 1125 LCTYIKENPSLCHLPVILLTAKSMTIYVEEGFQAGADDYLVKPFKVSTLIVRINNIL 1181 >gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753] gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753] Length = 232 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+ L R +ET Y +NG AL + PDV+I+D+ L ++ G++ Sbjct: 5 KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVSYHPDVVILDLGLPDMDGVD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I K+I+ +P+I V+A D+ G + Y++KP S+ F+ ++ + + Sbjct: 65 IIKKIRS---FSTMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRS 121 >gi|149276155|ref|ZP_01882299.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232675|gb|EDM38050.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 633 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 75/114 (65%), Gaps = 1/114 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I EDN +N+KL ++ GY A +G EALE+ + D+++MD+ + E+ GLE Sbjct: 506 RILIAEDNPINIKLATTILLKLGYQADVAHDGHEALEMCIAKRYDLVLMDVMMPEMDGLE 565 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T+QI+ ++++ +IA+TA AMK D E+ G + Y+SKP+++++ M T++ Sbjct: 566 ATRQIR-LLDIKQPTIIAMTANAMKEDREKCLNAGMDEYLSKPLNMNLLMSTLE 618 >gi|170727318|ref|YP_001761344.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] gi|169812665|gb|ACA87249.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella woodyi ATCC 51908] Length = 369 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D N+ L +L++ + Y NG+ AL + + D+I++D+ + E+ G Sbjct: 13 KTVLIVDDTPDNLSLLHELLKDN-YHVKAAVNGVIALNIINKGGIDIILLDVMMPEMDGY 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D E+ +IP+I +TA DE G Y+SKPIS + + +K ++ Sbjct: 72 EVCRRVKADDEICDIPIIFLTAKTSIDDETMGFDLGAADYLSKPISPPLLLARVKTHL 129 >gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D E + + E T G+ A+ +G EAL A + + D++I+D+ + ++G E Sbjct: 7 ILIVDDEEDLRETLAEQFELTDGFTAMVAASGEEALRKAAEERVDLVILDVDMPGMNGRE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +Q++E +PVI +T + + D + G Y++KP S ++ + ++ + Sbjct: 67 VCRQLREKGI--RVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLR 122 >gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R] gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium glutamicum] gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 74 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRR 129 >gi|319901758|ref|YP_004161486.1| two component transcriptional regulator, AraC family [Bacteroides helcogenes P 36-108] gi|319416789|gb|ADV43900.1| two component transcriptional regulator, AraC family [Bacteroides helcogenes P 36-108] Length = 1361 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVED++ + + Y L NG E ++ A + +PD+++ D+ + G Sbjct: 1104 KTLLIVEDHKDIRLYLKVIFGKE-YNLLFATNGQEGIDTAVEGQPDLVLCDVMMPVKDGF 1162 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++KE IP+I +TA D + G + Y+ KP + I ++ I Sbjct: 1163 ECCRELKEGLSTCHIPIIMLTAKVEDDDILHGLELGADDYVLKPFTPGILQAKVRNLI 1220 >gi|319640287|ref|ZP_07995012.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388062|gb|EFV68916.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1346 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 >gi|313145398|ref|ZP_07807591.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313134165|gb|EFR51525.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 1361 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+EDN + R L Y L+ +G E +++A + PD+II D+ + G Sbjct: 1113 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKEIPDLIISDVMMPVKDGF 1171 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E E IP++ +TA A D + + G + Y+ KP + + ++ I Sbjct: 1172 ACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLI 1229 >gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 1052 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 20/139 (14%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQL 56 M + ++++ EDN +N KL + +++ +GY NG EA+E +A ++ +I MD+Q+ Sbjct: 907 MKRSVRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGREAIEILMASRNGFHLIFMDVQM 966 Query: 57 QEISGLEITKQIKEDSE----------------LQEIPVIAVTAFAMKGDEERIRKGGCE 100 E+ G T++I+ + IP+IA+TA AMKGD E G + Sbjct: 967 PEMDGFTATREIRRLESEHVLKPPQCTDFHASTIARIPIIAMTAHAMKGDREACIDAGMD 1026 Query: 101 AYISKPISLSIFMETIKKY 119 YI+KPI ++K+ Sbjct: 1027 DYITKPIKREGVFSIVEKW 1045 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 14/134 (10%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 KK ++V+DN+ N+K+ ++ G + G++ L L Q D+ I DIQ+ Sbjct: 751 KKALLVDDNDTNLKILAAYLKPVGIRLVLLNKGVDVLPLLESAIGEQDPFDICITDIQMP 810 Query: 58 EISGLEITKQIK--------EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109 +SG E+ +QI+ + ++ +P++A+++ D +R R+ G + ++ KPI Sbjct: 811 IMSGYEVARQIRLFESPVSGLQTSIRSLPLMALSS-VRGQDAKRCREVGFDGFLGKPIRR 869 Query: 110 SIFMETIKKYIGEA 123 +++ +G A Sbjct: 870 ERLYRMLERILGAA 883 >gi|294777704|ref|ZP_06743155.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448772|gb|EFG17321.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1346 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 >gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 1066 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 65/116 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN + +++ +G+ A+ +NG + A+ + PDVI+ D+ + ++SGLE Sbjct: 846 TVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLE 905 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + + I+ EL+ P+I +TA A + + G +AY+SKP + + ++ Sbjct: 906 LIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL 961 Score = 88.3 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 5/117 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 +++V+D N+ L + L+ +G AL++ + + VII D ++ +SG Sbjct: 11 TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118 E + I +I +T + D G Y++KP +++ Sbjct: 70 EFLS-LTATQYPDSIRII-LTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQ 124 >gi|265753055|ref|ZP_06088624.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263236241|gb|EEZ21736.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1351 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1095 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1153 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1154 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212 >gi|254881285|ref|ZP_05253995.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254834078|gb|EET14387.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1351 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1095 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1153 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1154 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212 >gi|251793482|ref|YP_003008211.1| CpxR [Aggregatibacter aphrophilus NJ8700] gi|247534878|gb|ACS98124.1| CpxR [Aggregatibacter aphrophilus NJ8700] Length = 231 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L L++ G+ NG EAL L H D+I++DI + ++G Sbjct: 1 MAKILLVDDDAELTELLAQLLDLEGFEINVANNGKEALALL-DHSYDLILLDIMMPILNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E KQI++D PV+ +TA D + G + Y+ KP + + IK + Sbjct: 60 IETLKQIRKDF---STPVMMLTARGDDIDRILGLELGADDYLQKPFNDRELVARIKAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|237711636|ref|ZP_04542117.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229454331|gb|EEO60052.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1356 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1100 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1158 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1159 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1217 >gi|237725922|ref|ZP_04556403.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435730|gb|EEO45807.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1344 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1088 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1146 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1147 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1205 >gi|212695343|ref|ZP_03303471.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855] gi|212662072|gb|EEB22646.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855] Length = 1346 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 >gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1313 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N K+ +E GY A NG EA+ +++MD+Q+ E+ GLE Sbjct: 1185 ILLAEDNTVNQKVALRFLERLGYRADAVSNGQEAVTTLAARHYHLVLMDLQMPEMDGLEA 1244 Query: 65 TKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++QI++ P ++A+TA AM+GD ER + G + YISKP+ L I++ Sbjct: 1245 SRQIRKKVPASRQPKIVALTANAMQGDRERCLEAGMDDYISKPVKLHEIEAAIRRL 1300 >gi|150003414|ref|YP_001298158.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931838|gb|ABR38536.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1346 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN + + NG + LE A PD+I+ DI + ++G Sbjct: 1090 KRILLIVEDNRDICDYIVESFSDD-FEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207 >gi|319954447|ref|YP_004165714.1| transcriptional regulator, crp/fnr family [Cellulophaga algicola DSM 14237] gi|319423107|gb|ADV50216.1| transcriptional regulator, Crp/Fnr family [Cellulophaga algicola DSM 14237] Length = 355 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++EDN ++ +++E Y G +E A+ PD+I+ DI + + G Sbjct: 1 MKKILLIEDNLDVREMTAEILELENYEVATAEKGKIGIEKAKSFAPDLILCDIMMPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E+ +Q+ +D P I +TA + + D + G + Y++KP +E I+ Sbjct: 61 YEVFEQLSKDHSTASTPFIFLTAKSERSDLRKGMTMGADDYLTKPFEAQDLIEAIEA 117 >gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8] gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8] gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 229 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++ +D++ ++L I GY ++ +G EAL D++I+DI + + G+ Sbjct: 2 KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+++++S+ IP+I +TA D+ + G + Y++KP + M +K + Sbjct: 62 EVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118 Query: 123 A 123 + Sbjct: 119 S 119 >gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator fusion [Pseudomonas fluorescens SBW25] Length = 1184 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + + RNG EA++ + D+++MD+ + E+ G Sbjct: 1060 RKILLVDDDVRNIFALTSALEHKGAVVVIGRNGREAIDKLNEVDDIDLVLMDVMMPEMDG 1119 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T I++D +++P+IAVTA AMK D+ER G Y++KPI L I+ ++ Sbjct: 1120 YEATALIRQDPRWKKLPIIAVTAKAMKDDQERCLAAGSNDYLAKPIDLDRLFSLIRVWLP 1179 Query: 122 E 122 + Sbjct: 1180 K 1180 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 794 ILVVEDEPNFARILFDLAHELGYHCLVAHGADEGYSLAEEYIPDAILLDMRLPDHSGLTV 853 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP + + + Sbjct: 854 LQRLKEHANTRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 905 Score = 75.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED++L LI EAL+L R + D +I+D++L ++ G Sbjct: 914 KRVLLVEDDDLQRDSIARLIGDDDIEITAVGFAQEALDLLRTNAYDCMIIDLKLPDMLGN 973 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T + DEE Sbjct: 974 ELLKRMATEDICSFPPVIVYTGRNLTRDEEA 1004 >gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 243 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D+ L KL L+E G+ + +AL Q PD+I++D+QL + G + Sbjct: 8 ILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALEQRTPDLILLDVQLPRMDGFTL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K IK+ + E+PVI +TA A D+ + G + Y+ KP + + +K + A Sbjct: 68 LKHIKK--QYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRRA 124 >gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 222 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++EDN ++ + +E +GY L +G+ L AR+H PD++++D+ L + Sbjct: 1 MDQRILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ +P+I +TA + + + G + Y++KP + +K + Sbjct: 61 GAEVARRLRK---TSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] Length = 260 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE Q D++++D+ L + G Sbjct: 36 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMDG 95 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 96 LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 153 Query: 122 E 122 Sbjct: 154 R 154 >gi|218130934|ref|ZP_03459738.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697] gi|217987278|gb|EEC53609.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697] Length = 390 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + PD++++D+ + ++SG E Sbjct: 26 KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEHPDLVLLDVMMPDLSGFE 85 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K + + +IP+I +TA D + + G +ISKP + + + Sbjct: 86 VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 138 >gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I+ED+E + + +E Y L+ NG EA + + PD++I+D+ L +I G Sbjct: 1 MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVKQ-PDLVILDLMLPDIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I K I++ P+I +TA D+ G + YI+KP + + +K + Sbjct: 60 LSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|218781907|ref|YP_002433225.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218763291|gb|ACL05757.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 884 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 K++IV+D ++++ + + Y NG EAL A+ P D+I++D+ + E+ G Sbjct: 6 AKILIVDDEKIHISVLTKFLSGD-YDVSIALNGAEALMRAKADPPPDLILLDVMMPEMDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D L+ IPVI +T + + R + G +I KP ++ I+ ++ Sbjct: 65 FEVCRRLKSDKSLKSIPVIFLTTKDDEENTARGFELGAVDFIRKPFRPAVLSARIRTHL 123 >gi|222055255|ref|YP_002537617.1| response regulator receiver protein [Geobacter sp. FRC-32] gi|221564544|gb|ACM20516.1| response regulator receiver protein [Geobacter sp. FRC-32] Length = 124 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 72/119 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++IVED E +KL L+ + GY + +G ALE + ++PD++++D+ L E+ G Sbjct: 3 SKKILIVEDEESLLKLESILLSSKGYSVVGVMDGKAALEEVKANRPDLVVLDVMLPEMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + IKE+ E IPV+ +TA D ER ++ G EAYI+KP + +E I+ I Sbjct: 63 FEVCRHIKENPETSSIPVVMLTAKKSNNDVERGKQAGAEAYITKPFKSAKVIEVIEGLI 121 >gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 514 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ EDN +N KL L++ G RNG EA+ + D+++MD+ + I GLE Sbjct: 396 VLLAEDNPVNQKLTTTLLDRWGQRVTLARNGAEAIAAVARDHFDLVLMDVHMPGIDGLEA 455 Query: 65 TKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+ S + +IP+IA+TA M GD G + Y++KP+ + + + + I Sbjct: 456 TRRIRAMSGPVAKIPIIAMTADVMDGDAALCLDAGMDDYVAKPVEPTRLLAALHRAIRR 514 >gi|329851381|ref|ZP_08266138.1| response regulator [Asticcacaulis biprosthecum C19] gi|328840227|gb|EGF89799.1| response regulator [Asticcacaulis biprosthecum C19] Length = 122 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 85/119 (71%), Positives = 103/119 (86%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IVEDNELNMKLF DL++ GY QT G+ AL LARQH+PD+I+MDIQL EISGL Sbjct: 4 KKVLIVEDNELNMKLFHDLLDAQGYETFQTGEGLSALTLARQHRPDLILMDIQLPEISGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+TK +KED EL IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS++ F++T++KY+G Sbjct: 64 EVTKWLKEDDELSHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVTHFLDTVRKYLG 122 >gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+IV+D + + L +E GY +G+E E+A H D II+D+ L + G Sbjct: 1 MKKVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I K+++++ E P++ +TA + ++ + G + Y++KP S + +K + Sbjct: 61 MDICKKLRQEKI--EAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|253570109|ref|ZP_04847518.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251840490|gb|EES68572.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1511 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ R + ++ Y ++ +GME A ++ PD+II D+ + E G+E+T Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASDGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1294 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1295 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1349 >gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 1032 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+DNE N + + L+ G + ++G EA+ A + + D+I MD + + G E Sbjct: 781 KVLVVDDNETNRMVAQKLLLKFGVDSEVRKDGEEAVAAAVEKRYDLIFMDCMMPNMDGYE 840 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ DSE ++ P++A+TA AM+GD E+ + G YI+KPI + +K++I Sbjct: 841 ATQLIRGDSEGSQNRDTPIVALTANAMEGDREKCIRVGMSDYIAKPIRPAELRRVVKQWI 900 Query: 121 GE 122 GE Sbjct: 901 GE 902 >gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRSEGHT--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|13473723|ref|NP_105291.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14024474|dbj|BAB51077.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 230 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ +D+ ++ +E +G L +G AL+ + PD++++DI + E+ Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTLGVADGAAALQEIGRRAPDLVVLDIGMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ ++PV+ ++A + D + G + Y++KP S + + + Sbjct: 61 GLEVCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117 >gi|16330586|ref|NP_441314.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1653077|dbj|BAA17994.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 368 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +++V+D N+ L L++ Y NG +AL++A+ PD+I++DI + I G Sbjct: 11 ATILVVDDTPDNLALMSGLLKDY-YRVKIANNGEKALKVAQTLPPPDLILLDIMMPGIDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +K + Q IPVI +TA + DE + G YI+KP+S I M + + Sbjct: 70 YEVCAHLKANPATQRIPVIFLTAKSEIEDERKGLALGAVDYITKPVSPPILMARVNTQL 128 >gi|15604107|ref|NP_220622.1| response regulator PleD [Rickettsia prowazekii str. Madrid E] gi|3860799|emb|CAA14699.1| unknown [Rickettsia prowazekii] gi|292571833|gb|ADE29748.1| Regulatory components of sensory transduction system [Rickettsia prowazekii Rp22] Length = 450 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D I++D+ + E+ G Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEKIDTILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D IPV+ +TA + D + + G + +++KPI+ + +K Sbjct: 61 FEVCKMIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 63.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ +++ D++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKQMLVKVTKHVKVINNSNE-LDIINEYRSDLVIISSTLENEDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI + + I+ + Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLRR 270 >gi|87303319|ref|ZP_01086112.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87282214|gb|EAQ74175.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 400 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++D+ + + L++ G L +G LELAR+H+P +++ D + + GLE Sbjct: 14 TILLIDDDRILQHILSGLLKAQGCQVLTATDGSTGLELARRHRPQLVLCDWSMAGMDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++ K+D+ L I I +T+ + + G + ++SKP+ S + ++ + Sbjct: 74 VCRRFKQDTHLAPIYFILLTSRSSLVERVEGLDAGADDFLSKPVEPSDLLARVRSGLR 131 >gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] Length = 226 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+E ++ +++ G+ G ALE R+ PD++++D+ L I Sbjct: 1 MKARILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ K I S ++PV+ +TA + D R + G + Y+ KP + + ++ + Sbjct: 61 GIKVCKLI---SAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|293369031|ref|ZP_06615630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292635903|gb|EFF54396.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1321 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ L++ Y+ NG +AL +AR++ PD+I+ D+ + E+ G Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ +K D E IPV+ +TA + D + G +AYI+KP S+++ I+ + Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 241 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + +++ A G E L+ ++ + ++++D+ + + G Sbjct: 12 MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 72 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 128 Query: 122 E 122 Sbjct: 129 R 129 >gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36] gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36] Length = 234 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + L R +E G N +A + R + +I++D+ L ++ Sbjct: 1 MDTHVLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I K+I+ + + +P++ +TA + D + + G + Y++KP S+ +K + Sbjct: 61 GLDICKKIRINDAI--VPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|94500875|ref|ZP_01307401.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] gi|94426994|gb|EAT11976.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65] Length = 294 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 + ++IV+D N+ L +E Y ++ NG +AL+L + H D++++D+++ ++S Sbjct: 1 MTHILIVDDVASNLVLLGSHLEDQDYSVIEATNGPQALDLLQSHDDIDLVLLDVEMPKMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++IK+D +++++PVI VTA + G Y+ KP SLS+ + ++ + Sbjct: 61 GLEVLRKIKQDEQIKDLPVILVTANGDDQNVVDGLDLGAVDYVIKPYSLSVLLARVRSAL 120 Query: 121 GE 122 E Sbjct: 121 RE 122 >gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824] gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018] Length = 229 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ + L + GY ++ NG EA+ KP ++I+D+ L +I G Sbjct: 1 MLKILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+E +P+I ++A D+ + G + YI+KP + F+ +K + Sbjct: 61 IEVCRKIREKL---NVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 229 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++V+D ++ + +E GY +G EALE +++K +II DI + + Sbjct: 1 MVNKILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKYSLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +++ E Q P + +TA + D+ G + YI KP S + +K + Sbjct: 61 GYDLISEVQYLDEEQ--PFLFITAKTTEPDKIYALSLGADDYIVKPFSPRELVLRVKNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] Length = 223 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ ED ++ ++ G+ R+G EAL+ DV+I+DI + I GL Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ PV+ +TA D G + Y++KP + I+ + Sbjct: 62 VLRTLRSRGNTA--PVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118 >gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 252 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 26 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 85 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 86 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 141 >gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica] Length = 239 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + +I++D+ L GL Sbjct: 6 KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESISLIVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 VCQRLRNQNN--SVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|255035362|ref|YP_003085983.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948118|gb|ACT92818.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1378 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+ + +++ + Y ++ NG LE+A +H PD+I+ D+ + E+ G E+ Sbjct: 1128 VLLVEDNDEFREYLKEVFQKD-YRIIEAANGKIGLEMALEHVPDLIVSDVMMPEMDGTEL 1186 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + IK D + IPV+ +TA A + + + + G +AY++KP L I I I + Sbjct: 1187 CRTIKTDRRISHIPVVLLTARAEEEQQLQGYQTGADAYVTKPFRLDILQVRIANLISQ 1244 >gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 236 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ + +++ GY+ Q +G+E L+ ++ D+ I+D+ + ++ G+ Sbjct: 5 RILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNEIDLAIVDVMMPKMDGIT 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T +++E + PVI ++A + + D+ G + YI+KP + + + ++ Sbjct: 65 MTAKLREKYDF---PVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRR 120 >gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 230 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED+ +++++ Y G +A+E + P +I++D+ L +S Sbjct: 1 MKTRILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ KQ++ P++ +TA + D+ G + Y++KP + + I+ + Sbjct: 61 GYDVCKQLRAKKI--NTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 228 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ L +E +G+ +G L D +++D+ + + Sbjct: 1 MALRLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ S +P++ +TA + D + G + YI+KP S + ++ + Sbjct: 61 GIEVVRRIRQKS---SMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] Length = 946 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED ++ TS Y ++ NG E + A Q PD+I+ D+ + +SGL+ Sbjct: 569 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 627 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++E E +IPVI +TA ++ G Y+ KP S + I+ + Sbjct: 628 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLR 685 >gi|312959863|ref|ZP_07774378.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311285810|gb|EFQ64376.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 633 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VEDN +N + ++ + G+ +G EA+ A I+MD +L I G Sbjct: 515 RHVLLVEDNPVNRTVVEAMLRSLGFEVSLATDGAEAIRSAESLIFTAILMDCRLPLIDGY 574 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI++ ++P+IA+TA A++GD E G Y++KP + + +++++ Sbjct: 575 EATRQIRQLPGCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRTDLQQILQRWV 632 >gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 239 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+ L + +GY +G EAL + +PD+I++D+ L + G Sbjct: 9 TVLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDTDGFA 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ PV+ +TA D G + Y++KP + + ++ + Sbjct: 69 VTRELRARGVY--TPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRR 125 >gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 306 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D E L + G+ R+G AL PD++++D+ L +I G Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +P + +TA D+ R G + Y++KP S+S + ++ + A Sbjct: 140 VCERLR--GAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRA 197 >gi|260752397|ref|YP_003225290.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551760|gb|ACV74706.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 241 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +MIVED+ L +++ +GYI +G E E + D+I+MD+ L +G Sbjct: 3 SQTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++T++++ +S+ IPVI ++A + D + G + YI KP + ++ + Sbjct: 63 LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122 Query: 122 EA 123 + Sbjct: 123 RS 124 >gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] Length = 222 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + ++ + ++ G+I +G++AL + + + D++I+DI + + G Sbjct: 1 MANILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPMDLMILDIMMPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +E S +P+I +TA + D+ + G + Y++KP S + + + Sbjct: 61 FSVCKIAREMS---NLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 799 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED++ ++ ++ +++ Y+ +G LELA + D+I++D+ L ++ G++ Sbjct: 2 KLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGIQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q ++ +L P++ VT + + G + Y+ KP ++ + ++ + Sbjct: 62 FCQQRRKKGDL--TPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRR 118 Score = 127 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 58/115 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+MIV+D+ +KL + +E G+ + ++ + PD++I+D+++ EISG Sbjct: 497 TAKIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISG 556 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +E+ + ++ D +P++ ++ + G + YI KPI S + I Sbjct: 557 IELCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS--G 61 ++IV+++ + ++ + + G I + +A E + +PDVI++D+ + Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ K I++ + IP + + ++ + G ++ KP+ +ETI K + Sbjct: 434 LELLKDIRQL--IPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPERIIETIVKVV 490 >gi|328880420|emb|CCA53659.1| putative two-component system sensory histidine kinase [Streptomyces venezuelae ATCC 10712] Length = 1337 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G L NG + +E + +++MD+ + E+ G Sbjct: 1216 RTVLVVDDDARNLYALSGILELHGVTVLHAENGRKGIETLLANPAVSLVLMDVMMPEMDG 1275 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+E S+ ++PVIAVTA AM GD E+ G Y++KP+ + I +++ Sbjct: 1276 YTATARIRELSQYADLPVIAVTAKAMPGDREKSLASGASDYVTKPVDADELIACIGRWL 1334 Score = 38.2 bits (89), Expect = 0.43, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 12/107 (11%) Query: 2 LKKVMIVEDNE-----LNMKLFRDLIETSG-------YIALQTRNGMEALELARQHKPDV 49 ++++++E+ + + + G + EA Sbjct: 1054 TRRLLVIEERPRGLLAVVAENAVTQLSADGGHAERTDIELIAVVGPQEAAAALADQPFHC 1113 Query: 50 IIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 +++D+ + + L + D L+ +PV+A + DEE + Sbjct: 1114 VVLDLDMADGDALRFLAAMDGDEALRTVPVLAHNNRRLPADEEGALQ 1160 >gi|326798534|ref|YP_004316353.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium sp. 21] gi|326549298|gb|ADZ77683.1| integral membrane sensor hybrid histidine kinase [Sphingobacterium sp. 21] Length = 1349 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEIS 60 K V+I +D+ N+ +E L NG EAL+ H K D+++MD+ + E+ Sbjct: 1228 KTVLIADDDIRNIFSLTKALERYKINVLAAENGKEALQTLHAHADKVDIVLMDMMMPEMD 1287 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E T +I+++S + +P++AVTA AM GD E+ G YISKPI + + ++ ++ Sbjct: 1288 GYETTTRIRQESRFKNLPILAVTAKAMMGDREKCIAAGASDYISKPIDIDQLISLLRVWL 1347 Score = 89.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ + D + Y + T G +ELA ++ P I++DI+L +G ++ Sbjct: 963 LIIEDDTNFARALVDFSHKNDYKVVTTVRGDLGIELAEKYMPRAILLDIELPVKNGWQVM 1022 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS---IFMETIKKYI 120 ++IK + + IPV +++ + G +I KP++L ++K + Sbjct: 1023 EEIKSNPTTRHIPVHIMSSH---EVKRESITKGAIDFIRKPMALEQIGQIFNRVEKAL 1077 Score = 65.5 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 50/103 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+EDN + + +E+ +++ + + H+ D +I+D+ + + Sbjct: 1082 RKVLIIEDNLKHAQALAHYLESFDVKTDISKDIHSGVNRLKSHEADCVILDMGIPDAQAY 1141 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 + + IK D+ ++ +PVI T + EE K ++ + K Sbjct: 1142 KTLETIKSDAGMENLPVIIFTGKQLSPSEEIKIKQYADSIVVK 1184 >gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 1302 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED+ GY + NG E LE ++H +I+ D + + G E Sbjct: 1058 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAE 1116 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP++ +TA + + G +AYI KP S+ I+ + Sbjct: 1117 FCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNML 1173 >gi|312135502|ref|YP_004002840.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775553|gb|ADQ05040.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 234 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V +V+D + + L + + GY +G L + +PD++I+DI L +I G E Sbjct: 5 TVYVVDDEKDILDLVSEYLTQKGYAVKTFGSGESFLGEFEKSEPDIVILDIMLPDIDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+I+++S ++P+I ++A + D+ + G + YISKP SLS I+K + Sbjct: 65 ICKRIRKNS---DVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIRKILRR 120 >gi|308070736|ref|YP_003872341.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305860015|gb|ADM71803.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 1239 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++V+D+ N+ ++E+ NG EALEL Q D+++MD+ + E+ G Sbjct: 1119 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALELLEQTPDFDLVLMDMMMPEMDG 1178 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + +++P+IA+TA AMK D + + G Y+ KPI + ++ ++ Sbjct: 1179 YEAMRRIRLMPQFEKMPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1237 Score = 96.0 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED++ K +LI+ G EAL + D +++D+ L +++ Sbjct: 971 MAKRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGQEALNELAIQRYDCMVLDLMLSDMT 1030 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 G E+ +I+E+ +L ++P+I T + EE + E+ I K + S ++ Sbjct: 1031 GFELLDRIRENEQLADLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1085 Score = 95.2 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ + D+ + G+ AL G + L +A+ + PD II+DIQL + G I Sbjct: 854 LIIEDDINFANILYDMARSRGFKALVALQGDDGLNMAQSYLPDAIILDIQLPVMDGWSIL 913 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 ++K +S + IPV ++ + D ++ G AY+ KP S Sbjct: 914 GELKGNSSTRHIPVHVIS---VIDDVKQGLMMGAIAYLKKPSSKESL 957 >gi|297197388|ref|ZP_06914785.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297146701|gb|EFH28290.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 233 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++ ED+E+ +L R + G+ A +G AL+ AR+ PD++++D+ L I Sbjct: 1 MCAHVLVAEDDEMQAELIRRSLLAEGHTATVVHDGRAALDAARRVAPDLVVLDLMLPVID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++ D +IPV+ +TA + + D + G + Y++KP S M I+ + Sbjct: 61 GFGVCRVLRRD---ADIPVVMLTARSDEDDVLLGLELGADDYMTKPYSPRELMARIRTVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|224823780|ref|ZP_03696889.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224604235|gb|EEG10409.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 241 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ ++ RD +E G + NG + L LA ++++D+ + I+G+E Sbjct: 15 KVLLVDDDVELAEMLRDYLEREGCMVALAANGSDGLALALSGDYHLLVLDVMMPGINGIE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S L PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 75 VLRRLRQQSAL---PVLMLTAKGDDLDRVLGLELGADDYVPKPCTPRELLARIRAILRR 130 >gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016] gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 243 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+ +V+D ++ + +E SGY NG++A+ L + PD+II+D+ L +I G Sbjct: 16 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I + +++ S+ +P+I +T + D G + Y++KP S + +K + Sbjct: 76 DICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 132 >gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] Length = 258 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D ++ + + GY + +G EAL++ + PD++I+D+ + + G Sbjct: 14 ATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDGY 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ +S P+I +TA D + G + Y+ KP S I+ + Sbjct: 74 YVCQEIRRES---STPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRR 130 >gi|220917497|ref|YP_002492801.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955351|gb|ACL65735.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter dehalogenans 2CP-1] Length = 434 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ +D ++ ++ Y +G EAL+LAR PD++++DI + + G E+ Sbjct: 133 LVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEVL 191 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++++D +IPVI V+ + R G Y+ KP S +++ + Sbjct: 192 QRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLR 247 >gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 237 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + + ++ GY + NG +AL+ A D I++D+ L +++G Sbjct: 1 MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +++++ + P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 LEIARRVRQS---KTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] Length = 1522 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++IVEDN N ++ R+L+E G +G EA+E+ H D+++MD+Q+ + G Sbjct: 1173 RLLIVEDNLNNQQIARELLEDEGAEVSIANHGKEAIEILEHHPSSFDLVLMDLQMPIMDG 1232 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK I++ L+ +P+IA+TA AM D + G +I KP L+ + I+KY Sbjct: 1233 YNATKYIRKSLGLKNLPIIAMTANAMSSDRDACLAAGMNDHIGKPFDLNNLIHIIRKY 1290 Score = 95.2 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DN L + + E+ ++ +G +AL+L RQ + +D Q+ Sbjct: 1025 RVLVVDDNPTACDLIQRMGESLKWVVDVATSGNDALQLMRQQHESGITYGALFIDWQMPG 1084 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115 + G + +K ++E + P ++ +TA + +R + + Y+ KPI+ S+ +++ Sbjct: 1085 LDGWQTSKCVRELMPVDNGPMIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 1144 Query: 116 I 116 + Sbjct: 1145 V 1145 >gi|319786347|ref|YP_004145822.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317464859|gb|ADV26591.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 238 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E+ G+ +G++ LA ++ D +++D+ L + G+E+ Sbjct: 11 VLVVEDNRNISEMIGEYLESRGFEVDYAADGLDGYRLAAENSYDAVVLDLMLPRLDGIEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 71 CRRLRSDAR-KSTPVLMLTARDTLDDKLTGLGHGADDYLTKPFAIQELEARLRALIRR 127 >gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] Length = 229 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++ +D++ ++L I GY ++ +G EAL D++I+DI + + G+ Sbjct: 2 KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+++++S+ IP+I +TA D+ + G + Y++KP + M +K + Sbjct: 62 EVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118 Query: 123 A 123 + Sbjct: 119 S 119 >gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 246 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + G+ +GM A+ ARQ +PD +++D+ L ++ G + Sbjct: 21 RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGFQ 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E + +PV+ +TA + G + Y++KP SL + ++ + + Sbjct: 81 VLRRLRE--QFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS 138 >gi|253996017|ref|YP_003048081.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylotenera mobilis JLW8] gi|253982696|gb|ACT47554.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylotenera mobilis JLW8] Length = 332 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D N+K+ + +++ Y +NGM+ALEL + +P +I++D+ + +++G E Sbjct: 11 KVLIVDDEPFNLKVLKQILQDH-YRLSFAKNGMDALELVKTEQPQLILLDVMMPDMTGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K D Q IPVI VTA + + DE G YI+KP+ ++ +K ++ Sbjct: 70 VCAKLKADPNTQNIPVIFVTALSDENDEATGLTHGAVDYITKPVYPAVVKARVKTHL 126 >gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ DVI++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|156936560|ref|YP_001440474.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC BAA-894] gi|156534814|gb|ABU79638.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC BAA-894] Length = 230 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V+++ED+ + + Y +G LE A++ KPD++++D+ L ++G Sbjct: 3 TKRVLVIEDDADAASVLEAYLRRENYDVAIAGDGRSGLEKAQRWKPDLVLLDVMLPVMNG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ S ++PVI VTA D + G + Y+ KP + ++ + Sbjct: 63 TEVLATLRRSS---DVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 232 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ DVI++D+ + E+ G E Sbjct: 11 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 70 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 127 >gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 233 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L +E +GY G E AR + PD++I+D+ L + G Sbjct: 1 MPNILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + ++ DS +P++ +TA D+ + G + Y++KP + + ++ + Sbjct: 61 LQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|330504532|ref|YP_004381401.1| two component transcription regulator protein [Pseudomonas mendocina NK-01] gi|328918818|gb|AEB59649.1| two component transcription regulator protein [Pseudomonas mendocina NK-01] Length = 240 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + ++IV+D+ +L + +GY G+E + + D++++D+ L Sbjct: 1 MSRPDHILIVDDDPEIRQLLSTYLSDAGYQTCVASQGVEMRKRLEEQLIDLVVLDLMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL + ++++ IPVI +TA D + G + Y+ KP + IK Sbjct: 61 EDGLSLCRELR---VRSNIPVIMLTARGTLVDRIVGLEMGADDYLPKPFDPRELLARIKV 117 Query: 119 YIGE 122 + Sbjct: 118 VLRR 121 >gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 234 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D+ ++L RD +E + L + +AL L +QH I++D+ + +G Sbjct: 5 RTILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVMMPGQNGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I+ S +P++ ++A D+ R G + YI K S + +K + Sbjct: 65 ELCRTIRSSS---SVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC 14672] Length = 1334 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 + +++V+D+ N+ ++E G+ L NG + ++ + PD +++MD+ + E+ Sbjct: 1214 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNN-PDVALVLMDVMMPELD 1272 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G T +I+ E+P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1273 GYAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1332 Score = 39.3 bits (92), Expect = 0.20, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 13/82 (15%) Query: 46 KPDVIIMDIQLQEISGLEITK---QIKEDSELQEIPVIAVTAFAMKGDEERIRKG---G- 98 +++++ + E E+T+ ++ DS L +PV+ + E + G Sbjct: 1106 PCHCVVLELGMAEE---EVTRFLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGT 1162 Query: 99 CEAYISKPISLSIFMETIKKYI 120 ++S SL E I ++ Sbjct: 1163 ALEFLS---SLDELRERIALHL 1181 >gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] Length = 230 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + NG E L L D+I++D+ + +++G Sbjct: 1 MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALLNDQ-IDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E E PV+ +TA + D + G + Y+ KP S M I+ + Sbjct: 60 METLKRLRE---TWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] Length = 253 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + G+ +G A+ D +++D+ L I G E Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLPGIDGFE 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 84 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|239787729|emb|CAX84244.1| Sensor protein [uncultured bacterium] Length = 817 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +D L + ++E G+ NG++A+E+ Q P +I MD+++ ++G E Sbjct: 598 RILVADDLPEARLLLKKMLEEVGFQVHDACNGLQAVEVFNQWHPHLIWMDMRMPLMNGFE 657 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+IK + + PVIA+TA + + +++ + GC+ Y++KP + K++ Sbjct: 658 ATKRIKATPDGRHTPVIALTASVFEQERQQVLEAGCDDYLAKPFREQDLFALMAKHL 714 >gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 1514 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN + L++ Y+ +G+ ALE +Q +PD+++ DI + ++GL Sbjct: 648 ARILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGL 706 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q++ Q++P+I ++A A + + + Y+ KP S + ++ + Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACL 764 >gi|170077561|ref|YP_001734199.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002] gi|169885230|gb|ACA98943.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002] Length = 584 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 64/116 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED+++ KL R ++ Y L+ G + ++LA H+PD+I+ D+ + I G Sbjct: 1 MTTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAHQPDLIVCDVMMPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + ++++ ++ IP + +TA A K D + + G + Y++KP + + I Sbjct: 61 YGVLQKLQAEAATAMIPFVFLTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAIA 116 >gi|120612957|ref|YP_972635.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591421|gb|ABM34861.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 248 Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + ++ G A Q +G+EAL L RQ KPD++++DI L + GL++ Sbjct: 14 VLVVEDEPGIATILSAYLQRDGLRARQAHDGLEALRLFRQLKPDMVLLDIHLPGMDGLDL 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ED + PVI VTA A D+ + G + Y+ KP S + ++ + Sbjct: 74 LRAIREDGQT---PVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVL 126 >gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED + + ++ GY NG LE A D I++D+ L EI+G Sbjct: 1 MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ + + P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVCRRIRRE---KITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 246 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ + + G+ +G A++ A+ +PD++++D+ L GL Sbjct: 20 RRILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQAWQPDLLVLDVMLPGFDGL 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 80 EVCRRVQA---TRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136 >gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + + Y +G EAL+ + DV+I+DI L ++ G E Sbjct: 9 RILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ + PV+ +TA D + G + Y+ KP + I+ + + Sbjct: 69 VLKRIRNKGI--QTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRK 125 >gi|257453899|ref|ZP_05619176.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus SK60] gi|257448671|gb|EEV23637.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus SK60] Length = 245 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEI 59 K V+++ED+ +L + + + Y E LE D++I+D+ L ++ Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G+++ ++I++ DS L + +I +TA D + G + Y+SKP + I+ Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 118 KYIGE 122 + Sbjct: 128 AVMRR 132 >gi|237722776|ref|ZP_04553257.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447298|gb|EEO53089.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1331 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+++TS Y NG +AL + R+ PD +I DI + E+SG Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDFVISDIMMPEMSGD 1124 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK D E+ IPV+ +TA + + + G +AYI+KP S+ I TIK + Sbjct: 1125 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1184 Query: 122 EA 123 A Sbjct: 1185 RA 1186 >gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366] gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1161 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 K ++I +D+ N+ ++ + NG EA+ + +P D+++MDI + E+ G Sbjct: 1042 KTILITDDDMRNIFALSSALQAYDLKIVIANNGREAISKLEETEPIDLVLMDIMMPEMDG 1101 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ E ++P+IA+TA AMK D+E+ + G YISKP+ + + ++ ++ Sbjct: 1102 YEAMRTIRSKKEFAKLPIIALTAKAMKNDKEKCIEAGANDYISKPVDMDKLLSMLRVWL 1160 Score = 110 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVED+ + + D G+ + +G ALE+A PD I++DI L + G Sbjct: 767 QKLLIVEDDLVFADVLNDYAIEKGFKPILAHSGDVALEMAFSELPDAIVLDIMLPVMDGW 826 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 I K++K D + IPV ++A K + +K G ++ KPI E Sbjct: 827 TILKKLKADPRTKHIPVHMMSAGNEKAGK--AKKEGAIGFLKKPIEKEQLDEA 877 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 49/88 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+++ED EL+ KL + G Q G EAL L + D II+D++L +ISG + Sbjct: 892 KVLLIEDQELHSKLLAQQLTEKGVDVKQAFTGKEALVLLDEQTFDCIILDLKLPDISGFD 951 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE 91 + IK +L ++PVI TA + D+ Sbjct: 952 LLDSIKSQEKLVQVPVIINTAMELDQDK 979 >gi|213962318|ref|ZP_03390581.1| two-component system sensor histidine kinase/response regulator hybrid [Capnocytophaga sputigena Capno] gi|213954984|gb|EEB66303.1| two-component system sensor histidine kinase/response regulator hybrid [Capnocytophaga sputigena Capno] Length = 1347 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ + ++ + + L R+G E LELA H PD+I+ DI + + G+ Sbjct: 1095 TILVVEDNDDMRDYIQHIL-SEHFHVLLARDGEEGLELAIAHIPDLIVSDIMMPKRDGIS 1153 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K+++ + + IP+I +TA + G E YI+KP S I + I+ + Sbjct: 1154 MVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENIL 1210 >gi|209522750|ref|ZP_03271308.1| response regulator receiver modulated diguanylate cyclase [Arthrospira maxima CS-328] gi|209496799|gb|EDZ97096.1| response regulator receiver modulated diguanylate cyclase [Arthrospira maxima CS-328] Length = 259 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ N + + Y +G +AL + KPD+I++D+ + + G+E+ Sbjct: 4 ILIVDDDPDNFDVVETCLIDENYHLHYAYSGQDALSVINVIKPDLILLDVMMPVMDGIEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK E + P+I VTA + G + +I+KP++ + I+ + Sbjct: 64 CRRIKAMGEWKGTPIIMVTALSSTESLAECLGAGADDFIAKPVNGLELLARIRSMLR 120 >gi|189466428|ref|ZP_03015213.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM 17393] gi|189434692|gb|EDV03677.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM 17393] Length = 1396 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED+E + Y+ NG EAL H PD+II D+ + E+ GL Sbjct: 1135 RHVLVVEDDEEIRHYICRELGNDFYMTECC-NGKEALASILYHTPDLIISDVMMPEMDGL 1193 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++ + +P+I +TA + D G +AY+ KP S+ + +T+ I Sbjct: 1194 TLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNIIRR 1253 >gi|168178399|ref|ZP_02613063.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] gi|182670659|gb|EDT82633.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] gi|322805312|emb|CBZ02876.1| two component transcriptional regulator, winged helix family [Clostridium botulinum H04402 065] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D++ + + Y L+ NG +A+ +++ +I++D+ + + G Sbjct: 1 MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNTLHENEIHLILLDVMMPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ +P++ ++A + D+ G + YI+KP + +K + Sbjct: 61 IEVAQKIR---TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|58337702|ref|YP_194287.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227904348|ref|ZP_04022153.1| two component response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255019|gb|AAV43256.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227867996|gb|EEJ75417.1| two component response regulator [Lactobacillus acidophilus ATCC 4796] Length = 221 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED +++ ++ +GY NG++A+E A+++ DVII+DI + + G+ Sbjct: 2 KILVAEDEPQLLRVLTVAMQKAGYEVDPVDNGLKAVEHAKKNCYDVIILDIMMPVMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 KQI+E + + ++ +TA A D G + Y++KP SL + ++ Sbjct: 62 ALKQIRESGD--KTYILMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRS 114 >gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 240 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D ++ R + GY +G AL+L HKPD++I+D+ L ++ G Sbjct: 1 MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++ +P++ ++A + + + G + Y++KP + + ++ I Sbjct: 61 IDVIGGVR---GWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + + + GY G AL+ + KPD+I++D+ + +I Sbjct: 1 MSQSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEK-KPDIILLDVNMPDID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ + P+I +TA D+ + G + Y+ KP S+ I ++ Sbjct: 60 GFTVCERIR---DYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|317130175|ref|YP_004096457.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475123|gb|ADU31726.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + KL + S + + NG EA +++ D+II+DI + EI Sbjct: 1 MEAKILLVDDEQEMRKLLKVCFSASPFQLDEASNGDEAFLKVQENNYDLIILDIMMPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ + + EIPVI +TA K G + Y+ KP + ++ + Sbjct: 61 GFELLNMLRVELDT-EIPVILLTALGDTERVVEGLKRGADDYVVKPFEPKELVARVESVL 119 Query: 121 GEA 123 + Sbjct: 120 RRS 122 >gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ + ++ + T G+ +G+ +LA ++ D+ ++D+ + +++G Sbjct: 1 MHKILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSNQFDLAVLDVMMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E I++ S+ IPVI +TA + D + G + Y+ KP + I+ + Sbjct: 61 IETLGLIRKSSQ---IPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] Length = 225 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED E + + GY + +G L+ A D++++D+ L ++ Sbjct: 1 MAQKILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+++S +PVI +TA D+ G + Y++KP ++ + I+ + Sbjct: 61 GLEVLRRIRKESV---VPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVAL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|152987665|ref|YP_001346520.1| two-component sensor [Pseudomonas aeruginosa PA7] gi|150962823|gb|ABR84848.1| probable two-component sensor [Pseudomonas aeruginosa PA7] Length = 795 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 60/117 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N + R ++ GY NG EALE + +PD +++D Q+ + G Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALESLARERPDGVLLDCQMPVMDGFA 728 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 729 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785 >gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1] gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1] Length = 222 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++EDN ++ + +E +GY + +G+ L AR++ PD++I+D+ L + Sbjct: 1 MEQRILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ +P+I +TA + + + G + Y++KP + +K + Sbjct: 61 GAEVARRLRK---TSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|17228672|ref|NP_485220.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130524|dbj|BAB73134.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 440 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 66/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V+IV+DN N+K+ D I + G+ L +G A+E A +PD+I++D+ + E+ G Sbjct: 10 ATVLIVDDNPTNLKVLSDAISSLGWEILIATDGESAIEEAEYAQPDIILLDVMMPEMDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K + ++IPVI +TA + D+ G YI+KP +L + I+ ++ Sbjct: 70 QTCAELKSKTSTKDIPVIFLTALTDQFDKVLALVTGGVDYITKPFNLDEVLVRIQVHL 127 >gi|330890756|gb|EGH23417.1| sensor histidine kinase/response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 647 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 523 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIAKLNEVEDIDLVLMDVMMPEMDG 582 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 583 YEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 642 Query: 122 E 122 + Sbjct: 643 K 643 Score = 92.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 257 ILVIEDEVRFAQILFDLAHELGYDCLVAHAADEGFNLASRYTPDAILLDMRLPDHSGLTV 316 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ ++ +E G Y KP + + K Sbjct: 317 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 368 Score = 77.9 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R++ D +I+D++L ++ G Sbjct: 377 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRENVYDCMIIDLKLPDMLGN 436 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 437 ELLKRMSTEDICAFPPVIVYTGRNMTRDEEA 467 >gi|325263737|ref|ZP_08130470.1| phosphate regulon transcriptional regulatory protein PhoB [Clostridium sp. D5] gi|324030775|gb|EGB92057.1| phosphate regulon transcriptional regulatory protein PhoB [Clostridium sp. D5] Length = 298 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+ + L D++E GY + +G+EA+ LA + KPD+ I+DI L ++G Sbjct: 1 MSKILVVEDDVASQILMTDILEKYGYNVVVAMDGLEAISLAEKEKPDLAIVDIMLPTLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ ++++ + +E+PVI +TA R + G ++SKP + IK + Sbjct: 61 YQVCERLRCLPQCKELPVIILTALNEDQHRIRALEAGAIDFLSKPFKRVELLTKIKAVL 119 >gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] Length = 239 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L+R ++E +G+ + NG +AL+ ++II D+ + E+ G Sbjct: 18 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ + ++PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 78 YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 135 Query: 122 EA 123 + Sbjct: 136 RS 137 >gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 253 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IVED ++ D + GY L +G LE R +PD++I+D+ L ++SG Sbjct: 17 ATILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVMLPQLSGF 76 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + + + + PV+ ++A D + G + Y+ KP L F+ ++ + Sbjct: 77 DLCRTRRTEGDA--TPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRR 134 >gi|254448684|ref|ZP_05062142.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] gi|198261692|gb|EDY85979.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] Length = 244 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED++ D +E G+ +G A+ LA ++ D I++DI L G E+ Sbjct: 20 ILIVEDHQDLAANIGDYLEAGGFAPDFAADGPSAVNLAAENPYDAIVLDIMLPGFDGYEV 79 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ L +P+I +TA D+ + G + Y+ KP + +K +I Sbjct: 80 CRRLRQQVGLS-VPIIMLTARDQLDDKILGFEQGADDYLIKPFEMKELEARLKAHIRR 136 >gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1415 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +DN L+ + Y +G+ ALE ++ +PD+++ D+ + + GL Sbjct: 644 HILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLG 702 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++ D + ++PVI ++A A + + + G + Y+SKP S + ++ + A Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762 Score = 98.3 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGL 62 +++VEDN + L+ GY + +G +AL L + + D+++ D+ + + G+ Sbjct: 1300 ILVVEDNAEVGEFSTQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGV 1359 Query: 63 EITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK+ L E+PV+ + +A M DE+ + + KP S+ + ++K + Sbjct: 1360 TLGREIKK--RLPELPVVLNSGYAHMLADEDHGFEL-----LHKPYSVEDLSKVLRKAMA 1412 Query: 122 E 122 + Sbjct: 1413 D 1413 >gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V+IVEDN +L R + G A+ G LE R+ D++++D+ L + Sbjct: 1 MTRNVLIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERFREGDIDLVVLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++I+ +PV+ +TA + + D + G + Y++KP S++ +K Sbjct: 61 GLSVCREIRSGPGY--VPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|17228726|ref|NP_485274.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130578|dbj|BAB73188.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 387 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 67/116 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED+ + DL+E G+ L+ NG+ ++LA++ PD+II D+ + E+ G Sbjct: 1 MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEEIPDLIICDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ K +++ E IP+I +TA + K D + + G + YI KP + + + I Sbjct: 61 YEVLKALRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIA 116 >gi|255007701|ref|ZP_05279827.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] Length = 1362 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+EDN + R L Y L+ +G E +++A + PD+II D+ + G Sbjct: 1114 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKEIPDLIISDVMMPVKDGF 1172 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E E IP++ +TA A D + + G + Y+ KP + + ++ I Sbjct: 1173 ACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLI 1230 >gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC 15579] gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC 15579] Length = 217 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++VED +L +E +GY ++ +G A+ D+I++DI L ++ G Sbjct: 1 MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYFDIILLDIMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I +IK + IPVI VTA D + K G + YI+KP + I+ + Sbjct: 61 FSIISKIK----GKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMDI + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 AMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 >gi|158337180|ref|YP_001518355.1| response regulator [Acaryochloris marina MBIC11017] gi|158307421|gb|ABW29038.1| response regulator [Acaryochloris marina MBIC11017] Length = 121 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++KV++V+D+ +L + +E G L +G+EALE + +PD++++DI + +G Sbjct: 1 MQKVLVVDDSITQRQLMSNALEDMGLTVLIATDGVEALEQIQSTQPDIVVLDIVMPRKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++IK + Q +PV+ ++ D K G +AY++KPI + +++ + Sbjct: 61 YEVCREIKSNPTTQNVPVVICSSKTEDFDRYWGMKQGADAYLTKPIQPRELLVIVRQLL 119 >gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEI 59 +KKV+++ED ++ +GY A++ G EAL R++ PD+ ++DI L ++ Sbjct: 1 MKKVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRN-PDIKVALLDIMLPDM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++I+ +I +I +TA + D+ G + Y++KP S + I Sbjct: 60 DGFEVCRRIRASD--SQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDAL 117 Query: 120 IGE 122 Sbjct: 118 YRR 120 >gi|119511391|ref|ZP_01630503.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119463936|gb|EAW44861.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 295 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 61/115 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+ED+ L+ +E G+ + NG +E A+ + PD+++ DI + ++ G Sbjct: 7 KTILIIEDDATTRNLYAKGLEAEGFKTIVAENGRIGIEKAQTYLPDLVVCDIVMPDMDGY 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + +++++D IP I +T + D + + G + Y++KP +L ++ I Sbjct: 67 SVLQRMRQDPVTAIIPFIFLTGSDHQTDIRKGMELGADDYLTKPCTLEQLLKAIA 121 >gi|71907073|ref|YP_284660.1| PAS [Dechloromonas aromatica RCB] gi|71846694|gb|AAZ46190.1| PAS protein [Dechloromonas aromatica RCB] Length = 794 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ ED +N ++ L+E G +G+EAL+LA + +++MD+Q+ + GL Sbjct: 662 RRILLAEDEPINREITLSLLEDVGLTVDIAEDGIEALKLAGANNYALVLMDMQMPGMDGL 721 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T+ I+ ++ ++A+TA A D++R G +ISKP+ + + K++ + Sbjct: 722 EATRSIRRLPVSGDVLILAMTANAFVEDKQRCLDAGMNDFISKPVDPKLLFNKLLKWLSQ 781 >gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila] gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila 130b] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I++D+ L +E G+ + +G ++ A D II+D+ L +++ Sbjct: 1 MSSSILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+E E PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 61 GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|53718676|ref|YP_107662.1| putative two-component system, response regulator [Burkholderia pseudomallei K96243] gi|76812145|ref|YP_332663.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1710b] gi|126441195|ref|YP_001058144.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126452418|ref|YP_001065379.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281110|ref|ZP_01767819.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305] gi|167823237|ref|ZP_02454708.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 9] gi|167851424|ref|ZP_02476932.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei B7210] gi|167900223|ref|ZP_02487624.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 7894] gi|167916733|ref|ZP_02503824.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 112] gi|167918062|ref|ZP_02505153.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei BCC215] gi|217419788|ref|ZP_03451294.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226194482|ref|ZP_03790080.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237811364|ref|YP_002895815.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei MSHR346] gi|242317517|ref|ZP_04816533.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254181365|ref|ZP_04887962.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254190765|ref|ZP_04897272.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254196970|ref|ZP_04903394.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254260088|ref|ZP_04951142.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254298308|ref|ZP_04965760.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|52209090|emb|CAH35031.1| putative two-component system, response regulator [Burkholderia pseudomallei K96243] gi|76581598|gb|ABA51073.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1710b] gi|126220688|gb|ABN84194.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126226060|gb|ABN89600.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134247416|gb|EBA47501.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305] gi|157808251|gb|EDO85421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157938440|gb|EDO94110.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|169653713|gb|EDS86406.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184211903|gb|EDU08946.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217397092|gb|EEC37108.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225933567|gb|EEH29556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237503023|gb|ACQ95341.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei MSHR346] gi|242140756|gb|EES27158.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254218777|gb|EET08161.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + + + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium 2_1_46FAA] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K K++IV+D + + + + +E GY N E L+ + PD+I++DI + Sbjct: 1 MKEKYKILIVDDEQSILDMLKLQLEFEGYAVFTAGNAKETLDKV-SYGPDIILLDINMAG 59 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++GL++ I+ + P+I +TA + D+ G + YI+KP S++ + I Sbjct: 60 MNGLDLCASIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISA 116 Query: 119 YIGE 122 ++ Sbjct: 117 HLRR 120 >gi|330817959|ref|YP_004361664.1| Putative two-component system, response regulator [Burkholderia gladioli BSR3] gi|327370352|gb|AEA61708.1| Putative two-component system, response regulator [Burkholderia gladioli BSR3] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + + + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ +G + L L ++ +PD+I++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRR 121 >gi|295086435|emb|CBK67958.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1339 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED+E + +++RNG EALE + PD++I DI + E+ GL Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1142 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +TA + D G +AYI KP ++ I +T++ I Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199 >gi|294810650|ref|ZP_06769299.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442119|gb|EFG10937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1321 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ L++ Y+ NG +AL +AR++ PD+I+ D+ + E+ G Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ +K D E IPV+ +TA + D + G +AYI+KP S+++ I+ + Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|237719759|ref|ZP_04550240.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451028|gb|EEO56819.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1348 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED+E + +++RNG EALE + PD++I DI + E+ GL Sbjct: 1093 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +TA + D G +AYI KP ++ I +T++ I Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1208 >gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED + L++ G+ A+ +G AL ++ D++++D+ L +SG Sbjct: 1 MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCRRLRQ---VSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|198276106|ref|ZP_03208637.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135] gi|198270918|gb|EDY95188.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135] Length = 1237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 + VEDN+ + + ++ + + +G AL K D+I+ DI + ++G E+ Sbjct: 986 LFVEDNDDLRNVMKRILTDH-FDLTEASSGETALLQLEDKKIDIIVSDIMMPGMNGFELC 1044 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IKE E + IPVI +TA D + G + YI KP+++S+ + I+ + Sbjct: 1045 KKIKERFETKHIPVILLTAKTSDMDRITGYEVGADGYICKPLNISVLLAKIENLL 1099 >gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 2724 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D N + R ++E G+ + NG E LE AR+ +PD+I++DI + + G Sbjct: 2519 RKILIVDDRWENCAVLRSVLEPIGFEIQEAENGQEGLENAREWQPDLILVDIVMPVMDGH 2578 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++T+++++ SE P+IA++A A + + GC +I+KPI+ ++ ++ Y+ Sbjct: 2579 QMTQELRQISEFNTTPIIAISANAFATNRVESLEAGCTDFITKPIATEELLQKVQVYL 2636 >gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 225 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D + + G+ + +GMEA+++ R+ + D+I+MD+ + E+ G Sbjct: 1 MYKILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVCREKEFDIIVMDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IK+ + PV+ ++A + D+ + G + Y+ KP S M I + Sbjct: 61 FSACKEIKK---FSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVK 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis SK2] gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax borkumensis SK2] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED +L D + + + QT + A+ +A + II+D+ L + G Sbjct: 1 MSHILIVEDEPRLSQLVADYLHHAHFQTKQTDSAKAAMAMAHEQSFQAIILDLMLPDGDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K I++ S +P+I VTA + D + G + YI KP S + +K + Sbjct: 61 MEVCKTIRQHS---NVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ KL + +GY + + +ALE + D++++D+ L + G E+ Sbjct: 6 ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLPGMDGFEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++ +++P+I VTA + D + G + Y+ KP S I+ + Sbjct: 66 CRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKR 123 >gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED L+ GY G + L ++ D++++D+ L +SG Sbjct: 1 MSRILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ + +++ S +PVI +TA + D+ + G + Y++KP S + +K + Sbjct: 61 IDVCRALRQRS---SVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + ++ G ++G+EA+E+ + K +II+DI + G+ Sbjct: 6 VLVVDDEQEIRNGIAIYLKNEGIKVFTAKDGIEAIEILNKEKVHLIILDIMMPRQDGIST 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E + IP+I ++A + D+ + G + Y++KP + + +K + Sbjct: 66 TFKIREQ---KNIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRR 120 >gi|294665326|ref|ZP_06730618.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604919|gb|EFF48278.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1068 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 948 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 1008 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067 Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + +L + + N EAL LA + +P I++DI L + SGL + Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 741 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A + + G Y+ KP + + I++ Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793 Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + L+ + + EA++ D ++ D+ L + SG Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDKLAGSTFDCMVTDLALPDGSGY 861 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 922 SVEASLPSDQQRLLREA 938 >gi|260769481|ref|ZP_05878414.1| signal transduction response regulator [Vibrio furnissii CIP 102972] gi|260614819|gb|EEX40005.1| signal transduction response regulator [Vibrio furnissii CIP 102972] Length = 305 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N++L L++ Y L +G +AL + R+HKPD+I+MD+ + +++G + Sbjct: 7 TVLVVDDQPTNIQLIYQLLKKE-YDVLMATSGQQALAVCREHKPDLILMDVLMPDMNGWD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D ++ IPVI VTA + DE G ++ KPI+ + ++ ++ Sbjct: 66 TCQTLKRDPDIATIPVIFVTALTDQDDENACWDAGAVDFLQKPINANTLKHRVRAHL 122 >gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator KdpE [Eubacterium eligens ATCC 27750] gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator KdpE [Eubacterium eligens ATCC 27750] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++VED+ L ++T+ Y L NG A+ H PD+I++D+ L +I Sbjct: 1 MNKTQILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQTASHNPDIILLDLGLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ K+I+ P+I ++A D+ G + Y++KP S+ + ++ Sbjct: 61 DGVEVIKKIR---TWTNTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVT 117 Query: 120 IGE 122 + Sbjct: 118 VRR 120 >gi|229589354|ref|YP_002871473.1| putative two-component system sensor kinase [Pseudomonas fluorescens SBW25] gi|229361220|emb|CAY48084.1| putative two-component system, sensor kinase [Pseudomonas fluorescens SBW25] Length = 633 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VEDN +N + ++ + G+ +G EA+ A I+MD +L I G Sbjct: 515 RHVLLVEDNPVNRTVVEAMLRSLGFEVSLATDGAEAIRSAESLIFTAILMDCRLPLIDGY 574 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI++ ++P+IA+TA A++GD E G Y++KP + + +++++ Sbjct: 575 EATRQIRQLPGCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRTDLQQILQRWV 632 >gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 772 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ ++ K+ L+E+ G+ +G+EAL + D+++MD+Q+ + G E Sbjct: 548 VLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGREAFDLVLMDVQMPVMDGFEA 607 Query: 65 TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + I+ +P+IA+TA A+ GD E + G + Y++KP++ S I ++ Sbjct: 608 MRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISRH 664 >gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614] gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D ++ + GY + +G EALELA H PDV+I+D+ L ++ G Sbjct: 1 MSRVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGLPDLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++ +P++ ++ + D+ G + Y++KP + M ++ + Sbjct: 61 VDVIAGLR---GWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|329934222|ref|ZP_08284301.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305818|gb|EGG49673.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 255 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ + + +E GY +G+ LEL R+ + D++++D+ L + G+ Sbjct: 8 TILLVEDDTVIRRSVTMALERYGYRVTAAADGLTGLELFREGRHDLLLLDVMLPGLDGIG 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E S PV+ ++A D + G + Y+ KP+ ++ + I+ + A Sbjct: 68 LCRRIRETSMD---PVLMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRA 124 >gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ ++ G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G + L+ ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLR---VRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I +DNE + ++ G I + +G EALE ++ D++I+D+ + +I G Sbjct: 1 MKKILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENVDLVILDLMMPKIFG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ SE +P+I +TA + D+ + G + YI KP S + IK Sbjct: 61 TEVCKEIRKISE---VPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332526423|ref|ZP_08402544.1| response regulator receiver protein [Rubrivivax benzoatilyticus JA2] gi|332110554|gb|EGJ10877.1| response regulator receiver protein [Rubrivivax benzoatilyticus JA2] Length = 130 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++ +ED +L R +E GY ++ +G E L LAR+ PD+I++D+ + + Sbjct: 1 MAYTILSIEDQPDIRRLIRMTLEFKGYEVVEAGDGEEGLALARRSPPDLILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +Q+ D E+PV+ ++A + E G + Y+ KP S ++ + + Sbjct: 61 GHEVARQLHADPRTNEVPVVMISALGQTSEIEAGLLSGAQHYLVKPFSPWALLDITAQLV 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++ + G+ ++G+ A+ L +Q +P V+I+D+ + + G E Sbjct: 11 KILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVMMPGMDGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K+ + VI +TA D + G + Y+ KP S + I I Sbjct: 71 VCRMLKKMD---NVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIR 125 >gi|294807181|ref|ZP_06765997.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294445632|gb|EFG14283.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 965 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + + + +G+EAL+L + H PD+II D+ + ++G E+ Sbjct: 709 VLVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQLTKSHAPDIIISDVMMPRMNGYEL 768 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--GE 122 K IKED + IP++ +TA K + K G +AY++KP + + ME I+ + E Sbjct: 769 CKNIKEDITISHIPIVLLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKNRE 828 Query: 123 A 123 + Sbjct: 829 S 829 >gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ A+ NG EAL + DV+++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S +P+I +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRSRS---SVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 254 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +MIVED + + +E G+ NG A E Q + D++++DI L ++ GLE+ Sbjct: 31 IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPDMDGLEV 90 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++++E + ++P+I +TA D+ G + YI+KP ++ + ++ I Sbjct: 91 CRRVRE---ISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIR 144 >gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E3 str. Alaska E43] gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E3 str. Alaska E43] gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED++ L +ET Y NG A+ A + PD++I+D+ L ++ Sbjct: 1 MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+EI K+I+ IP+I V+A + D+ G + Y++KP S+ + ++ Sbjct: 61 DGIEIIKKIR---TWSNIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVS 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|160885437|ref|ZP_02066440.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483] gi|156109059|gb|EDO10804.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483] Length = 1339 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED+E + +++RNG EALE + PD++I DI + E+ GL Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKAPDLVISDIMMPEMDGLT 1142 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +TA + D G +AYI KP ++ I +T++ I Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199 >gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 245 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D L ++ + + + +AL + K D+ I+D+ L E Sbjct: 15 MSENILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVMLPETD 74 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 75 GFQICRKIREKYNY---PVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQL 131 Query: 121 GE 122 Sbjct: 132 RR 133 >gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + ++ GY NG L+LA + D++I+D L SGL+ Sbjct: 2 RILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGYDLLILDWMLPYQSGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + + PV+ +TA D G + Y+ KP L + ++ + + Sbjct: 62 ICQKLRTEGKT--TPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRRS 119 >gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D+E ++ +++ G+ NG EA L + PD++++D+ + ++ G++ Sbjct: 7 KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQVDGID 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I++ E PVI +TA D+ + G + YI KP + +K + Sbjct: 67 VLKWIRKQGER---PVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122 >gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5] Length = 1816 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 2/123 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 KK++IV+D+ N+ L+E G + NG LE+ + + D+++MD+ + E+ Sbjct: 1685 SKKILIVDDDVRNVFAITALLEQHGASVVYAENGRRGLEVLKANPGVDLVLMDVMMPELD 1744 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E + I+ E + +P+IA+TA AMKGD E+ + G Y++KP+ + ++ ++ Sbjct: 1745 GYETMRAIRHLPEFERLPIIALTAKAMKGDREKCVESGASDYVTKPVKAEQILSLLRVWL 1804 Query: 121 -GE 122 Sbjct: 1805 YRR 1807 Score = 44.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V + + G+ Q + +A+ AR+ +PD I++++ + Sbjct: 1545 ILVVVPDARLAATVEAVARDRGFAVWQA-DASDAVRTARERRPDGIVIEVGAAAGPEWSV 1603 Query: 65 TKQIKEDSELQEIPVIAV 82 +++KED + +EIP+ + Sbjct: 1604 LERLKEDHDTREIPLHVL 1621 >gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+E L + ++ Y +Q NG +A+ ++I+D+ L I G+E Sbjct: 5 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E S +P+I ++A + D G + YI KP S+ +K + Sbjct: 65 VLRKIRESS---TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRR 120 >gi|119489834|ref|ZP_01622589.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] gi|119454262|gb|EAW35413.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106] Length = 506 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 70/124 (56%), Gaps = 5/124 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D N++L L+ + GY +G AL+ ++ PD+I++D+ + EISG E+ Sbjct: 14 ILIIDDTPENLQLMVQLLTSVGYQVRAYISGNIALQGIKKTPPDLILLDVMMPEISGYEV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----KY 119 +++K D E Q+IPVI ++A D+ + + G YI+KP + + ++ + Sbjct: 74 CQKLKSDPETQDIPVIFISAMNTAIDKVKAFQVGGVDYITKPFHVEEVLARVQIQLENRC 133 Query: 120 IGEA 123 + ++ Sbjct: 134 LRQS 137 >gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS [Shewanella putrefaciens 200] Length = 1234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 72/116 (62%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL++ D ++MDIQ+ + GL Sbjct: 1112 VLLVEDNFINQQVATELLKSAGYEVVLADNGQVALDIIDSRPFDAVLMDIQMPVMDGLTA 1171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E +E+P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1172 ARALRERYSPEELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1227 Score = 97.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ ++ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSAVMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGSD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + L + P +I +TA++ + + + A + KP S + I Sbjct: 1028 VISAIDTMVAEGRLDKRPVIIMMTAYSAEPLQYEVESANVFAVLQKPFKASSLFDEI 1084 >gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQE 58 M +++VED E ++ Y L ++G+EAL++ ++ D+II+D L + Sbjct: 1 MTNTILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++I+++ +IPVI +TA GD+ G + YI+KP + + I+ Sbjct: 61 LDGLEVLRRIRKND---DIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRV 117 Query: 119 YIG 121 + Sbjct: 118 VLR 120 >gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + +E G R+G E L + + D++++D+ + GL Sbjct: 7 HILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDGLT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +P+I +TA + D + G + Y++KP + + IK + Sbjct: 67 LCRELR---VKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRR 122 >gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L + G+ ++ +G EAL + D++++DI + + G Sbjct: 1 MPTILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++ ++P++ +TA ++ + + G + Y++KP +K + Sbjct: 61 WTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 248 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D+ + + + GY L+ +G +A+E + KP ++++DI++ + GL Sbjct: 16 RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGLA 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E L PV+ V++ + D G + Y++KP + + I+ + Sbjct: 76 VLSRLRESGNL--TPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRR 132 >gi|167561993|ref|ZP_02354909.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis EO147] gi|167569245|ref|ZP_02362119.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis C6786] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +Q++ + +IPVI +TA A D + G + Y+ KP + + + + Sbjct: 61 GLTALRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1] gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E P++ +TA D + G + YI KP I+ + + Sbjct: 61 VIQRIR--DEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 243 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D ++L ++ GY NG +AL L + +PD+I++D+ L++++GL+ Sbjct: 5 KILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQLNGLD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+E + +PV+ V+A + D G + Y++KP S + +K ++ Sbjct: 65 VCQQIREITA---VPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRR 120 >gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ L R ++ GY +G +AL+ + PD+I++D+ L ++ Sbjct: 1 MKAHLLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ +P++ +TA D + + G + Y+ KP + + IK + Sbjct: 61 GLEVVQRLR--VAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 58/118 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED++ +L R + GY L A L R+ PD+ ++D L SGL + Sbjct: 11 VLVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAAEALLRETLPDLALIDWMLPGKSGLAL 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +++ D+ + +P+I +TA + D +GG + YI KP S + + + Sbjct: 71 TGRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRR 128 >gi|255035713|ref|YP_003086334.1| histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948469|gb|ACT93169.1| histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1278 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I+EDN+ R+L E + Y L+ NG+ +ELA++ PD+I+ D+ + EISGLE Sbjct: 1028 TILIIEDNDQLRVFIRELFEET-YNILEAGNGLRGVELAQEKIPDIILSDVMMPEISGLE 1086 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++K+ IPV+ +TA G + Y+ KP I I + Sbjct: 1087 VCNRLKKSDTTSHIPVVLLTARTQSEQVIEGLTAGADDYLVKPFDPRILEIKINNLLR 1144 >gi|298530355|ref|ZP_07017757.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfonatronospira thiodismutans ASO3-1] gi|298509729|gb|EFI33633.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfonatronospira thiodismutans ASO3-1] Length = 361 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +MI++D N+KL +++++ GY + G AL+ A + PD+I++DI++ + G Sbjct: 8 KNIMIIDDTPANLKLLQEMLQGRGYRVMAFPQGEMALKAAARKPPDLILLDIRMPGLDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + KE L++IPVI ++A D+ + G Y++KP + +I Sbjct: 68 QVCTRFKEQEGLKDIPVIFISALNDPSDKVQAFAAGGVDYVTKPFHPEEVHARVATHIR 126 >gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016] gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+E L + ++ Y +Q NG +A+ ++I+D+ L I G+E Sbjct: 10 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E S +P+I ++A + D G + YI KP S+ +K + Sbjct: 70 VLRKIRESS---TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRR 125 >gi|222110176|ref|YP_002552440.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax ebreus TPSY] gi|221729620|gb|ACM32440.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax ebreus TPSY] Length = 377 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 V++V+D N+ L L++ Y +G +AL +A+ PD++++DI + I G Sbjct: 20 ATVLVVDDTPDNLTLMAGLLQGH-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDG 78 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K + + IPVI +TA + DE G YI+KPIS SI + + ++ Sbjct: 79 YEVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHL 137 >gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima CS-328] Length = 1206 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 65/116 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN + +++ +G+ A+ +NG + A+ + PDVI+ D+ + ++SGLE Sbjct: 846 TVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLE 905 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + + I+ EL+ P+I +TA A + + G +AY+SKP + + ++ Sbjct: 906 LIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL 961 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 5/117 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 +++V+D N+ L + L+ +G AL++ + + VII D ++ +SG Sbjct: 11 TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118 E + I +I +T + D G Y++KP +++ Sbjct: 70 EFLS-LTATQYPDSIRII-LTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQ 124 >gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII--MDIQLQE 58 M K+++ ED E +L + G+ ++ +G +A+E ++ DV++ +D+ + + Sbjct: 1 MDNKILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNE-DVVLVMLDVMMPK 59 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + ++I+ S +P++ +TA + DE G + YI+KP S +I + +K Sbjct: 60 KDGYDACREIRGKS---NVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKN 116 Query: 119 YIGE 122 + Sbjct: 117 LLRR 120 >gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein sphR gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942] gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 257 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 57/129 (44%), Gaps = 11/129 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---------HKPDVIIMDI 54 ++++VED + + +++ G+ +G AL R PD++++D+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 L ++GL+ + ++ +P++ ++A + D + G + Y++KP + Sbjct: 85 MLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVA 142 Query: 115 TIKKYIGEA 123 + + + Sbjct: 143 RCRALLRRS 151 >gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 244 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED + + G+ +G A++ +PD++++DI L GL Sbjct: 18 RRVLVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIMLPGFDGL 77 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 78 EVCRRIQAQ---RPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRR 134 >gi|289549074|ref|YP_003474062.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289182691|gb|ADC89935.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 61/123 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV +VED+ ++ +E G+ A R+G + R P ++++D+ L + Sbjct: 1 MRPKVFVVEDDIDLLETVVHYLEEEGFQAEGFRDGSSFIRRIRDDVPHLVLLDVMLPDHD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + +K + + +P++ +T M+ D + + G + YI+KP SL + I+ + Sbjct: 61 GFSLARYLKTNPATKSVPIVFITVKGMEDDRLKGFELGADDYITKPFSLRELLARIRAVL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA 21] gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM 11079-80] gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM 11079-80] gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA 21] Length = 263 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 29 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 88 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 89 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 145 >gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G +AL + PD++++D+ L +SG Sbjct: 1 MTHVLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEICKALRTRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08] gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07] gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08] gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++ +DN ++ L+ GY + NG EA+ LA D+II+D+ + +G Sbjct: 7 KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADS-TIDLIILDVVMPVKTGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E + P++ +TA D+ G + Y+SKP S S + +K + Sbjct: 66 VACSEIREKTTA---PILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRR 122 >gi|218245687|ref|YP_002371058.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|257058734|ref|YP_003136622.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] gi|218166165|gb|ACK64902.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|256588900|gb|ACU99786.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802] Length = 593 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ GY +G A+ A+ PD+I++DI++ E+ G + Sbjct: 13 ILIVDDKPTNLRILSTMLTKQGYKVRAVVSGKMAITAAQNQPPDLILLDIKMPELDGYRV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ + + + IPVI ++A GD+ + + G YI+KP + + ++ Sbjct: 73 CELLQAEEKTRHIPVIFLSALQDGGDKMKAFQAGGVDYITKPFQFEEVLARVSTHL 128 >gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 216 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 61/120 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++++D+ + L +D +E GY NG EALE+ PD+II D+ + E+ G Sbjct: 11 RLLLIDDDPNLILLVKDYLEFQGYEVTTAENGREALEILANQVPDMIICDVMMPEMDGYA 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++++D L IPV+ ++A D + G + Y+ KP ++ + +A Sbjct: 71 FVEKVRQDRRLSWIPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELAAQVESSLSQA 130 >gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED E + + + GY ++GM L AR+ PD+II+D L +S Sbjct: 6 MSTQILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLS 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI ++++ + +P+I +TA D G YI KP SL F+ ++ +I Sbjct: 66 GIEICRRLR--TSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHI 123 Query: 121 G 121 Sbjct: 124 R 124 >gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196] gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291] gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196] gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291] Length = 233 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + L ++ G+ + G EALE D+ I+DI L +I Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E P+I +TA D+ G + YI+KP + + +K + Sbjct: 61 GFHICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|299145134|ref|ZP_07038202.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298515625|gb|EFI39506.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1314 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN + E GY + +G+EAL+L R H PD+I+ D+ + ++G Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K IKED + IPVI +TA K K G + Y+SKP + + ME I+ + Sbjct: 1116 YELCKTIKEDIAISHIPVILLTAKDDKQSLISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 >gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1521 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED N + + L+ G+ A +G EA+E+ D I+MDIQ+ + G+E Sbjct: 1402 ILVVEDERTNRAVAQRLLGKLGHEAACAESGEEAIEILATAAFDCILMDIQMPGLDGVET 1461 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+ I+ D+ +IP+IA+TA AM+GD +R G + Y++KP L + +++ + E+ Sbjct: 1462 TRAIR-DTLGLDIPIIALTAHAMEGDRKRFLDAGMQGYVAKPFDLPELQDELERVLLES 1519 >gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+M+V+D+ L R + GY + + + + D+I++D+ L GL Sbjct: 7 KKLMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLMLPGEDGL 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+++ + + P+I +TA D + G + Y+ KP + + I + Sbjct: 67 SICKRLRASKD--QTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRR 124 >gi|160888170|ref|ZP_02069173.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492] gi|270297069|ref|ZP_06203268.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478932|ref|ZP_07938079.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156862305|gb|EDO55736.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492] gi|270273056|gb|EFA18919.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904909|gb|EFV26716.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 375 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 60/113 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + PD++++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVEKENPDLVLLDVMMPDMSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + +K + +IP+I +TA D + + G +ISKP + + + Sbjct: 71 VAQHLKSNPNTADIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRV 123 >gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis] gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 1202 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 65/116 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN + +++ +G+ A+ +NG + A+ + PDVI+ D+ + ++SGLE Sbjct: 846 TVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQTYHPDVIVTDLMMPQVSGLE 905 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + + I+ EL+ P+I +TA A + + G +AY+SKP + + ++ Sbjct: 906 LIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL 961 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 5/117 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 +++V+D N+ L + L+ +G AL++ + + VII D ++ +SG Sbjct: 11 TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKK 118 E + I +I +T + D G Y++KP +++ Sbjct: 70 EFLS-LTATQYPDSIRII-LTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQ 124 >gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1] gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92] gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92] gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I EDN +++ GY + NG++AL L RQ +PD II+DI + E+ + Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDSYK 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + P+I ++A + D + G + YISKP + IK + Sbjct: 62 VCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118 >gi|332530116|ref|ZP_08406066.1| multi-sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] gi|332040589|gb|EGI76965.1| multi-sensor signal transduction histidine kinase [Hylemonella gracilis ATCC 19624] Length = 487 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++++D+ L L+E GY NG + ++ A + PD+I++D+ L + G Sbjct: 10 ARILVIDDSPEIRLLATVLLEREGYEVSSADNGEDGVKRATETAPDLILLDVMLPGMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-- 120 E+ + +K+ L++IPVI ++A + + G Y++KP+S+ + + ++ ++ Sbjct: 70 EVCRWLKQSEALRDIPVIFMSAQDDVPAQTQGFTAGGADYVTKPLSVPVLLARVRTHVAL 129 Query: 121 ---GEA 123 + Sbjct: 130 HAQRRS 135 >gi|319952421|ref|YP_004163688.1| histidine kinase [Cellulophaga algicola DSM 14237] gi|319421081|gb|ADV48190.1| histidine kinase [Cellulophaga algicola DSM 14237] Length = 1388 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN RD + Y L ++G E L++A++ PDVI+ D+ + E+ G Sbjct: 1140 TLLVVEDNAELRNYLRDEFKQQ-YKVLVAKDGQEGLQMAKEFLPDVILTDVIMPEMDGFT 1198 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKED IP++ +TA A D G +AY+ KP + + +K+ I Sbjct: 1199 FCKNIKEDLRTSHIPLLMLTAKAKIDDRIEGIGLGADAYMVKPFDMRLLSLRLKQLI 1255 >gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + ++ +GY +G +AL Q++ D+II DI + + Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ P + +TA + D+ G + +ISKP S + +K + Sbjct: 61 GYDFIGEV--LLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118 Query: 121 GE 122 Sbjct: 119 NR 120 >gi|301161893|emb|CBW21437.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1361 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDN + R L T Y L+ +G E + +A PD+II D+ + G Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E E IP++ +TA A D + G + Y+ KP + + ++ I Sbjct: 1172 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229 >gi|253563785|ref|ZP_04841242.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|251947561|gb|EES87843.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] Length = 1361 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDN + R L T Y L+ +G E + +A PD+II D+ + G Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E E IP++ +TA A D + G + Y+ KP + + ++ I Sbjct: 1172 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229 >gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY ++G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ IP++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAGGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ K + ++ YI +G + +I++D+ L ++ G+ Sbjct: 2 RILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ ++ PV+ +TA D+ G + Y+ KP L I+ + Sbjct: 62 FCQRLRRSGKM--TPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRR 118 >gi|188584893|ref|YP_001916438.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349580|gb|ACB83850.1| response regulator receiver protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 126 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 74/121 (61%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED + + + ++ G+ L NG++ + LA++ KPDVI++DI L +++G Sbjct: 1 MPKILVIEDEKNIVIPLKLYLQKQGFEVLVATNGVDGVSLAQEEKPDVILLDIILPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +KE+ E + IP+I +TA + + + E+ G + Y+ KP + + E IKKY+ Sbjct: 61 YLVCEALKENEETKHIPIIFITAKSNETEIEKALAMGGDDYLIKPFTHTKLYEVIKKYLK 120 Query: 122 E 122 E Sbjct: 121 E 121 >gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L + + GY + N + LE+ + + ++++DI + ++GLE+ Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEVHLVLLDIMMPGMNGLEM 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E++ IP+I ++A + D+ G + Y+ KP + +K + Sbjct: 66 CKKIRENN---NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120 >gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP and Response regulator receiver domains (modular protein) [Bradyrhizobium sp. ORS278] Length = 2117 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V++V+D+ N+ ++E G L G EA++L + + +++MDI + ++ G Sbjct: 1997 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDLVQGNPEIAIVLMDIMMPQMDG 2056 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I++ +P+IA+TA AMKGD E+ + G Y++KP++ + I+ ++ Sbjct: 2057 YQTIGVIRQSPIFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 2116 Query: 122 E 122 Sbjct: 2117 R 2117 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ ++ DL G+ L G EALELA+Q++P I +D+ L ++ G + Sbjct: 1732 LVVEDDPHYARVLIDLARDKGFKVLIASRGAEALELAKQYQPAAISLDVFLPDMLGWTVL 1791 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106 Q+K + + IPV +T + D + G +++SKP Sbjct: 1792 SQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVSKP 1829 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVEDN+ R L+E + G AL+ R D +++D++L ++SG Sbjct: 1851 KRLLIVEDNDAERMSIRQLLEHDDIEIVGADTGAAALDTLRSGPCDCVVLDLRLPDMSGF 1910 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ +Q++ D L +PV+ T + +E+ + + K + S ++ Sbjct: 1911 DVLEQLRTDETLAGVPVVVFTGRELSAEEDAELHTMARSIVVKGVESPERLLD 1963 >gi|60680360|ref|YP_210504.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60491794|emb|CAH06552.1| putative two-component system sensor histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1361 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDN + R L T Y L+ +G E + +A PD+II D+ + G Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E E IP++ +TA A D + G + Y+ KP + + ++ I Sbjct: 1172 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229 >gi|53712177|ref|YP_098169.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|52215042|dbj|BAD47635.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] Length = 1328 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDN + R L T Y L+ +G E + +A PD+II D+ + G Sbjct: 1080 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1138 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E E IP++ +TA A D + G + Y+ KP + + ++ I Sbjct: 1139 ACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1196 >gi|312879123|ref|ZP_07738923.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782414|gb|EFQ22812.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 476 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D ++ L+ Y +G++ALE AR PD++++D+ + + G ++ Sbjct: 9 VLIVDDEPSWREVLEVLLLPEEYSLRFASSGIQALEEARGRCPDLVLLDVMMPGMDGFQV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E E E+PV+ +TA + + G + ++SKP I+ + Sbjct: 69 CRALREQRETGEVPVVMITALEDRQSRIAGVEAGADDFVSKPFDRMELRARIRTIL 124 >gi|284052602|ref|ZP_06382812.1| response regulator receiver modulated serine phosphatase [Arthrospira platensis str. Paraca] Length = 374 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 60/116 (51%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++++D+ + +L + ++ GY + NG E +E A++ +P ++I D + ++G+E+ Sbjct: 1 LVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +Q+K EL +T+ D + G + ++SKPI ++ ++ + Sbjct: 61 RQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLR 116 >gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104] gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104] Length = 222 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED ++ G++ + NG++ L A ++ DV+I+DI L SG E Sbjct: 2 RVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++ PV+ +TA + DE G + Y++KP S + + ++ + Sbjct: 62 VLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118 >gi|91776937|ref|YP_546693.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] gi|91710924|gb|ABE50852.1| multi-sensor hybrid histidine kinase [Methylobacillus flagellatus KT] Length = 1158 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++V+D+ N+ +E G RNG+EA+E + ++++MD+ + E+ G Sbjct: 1032 RHILLVDDDVRNVFALTSALEQKGMKIEVARNGLEAIEKLNRIPDINLVLMDVMMPEMDG 1091 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE T++I+ DS + +P+IA+TA AMK D+E+ K G Y++KPI LS ++ ++ Sbjct: 1092 LEATRRIRADSRFERLPIIAITAKAMKDDQEQCMKAGMNDYLAKPIELSRLYSLLRVWL 1150 Score = 96.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 2 LKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 K+ V+++ED ++ DL GY L E L +A +++P I++DI+L + S Sbjct: 762 SKRLVLVIEDEPAFARILFDLAHEMGYQCLVAHAADEGLLVAEKYQPQAILLDIRLPDES 821 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + + +K++ + IPV V+ + E G Y KP +L + + Sbjct: 822 GLSVLQTLKQNGLTRHIPVHVVS---SEDHSEAALHLGAIGYALKPTTLEELKQVFARL 877 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED+ + LI + G +ALE R + D +I+D++L ++ G Sbjct: 886 KRVLLVEDDARQRESVHQLIADDDVEIIAVEFGEQALEQLRHNIFDCMIIDLKLPDMQGS 945 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ +++ + PVI T + DEE Sbjct: 946 ELLQRMSSEDICAFPPVIVYTGRNLSRDEEE 976 >gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED E ++ + +E GY +G +AL+ ++ + ++II+D+ + EI G Sbjct: 5 QRILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKFKEERFNLIILDVMIPEIDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + I+ E E+P++ +TA D K G + Y+ KP +L + + + Sbjct: 65 QVAETIR--LENTEVPIMFLTAKNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRR 122 >gi|294627008|ref|ZP_06705598.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598670|gb|EFF42817.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1068 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 948 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 1008 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067 Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + +L + + N EAL LA + +P I++DI L + SGL + Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 741 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A + + G Y+ KP + + I++ Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + L+ + + EA++ D ++ D+ L + SG Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLAGSTFDCMVTDLALPDGSGY 861 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 922 SVEASLPSDQQRLLREA 938 >gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1] Length = 1416 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ +DN + L+ Y +G +AL A++ +PD+I+ DI + + G Sbjct: 624 STRILVADDNADMRAYVQRLLGEQ-YEVSCAVDGYDALRAAKRSRPDLILSDIMMPGLDG 682 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + + ++ D EL+++PVI ++A A + + G + Y+ KP S + + + Sbjct: 683 IGLLQTVRGDEELRDVPVILLSARAGEEARVHGLRAGADDYLVKPFSARELVVRVGALL 741 Score = 117 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 53/113 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+DN L+ G+ + +A+ A P V ++DI L +SG E Sbjct: 1301 RVLIVDDNVDAADSLSALLRLQGHTVEVAYSAEDAIRCAEAFCPQVALLDIGLPGMSGYE 1360 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + ++ L + ++AVT + D + G + ++ KP+ S + ++ Sbjct: 1361 LARTLRAKPRLAGMRLVAVTGYGQTNDVHTAHEAGFDEHLVKPVEPSALVRSL 1413 >gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 787 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED+E+ + + Y +G E A+ D+I+ D+ L ++ G+ Sbjct: 2 RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + P++ +TA D R G + Y+ KP++L ++ + Sbjct: 62 LCQRLRSNG--CSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR 118 Score = 129 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ L + ++E G + + E+ + PD++I+D+++ ISG+E+ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ D + QE+P++ +TA +++ G + Y+ KP+ + + I + + Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERS 620 Score = 40.5 bits (95), Expect = 0.074, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 46/117 (39%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++ + + + + G Q A + PD++++++ Sbjct: 376 KLLLIDPDLQLGSQLQQVAYSMGMRWQQITTLEAAKNFLQTTSPDLVVLNVDEIGQREET 435 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + + IPV+A+ D + + G ++ KP++ S ET + + Sbjct: 436 LALMVDLATHTPPIPVLALAVNDRLVDRVTLAQSGARGFLLKPVAASQVWETASQIL 492 >gi|300783817|ref|YP_003764108.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793331|gb|ADJ43706.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D ++ R + GY + +G AL+ + KPDV+++D+ L ++ G Sbjct: 6 ATVLVVDDEPQIVRALRINLTARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDGT 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++ +P+I ++A D+ G + Y++KP + + ++ + Sbjct: 66 EVIAGLR---GWTTVPIIVLSARGDSADKVEALDAGADDYVTKPFGMDELLARLRAAVRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|294646991|ref|ZP_06724608.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806380|ref|ZP_06765223.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292637662|gb|EFF56063.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294446395|gb|EFG15019.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1339 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+E + +++RNG EALE + PD++I DI + E+ GL Sbjct: 1084 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1142 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +TA + D G +AYI KP ++ I +T++ I Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199 >gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae T7901] gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae T7901] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 60/122 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IVED L RD + +G+ NG+E + D+I++D+ L + Sbjct: 1 MSATVLIVEDEAELALLMRDYLLAAGFHCEIIGNGLEVERWLSTNTADIILLDLMLPGKN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I ++++ ++ + +P+I VTA + D + G + Y+ KP S + +K + Sbjct: 61 GLDICRELRTQAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|237715395|ref|ZP_04545876.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405239|ref|ZP_06081789.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229444704|gb|EEO50495.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356114|gb|EEZ05204.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1348 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+E + +++RNG EALE + PD++I DI + E+ GL Sbjct: 1093 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGLT 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +TA + D G +AYI KP ++ I +T++ I Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1208 >gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293] gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293] Length = 233 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 709 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 V++VEDN +N ++ + L+ G +G+EA+EL + D+++MD+Q+ + G Sbjct: 353 TAHVLLVEDNVINQEIGKALLRQVGLEVAVAADGVEAMELLARQPFDLVLMDLQMPGMDG 412 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+ L +P++A+TA+A G E+ G + Y+ KPI + + ++I Sbjct: 413 YEATRMIRRQPSLAGLPIVAMTAYATSGVREQCLAAGMDDYLGKPIEVDQLHRVLTRWI 471 >gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC 19707] Length = 1499 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VEDN +N ++ ++E G NG EAL+ ++++MD + ++ G Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAIANKVYELVLMDCHMPQMDGY 721 Query: 63 EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T++I+ ++ +++P+IA+TA KGD ++ G Y+ KP+ LS+ + ++ ++G Sbjct: 722 EATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWLG 781 Query: 122 EA 123 + Sbjct: 782 TS 783 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 59/117 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D+ R+++E GY + NG +ALE +Q PD+++MD + + G Sbjct: 925 RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQMPDLVLMDAVMPVLDGFN 984 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 QI++ + + PV+ +TA E G YI KP+ S+ + + + + Sbjct: 985 ACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLL 1041 Score = 59.4 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 6/118 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +++IV+++ + + G + +G +AL + R D++++D + + Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G + +I EDS + + +I + G Y++KP+ S I Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVI 635 >gi|27065585|pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk gi|27065589|pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure At Ph 8.0 In The Apo-Form gi|27065629|pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0 In Complex With Mn2+ gi|27065631|pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0 In Complex With Mn2+ gi|27065632|pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5 In Complex With Mg2+ Length = 124 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 85/121 (70%), Positives = 102/121 (84%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KKV+IVEDNELNMKLF DL+E GY LQTR G+ AL +AR++KPD+I+MDIQL EISG Sbjct: 1 TKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+TK +KED +L IPV+AVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK+ + Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K ++++VED+ K+ D + G+ G E LE D++++D+ L E Sbjct: 1 MAKQARLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + + I++ EIP++ ++A + + + G + YI+KP SL I Sbjct: 61 LDGFTLLRTIRK---THEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITS 117 Query: 119 YIGE 122 ++ Sbjct: 118 HLRR 121 >gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0101] Length = 248 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 52/109 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G + A++ PD++I D+ + + G Sbjct: 23 RLLLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEDGWAKAQELLPDLVISDVMMPRLDGYG 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + +++++D L PVI +TA M D + GC+ YI KP Sbjct: 83 LLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDEL 131 >gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2] gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 1238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++V+D+ N+ ++E+ NG EALE+ Q D+++MD+ + E+ G Sbjct: 1118 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALEMLEQTPDFDLVLMDMMMPEMDG 1177 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + +++P+IA+TA AMK D + + G Y+ KPI + ++ ++ Sbjct: 1178 YEAMRRIRLMPQFEKLPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1236 Score = 94.0 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+K++++VED++ K +LI+ G EAL + D +++D+ L +++ Sbjct: 970 MVKRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGKEALNELATQRYDCMVLDLMLSDMT 1029 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 G E+ +I+E+ +L ++P+I T + EE + E+ I K + S ++ Sbjct: 1030 GFELLDRIRENEQLTDLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1084 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ + D+ + G+ AL G + L +A + PD II+DIQL + G I Sbjct: 853 LIIEDDINFANILYDMAHSRGFKALIALKGDDGLNMAHSYLPDAIILDIQLPVMDGWSIL 912 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 ++K +S + IPV ++ + D ++ G AY+ KP S Sbjct: 913 GELKGNSSTRHIPVHVIS---VIDDVKQGLMMGAIAYLKKPSSKESL 956 >gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + R + GY NG +AL A +H I++DI L ++G Sbjct: 1 MVRILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++++ + P++ +TA + DE G + ++ KP S + + ++ I Sbjct: 61 YRVCRRLRDQGD--STPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|317048083|ref|YP_004115731.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316949700|gb|ADU69175.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 246 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L D + SGY A NG E + + D++++DI + GL Sbjct: 6 HILVVDDDRDIRELITDYLMKSGYRATGAANGREMRAVLAANAVDLVVLDIMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ D + + +P++ +TA + D + G + Y+ KP + IK + Sbjct: 66 LCRQLRSDPQ-RNLPILMLTARSEDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123 >gi|253571309|ref|ZP_04848716.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251839262|gb|EES67346.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1333 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VEDN+ D++ +GY NG +AL + ++ PD++I DI + E+SG Sbjct: 1081 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1139 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ IK E+ IPVI +TA + + + G +AYI+KP S+ I TIK + Sbjct: 1140 ELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNIL 1197 >gi|256819847|ref|YP_003141126.1| histidine kinase [Capnocytophaga ochracea DSM 7271] gi|256581430|gb|ACU92565.1| histidine kinase [Capnocytophaga ochracea DSM 7271] Length = 1347 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ + ++ + L R+G E LELA H PD+I+ DI + + G+ Sbjct: 1095 TILVVEDNDDMRDYIQHIL-NEHFHVLLARDGEEGLELAIAHIPDLIVSDIMMPKRDGIS 1153 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K+++ + + IP+I +TA + G E YI+KP S I + I+ + Sbjct: 1154 MVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENIL 1210 >gi|224826735|ref|ZP_03699835.1| response regulator receiver protein [Lutiella nitroferrum 2002] gi|224600955|gb|EEG07138.1| response regulator receiver protein [Lutiella nitroferrum 2002] Length = 122 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I +D + L++ G+ L +G EAL RQH+PD++++D+ + +++ Sbjct: 1 MSKTLLIADDEPNIVISVEYLMKREGFEVLVAGDGEEALAKIRQHRPDIVLLDVMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + ++ D L + ++ +TA + + G + Y++KP S +E +++ + Sbjct: 61 GFDVCQAVRADPALAGVRILMLTAKGRDTEVAKGLALGADVYMTKPFSTRELVEKVRQLV 120 Query: 121 GE 122 G+ Sbjct: 121 GQ 122 >gi|189460890|ref|ZP_03009675.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136] gi|189432464|gb|EDV01449.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136] Length = 1318 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGLE 63 +IV+DN+ + Y NG EA ++ + + PD+++ DI + E+ G E Sbjct: 1071 LIVDDNDDFRLFMEYSLGLQ-YRVKLASNGKEAWDILQNSEEMPDLVVSDIMMPEMDGNE 1129 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IKED IPVI ++A + G + Y++KP +++I + I+K I Sbjct: 1130 LCRLIKEDKRTAHIPVILLSAKQNTESKVEGLTMGADDYVTKPFNMTILVLRIRKLI 1186 >gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E L R +E+ GY ++ + AL+ + +PD++++DI + E+ G+ Sbjct: 2 KILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKIEE-RPDLVLLDIMMPEVDGIS 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+K +PV+ +TA + + G + Y++KP ++ + I+ + Sbjct: 61 LCRQLKTMD--PALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVLLARIRAVLRR 117 >gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D + L + G+ +G +A + + + D+ ++D+ L +I Sbjct: 1 MNERILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+ PVI +TA + D+ G + Y+ KP + + + Sbjct: 61 GFELLRTIRSSHTY---PVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|146305871|ref|YP_001186336.1| response regulator receiver protein [Pseudomonas mendocina ymp] gi|145574072|gb|ABP83604.1| response regulator receiver protein [Pseudomonas mendocina ymp] Length = 395 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63 V++V+D N++L +L+ Y NG +AL +A+ PD+I++DI + E+ G E Sbjct: 13 VLVVDDTPDNLQLISELLIDR-YRVKVASNGAKALRIAQASPAPDLILLDIMMPEMDGYE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q+K D + ++IPVI +TA + E+ G YI+KPIS I + ++ + Sbjct: 72 VCRQLKADPQTRDIPVIFLTAKSEVAAEQMGFDLGAADYITKPISPPILLARVRAQL 128 >gi|78223839|ref|YP_385586.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78195094|gb|ABB32861.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 1216 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++ I L+ NG EALE DV++MDI + E+ G Sbjct: 1095 KKVLIVDDDMRNIFSLSSVLAEKKMIVLEAENGREALERLNGEPGIDVVLMDIMMPEMDG 1154 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++D +P+IA+TA AMKGD + K G YI KP+ + ++ ++ Sbjct: 1155 FAATRAIRKDPRFARLPIIALTAKAMKGDRDECLKAGASDYIQKPVDADKLLSLLRVWL 1213 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I+ED+ + D++ G+ A+ +G + LA + P I++D+ L I G Sbjct: 827 RSILIIEDDLSFAAILMDMVRDRGFPAMVAGDGESGIALADHYLPSAIVLDVMLPHIDGW 886 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS---LSIFMETIKKY 119 + K +K+ + IPV +T D ++ G +++KP++ L TI+ Sbjct: 887 GVMKCLKDSLRTRHIPVHFLTCL---EDRQKALTMGAIGFVTKPVNSAQLDEVFSTIEHS 943 Query: 120 IGEA 123 + ++ Sbjct: 944 LAKS 947 Score = 77.9 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 52/103 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVED+ K L+ T G EA+ L D I++D+ L ++SG Sbjct: 949 RKLLIVEDDRNEAKSMEALLGVRDVAITVTATGSEAMGLLAVEPFDCIVLDLGLSDMSGF 1008 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E+ ++I+ E + IPVI + + ++E+ + E+ I K Sbjct: 1009 EVLEKIQSLDESRRIPVIIHSGRDLSREDEQRLRNYAESIIIK 1051 >gi|29349146|ref|NP_812649.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341054|gb|AAO78843.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1330 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VEDN+ D++ +GY NG +AL + ++ PD++I DI + E+SG Sbjct: 1078 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1136 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ IK E+ IPVI +TA + + + G +AYI+KP S+ I TIK + Sbjct: 1137 ELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNIL 1194 >gi|53725149|ref|YP_102516.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 23344] gi|67639865|ref|ZP_00438695.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse 4] gi|121599948|ref|YP_992333.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1] gi|124384760|ref|YP_001028967.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10229] gi|126449935|ref|YP_001081118.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10247] gi|166999933|ref|ZP_02265762.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20] gi|254177571|ref|ZP_04884226.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 10399] gi|254199424|ref|ZP_04905790.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH] gi|254205739|ref|ZP_04912091.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU] gi|254357895|ref|ZP_04974168.1| DNA-binding response regulator OmpR [Burkholderia mallei 2002721280] gi|52428572|gb|AAU49165.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 23344] gi|121228758|gb|ABM51276.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1] gi|124292780|gb|ABN02049.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10229] gi|126242805|gb|ABO05898.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC 10247] gi|147749020|gb|EDK56094.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH] gi|147753182|gb|EDK60247.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU] gi|148027022|gb|EDK85043.1| DNA-binding response regulator OmpR [Burkholderia mallei 2002721280] gi|160698610|gb|EDP88580.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC 10399] gi|238520472|gb|EEP83932.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse 4] gi|243064054|gb|EES46240.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +Q++ + +IPVI +TA A D + G + Y+ KP + + + + Sbjct: 61 GLTVLRQLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED +L + +E GYI +G E L R + DVII+D+ L ++ G+E Sbjct: 2 KILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ + P++ +TA D+ + G + Y++KP S + I+ + Sbjct: 62 LLLKLREEGV--KTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRR 118 >gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L ++ Y G +AL+ ++H D+ I+D+ L ++ G I Sbjct: 3 ILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVMLPDMDGFTI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I++ P+I +TA D+ G + Y++KP + +K + Sbjct: 63 CKTIRQKHTW---PIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRR 117 >gi|302339669|ref|YP_003804875.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301636854|gb|ADK82281.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 245 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D +N+ F ++ G+ + +G EALE + PD+II+D + ++SG + Sbjct: 6 KILIVDDEPINLDFFDVMLSKLGFEIGRAEDGEEALEQIKSFNPDLIILDNVMPKMSGWQ 65 Query: 64 ITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T+ +K+D + +IP+I +A D+ + G E YI+KP + S + I+ + Sbjct: 66 VTRIVKQDPLFEKYHDIPIIMFSAMDDVKDKIEGFELGVEDYITKPFNFSEVLARIRAVL 125 Query: 121 G 121 Sbjct: 126 R 126 >gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f. nagariensis] Length = 1021 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 V+ V+D+ +N + +L+ GY Q +G EAL+ ++ PDVI++DI + ++SG Sbjct: 539 VLSVDDDPINQMVVENLLSPEGYKVEQAMSGSEALDFLKKTATLPDVILLDIMMPDMSGY 598 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ IP+I V+A + + G Y+ KP + I+ + Sbjct: 599 EVCQEIRRRYSAVSIPIIMVSAKGHPEHVMKGLEAGSVDYVKKPFHRQELLSRIRAQVR 657 >gi|256059315|ref|ZP_05449517.1| Probable transcriptional regulator ycf27 [Brucella neotomae 5K33] gi|261323274|ref|ZP_05962471.1| two-component system response regulator [Brucella neotomae 5K33] gi|261299254|gb|EEY02751.1| two-component system response regulator [Brucella neotomae 5K33] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L + ++ G NG E L++ + D++I+D+ L SG+ Sbjct: 5 AHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPGKSGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ +P+I +TA A D+ + G + YI+KP + I+ + Sbjct: 65 EICQDVR---LTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVLRR 121 >gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 240 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + +E GY +G EALE + +II+D+ L + G Sbjct: 7 HILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYDRFALIILDVMLPGMDGFA 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +PV+ +TA + +G + G + Y++KP SL+ F+ + + + Sbjct: 67 VCERIRTMD--SRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRRS 124 >gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 498 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N++ ++ GY + +G L A P++I++DI + ++ G E Sbjct: 10 KILIVDDQPSNLRFLSKILTDQGYNVKRAISGQLGLNAALGSPPNLILLDIMMPDMDGYE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + +P+I ++ + + + G YI+KP + + I I Sbjct: 70 LCQKLKSMESTRSVPIIFLSGLDDVQYKIKAFQVGGVDYITKPFQVEEVLARIDTQI 126 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 72/126 (57%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQL 56 +++++VED+ N+ ++E G RNG EAL+ ++ D+++MDI + Sbjct: 1035 RRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLMDIMM 1094 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ GL ++I++ + + +P+IA+TA AMK D+E+ G YI+KP+ + + + Sbjct: 1095 PEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1154 Query: 117 KKYIGE 122 + ++ + Sbjct: 1155 RVWMPK 1160 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ + RDL G+ + T + E + A ++P I+MD+ L + SGL + Sbjct: 769 ILVIEDDAAFAMILRDLAREMGFQCVVTHSANEGVAAAEMYRPSAILMDMNLPDFSGLGV 828 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 QIK + + + IPV V+ + + G Y KP+ + I+K Sbjct: 829 LDQIKRNPKTRHIPVHVVS---VADYSHEAMERGAIGYALKPVQREELIGAIRKL 880 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 48/91 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED+ + R L+ + R +AL RQ+ D ++MD+ L ++SG Sbjct: 889 RHVLVVEDDARQLDSIRQLLAGENINLVGVRTAADALARLRQNTFDCMVMDLNLPDLSGY 948 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ +++ E + PVI T ++ +EE+ Sbjct: 949 QLLEKMAEQEHVAFPPVIVYTGRSLSAEEEQ 979 >gi|300726093|ref|ZP_07059550.1| transcriptional regulatory protein ResD [Prevotella bryantii B14] gi|299776563|gb|EFI73116.1| transcriptional regulatory protein ResD [Prevotella bryantii B14] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D E ++ + +E GYI + EAL ++++D+ + +SG Sbjct: 5 SYRILVVDDEEDLCEILKFNLEMEGYIVNTANSAEEALT-LDIASYHLLLLDVMMGGMSG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + KQ+K ++ IP++ +TA + D G + YI+KP S+ + IK + Sbjct: 64 FALAKQLKSNATTASIPIVFLTAKDTENDTVTGFTLGADDYIAKPFSIREVILRIKAVLR 123 Query: 122 E 122 Sbjct: 124 R 124 >gi|210616623|ref|ZP_03291153.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787] gi|210149733|gb|EEA80742.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787] Length = 220 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ + +L+ SGY Q NG++ +E +++K D+I++DI + E G Sbjct: 1 MKTILIIEDDIMIQNALGELLRVSGYQVFQAYNGIDGVEKFKKNKVDLILLDIMMPEKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++E S+ +P+I +TA + E + + YI KP S+ + ++ I+ Sbjct: 61 FDVCREVREMSQ---VPIIILTALDEEDAEVKCFDLKADDYIVKPYSVRVVLKRIEAIFR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|159897113|ref|YP_001543360.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890152|gb|ABX03232.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ +L + +G+ A+ GM L L ++++D+ L ++SG E Sbjct: 6 HILVVEDDPAIGRLLLMHLREAGWQAILANTGMTGLRLWASDCFQIVLLDVMLPDLSGWE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ +S +P++ +TA A D R G + Y++KP S + + +++ I Sbjct: 66 LCQQLRAES---NVPILMLTAKASDDDVVRGLNLGADDYLTKPFSQAQLIARVQRLIQR 121 >gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] Length = 219 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + + ++ Y +G L+ A D+II+D+ L I+G Sbjct: 1 MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+I +QI+++ Q P+I +TA D+ G + YI KP + + I+ + Sbjct: 61 LKICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+ ++ + +G + LE + DV+++D+ L I G Sbjct: 1 MARVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ S ++ ++A D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIRAASSTS---IVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp. subtilis str. 168] gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + + + + ++E GY L + EA+ + + +K D+I++D+ + +SG E Sbjct: 17 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E + P+ +TA + D+ G + YI+KP + I+ ++ Sbjct: 77 ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 132 >gi|218437977|ref|YP_002376306.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218170705|gb|ACK69438.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 353 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ GY + +G +AL + PD+I++D+++ I G E+ Sbjct: 12 ILIVDDIPENLEILFKTLQEQGYEVRRVLSGQQALMVVEADPPDLILLDVKMPHIDGYEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + +IPVI ++A D+ + + G YI+KP L + I+ + Sbjct: 72 CRHLKAQEKTAQIPVIFLSALHEVFDKVKAFRVGGVDYITKPFHLEEVLSRIETQL 127 >gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+E + + YI ++G A EL ++ D+I++DI L +I G+ Sbjct: 2 KILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLPKIDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S+ + P++ +TA D G + Y+ KP +L I+ + Sbjct: 62 LCRRLR--SQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRR 118 >gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 20 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 79 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 135 >gi|29349086|ref|NP_812589.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253571250|ref|ZP_04848657.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29340993|gb|AAO78783.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251839203|gb|EES67287.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1381 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN + L L+ Y +NG E + + + D+I+ D+ + E+ G+E Sbjct: 1128 TILLVEDNGELLHLMTKLLSRE-YNVFTAQNGKEGIAVLEKEDVDLIVSDVMMPEMDGIE 1186 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K E+ IP+I +TA + D + G +A+ISKP +L++ I+ + Sbjct: 1187 FCKYVKGHLEMSHIPMILLTAKNKEEDRAEAYEIGADAFISKPFNLTVLHARIRNLL 1243 >gi|21242035|ref|NP_641617.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107436|gb|AAM36153.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1068 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 948 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 1008 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067 Score = 96.0 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + +L + + N EAL LA + +P I++DI L + S L + Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASSLSV 741 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A + + G Y+ KP + + I++ Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793 Score = 73.6 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + L+ + + EA++ D ++ D+ L + SG Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLASSTFDCMVTDLALPDGSGY 861 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 922 SVEASLPSDQQRLLREA 938 >gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51] gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED E + + GY + +G LELA + D+I++D+ L +++G E+ Sbjct: 9 ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I+ +P+I +TA D+ G YI+KP ++ + I+ + Sbjct: 69 LRRIR---RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALR 122 >gi|317474841|ref|ZP_07934111.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908979|gb|EFV30663.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1179 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN + + +E + +G+E L++ H PDV++ D + + G+E+ Sbjct: 921 VLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHHPDVVVTDQMMPCMDGMEM 979 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ D ++ IPVI +TA + + + G AYI KP S + I++ +GE Sbjct: 980 LKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1037 >gi|315225247|ref|ZP_07867064.1| two component system sensor histidine kinase regulator [Capnocytophaga ochracea F0287] gi|314944930|gb|EFS96962.1| two component system sensor histidine kinase regulator [Capnocytophaga ochracea F0287] Length = 1348 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ + ++ + L R+G E LELA H PD+I+ DI + + G+ Sbjct: 1096 TILVVEDNDDMRDYIQHIL-NEHFHVLLARDGEEGLELAITHIPDLIVSDIMMPKRDGIS 1154 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K+++ + + IP+I +TA + G E YI+KP S I + I+ + Sbjct: 1155 MVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENIL 1211 >gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] Length = 225 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ +G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] Length = 252 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D L + +G+ + +G A LA PD+I++D+ L ++ G Sbjct: 28 ARLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGF 87 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ + IPV+ +TA D+ + G + Y++KP L + I+ + Sbjct: 88 TVTRRLR--NAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 145 >gi|219666561|ref|YP_002456996.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] gi|219536821|gb|ACL18560.1| signal transduction histidine kinase, LytS [Desulfitobacterium hafniense DCB-2] Length = 1022 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D N+++ ++E Y +G +ALE + K +++ D+ + +SG Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEKFHLLLTDLMMPGMSG 751 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E+T+QI+++ L E+P+I TA + + E + G YI+KP + ++ + Sbjct: 752 IELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810 >gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM 7454] gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM 7454] Length = 233 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + L + G+ + N +AL+L D++I+DI L+++ Sbjct: 4 MNDKIIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESENFDLMILDIMLEDMD 63 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E P+I +T+ D+ G + YI+KP + + +K + Sbjct: 64 GFSVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|169828266|ref|YP_001698424.1| ethylene receptor [Lysinibacillus sphaericus C3-41] gi|168992754|gb|ACA40294.1| Ethylene receptor [Lysinibacillus sphaericus C3-41] Length = 1015 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +N+++ ++ Y + +G+EAL + H+ D++I D+ + ++SG E Sbjct: 683 RILVVDDEPINLRVVETILANEPYDIVTVTSGIEALVCIQSHEWDLVISDVMMPKMSGYE 742 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + I++ + ++PV+ +TA + D E G Y++KP+ + I Sbjct: 743 LVRLIRKQFSITDLPVLLLTARSQPQDLENGFLAGANDYVTKPVDALELRSRVAALI 799 >gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G ++ + D++I+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + +++ A G E L+ ++ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D L ++ Y + EAL+ + + D+ I+DI L S Sbjct: 1 MSNKILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGAS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLSICQKIRDKYTY---PIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] Length = 225 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ +G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|306845944|ref|ZP_07478511.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] gi|306273579|gb|EFM55424.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1] Length = 461 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI VT A D+ R + G E ++SKP++ + +K I Sbjct: 61 GFEVCRRLKANPRTANIPVIMVTCLASPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLI 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+++EL R ++ Y + AL A + D II+ L Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278 >gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D++ + L D++E Y + +G EA+ + D+II+DI L +I Sbjct: 1 MNKGKILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+++ ++I++ +I +TA D+ + G + YI+KP +K + Sbjct: 61 DGIDVCRKIRDKFLGT---IIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAH 117 Query: 120 IGE 122 + + Sbjct: 118 LRK 120 >gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 503 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D N++L L+ GY G A+ PD++++D+ + E++G E+ Sbjct: 8 ILVIDDTPENLQLLTRLLTAQGYKVRSVTKGSTGCRAAQSAPPDLVLLDVNMPEMNGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K E Q+IPVI ++A ++ + G YI+KP + + ++ ++ Sbjct: 68 CQQLKARPETQDIPVIFISAHEDVLEKVKAFSMGGVDYITKPFQVEEVLARVEHHL 123 >gi|90419568|ref|ZP_01227478.1| response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336505|gb|EAS50246.1| response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 454 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D E+N+++ + Y + +G ALE+ R D++++D+ + E+ Sbjct: 1 MTARILIVDDLEINLRVLEARLTAEYYDVVTATSGAAALEICRNQSIDLVLLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +K D E+ +P++ +TA D + G + +++KP+ ++ Sbjct: 61 GFEVCRLMKNDPEMMHLPIVLITALDQPSDRVAGLEAGADDFLTKPVRDLPLFSRVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 50.5 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 1/105 (0%) Query: 10 DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIK 69 D+ ++ + ++ T + L A + DVI++D+ L + Q + Sbjct: 161 DSADEVRRLQKHLKGI-ATVEVTDDAAAMLAAATAGQVDVILVDLAASAGDPLRLVSQFR 219 Query: 70 EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 ++ + +PVI + A + + G Y+ +P+ + + Sbjct: 220 SNAATRHLPVIGIAAAGDDVGAAKALELGANDYLQRPLDRNELVA 264 >gi|317476245|ref|ZP_07935496.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907656|gb|EFV29359.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 375 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + PD++++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEHPDLVLLDVMMPDLSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K + + +IP+I +TA D + + G +ISKP + + + Sbjct: 71 VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 123 >gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2] gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2] Length = 312 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 58/117 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I EDN ++ KL + +GY + NG EA ++ ++ +I+ D + E+ GLE+ Sbjct: 7 ILIAEDNAVSRKLMEKTLRQAGYAVVSAANGREAFKIFKERFFPIILTDWGMPEMDGLEL 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I+E+ + + +T + D + G + Y++KP S + +K + Sbjct: 67 CRAIRENPTEGYVFIFLITGRDSRKDIIVGLEAGADDYLTKPFDRSELIARLKTALR 123 >gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + +L + G+ +G AL + DV ++D+ L +I Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +QI++ PV+ +TA D+ G + Y++KP + + +K + Sbjct: 61 GFQLLQQIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ + + +GY A +G++A+E+ +Q KP V+++D+ L +S Sbjct: 1 MATRVLVVDDDPTVSNVVSAYLTKAGYDARVVPDGVKAVEVWQQWKPSVVVLDVMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ + VI ++A + D + G + Y+ KP S + ++ + Sbjct: 61 GLEVLRRLRSADDGAA--VIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098] gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D + + + ++ GY ++ +G EA+++ + +P + I+DI L +SG Sbjct: 6 KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIMLPGMSGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ ++ + +I V+A + D+ + G + YI KP + + ++ + Sbjct: 66 EVCEKIRTEAPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRR 123 >gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY] gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY] Length = 1137 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56 + +++VED+ N+ ++E +G RNG EALE + D+++MDI + Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G +I+ E + +P+IA+TA AMK D+E+ G YI+KP+ + + + Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131 Query: 117 KKYIGE 122 + ++ + Sbjct: 1132 RVWMPK 1137 Score = 100 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED+ ++ DL G+ + G + L A ++ P +++D+ L + SGL Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAALEYGPSAVVLDMNLPDFSGLG 804 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + Q+K + + IPV V+ + + + G Y KP+ + + Sbjct: 805 VLDQLKRNPATRHIPVHVVS---VADYMQEAMERGAIGYALKPVKREELEQAL 854 Score = 93.7 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 51/95 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V++VED+ + L+ T G + +AL+L + D ++MD+ L +++G Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLLKGSTFDCVVMDLHLPDLNG 924 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 E+ +Q+ E E+ PVI T + DEE+ + Sbjct: 925 YELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959 >gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 250 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-------RQHKPDVIIMDIQL 56 ++++VED L ++ ++ GY + +G AL L + + ++I+D+ L Sbjct: 20 RILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++GL++ + I+ + IP++ ++A A + D + G + Y++KP S+ + Sbjct: 80 PQVNGLDLCRLIR--YKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|317478303|ref|ZP_07937467.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316905462|gb|EFV27252.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1342 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN + + YI L NG EAL + ++ ++I+ D+ + + G E Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILDENFVNLIVSDVVMPLMDGFE 1155 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K +K + IP+I +TA + + G +AYI KP S + I I Sbjct: 1156 LCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLI 1212 >gi|290769859|gb|ADD61631.1| putative protein [uncultured organism] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++ A G E L+ ++ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + LEL R+ +PD++++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ ++ GY +G A+ +Q +PD++++D+ L +GL+ Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + I+ S +P++ +TA D + + G + Y++KP + ++ + Sbjct: 77 ICQDIRTQS---TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR 132 >gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D L ++ Y ++ ALE K D+ I+D+ L +I Sbjct: 1 MSYKVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I K+I+E PVI +TA + D G + Y++KP M +K + Sbjct: 61 GFQICKKIREKYTY---PVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|160891619|ref|ZP_02072622.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492] gi|156859026|gb|EDO52457.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492] Length = 1342 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN + + YI L NG EAL + ++ ++I+ D+ + + G E Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILDENFVNLIVSDVVMPLMDGFE 1155 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K +K + IP+I +TA + + G +AYI KP S + I I Sbjct: 1156 LCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLI 1212 >gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED ++ G++ + NG++ L A ++ D++I+DI L SG E Sbjct: 2 KVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++ PV+ +TA + DE G + Y++KP S + + ++ + Sbjct: 62 VLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118 >gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus PHEA-2] Length = 240 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+ K+++ +ED + R +E G+ G +AL+ + D II+DI L + Sbjct: 1 MMSPKQILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGLPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ KQ+++ S+ P++ +TA + D + G + Y +KP S + IK Sbjct: 61 LNGFEVCKQLRQKSQT---PLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKA 117 Query: 119 YIGE 122 Sbjct: 118 IWRR 121 >gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens WH6] Length = 1165 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG EA+E + D+++MD+ + E+ G Sbjct: 1041 RKILLVDDDVRNIFALTSALEHKGAVVAIGRNGREAIERLNEIDDIDLVLMDVMMPEMDG 1100 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T I++D +++P+IAVTA AMK D+ER G Y++KPI L I+ ++ Sbjct: 1101 YEATALIRQDPRWKKLPIIAVTAKAMKDDQERCLAAGSNDYLAKPIDLDRLFSLIRVWLP 1160 Query: 122 E 122 + Sbjct: 1161 K 1161 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED ++ DL GY L E LA ++ PD I++D++L + SGL + Sbjct: 775 ILVVEDEPNFARILFDLAHELGYQCLVAHGADEGYSLAEEYIPDAILLDMRLPDHSGLTV 834 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ D G Y KP + + + Sbjct: 835 LQRLKEHANTRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 886 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED++L LI EAL+L R + D +I+D++L ++ G Sbjct: 895 KRVLLVEDDDLQRDSIARLIGDDDIEITAVGFAQEALDLLRNNVYDCMIIDLKLPDMLGN 954 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 E+ K++ + PVI T + DEE Sbjct: 955 ELLKRMATEDICSFPPVIVYTGRNLTRDEE 984 >gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 245 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 V+D + +E G+ +G E A+Q PDV+I D+ + + G + ++ Sbjct: 24 VDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDGYGLLQK 83 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ D L PVI +TA M D + G + YI KP + ++ Sbjct: 84 LRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNV 135 >gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291] Length = 222 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED ++ G++ + NG++ L A ++ DV+I+DI L SG E Sbjct: 2 KVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++ PV+ +TA + DE G + Y++KP S + + ++ + Sbjct: 62 VLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118 >gi|238028314|ref|YP_002912545.1| putative two-component system, response regulator [Burkholderia glumae BGR1] gi|237877508|gb|ACR29841.1| Putative two-component system, response regulator [Burkholderia glumae BGR1] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IV+D++ L RD + G + + + +PD+I++D+ + + Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++++ + +IPVI +TA A D + G + Y+ KP + + + + Sbjct: 61 GLTALRRLRAAGD--DIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + + G + ++G++AL L + +IIMDI + + G++ Sbjct: 5 KVLIVDDEDEIREAIEIYLRNEGITVFKAKDGIDALMLLEEKDIHLIIMDIMMPRMDGIK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + YI+KP ++ + IK + Sbjct: 65 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRR 120 >gi|163788047|ref|ZP_02182493.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] gi|159876367|gb|EDP70425.1| transcriptional regulator [Flavobacteriales bacterium ALC-1] Length = 350 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+++ED+ + + +L+E S Y + NG ++ A + PD+II DI + E+ G Sbjct: 1 MKKVLLIEDDAILRENTAELLELSDYDVVTAANGKLGVDKAIETMPDIIISDIMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + + + IP I ++A + D + G + YI+KP S + I+ I Sbjct: 61 YGVLEALSSNDNTKHIPFIFLSAKTERQDVRKGMNLGADDYITKPFSEDELISAIESRIA 120 Query: 122 EA 123 +A Sbjct: 121 KA 122 >gi|186685422|ref|YP_001868618.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467874|gb|ACC83675.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 462 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D N++L ++ G+ + NG AL + PDVI++DI + + G Sbjct: 11 KNILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQMVLPDVILLDINMPGMDGY 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ +Q+K D + E+PVI ++A D+ + G YI+KP + + I+ I Sbjct: 71 QVCQQLKADDKTCEVPVIFISALDDVVDKVKAFDVGGVDYIAKPFHGAEVVLRIENQI 128 >gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 584 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 6/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + + ++ G ++G+EA+ + + D+++MD Q+ E+ G E Sbjct: 462 RVLLVEDNAVNQLVAQAFLQRFGLQVSLAKDGLEAVRMTAEQPFDLVLMDCQMPELDGFE 521 Query: 64 ITKQIKEDSELQ------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T+QI+ + + +P+IA+TA +GD ER G +I+KP + Sbjct: 522 ATQQIRAREKARGSTGRAAMPIIALTANVFEGDRERCFSSGMNDFIAKPFKQDELYAVLA 581 Query: 118 KYI 120 +++ Sbjct: 582 RWL 584 >gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116] gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D+ L ++++ G+ + +G L D+I++D+ + +++G Sbjct: 1 MAKILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINSE-IDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|152964302|ref|YP_001360086.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] gi|151358819|gb|ABS01822.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] Length = 806 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 57/117 (48%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+E+ L + +G + +G EAL+ + PDV++ D+ + + G + Sbjct: 20 LVVDDDEMISHLVSAGLRAAGMTVVTASDGREALQRLAEAVPDVVVSDVNMPGMDGFALV 79 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ + + +P++ +T+ A D + G + Y+ KP L+ + + + Sbjct: 80 SRLRAEPATRAVPLVFLTSRAEASDALAALRLGADDYVRKPFDLTELVARVVAKLDR 136 >gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ + G++ +G AL R+ +PD++++D+ L +S Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + I+ +S +P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GIDVARSIRGESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED + + GY +G+ AL AR+ D++I+D L +SG Sbjct: 1 MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGD--EERIRKGGCEAYISKPISLSIFMETIKKY 119 LEI ++++ + ++PVI +TA D G + Y+ KP S+ + ++ + Sbjct: 61 LEICRRLRSTGD--QVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAH 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|89893285|ref|YP_516772.1| hypothetical protein DSY0539 [Desulfitobacterium hafniense Y51] gi|89332733|dbj|BAE82328.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1022 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D N+++ ++E Y +G +ALE + K +++ D+ + +SG Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEKFHLLLTDLMMPGMSG 751 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E+T+QI+++ L E+P+I TA + + E + G YI+KP + ++ + Sbjct: 752 IELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810 >gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 2/125 (1%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58 M K +++IVED + ++ +E +G+ +LQ + EA + H+P +I++D L Sbjct: 1 MSKEQILIVEDEDAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SG++ + +K D+ L EIPVI +TA + + + G + Y++KP S + IK Sbjct: 61 KSGIDFCRMLKSDTLLAEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKA 120 Query: 119 YIGEA 123 + + Sbjct: 121 VLRRS 125 >gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D L + +G+ NG + + + +PD+I++D+ L +++G Sbjct: 5 RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDMNGFS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK+++ P++ +TA D+ G + Y++KP SL + I+ + Sbjct: 65 VTKRLRGAGYTA--PILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRR 121 >gi|294643180|ref|ZP_06721009.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|292641478|gb|EFF59667.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] Length = 1307 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + + Y L NG+EAL++ Q D+II DI + + G+E+ Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K++ + IPVI +TA + G +AYI KP S+ + + Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1176 >gi|293369022|ref|ZP_06615621.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635894|gb|EFF54387.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1307 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + + Y L NG+EAL++ Q D+II DI + + G+E+ Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K++ + IPVI +TA + G +AYI KP S+ + + Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1176 >gi|253581956|ref|ZP_04859180.1| transcription regulator [Fusobacterium varium ATCC 27725] gi|251836305|gb|EES64842.1| transcription regulator [Fusobacterium varium ATCC 27725] Length = 239 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 70/122 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D ++L + +E GY T G + L + KPD+I++D+ L E++ Sbjct: 1 MGKKILIVDDEIHILELLKLNLEIYGYEVFTTDTGKGVMSLIEKIKPDIILLDLMLPEVN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+I+ +S L EI ++ ++A + + D+ + G + YI+KP SL + I + Sbjct: 61 GIDICKRIRNNSSLNEIRILIISAKSEEIDKIVCLEIGADDYITKPFSLREIIARINAFS 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|237721722|ref|ZP_04552203.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448591|gb|EEO54382.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1329 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + + Y L NG+EAL++ Q D+II DI + + G+E+ Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K++ + IPVI +TA + G +AYI KP S+ + + Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1198 >gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] Length = 1342 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 1006 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1065 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1066 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1120 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 863 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 922 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 923 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 976 >gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E P++ +TA D + G + YI KP I+ + + Sbjct: 67 VIQRIR--DEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|256823584|ref|YP_003147547.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797123|gb|ACV27779.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED++ + +E GYI +G+ L LA+ ++ D +I+D+ L + Sbjct: 1 MAYSILLVEDHKELAATTGEYLEACGYIVDYAMDGISGLNLAKNNQYDALILDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+++++ +IP++ +TA D+ G + Y+ KP + I Sbjct: 61 GFTICQRIRQEAQ-SDIPILMLTARDQLSDKLDGFDAGADDYLIKPFDFEELDARLNAII 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|260642135|ref|ZP_05414654.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623317|gb|EEX46188.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1329 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + + Y L NG+EAL++ Q D+II DI + + G+E+ Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K++ + IPVI +TA + G +AYI KP S+ + + Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1198 >gi|170077988|ref|YP_001734626.1| two-component system response regulator [Synechococcus sp. PCC 7002] gi|169885657|gb|ACA99370.1| two-component system response regulator [Synechococcus sp. PCC 7002] Length = 131 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 71/127 (55%), Gaps = 7/127 (5%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-------PDVIIMDI 54 + ++++VED+ ++ +L++ +G +G+EALE Q P++I++DI Sbjct: 1 MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDI 60 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + ++G E+ +++K D ++Q IP++ ++ + D K G +AYI+KP + + Sbjct: 61 VMPRMNGYELCRRLKSDPKIQNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIG 120 Query: 115 TIKKYIG 121 TIK+ + Sbjct: 121 TIKQLLR 127 >gi|153871117|ref|ZP_02000368.1| two-component response regulator [Beggiatoa sp. PS] gi|152072416|gb|EDN69631.1| two-component response regulator [Beggiatoa sp. PS] Length = 295 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 66/116 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IV+DN K+ R + +GY L+ NG ALE +++ P+V+++D+ + +++G Sbjct: 1 MSKVLIVDDNLKTRKMLRRHLLKNGYETLEAENGHVALESVKENLPEVVLLDVMMPDMTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +E+ +++++ + + +I +TA + G + YI+KP + M I+ Sbjct: 61 IEVCQKLRQTPHYELVYIIMLTALTSSEQKVEGLDQGADDYITKPFDVYELMAHIR 116 >gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + L + GY + G EAL++ + + +I++DI + + G Sbjct: 1 MNNILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E IP++ ++A + D+ + G + Y+ KP + + +K + Sbjct: 61 LEVCRRVREK---YNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|120556581|ref|YP_960932.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinobacter aquaeolei VT8] gi|120326430|gb|ABM20745.1| response regulator receiver modulated metal dependent phosphohydrolase [Marinobacter aquaeolei VT8] Length = 328 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++V+D N+++ R+++ Y L ++G ALELAR KPD++++D+ + +SG Sbjct: 5 TKTLLLVDDEPANLQVLRNILSDQ-YRLLFAKDGERALELARSEKPDLVLLDVMMPGMSG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +K + + IPVI VTA + DE R + G Y++KP++ +I +K ++ Sbjct: 64 YEVCNALKAGQDTRAIPVIFVTALSDADDEARGFELGAVDYLTKPVNAAIVRARVKNHL 122 >gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] Length = 1331 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|320160764|ref|YP_004173988.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994617|dbj|BAJ63388.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 253 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED + L + ++ +GY L NG EA++ PD+I++D+ + E+ G Sbjct: 27 QTILVVEDEPDTVFLLKQILRMAGYNVLSAVNGYEAIQKCMDIHPDLILLDLMMPEMDGW 86 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E ++PVI ++A K D R + G + YI+KP + + ++ + Sbjct: 87 QTYQYLRE---ATDVPVIVISAIHNKEDVVRALRIGMDDYITKPFVNAEVVARVQAVLRR 143 Query: 123 A 123 A Sbjct: 144 A 144 >gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + + ++ GY + NG +AL+ A D I++D+ L +++G Sbjct: 1 MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +++++ + P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 LEIARRVRQS---KTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317131537|ref|YP_004090851.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469516|gb|ADU26120.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 247 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M VMIVEDN + ++ GYI L ++G EAL L Q ++++D+ + I Sbjct: 20 MQYTVMIVEDNAEIRGIVTKYLDAEGYIPLFAKDGFEALALFAQRLVHLVLLDVMMPGID 79 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ + ++PVI +TA + D G + Y+ KP SL M+ + I Sbjct: 80 GFEVLRELRK---ISDVPVILLTARQEETDRLNGFDCGADDYVVKPFSLKELMKRVNALI 136 Query: 121 GE 122 Sbjct: 137 RR 138 >gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] Length = 1331 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + R ++ GY +G AL++AR+ PDV+I+D+ L +I G+ + Sbjct: 4 VLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGLPDIDGVTV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++E PVI ++A D+ G + Y++KP + F+ ++ + Sbjct: 64 LSKLRE---FCASPVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRR 118 >gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + GY ++G E D++++D+ L GL Sbjct: 6 HLLIVDDDREIRDLLTRYLARHGYRVTAAKDGQEMRRYLADRNIDLVVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ D PV+ ++A D + G + Y+ KP + + IK + Sbjct: 66 LCRAIRADGG---PPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRR 121 >gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + ++ Y L+ G EAL+ K D+ I+DI L ++ G +I Sbjct: 34 ILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDVDGFQI 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQI+E PVI +TA D+ G + YI KP + + +K I Sbjct: 94 LKQIREKYTF---PVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRR 148 >gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 257 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + + G+ NG +AL AR+ KPD +++DI L ++ GL+ Sbjct: 32 RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQ 91 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ D+E +IPV+ +TA D G + Y++KP SL + ++ I + Sbjct: 92 VLSRLRADAE--DIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 149 >gi|119493892|ref|ZP_01624456.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC 8106] gi|119452369|gb|EAW33561.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC 8106] Length = 117 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 68/116 (58%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+VED+ ++ +L++ SG +G+EALE ++H PD++++DI + ++G E+ Sbjct: 1 MVVEDSVTQREMISNLLKDSGLHVTVASDGVEALEQVQKHCPDLVVLDIVMPRMNGYELC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++K D + Q I V+ ++ + D K G +AYI+KP + + T+K+ + Sbjct: 61 RRLKSDPKTQSIAVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 116 >gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D + + + ++E Y + NG + +E+ ++ PD+II+D+ L + SG Sbjct: 1 MAKILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPDESG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I K+I L ++P+I +TA D+ + G + Y++KP + +K + Sbjct: 61 FDILKKI---VPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE ++ PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRR 117 >gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1138 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+I +D+ N+ E NG EAL+L ++ D+++MDI + E+ G Sbjct: 1019 KKVLIADDDMRNVFALSTAFEAYNMQIEIANNGREALQLLDKYPDFDLVLMDIMMPEMDG 1078 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+E+ + ++P+IAVTA AMKGD ER + G YISKPI L + ++ ++ Sbjct: 1079 FEAIEKIRENKKFAQLPIIAVTAKAMKGDRERTIQIGANDYISKPIDLDKLISLMRVWL 1137 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++I+ED+ ++ +D G+ NG E LE A Q +PD II+DI L + G Sbjct: 748 KRLLIIEDDVNFSEILKDYAVEHGFDPSVAYNGKEGLETAIQTQPDAIILDIMLPIMDGW 807 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 E+ K++K D + ++IPV ++A ++ DE G ++ KP++ +TIK Sbjct: 808 EVLKKLKNDDKTKDIPVHMMSAASLHKDEP--INKGAIGFLRKPVTEDSLENAFKTIKSL 865 Query: 120 I 120 I Sbjct: 866 I 866 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 K+V+I+ED+ L + + + Q N EA+E LA + D II+DI L + SG Sbjct: 871 KRVLIIEDHTLQSDFIKSSLNERNTVVDQAFNADEAMEILAAKKSYDCIILDINLPDKSG 930 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96 LE+ IK Q P+I TA + ERI + Sbjct: 931 LELLDDIKAIDTYQHTPIIINTAMELSQESTERILR 966 >gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall processes YvrG [Bacillus subtilis subsp. subtilis str. 168] gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall processes [YvrG] [Bacillus subtilis subsp. subtilis str. 168] gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] Length = 237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + + + + ++E GY L + EA+ + + +K D+I++D+ + +SG E Sbjct: 6 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E + P+ +TA + D+ G + YI+KP + I+ ++ Sbjct: 66 ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 121 >gi|73670561|ref|YP_306576.1| response regulator receiver [Methanosarcina barkeri str. Fusaro] gi|72397723|gb|AAZ71996.1| response regulator receiver [Methanosarcina barkeri str. Fusaro] Length = 285 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D N++L + Y + +G EA++ ++ K D+I++D+ + E+ G E Sbjct: 9 KVLIVDDVLENIELIEAYLSVEPYNLITASSGKEAIQKLKEEKLDMILLDVMMPEVGGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K + E Q IPV+ +TA + D + G + +++KPI+ +K + Sbjct: 69 VCRIVKNNPETQFIPVLMLTALSEIEDRITGIEAGADDFLTKPINRLELKTRVKSLLR 126 >gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 233 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149] gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN+ + +L++ GY ++ +GMEAL + D+I++D+ + ++GL Sbjct: 5 TILVVDDNQEIVYSISELLKYEGYQVVKAYDGMEALNALEINNIDLILLDVMMPRLNGLS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++E+ IPVI ++A + D+ G + Y+ KP + + + IK ++ Sbjct: 65 ALMKLRENYR---IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLRR 120 >gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ + ++ E +G+ +G+ LE+AR+ PD+II+D+ L + G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ +P++ +TA + + G Y+ KP S+ + ++ + Sbjct: 61 FSVC---RAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR 117 >gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217] gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 240 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQNN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|70732320|ref|YP_262076.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68346619|gb|AAY94225.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ + L + GY + +G + PD+II+D+ L +G Sbjct: 1 MSRLLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALEREVPDLIILDLMLPGDNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + +++++ PVI +TA D + G + Y+SKP + ++ + Sbjct: 61 LTLCQRLRQQHAT---PVIMLTAMGELSDRVVGLEMGADDYLSKPFDARELLARVRAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 1014 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN R ++ +S + +G ALE AR PD+I+ D+ + + G Sbjct: 652 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARACVPDLILTDVMMPRLDGFG 710 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + ++++ D + +PV+ ++A A + + G + Y+ KP S + + Sbjct: 711 LLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARV 763 >gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++VED + K + +E GY + G + + +AR+ P+++++D+ L I Sbjct: 1 MSTKILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + ++ E E+ ++ +TA D+ + G + Y++KP + + IK Sbjct: 61 GFEVCRILR--GEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLE 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella ruminicola 23] Length = 1314 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D+E + + + Y + +G+EAL L +QH+ +II D + + G E Sbjct: 1066 LIVDDSEDMRQFLENNFKDK-YHIITAGDGIEALHLLQQHQVSIIISDWMMPRMDGAEFC 1124 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++++ IP + +TA + + G +AYI KP S+ I+ + Sbjct: 1125 RRVRQNPLTSHIPFVMLTAKTDDNSKVKGMDVGADAYIEKPFSVQYLEACIRNIL 1179 >gi|293372359|ref|ZP_06618743.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|292632542|gb|EFF51136.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] Length = 1372 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDNE K + S + L NG E + A PD+++ DI + + G+ + Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGIILC 1172 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+KED IPVI +TA D+E + G ++Y++KP S S+ I + Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLL 1227 >gi|262408473|ref|ZP_06085019.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294810661|ref|ZP_06769310.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|262353338|gb|EEZ02432.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294442130|gb|EFG10948.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1322 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + + Y L NG+EAL++ Q D+II DI + + G+E+ Sbjct: 1077 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1135 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K++ + IPVI +TA + G +AYI KP S+ + + Sbjct: 1136 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1191 >gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 222 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +IV+D E ++ ++ + +G + + +G EA+E+ + + DV+++DI + + G Sbjct: 1 MVRFLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIMMPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK+ ++++P+I ++A + D+ + G + Y++KP S M IK Sbjct: 61 FTACREIKK---IKDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSE 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 241 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY + E +++PD++++D+ + GL Sbjct: 5 KILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVMMPGEDGLA 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ E+ +PVI +TA D + G + Y+ KP + + I+ + Sbjct: 65 VVRRLRAQGEM--VPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRR 121 >gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 958 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++VEDN+ N L + ++E G+ NG EALE ++ +IIMD+Q+ + G Sbjct: 696 SKEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKIKEKTYSLIIMDMQMPVMDG 755 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+E ++PVIA+TA ++GDE + + GC+ Y+ KP+ ++ I ++ Sbjct: 756 YTATRKIREKGL--KVPVIALTAHTLRGDEAKSLEAGCDGYLGKPVKQKELIDAIVYFLR 813 >gi|254414545|ref|ZP_05028311.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178775|gb|EDX73773.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 413 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N++L + +GY + AL + P +I++DI + ++ G E+ Sbjct: 10 VLIVDDQPNNLRLLSTTLTEAGYRVRNAISAKMALMGIEKALPQLILLDIMMPQMDGYEL 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D Q IP+I ++A + D+ + + G YI+KP + + + + Sbjct: 70 CQHLKSDERTQHIPIIFLSALDNEWDKVKAFEVGGTDYITKPFQVKEVLSRVNNQL 125 >gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1141 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 74/126 (58%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56 +++++VED+ N+ +++E G + RNG EAL+ + + D+++MDI + Sbjct: 1016 RRILVVEDDIRNIYALTNILEPRGAEVIIARNGREALDALSKSQASESTAIDIVLMDIMM 1075 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GL T++I+E+ +++P+I +TA AM D++R + G Y++KP+ + + + Sbjct: 1076 PVMDGLAATRKIRENPAWKKLPIITLTAKAMPDDQQRCIEAGANDYMAKPLDVDKLLSLV 1135 Query: 117 KKYIGE 122 + ++ + Sbjct: 1136 RVWMPK 1141 Score = 102 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 3 KKVMIV-EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V++V ED+E ++ RDL G+ + R EA++ AR+ P+ I++D+ L + SG Sbjct: 747 KRVLLVIEDDETFAEIVRDLSREMGFHCVVARTAEEAVKTAREFSPNAIVLDVGLPDQSG 806 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 L + +K D + IPV ++A G Y+ KP+S ++ + + Sbjct: 807 LSVLDGLKNDVRTRHIPVHVISAGDHT---RTAISLGAVGYLRKPVSREQIVDVLARL 861 Score = 74.4 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 46/93 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED++ + + +L+ + + E L L R+ D +++D+ L + SG Sbjct: 871 RVLIVEDDKNHREAVANLLGSGDVETFTAASAAECLNLLREQTFDCMVLDLSLPDTSGFA 930 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 + + + +++ PVI T + + E+ + Sbjct: 931 LLETLSQENIYSFPPVIVYTGRELSAENEQKLR 963 >gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] Length = 248 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + IV+D++ ++ ++E G+ + +G+ A+E+ KPD+I++D+ L + G Sbjct: 9 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 68 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E+ ++I+ +P+I +TA + D + G + Y+ KP ++ + I+ Sbjct: 69 TEVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 122 >gi|241888541|ref|ZP_04775849.1| response regulator SaeR [Gemella haemolysans ATCC 10379] gi|241864808|gb|EER69182.1| response regulator SaeR [Gemella haemolysans ATCC 10379] Length = 229 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K+++V+D ++ + +E GY +G EALE +++K +II DI + + Sbjct: 1 MMNKILLVDDEIEITEINKRYLEQGGYDIDIANDGKEALEKYKRNKYSLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +++ Q P + +TA + D+ G + YI KP S + ++ + Sbjct: 61 GYDLISEVQYLDTEQ--PFLFITAKTTEPDKIYALSMGADDYIVKPFSPRELVLRVRNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 236 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E + ++ GY+ + +G EAL L + D+II+D+ L + G E Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S ++P++ +TA D + + G + Y++KP L + ++ + Sbjct: 68 VAREVRAVS--PQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKR 124 >gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ + ++ +D +E +GY +G L+ A Q + D++I+D+ L + G Sbjct: 1 MKHILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPIVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQ+++ ++ IP++ V+A D+ R G + +ISKP SL + +K ++ Sbjct: 61 FEICKQVRK---VKNIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|298528354|ref|ZP_07015758.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] gi|298512006|gb|EFI35908.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfonatronospira thiodismutans ASO3-1] Length = 1029 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-ARQHKPDVIIMDIQLQEISGLE 63 V+IV+D ++++ L+ Y L G ALE+ +PD+I++DI + ++ G E Sbjct: 13 VLIVDDQPASIEVLGSLL-REDYHVLVAAGGTRALEMVFGNTRPDLILLDIMMPDMDGYE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K D + PVI +TA DEE G YI+KP SI ++ I Sbjct: 72 VCRRLKADERTRGTPVIFLTAMDQDEDEELGFSLGAADYITKPFKPSIVRARVRTQI 128 >gi|224539619|ref|ZP_03680158.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus DSM 14838] gi|224518770|gb|EEF87875.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus DSM 14838] Length = 375 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 61/113 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + PD++++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKENPDLVLLDVMMPDMSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + +K + + +IP+I +TA D + + G +ISKP + + + Sbjct: 71 VAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRV 123 >gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 743 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 KKV+IV+D+ N ++E + NG +ALEL +H +++MD+ + ++ G Sbjct: 623 KKVLIVDDDVRNTYALATVLEDREMEVVVGNNGNQALELLEKHSDIAIVLMDVMMPKMDG 682 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E QI+ + +P+IA+TA AMKGD+ + + G Y+SKP+ + ++ ++ Sbjct: 683 YEAIHQIRAQPRYRHLPIIALTAKAMKGDKAKCIEAGANDYLSKPVDTEKLISLMRVWL 741 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 6/121 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+ED+ L +L + L G L+LA Q+ P II+D++L +I G Sbjct: 355 KSLLIIEDDRQFSNLLMELAREKDFKCLLAEKGETGLQLAEQYHPQAIILDVKLPDIDGW 414 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 + +++ + + Q IPV ++A+ G Y+ KPIS+ + I++ Sbjct: 415 TVIDKLQNNQQTQHIPVHVMSAYDPN---INALDKGAIGYLHKPISMPELGEAFKKIEQL 471 Query: 120 I 120 I Sbjct: 472 I 472 Score = 48.6 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 51/103 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++++ DNE + + L+E E L+ Q + D II+D+ +++ SG+ Sbjct: 477 KNLLVIADNEKHQQKILGLLEDDEVQTTFFVTIAEVLQQLHQTQFDCIILDMDIEQGSGV 536 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ Q+++ + L + PVI + +EE + + E + K Sbjct: 537 KLLGQMQKTNTLCQTPVIIYVERDLTAEEEALLQRCAENLMVK 579 >gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V +VED+ +L R +E +G+ G + + + P++ ++DI + Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI +QI+ + PVI +TA + D+ G + YI+KP S + IK + Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 245 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ R+ +E G + +G L+ A + DV+++D+ L GLE+ Sbjct: 21 LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLMLPGKDGLEVC 80 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ S ++PVI +TA + D + G + Y++KP S + I+ + A Sbjct: 81 RELRSRS---DVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRA 135 >gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1164 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + + RNG EA+ + D+++MD+ + E+ G Sbjct: 1040 RKILLVDDDVRNIFALTSALEHKGAVVVIGRNGHEAIARLNEVEDIDLVLMDVMMPEMDG 1099 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T QI++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 1100 FEATVQIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 1159 Query: 122 E 122 + Sbjct: 1160 K 1160 Score = 99.4 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + DL GY L E LA Q PD I++D++L + SGL + Sbjct: 774 ILVVEDEANFAHILFDLAHELGYHCLVAHGADEGYSLAAQFIPDAILLDMRLPDHSGLTV 833 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE+++ + IPV ++ D G Y KP + + + Sbjct: 834 LQRLKENAQTRHIPVHVIS----VEDRVEAAMHMGAVGYAVKPTTREELKDVFARL 885 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 46/91 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED++L LI EAL+L R++ D +++D++L ++ G Sbjct: 894 KRVLLVEDDDLQRDSIARLIGDDDIEITAVGLAQEALDLLRENVYDCMVIDLKLPDMLGN 953 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ K++ + PVI T + DEE Sbjct: 954 DLLKRMSTEDICSFPPVIVYTGRNLTRDEEA 984 >gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326] gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + NG E L L D+I++D+ + +++G Sbjct: 1 MPHILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLTDG-IDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ + PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWQT---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|319793620|ref|YP_004155260.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] gi|315596083|gb|ADU37149.1| multi-sensor hybrid histidine kinase [Variovorax paradoxus EPS] Length = 1167 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 + +++V+D+ N+ +E G RNG EALE Q + D+++MD+ + E+ G Sbjct: 1043 RTILLVDDDVRNIFALTSALEQRGAAVEIGRNGREALEKLDQVREIDLVLMDVMMPEMDG 1102 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE T++++ D +++PVIA+TA AMK D ++ G Y++KP+ L ++ ++ Sbjct: 1103 LEATRRLRADPRFEKMPVIAITAKAMKDDRDQCLAAGANDYLAKPVDLERLFSLLRVWMP 1162 Query: 122 E 122 + Sbjct: 1163 K 1163 Score = 89.8 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+++ED + DL GY L + ELA Q PD I++D++L + +GL Sbjct: 774 RRVLVIEDEPQFAHILYDLAHELGYRCLVAHGAADGFELATQFVPDAILLDMRLPDSTGL 833 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 ++ +++K+ + IP+ V+ A + G + KP + M+ Sbjct: 834 DVLQKLKDSPHTRHIPIHVVS--AADNAQAAALHMGAIGFALKPATRDELMKV 884 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 45/89 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+EL + LI + +G EALEL R D ++ D++L ++ G ++ Sbjct: 899 VLLVEDDELQREAVIKLIGDDDIEIVAVGSGEEALELLRTRVFDCMVTDLRLPDMQGSDL 958 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER 93 K + + + PVI T + DEE Sbjct: 959 LKAMAAEEIVSFPPVIVYTGRNLTRDEEA 987 >gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1062 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 71/118 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN LN ++ + +G +G EA+E Q + ++MD Q+ + G Sbjct: 790 ARILLVEDNRLNQEVALHFLRRAGLKVDVAAHGAEAIERLEQGAYEAVLMDCQMPVMDGY 849 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ ++ ++P+IA+TA A++GD ER K G ++SKPI ++ +T+ ++I Sbjct: 850 EATRRIRSKAQFAQLPIIAMTANALEGDRERSLKSGMNDHLSKPIDVNHLYQTLGRWI 907 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEI 59 +V++V+DN + + + G++A +G +ALE + ++++D + + Sbjct: 641 RVLVVDDNASARHILSAMFASFGFVAHAVADGRQALEELARGMDGQPYHLMLIDYHMPGL 700 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G+E ++++ + E +P VI + ++ ++ G +AY++KP++ S ++ +++ Sbjct: 701 DGIETSRRLLQRKESVPLPTVIMASMDERPIVVQQAQEAGIQAYVNKPVTASTLLDAVQR 760 Query: 119 YIG 121 +G Sbjct: 761 ALG 763 >gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] Length = 1342 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 1006 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1065 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1066 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1120 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 863 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 922 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 923 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 976 >gi|224537550|ref|ZP_03678089.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM 14838] gi|224520863|gb|EEF89968.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM 14838] Length = 1345 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED++ +L+ Y L+ +G E +A PD+II DI + ++ GLE Sbjct: 1095 TILLVEDDKEFRHYMFELLSKK-YNVLEAGDGEEGERIATTKFPDLIISDIMMPKVDGLE 1153 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+IK + ++ IPVI +TA + + + G + YISKP +L I + I+K I E Sbjct: 1154 LCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1212 >gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum B str. Eklund 17B] gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED++ L +ET Y NG A+ A + PD++I+D+ L ++ Sbjct: 1 MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+EI K+I+ +P+I V+A + D+ G + Y++KP S+ + ++ Sbjct: 61 DGIEIIKRIR---TWSNVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVS 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895] gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895] Length = 290 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 57 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 116 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 117 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 173 >gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908] gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 241 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQNG--SPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|146300865|ref|YP_001195456.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146155283|gb|ABQ06137.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1344 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN K D + Y + NG E L++ RQ KP + + D+ + + GLE Sbjct: 1099 KILVIEDNNELRKYLVDYLSDY-YKVYEAENGSEGLKICRQIKPILCVTDVMMPVMDGLE 1157 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + IPV+ +TA + D+ + G + Y+ KP + I+ I Sbjct: 1158 FCRELKNDEFISHIPVVMLTALSENMDKVKGYDTGADGYLVKPFEPLLLKTVIENMI 1214 >gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241] gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241] Length = 232 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ ++ + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+I+ED + + + Y +G+ L A QH D+I++D+ L E+ G Sbjct: 1 MKKVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+++ ++ P+I +TA D+ G + YI KP + + + I Sbjct: 61 LEVCKRLRTQ---KDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|315646640|ref|ZP_07899757.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277966|gb|EFU41287.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 + KV+I+ED E ++ +G+ L+T +G EAL + + D+ ++D+ + I Sbjct: 1 MSKVLILEDEESIRSFIVINLKRNGFDVLETGDGNEALRMLQTTPDIDIALLDVMVPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+E +E I +I +TA + D+ G + ++SKP S + + ++ + Sbjct: 61 GFEVCRRIRETNE--RIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] Length = 241 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G E + + D+II+DI + ++ Sbjct: 12 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 71 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 72 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 128 Query: 121 GEA 123 + Sbjct: 129 RRS 131 >gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198] gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198] Length = 235 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L D +++SGY +G E +Q D+I++D+ L G+ + Sbjct: 10 ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLMLPVKDGITV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++ +IP+I VTA + D + G + YI KP S + +K + Sbjct: 70 CKELRQ---FSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRR 124 >gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr [Photorhabdus asymbiotica] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L ++L+E G + +G +AL+L + D++++DI + +G Sbjct: 1 MHKILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLLDE-SIDLLLLDIMMPRKNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++ + PVI +TA D + G + Y++KP + + I+ + Sbjct: 60 IATLKELR---LHHQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILR 116 Query: 122 EA 123 + Sbjct: 117 RS 118 >gi|159184699|ref|NP_354304.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325292658|ref|YP_004278522.1| two component response regulator [Agrobacterium sp. H13-3] gi|159139988|gb|AAK87089.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325060511|gb|ADY64202.1| two component response regulator [Agrobacterium sp. H13-3] Length = 123 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 94/123 (76%), Positives = 110/123 (89%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+VMIVEDNELNMKLFRDLIE SGY +QTRNGMEAL+LAR+H+PD+I+MDIQL E+S Sbjct: 1 MPKQVMIVEDNELNMKLFRDLIEASGYTTIQTRNGMEALDLARKHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +KED EL IPVIAVTAFAMKGDEERIR+GGCEAY+SKPIS+ F+E IK Y+ Sbjct: 61 GLEVTKWLKEDDELHVIPVIAVTAFAMKGDEERIRQGGCEAYVSKPISVPKFIEIIKTYL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 252 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + + R + +G+ R G E L R +P +++DI L ++ GL++ Sbjct: 18 VVVVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTDRPTAVVLDIGLPDMDGLDL 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E + PV+ VTA D + G + Y+ KP + + ++ + Sbjct: 78 CRRLREAGDW--TPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRR 133 >gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074] gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074] gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D ++ + Y +G AL LA + PDVI++D+ L ++ G Sbjct: 1 MTRVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ + ++ +PV+ ++A ++ + G + Y++KP + + ++ + Sbjct: 61 VDVLRGLRS---WSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218441976|ref|YP_002380305.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218174704|gb|ACK73437.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 465 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D N+++ +++ +GY + N + AL+ + PD+I++DI++ E+ G ++ Sbjct: 13 ILIIDDQAANLRILSEILTQNGYKVRKAINPLSALKAIQSTPPDLILLDIKMPEMDGYQL 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QIK D EL EIPVI ++A ++ R + G YI+KP + IK + Sbjct: 73 CEQIKSDPELSEIPVIFISALDEVFNKVRAFEVGGVDYITKPFQDGEVIARIKNQL 128 >gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter bemidjiensis Bem] gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache, HAMP, PAS, PAC, PAS and HPT domain-containing protein [Geobacter bemidjiensis Bem] Length = 1229 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISG 61 +V++VEDN +N ++ R ++E G RNG EAL L Q ++MD+ + + G Sbjct: 888 RVLVVEDNLINQEVARLILEKGGIKVDVARNGAEALSLVHLPQACYRAVLMDVHMPVMDG 947 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE T++I+ D L +P+IA+TA + + G +SKPI + T++++IG Sbjct: 948 LEATRRIRLDPALARLPIIAMTASVFSEERRLCLEAGMNDQVSKPIDVPQLFATLRRWIG 1007 >gi|307943679|ref|ZP_07659023.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4] gi|307773309|gb|EFO32526.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4] Length = 236 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++VED+ + +E +GY A+ +G+ A+ + D I++D+ L E+ G Sbjct: 1 MKSILVVEDDRNISDVICFALEKAGYRAVVAPDGLAAVTTFKGSSFDFIVLDVGLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +QI+ SE +P++ ++A + D + G + Y++KP S + + + Sbjct: 61 LEVCRQIRCMSE---VPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVSAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +L + +E G+ +G+ L LAR I++D+ L SG + Sbjct: 2 RILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGCSGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + P++ +TA + DE G + Y++KP S + + ++ + Sbjct: 62 LCSRLREKGDW--TPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRR 118 >gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 628 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ ++ + Y +G + E + D++++DI+L + G+ Sbjct: 2 RILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q++ + ++P++ +TA + D+ + G + Y+ KP+ ++ I+ + + Sbjct: 62 LCHQLRSHNF--QVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRS 119 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +VMIV+D+ + + L++ G + + + + PD++++DI++ ++G+E Sbjct: 497 RVMIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ D + IPVI VTA + E++ + G + Y++KP + S I + Sbjct: 557 LCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKR 615 Score = 36.6 bits (85), Expect = 1.2, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 19/46 (41%) Query: 77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 IP + T + + G A++ KP+++ + I+ + Sbjct: 445 IPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVIRDVFRQ 490 >gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 250 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 +V+IVED EL ++ +E GY + ++G A+EL R + D++++D+ L Sbjct: 20 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ IP++ ++A + D + G + Y++KP S+ + Sbjct: 80 PQINGLDICRLLRHQGN--SIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 220 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+K ++I+ED + L + + +GY Q +G L+ A + + ++I++D+ L I Sbjct: 1 MMKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G+E+ ++++E +++ PVI +TA D+ + G + Y++KP ++ + I Sbjct: 61 NGIEVCRRLRE---IKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINAL 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 224 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED + + GY +G+ AL ARQ D+II+D L +SG Sbjct: 1 MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++++ + ++P+I +TA G + Y+ KP SL + ++ ++ Sbjct: 61 LEICRRLRASGD--KVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I ED + SG+ +G + LE A H D++I+D+ L + G Sbjct: 1 MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDRDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I K+++ E +P+I +TA D+ + G + Y++KP + + ++ + Sbjct: 61 FQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLR 118 >gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 239 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + +V+D+ L + GY + E ++ R + PD+ ++DI L + G E+ Sbjct: 7 IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPGMDGFEL 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + E+P+I ++A + D+ + G + Y+ KP S + IK+ + Sbjct: 67 CRRIRAE---AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSR 121 >gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1331 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 772 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ ++ K+ L+E+ G+ +G+EAL + D+++MD+Q+ + G E Sbjct: 548 VLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGREAFDLVLMDVQMPVMDGFEA 607 Query: 65 TKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + I+ +P+IA+TA A+ GD E + G + Y++KP++ S I ++ Sbjct: 608 MRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISRH 664 >gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 234 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D+E + + + + R+G EAL+ ++ PD++++DI + I G E+ Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++ +IP+I ++A + D G + Y+ KP + + +K ++ Sbjct: 66 CRRARQ---FTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 >gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1727 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 70/121 (57%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN N K+ L++ GY A NG+E L+ ++ DV++MD+Q+ ++ GLE Sbjct: 1440 RILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDALKRQPYDVVLMDVQMPQMDGLE 1499 Query: 64 ITKQIKE------DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +++I + D ++ +IA+TA AM+GD E + G + Y++KP+ + + Sbjct: 1500 ASRRICKEYGEGSDGRQKKPWIIAMTANAMRGDREMCLEAGMDDYVTKPVRREELAQALA 1559 Query: 118 K 118 K Sbjct: 1560 K 1560 Score = 74.0 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 63/125 (50%), Gaps = 11/125 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+++IVE++ +N + ++ G L + G++AL+ +++ D++I+ I L +I Sbjct: 1281 KQILIVENHGINQTVITRQVKAWGMKPLVAKTGIDALKCIQENPNIDLVIIGINLPDIDE 1340 Query: 62 LEITKQIK------EDSELQEIPV-IAVTAFAMKGDEERIRK---GGCEAYISKPISLSI 111 +E+ ++I+ + PV + + +A + + + C +++KP+ S Sbjct: 1341 IELARKIRLLEKDLSRNHPDRQPVHLVLFNYASNTNIVKRIERTNINCAGFVNKPLKQSQ 1400 Query: 112 FMETI 116 F T+ Sbjct: 1401 FYNTL 1405 >gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|325579099|ref|ZP_08149055.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae ATCC 33392] gi|325159334|gb|EGC71468.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae ATCC 33392] Length = 235 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L +++ +G+ NG EAL+ ++++D+ + ++G Sbjct: 1 MSKILLVDDDIELTDLLAEVLRLTGFEIEVANNGQEALDKLNASH-QLVLLDVMMPVLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+I++ + IPV+ +TA + D + G + Y+ KP + + IK + Sbjct: 60 IETLKKIRQ---ISNIPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612] gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612] Length = 234 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++I +DN+ +L L+ G+ +Q +NG EA++ D+II+D+ + + SG Sbjct: 7 KRILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVDR-TDDSIDLIILDVMMPQKSGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+E + +P++ +TA D+ G + Y+SKP S + + +K + Sbjct: 66 KACSEIREKTR---VPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRR 122 >gi|296387499|ref|ZP_06876974.1| LadS [Pseudomonas aeruginosa PAb1] Length = 431 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N + R ++ GY NG EALEL + +PD +++D Q+ + G Sbjct: 305 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 364 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 365 TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 421 >gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 1138 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+I +D+ N+ E NG EAL+L ++ D+++MDI + E+ G Sbjct: 1019 KKVLIADDDMRNVFALSTAFEAYNMQIEIANNGREALQLLDKYPDFDLVLMDIMMPEMDG 1078 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+E+ + ++P+IAVTA AMKGD ER + G YISKPI L + ++ ++ Sbjct: 1079 FEAIEKIRENKKFAQLPIIAVTAKAMKGDRERTIQIGANDYISKPIDLDKLISLMRVWL 1137 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++I+ED+ ++ +D G+ NG E LE A Q +PD II+DI L + G Sbjct: 748 KRLLIIEDDVNFSEILKDYAVEHGFDPSVAYNGKEGLETAIQTQPDAIILDIMLPIMDGW 807 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 E+ K++K D + ++IPV ++A ++ DE G ++ KP++ +TIK Sbjct: 808 EVLKKLKNDDKTKDIPVHMMSAASLHKDEP--INKGAIGFLRKPVTEDSLENAFKTIKSL 865 Query: 120 I 120 I Sbjct: 866 I 866 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 K+V+I+ED+ L + + + Q N EA+E LA + D II+DI L + SG Sbjct: 871 KRVLIIEDHTLQSDFIKSSLNERNTVVDQAFNADEAMEILAAKKSYDCIILDINLPDKSG 930 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96 LE+ IK Q P+I TA + ERI + Sbjct: 931 LELLDDIKAIDTYQHTPIIINTAMELSQESTERILR 966 >gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 227 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED + L++ G+ A+ +G AL ++ D++++D+ L +SG Sbjct: 1 MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCRRLRQ---VSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|212691822|ref|ZP_03299950.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855] gi|237708028|ref|ZP_04538509.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|237724821|ref|ZP_04555302.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|265756177|ref|ZP_06090506.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|212665578|gb|EEB26150.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855] gi|229437016|gb|EEO47093.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] gi|229457856|gb|EEO63577.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|263233768|gb|EEZ19377.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1329 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++VEDN+ + + + Y NG EAL++ + KPD+++ DI + E+ G Sbjct: 1070 TQRILVVEDNDDLREYLFHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRG 1128 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI----- 116 E+ IK + IPVI +TA + + + G + Y+ KP ++ I +I Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188 Query: 117 -KKYIGE 122 + + Sbjct: 1189 NRALLRR 1195 >gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D ++ ++ Y +G AL+LA PDV+++D+ L ++ G Sbjct: 1 MTRVLVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++ +P++ ++A ++ G + Y++KP + + ++ + Sbjct: 61 VEVIRGLR---GWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W] gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W] Length = 232 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|71737704|ref|YP_273433.1| sensory box protein/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558257|gb|AAZ37468.1| sensory box protein/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 705 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G L + PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|329956909|ref|ZP_08297477.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328523666|gb|EGF50758.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1352 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDN+ + R + Y NG AL + +++ PD+II DI + E+ G Sbjct: 1091 QKILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIVKEYFPDLIISDIMMPEMRGD 1149 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ + +K D + IP+I +TA + + G + Y+ KP ++ I TI + Sbjct: 1150 ELCQIVKNDIDTSHIPIILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLAN 1209 Query: 122 EA 123 A Sbjct: 1210 RA 1211 >gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A] gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis] gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A] gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 240 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + IV+D++ ++ ++E G+ + +G+ A+E+ KPD+I++D+ L + G Sbjct: 1 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E+ ++I+ +P+I +TA + D + G + Y+ KP ++ + I+ Sbjct: 61 TEVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 114 >gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1027 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ +N L L+ G+ G E +++ ++ P++I MD+Q+ ++G E Sbjct: 817 RILIVEDHPVNRLLLLTLLSEIGFEVKVAEQGQEGIKIWQEWHPNLIFMDMQMPIMNGYE 876 Query: 64 ITKQIKE-----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T++I+E + IP+IA+TA A E GC+ +ISKP +ET+ Sbjct: 877 ATQKIREFEREFTPDHPHIPIIAITASAFTEQREECLTLGCDDFISKPFQREELLETLSL 936 Query: 119 YIG 121 Y+G Sbjct: 937 YLG 939 >gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 252 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+D + +E + NG++AL LAR+ PDV+++D+ L + G+E Sbjct: 18 RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLPGMDGIE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + V+ +TA + + D G + Y++KP S + I+ + Sbjct: 78 VCRQLR---TFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 133 >gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta] Length = 219 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED++ R + +GY +G EA ++ ++I+DI L ++ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ + + + P++ +TA + ++ R + Y++KP + I ++ ++ + Sbjct: 61 GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|39996977|ref|NP_952928.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39983865|gb|AAR35255.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505994|gb|ADI84717.1| winged-helix transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 238 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + +E GY +G ALE + +II+D+ L I G Sbjct: 7 HILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLPGIDGFT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +P++ +TA A GD G + Y++KP +L+ F+ ++ + + Sbjct: 67 VCERVRATD--ARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRS 124 >gi|330820701|ref|YP_004349563.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] gi|327372696|gb|AEA64051.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] Length = 248 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L +E + NG E PD+I++D+ + GL Sbjct: 8 HVLIVDDDRGIRELVGQYLEKNSIRVSLAANGREMRATLEYGAPDLIVLDVMMPGDDGLV 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + + +PV+ +TA + D + G + Y++KP ++ I+ + A Sbjct: 68 LCRELRA-GKFRSVPVVMLTARDEETDRIVGLEMGADDYLTKPFAVRELYARIRAVLRRA 126 >gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 1084 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 74/120 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDN +N ++ +++++SG +G+EA+E + D ++MDIQ+ + GL Sbjct: 958 ARVLLAEDNAINRQVANEILQSSGVSVEPAGDGLEAVEKLWEGGYDAVLMDIQMPGMDGL 1017 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + T+ ++E + +P+IA+TA AM GD E+ G + YI+KPI S+ + T+ ++I Sbjct: 1018 KATRILREYARFDNLPIIAMTAHAMNGDREKSLSVGMQDYIAKPIEPSVLLSTLARWIHR 1077 Score = 69.4 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 13/123 (10%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +++IV+DNEL+ + ++ + + EA+ L R V ++D + Sbjct: 813 RILIVDDNELSRNILSGMLREFQLDPVSAASVGEAVRLCRDAAREGRPYRVALVDWLMPG 872 Query: 59 ISGLEITKQIKEDSELQEIPVI--AVTAFAMKG---DEERIRKGGCEAYISKPISLSIFM 113 ++G + + I L + PVI T + I+KP++ S + Sbjct: 873 MNGKDTAQAICA--ALPKRPVILFMATIHDRPDVLAHIREGKDIPMR-LITKPVTPSSLI 929 Query: 114 ETI 116 + Sbjct: 930 SAL 932 >gi|298480391|ref|ZP_06998589.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298273672|gb|EFI15235.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1511 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1296 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351 >gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551] gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D + + D+ E GY L+ NG +AL+ + + D+II+D+ + ++ Sbjct: 1 MQESILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN-VDLIILDVMMPQMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+E P++ ++A + D+ + G + YI+KP + + ++ ++ Sbjct: 60 GFDLCKVIREQI---YCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 209 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 14 NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 +L ++ GY + NG EAL+ + D +++DI + E+ GL + K+I++ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVCKEIRK--- 57 Query: 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 58 TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106 >gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585] gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585] Length = 232 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALEL ++ D+II D+ + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ L E P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYLLPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254415908|ref|ZP_05029665.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177335|gb|EDX72342.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 366 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ + + GY +G EAL L +PDVI++D+ + +++G+E+ Sbjct: 10 ILIVDDDPNAFDVIEAHLYREGYDLFYASSGEEALNLLDSIEPDVILLDVMMPKLNGIEV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + IK DS + +PVI VTA K D R G + +I+KP+S ++ + Sbjct: 70 CRTIKSDSHWKHVPVIIVTALNSKEDLARSLNAGADDFITKPVSGIELRARVRSMLR 126 >gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 242 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED + ++ G L +G EAL + + KPD++++D+Q+ ++ G ++ Sbjct: 16 VLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAMHQTCKPDLLLLDVQMPQLDGWQV 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+ ++PVI +TA D+ + G + Y+ KP + + + ++ + + Sbjct: 76 LSEIRARG---DMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRS 131 >gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis] gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104] gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68] gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium] gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842] gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi] gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi] gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi] gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245] gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium] gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis] gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104] gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium] gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68] Length = 219 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED++ R + +GY +G EA ++ ++I+DI L ++ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ + + + P++ +TA + ++ R + Y++KP + I ++ ++ + Sbjct: 61 GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|85710035|ref|ZP_01041100.1| DNA-binding response regulator [Erythrobacter sp. NAP1] gi|85688745|gb|EAQ28749.1| DNA-binding response regulator [Erythrobacter sp. NAP1] Length = 264 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + + G+ + ++G A + PD++++DI + GL + Sbjct: 25 ILLVDDEATLREPLAEYLAGQGFCVTEAQSGAAARSALTEVSPDIVLLDIMMPGEDGLSL 84 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + E + +PVI +TA D + G + YI KP + I+ + Sbjct: 85 CRHL---VETRGLPVIFLTARGEATDRIVGLELGADDYIVKPFEPRELVARIRSVLRR 139 >gi|47570808|ref|ZP_00241364.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47552525|gb|EAL11020.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 162 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ ++ + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED + G+ A++ G EAL L KP+VI++DI L +I Sbjct: 1 MGAKILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDID 60 Query: 61 GLEITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI K++ ++ E+ +I VTA D+ R + G + YI KP + + IK Sbjct: 61 GFEICKRVSRQHPEIS---IIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAV 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|320354561|ref|YP_004195900.1| Fis family two component sigma54 specific transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123063|gb|ADW18609.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfobulbus propionicus DSM 2032] Length = 460 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + + L+E GY +G ALE A + D++I DI++ +SG Sbjct: 3 MASILVVDDELSMREFLKILLEKEGYQVATAADGQAALERAEKTAFDLVITDIRMPGMSG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 L++ ++K+ +I VI +TAFA D K G YI+KP ++ I+ + Sbjct: 63 LDLLARLKQLQ--ADIGVIMITAFASPDDAVTAMKSGAFDYITKPFNVDEIKTVIRAVL 119 >gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5] gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED+ ++ + G+ + +G E + L +Q D++++DI L +++G Sbjct: 1 MQRILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E S IPV+ ++A D+ G + YI+KP S+ +K I Sbjct: 61 MDFLKIIREKS---NIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IVED E +L +E GY + +NG++ LE + D++++DI + I+ Sbjct: 1 MNQSILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ +PVI +TA + D+ G Y++KP + + ++ + Sbjct: 61 GIELLRRIRKHD--ANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAAL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|299145146|ref|ZP_07038214.1| putative two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] gi|298515637|gb|EFI39518.1| putative two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_23] Length = 1317 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L +D++ Y+ + ++G+EAL+ + PD+II DI + + GL + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K D + IP+I ++A A D+ G +AYI KP + TI+ + Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186 >gi|295085864|emb|CBK67387.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1317 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L +D++ Y+ + ++G+EAL+ + PD+II DI + + GL + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K D + IP+I ++A A D+ G +AYI KP + TI+ + Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186 >gi|293373563|ref|ZP_06619914.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292631461|gb|EFF50088.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1317 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L +D++ Y+ + ++G+EAL+ + PD+II DI + + GL + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K D + IP+I ++A A D+ G +AYI KP + TI+ + Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186 >gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 246 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+++ED+ + + G+ L +G++ LA KPDV+++DI L ++SGLE Sbjct: 7 TVLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIMLPKLSGLE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ +S +P++ +TA + D R +GG + YI KP S + I+ + Sbjct: 67 VCELIRRESV---VPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRR 122 >gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++I+ED + + +E GY NG LE A D+I++D+ L E+ G Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPELDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++++ ++ P+I +TA D G + YI+KP ++ + ++ + Sbjct: 63 FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3] gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|209964315|ref|YP_002297230.1| transcriptional regulatory protein YycF [Rhodospirillum centenum SW] gi|209957781|gb|ACI98417.1| transcriptional regulatory protein YycF [Rhodospirillum centenum SW] Length = 141 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 61/121 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++ +D + +++ +G+ G L + PD++++D + E G Sbjct: 14 RSILVADDEPSIVLSLEFILKKAGFRVRVVTTGGAVLPAMTEETPDLVLLDAMMPERDGY 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ + IPVI +TA + + + ++ G Y++KP S +ET+++++ Sbjct: 74 DVCQEIRSNPAWSAIPVIMLTARSREVERQKGLALGASDYVTKPFSTRELVETVRRHLDA 133 Query: 123 A 123 A Sbjct: 134 A 134 >gi|160884891|ref|ZP_02065894.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483] gi|156109926|gb|EDO11671.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483] Length = 1317 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L +D++ Y+ + ++G+EAL+ + PD+II DI + + GL + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K D + IP+I ++A A D+ G +AYI KP + TI+ + Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186 >gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++++D+ L D +++ G+ NG + L+ A ++++DI L ISG Sbjct: 1 MKQILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIMLPGISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++++ IPV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 LDVLRRLR---PQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|303327105|ref|ZP_07357547.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302863093|gb|EFL86025.1| sensory box histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 696 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++ EDN +N ++ R+L+ G NG AL+L + + D ++MDIQ+ E+ GL Sbjct: 565 KRVLLAEDNAINQEIVRELLCRLGVDCAVAENGRRALDLISRERYDCVLMDIQMPEMDGL 624 Query: 63 EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ + IPVIA+TA A D R GG + +ISKP+ E + ++ Sbjct: 625 EATRRIRAMPGAVSRIPVIAMTAGATPEDVRRSLAGGLDDHISKPLDPGELREKLNHWL 683 >gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV++V+D KL +D + GYI L+ +G +AL++ + K ++I+D+ + ++ G Sbjct: 15 KVLMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDKNISLVILDVMMPKMDGW 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E K+I++ ++PVI +TA A + DE + G + YI+KP S I + + + Sbjct: 75 ETLKEIRK---FSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRR 131 >gi|158339429|ref|YP_001520606.1| signal transduction histidine kinase [Acaryochloris marina MBIC11017] gi|158309670|gb|ABW31287.1| signal transduction histidine kinase [Acaryochloris marina MBIC11017] Length = 421 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I++DN N+ + +E G L +R+G L+ A KP++I++D+ + +I G E Sbjct: 11 TVLIIDDNPNNLGVALSALEGFGATVLVSRSGESGLQRAAFAKPNIILLDVLMPDIDGYE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + + IPVI +TA D+ + + G YI+KPI + + +K ++ Sbjct: 71 TCRRLKANPQTEPIPVIFMTALTSNNDKVKGLEVGAVDYITKPIYVDELLARVKVHL 127 >gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 226 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D +++ + + GY + +G EA++LA++ KP +II+D+ + E+ G+E Sbjct: 7 TILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKKRKPQLIILDVMMPEMDGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI++ +L I + TA G + YI+KPI + + + + Sbjct: 67 ACEQIRKIPDLDTI-ITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALLRR 124 >gi|294138950|ref|YP_003554928.1| chemotaxis protein CheY [Shewanella violacea DSS12] gi|293325419|dbj|BAJ00150.1| chemotaxis protein CheY [Shewanella violacea DSS12] Length = 120 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 66/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++ V+D+ ++ ++T+G+ + NG EAL++A+Q + D++I D+ + + G Sbjct: 1 MKKILAVDDSASMRQMVCFTLKTAGFDVTEACNGDEALKVAQQGEYDLVISDVNMPIMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++ + P++ +T + ++ R G +I KP + + T++K +G Sbjct: 61 LTLIRNLRTLPNYKFTPLLMLTTESGTEKKQEGRSAGATGWIVKPFNPDQLLATVRKVLG 120 >gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 237 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ ED+ + GY + +G+EAL A + PD++++D+ + I GL++ Sbjct: 2 LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMPGIDGLQVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + + P++ +TA D G + Y+ KP + ++ + Sbjct: 62 RVLRAEGD--RTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116 >gi|237715465|ref|ZP_04545946.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444174|gb|EEO49965.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1329 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + + Y L NG+EAL++ Q D+II DI + + G+E+ Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K++ + IPVI +TA + G +AYI KP S+ + + Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLL 1198 >gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201] gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201] Length = 242 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 226 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++D+ + L RD +E GY L NG+E L++ + PD+II D+ + E+ G Sbjct: 23 TLLLIDDDPNLILLVRDYLEFRGYDMLTAANGVEGLQILEETTPDLIICDVMMPEMDGYT 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++S++ IPVI ++A D G + Y+ KP + ++ + +A Sbjct: 83 FIQNVRQNSQISWIPVIFLSAKGQTCDRIEGLNQGADVYLVKPFEPEELVAQVESSLNQA 142 >gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 301 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ ++ + ++ +G AL G +AL +A + PD+I+MD + + G E Sbjct: 10 ILVVDDSPDSLGMIHQALDQAGLTALIALEGQQALNIAEKMTPDLILMDAIMPNLDGFET 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K+ L +PVI +T D R + G YI+KP+ + + I+ ++ A Sbjct: 70 CRRLKQHPNLACVPVIFMTGLTESEDVVRGLEAGGVDYITKPVRPNELIARIRVHLNNA 128 >gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] Length = 303 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ + D +ET+G L G +AL +A++ KPDVI++D + + G E Sbjct: 9 LVVDDSPEALGFIHDALETAGMEVLVALEGKQALSIAQKMKPDVILLDAMMPVMDGFETC 68 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +K+ + L + PVI +T + D R + G Y++KP+ + +K ++ A Sbjct: 69 RALKKLAGLADTPVIFMTGLSASEDIVRGLEAGGVDYLTKPVKPDELIARLKVHLSNA 126 >gi|75760000|ref|ZP_00740067.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492519|gb|EAO55668.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 117 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +V++V+D +L ++ GY + NG EAL+ D +++DI + E+ Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + K+I++ ++P+I +TA + + + G + YI KP S + ++ Sbjct: 61 DGLSVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAV 117 >gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 238 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IVED+ L + GY +G+ + + Q D +I+D+ L I G Sbjct: 4 MKRILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+I + + S + P+I ++A + + + G + Y++KP S+ +K Sbjct: 64 LDICR--RARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IVED+ +L +D +E +G+ G+ L ++ + D++I+DI L I G Sbjct: 1 MKRILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+++ ++++IP++ V+A + D+ R G + YI+KP S + + +I Sbjct: 61 FEILKRVR---DVKDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHIS 117 Query: 122 E 122 + Sbjct: 118 K 118 >gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 68/121 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D E ++L + GY + T + ++ L++ +Q KPD++++D L ++SG Sbjct: 1 MDRILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDIIKQDKPDLVLLDWMLPKMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ I+ D + +I VI +TA M+ D+ G + Y++KP S+ +K + Sbjct: 61 IELLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILK 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ D +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRADGHA--VPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041] gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041] Length = 229 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D++ ++L I GY L +G EAL + +++I+D+ + E+ G+ Sbjct: 2 KILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ KQI++DS +IP++ ++A D+ + G + Y++KP + M +K + Sbjct: 62 EVIKQIRKDS---DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 >gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+ ED+ +N ++ ++ G+ NG +A+ L + K D I+MD+Q+ + G+E Sbjct: 768 IMVAEDSPVNQRVISHVLHKMGHSFTIVENGQDAVTLWERRKFDAILMDVQMPVMDGIEA 827 Query: 65 TKQIKEDSELQE--IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+E E +P+IA+TA AM+ D ER G Y+SKP+ + E + K+ Sbjct: 828 TRRIRELDAHCENPVPIIALTAHAMQSDRERCLDAGMNDYLSKPLDPGMLAEKLAKW 884 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 16/122 (13%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59 V++V+D+ N + R+L+ + + ++G EAL + ++H +++ D+Q+ I Sbjct: 623 VLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNPIRLLLSDLQMPGI 682 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFME 114 GL + +++ E P + + + +GG + ++ KP S ++ Sbjct: 683 DGLALAQRV-EKLCGSHPPAFILISSSQIE-----LEGGIAPSIVKDFLLKPFDPSHVLD 736 Query: 115 TI 116 + Sbjct: 737 CV 738 >gi|284035960|ref|YP_003385890.1| response regulator receiver sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283815253|gb|ADB37091.1| response regulator receiver sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 365 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED + +L+ G+ NG E + A +PD+I+ DI + E+ Sbjct: 1 MTTQILLVEDEAQIRENVAELLTLHGFQVETAVNGREGISQALLQQPDLILCDIMMPEVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + IP I +TA D R G + Y++KP + + I+ + Sbjct: 61 GYQVLDVVRNNRSTANIPFIFLTAKTEPADLRRGMVMGADDYLTKPFTFQSLLSAIESRL 120 Query: 121 -GEA 123 EA Sbjct: 121 QREA 124 >gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 242 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+IVED+ +L R + GY +G L + D +++D+ L + GL Sbjct: 5 KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I ++A + + + G + Y++KP S+ + +K + Sbjct: 65 EICRRARAMARY--TPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|189465215|ref|ZP_03014000.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM 17393] gi|189437489|gb|EDV06474.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM 17393] Length = 1348 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L+ Y L+ +G E +A PD+II DI + ++ GLE Sbjct: 1098 TILLVEDNKEFRHYMFELLSKK-YNVLEAGDGEEGERIATTKFPDLIISDIMMPKVDGLE 1156 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+IK + ++ IPVI +TA + + + G + YISKP +L I + I+K I E Sbjct: 1157 LCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1215 >gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC 15579] gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC 15579] Length = 234 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + ++ G + ++G++AL L +IIMDI + ++ G++ Sbjct: 9 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + Y++KP ++ + +K + Sbjct: 69 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 124 >gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 249 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + +E G ++G EAL+ RQ +PD++++DI L ++ G+++ Sbjct: 22 VLVVEDEPAIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDGVDV 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+ DS ++PVI VTA A D+ + G + Y+ KP + + ++ + Sbjct: 82 LRMIRNDS---DVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 136 >gi|75906349|ref|YP_320645.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700074|gb|ABA19750.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 470 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ G+ + NG AL + PDVI++D+ + E+ G ++ Sbjct: 13 ILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQMLLPDVILLDVNMPEMDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K+D +IPVI ++A D+ + G YI+KP + + I+ I Sbjct: 73 CQQLKDDEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQI 128 >gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1686 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+LN +L +L+ +G +G+EA+E Q D ++MD Q+ + G E Sbjct: 1346 VLLVEDNQLNQELAVELLRQAGINVTVANHGLEAIERVEQQYFDCVLMDCQMPVLDGYEA 1405 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+E + +P++A+TA AM GD E+ G I+KP+ + + ++I Sbjct: 1406 TRRIRELPQFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARWI 1461 >gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] Length = 225 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 71/120 (59%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++IV+D KL +D +E G+ L+ +G+EA+++ +K ++I+D+ + ++ G Sbjct: 5 KILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNKDIALLILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++++ + ++P+I +TA A + DE + G + YI+KP S I + ++ + Sbjct: 65 QVCREVRQ---VSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRR 121 >gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 240 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 74 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRR 129 >gi|307152914|ref|YP_003888298.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306983142|gb|ADN15023.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 484 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+K+ R ++E GY +G + LE + +P +I++D+ + ++ GL++ Sbjct: 12 ILVVDDVPSNLKVLRGILEPIGYELTFATSGKQTLERVERVRPALILLDLMMPDMDGLQV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + + Q+IP+I +TA + + G YI+KP + + + IK ++ Sbjct: 72 CQALYSNPMYQDIPIIFLTASQEEEHLTYAFEQGAVDYINKPFNKAELLARIKTHL 127 >gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 888 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNELN ++ +L+ G NG ALE+ Q D+I+MD+Q+ + GL Sbjct: 547 RILLAEDNELNQQVALELLRAVGADVSIAGNGAIALEMVAQTHYDLILMDMQMPVMDGLA 606 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ ++E + Q P++A+TA M GD ER G + +I+KPI ++++ Sbjct: 607 ATRLLREREDVGQHTPILAMTANVMAGDRERCLAAGMDDHIAKPIDPDRLYAALQRW 663 Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQ 57 +++++ +D+ + L+ + ++ +G +AL++ +V+++D + Sbjct: 401 RRMLVADDSASARTIMAALLRSMSFVVDTAESGQQALQMIAGAEQEGQPYEVVLLDWHMP 460 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+E +++ Q + VT + + + G + + KP+ S+ +T+ Sbjct: 461 GLDGIETGRRLIARGMGQRPYRVMVTGYGREEVFRQADTAGFDRVLVKPVCASVLFDTV 519 >gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1523 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ +++ GY+A NG E L+L ++ + D+I+MD Q+ + G E Sbjct: 1251 RILLAEDNPVNQKVALRQLQSLGYMADVVANGQEVLDLLQRVQYDLILMDCQMPVMDGYE 1310 Query: 64 ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+++++ VIA+TA AM+ D ER + G + Y+SKP+ + + Sbjct: 1311 ATRRLRQQERGSGHRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLERVLNHW 1368 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 5/126 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 K++++V+DN N K+ R G + + N +AL+ RQ + ++D+Q+ Sbjct: 1097 KRLLVVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQAAREGIPFPLAVLDMQMP 1156 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G + + IK D EL + ++ +T+ + R + G AY++KP+ + E + Sbjct: 1157 EVDGETLGRWIKADPELSQTQLVMMTSLGLGEHSRRAAEIGFAAYLTKPVKQTRLQEALV 1216 Query: 118 KYIGEA 123 +G++ Sbjct: 1217 MALGKS 1222 >gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 975 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN R ++ +S + +G ALE AR PD+I+ D+ + + G Sbjct: 613 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARACVPDLILTDVMMPRLDGFG 671 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + ++++ D + +PV+ ++A A + + G + Y+ KP S + + Sbjct: 672 LLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARV 724 >gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] Length = 245 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +L + SG+ +G EA+++ + PD+I++D+ L +I G Sbjct: 10 ATIVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVMLPDIDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++I++ E PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 70 TVTRRIRQQGI--EAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 127 >gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++++D L ++ Y+ NG AL+L PD++++D+ L + SG Sbjct: 1 MKKILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+I + + +PVI ++A D+ + G E Y++KP + IK + Sbjct: 61 YDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 225 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ +L R ++E SG+ + +G A+ L D+II+D+ + ++ G E+ Sbjct: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMPKMDGFEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++ +IP++ +TA D+ + G + Y+ KP +K + Sbjct: 64 SEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 118 >gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI] gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|71906612|ref|YP_284199.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71846233|gb|AAZ45729.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1064 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 69/120 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+E+N ++ +++ G + +G++A+E A Q ++I+MDIQ+ + GLE Sbjct: 846 RVLVVEDSEINREIVAEILMEVGIVVDTAEDGVKAVEKAAQTHYNLILMDIQMPNMDGLE 905 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+QI+ + IP+IA+TA A R G +++KP+ + + +++ A Sbjct: 906 ATRQIRRHAVNPNIPIIALTANAFDSTRRETRLAGMNDFVTKPMEPATLYTALLRWLPAA 965 >gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 717 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61 ++++ EDN +N KL ++ +GY NG +A++L R D+I+MDIQ+ E+ G Sbjct: 594 RILLAEDNPVNQKLAVLILNKAGYQVEVASNGRKAVDLFTRRPENFDLILMDIQMPEMDG 653 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L TK+++ +P++A+TA AMKGD E K G YI+KP+ I E I+K++ Sbjct: 654 LAATKELRSRG-FNTVPIVAMTANAMKGDREICLKAGMNDYITKPVKREIIFEIIEKWLH 712 Query: 122 E 122 Sbjct: 713 R 713 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 68/124 (54%), Gaps = 7/124 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNG---MEALELARQHK--PDVIIMDIQLQ 57 K+V++V+DN N+ + R ++ + + + L+ A ++ D+II+DIQ+ Sbjct: 442 KRVLVVDDNLTNLSILRHILMAAELHVVAIHDSSNVRSVLQQAIENHALFDLIILDIQMP 501 Query: 58 EISGLEITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G + I+ E +E IP++A T+ + + + +R ++ G +A+++KP I +TI Sbjct: 502 APDGYALAHIIRHELAETATIPLLAYTS-STERNAQRCKEAGFDAFLTKPTRREILFKTI 560 Query: 117 KKYI 120 +K + Sbjct: 561 EKLL 564 >gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 233 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+I+ED++ ++ + G + +G E L + D++++D+ L SGL Sbjct: 9 RSVLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLPGRSGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ + PVI VTA A D + G + Y++KP I+ Sbjct: 69 EVCREIR---RVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARR 125 >gi|288940785|ref|YP_003443025.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896157|gb|ADC61993.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1053 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 69/120 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDN +N ++ DL++ G NG EA+ELA + +I+MD+Q+ + GL Sbjct: 699 ARLILAEDNAVNREVALDLLQAVGLQVDTAENGREAVELAMTGRHALILMDVQMPVMDGL 758 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T+ I+ S ++ P++A+TA A + D + G ++ KP+S ET+ +++ + Sbjct: 759 EATRLIRALSGWRDKPILAMTANAFQEDRRHCLEAGMNDFVPKPVSPRDLFETLLRWLPK 818 >gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED L ++ Y + EALE ++ D+ I+DI L ++S Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLTICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|197336844|ref|YP_002158691.1| transcriptional regulator [Vibrio fischeri MJ11] gi|197314096|gb|ACH63545.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 766 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN N + ++ + +GY +NG EA+ A + D+I MDI + E+ G+ Sbjct: 501 ILVVEDNHANQIVIKNTLNYAGYSIDIAQNGKEAITKAINTQYDLIFMDISMPEMDGMTA 560 Query: 65 TKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ S+ Q +P+IA+TA A+ GD+ER + G Y+SKP S S +E + KY+ Sbjct: 561 TKKIRSLSDTHQNMPIIALTAHALSGDKERFIEAGMTDYLSKPFSRSNLLECLAKYL 617 >gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1959 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDN +N ++ +L++ +G +G EA+++ ++ +++MD+Q+ ++ GL Sbjct: 1626 ARVLLAEDNAVNREVAVELLQAAGMQVDLAVDGQEAIDMCQRTAYALVLMDMQMPQVDGL 1685 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ D+ L ++P++A+TA A D G +I+KP+ + + ++ Sbjct: 1686 EATRRIRADARLADLPILAMTANAFGEDRAACLAAGMNDHIAKPVDPQVLYSHLLHWL 1743 >gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] Length = 239 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + +V+D+ L + GY + E ++ R + PD+ ++DI L + G E+ Sbjct: 7 IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPGMDGFEL 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + E+P+I ++A + D+ + G + Y+ KP S + IK+ + Sbjct: 67 CRRIRAE---AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSR 121 >gi|317125394|ref|YP_004099506.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589482|gb|ADU48779.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 226 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ + D + G+ +Q +G A+ H+PD++++D+ L G Sbjct: 1 MSRILVVEDDLTINQTVTDRLRAEGFDVVQAHDGPRAVAAHATHEPDLVVLDVMLPGFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ + +PV+ +TA + D G + Y++KP + + ++ + Sbjct: 61 LEVCRRIQAS---RAVPVLMLTARDDETDLPVGLAVGADDYVTKPFRMRELVARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 232 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 8 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ E IP++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 68 LEVARRLR--GEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 125 Query: 122 E 122 Sbjct: 126 R 126 >gi|288958710|ref|YP_003449051.1| two-component response regulator [Azospirillum sp. B510] gi|288911018|dbj|BAI72507.1| two-component response regulator [Azospirillum sp. B510] Length = 135 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 81/120 (67%), Positives = 104/120 (86%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K V+IVEDNELNMKLF DL+E GY LQTR G+EA+ LAR+H+PD+I+MDIQL E+SG Sbjct: 16 TKTVLIVEDNELNMKLFHDLLEAHGYGTLQTREGVEAMRLAREHRPDLILMDIQLPEVSG 75 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+T+ IK+D EL+ IPV+AVTAFAMKGDEE+IR+GGCE Y++KPIS+ F+ET+KK++G Sbjct: 76 LEVTRWIKDDPELKSIPVVAVTAFAMKGDEEKIRQGGCEDYVAKPISVVKFLETVKKFLG 135 >gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 231 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED E + +E GY + ++G E LEL + KP +I++D L G+ Sbjct: 5 KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWMLPVYDGIT 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + +IP+I +TA D G + Y++KP + I+ + Sbjct: 65 VLRRIRK---VSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRR 120 >gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2] gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2] Length = 508 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++ EDN +N L ++ G+ +G + L + H D I+MDI++ + G Sbjct: 382 RHVLVFEDNPVNRALMSAMLRRLGHTLDFAADGPDGLNQLQHHVYDAILMDIEMPLMDGY 441 Query: 63 EITKQIKEDSELQEIP---VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+T+ I++ +P +IAVTA AMKG E G + Y+ KP++ S I + Sbjct: 442 EVTRHIRQHEATHALPRRHIIAVTAHAMKGQRELCLAAGMDDYLPKPVNPSDLAAAIARA 501 >gi|224025799|ref|ZP_03644165.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM 18228] gi|224019035|gb|EEF77033.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM 18228] Length = 903 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN R +++ Y ++ NG E L+ A ++ PD II D+ + + G+E Sbjct: 655 TILVIDDNLDIRDYVRSVLQDE-YNVIEAANGQEGLQQAMKYVPDAIICDVMMPVMDGME 713 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPV+ +TA+A+ + + + G ++YISKP S + ++ I Sbjct: 714 CCRRLKSEVQTSHIPVMMLTAYAVDEQKIKGYECGADSYISKPFSARLLTVRLRNLI 770 >gi|182680446|ref|YP_001834592.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636329|gb|ACB97103.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 273 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D+ L + GY N EA R D+I++D + +G Sbjct: 46 AHLLIVDDDRRIRALLARFLADQGYRVTTAGNAEEATASLRNFAFDLIVLDAMMPGENGF 105 Query: 63 EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++ +L +PV+ +TA D R + G + Y+ KP I + Sbjct: 106 DLLTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILR 165 Query: 122 EA 123 A Sbjct: 166 RA 167 >gi|197116776|ref|YP_002137203.1| response regulator [Geobacter bemidjiensis Bem] gi|197086136|gb|ACH37407.1| response regulator [Geobacter bemidjiensis Bem] Length = 204 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D N+ + ++ Y L +G EAL +++PD+I++D+ + E+ GL Sbjct: 4 KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEALLALAENRPDLILLDVMMPEMDGL 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + +K+DS ++IPVI VTA + + DE R K G ++SKP++ I + ++ Sbjct: 63 EVCRILKDDSRYRDIPVIFVTALSDEVDESRGFKAGAVDFLSKPVNPVILSHRVAVHL 120 >gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 659 Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 73/121 (60%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ ED+ +N ++ +L+ ET G+ +G +ALE+A QH+ D+I+MD+Q+ E+ GL Sbjct: 530 RILVAEDDWVNQEVALELLRETLGFAVDIAPDGAQALEMALQHRYDLILMDMQMPELDGL 589 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I+E + ++P+IA+TA A D R G +I+KP+ + +++ E Sbjct: 590 GATQAIREIPDYADVPIIAMTANAFAEDRARCMDAGMNDFIAKPVDPDNLFMIMLRWLKE 649 Query: 123 A 123 A Sbjct: 650 A 650 >gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC3088] gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC3088] Length = 233 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + R +E + ++ N M+A + +PD++++D L SG+E+ Sbjct: 6 VLVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIIIDRRPDIVLLDWMLPGGSGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K D +EIPVI +TA + + + G + YI+KP + + I+ + + Sbjct: 66 LRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRALLRRS 124 >gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I+ED +L RD E +G+ A G E L LA +I++D+QL ++ Sbjct: 1 MTTRILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+++ +E+P++ V+A + D+ R G + YI+KP S S + K ++ Sbjct: 61 GFELCRQIRKN---KEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHL 117 >gi|257468982|ref|ZP_05633076.1| transcriptional regulatory protein [Fusobacterium ulcerans ATCC 49185] gi|317063230|ref|ZP_07927715.1| signal transduction regulator [Fusobacterium ulcerans ATCC 49185] gi|313688906|gb|EFS25741.1| signal transduction regulator [Fusobacterium ulcerans ATCC 49185] Length = 239 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I++D ++L + +E GY T G + L + P++I++D+ L ++ Sbjct: 1 MGKKILIIDDEIHILELLKLNLEIYGYEVFTTDTGNNVMSLIEKINPNIILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+I+ + L +I ++ ++A + + D+ + G + YI+KP SL + I + Sbjct: 61 GIDICKKIRNNPLLNKIRILIISAKSEEIDKIVCLEIGADDYITKPFSLREMIARINAFS 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 239 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE 58 M K+V+IVED+ L R + GY +G L L Q P D +++D+ L Sbjct: 1 MSTKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL++ ++ + + +P+I ++A + + G + Y++KP S+ + ++ Sbjct: 61 VDGLQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRA 118 Query: 119 YIGEA 123 + A Sbjct: 119 LLRRA 123 >gi|17229799|ref|NP_486347.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131399|dbj|BAB74006.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 470 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++ G+ + NG AL + PDVI++D+ + ++ G ++ Sbjct: 13 ILVVDDTPDNLRLLSAMLTARGFEVRKALNGKMALTACQMLLPDVILLDVSMPDMDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D +IPVI ++A D+ + G YI+KP + + I+ I Sbjct: 73 CQQLKADEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQI 128 >gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125] gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125] Length = 232 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D++ + ++ G Q ++G+EALE + ++++D+ + + G++ Sbjct: 7 VLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQT 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E + IP+I ++A + + D+ + G + Y++KP + + +K + Sbjct: 67 TLKIRE---ARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRR 121 >gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++EDN ++ + +E +GY L +G+ L AR++ PD++I+D+ L + Sbjct: 1 MDQRILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +++++ +P+I +TA + + + G + Y++KP + +K + Sbjct: 61 GAEIARRLRK---TSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2] gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2] Length = 931 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 K V++V+D+ N+ ++ + G L NGM+ L+L K D+++MDI + + G Sbjct: 812 KTVIVVDDDHRNIYALKNALNKEGMNVLTAENGMQCLDLIMGTEKIDIVLMDIMMPVMDG 871 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K+++ Q++P+IA+TA AMKGD E+ + G YISKP+ L + ++ ++ Sbjct: 872 YETMKRLRGLDRHQDVPIIALTAKAMKGDREKCMEAGATDYISKPLKLDQLLSVMRVWL 930 >gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 340 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SGY L NG +AL+ A Q +PD++++D + I G E+ Sbjct: 26 VLIVDDVPDNLAVLHDALDESGYTVLIATNGEQALQRAAQARPDIVLLDAMMPGIDGFEV 85 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121 +++K D+ IP++ +T + G Y++KPI + + ++ Sbjct: 86 ARRLKADAATAHIPIVFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVLARMNVHLQGAR 145 Query: 122 EA 123 A Sbjct: 146 RA 147 >gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|253572186|ref|ZP_04849590.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251838366|gb|EES66453.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1366 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED++ + L Y ++ NG E + +A ++ P +II DI + G E + Sbjct: 1116 LIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1174 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E+ IP+I +TA A D + + G + YI KP + + E +K I + Sbjct: 1175 REIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQ 1231 >gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G + + + D+II+DI + ++ Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 806 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ N + L++ SG+ +NG +A+E D I MDI + + G++ Sbjct: 686 RILLVEDDPANRFAMQKLLQKSGHHVQTAQNGSQAVEAFAHSHFDCIFMDIHMPVMDGVQ 745 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + ++P+IA+TA+ + GD E+ + G + Y+ KP+ + +KK + Sbjct: 746 ATRKIRSMQDSGIAPKVPIIALTAYTLNGDREKFLESGMDEYLGKPVQMQDIENVLKKLL 805 Query: 121 G 121 G Sbjct: 806 G 806 >gi|126659225|ref|ZP_01730363.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126619530|gb|EAZ90261.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 635 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 59/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN N+++ ++ + Y L + G A+ A++ PD+I++D+ + + G E Sbjct: 6 ILVVDDNPNNIQVLFQCLKKADYKVLIAQTGESAINQAKKTLPDLILLDVMMPIMDGFET 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K E +IPVI +T ++ + G YI+KP + +K ++ Sbjct: 66 CSSLKSLPETVDIPVIFMTVLNETFNKVKGFSLGAVDYITKPFIQEELLARVKLHL 121 >gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 353 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SGY L G AL A Q PDV+++D + + G E+ Sbjct: 30 VLIVDDVPDNLAVLHDALDESGYTVLVATGGETALARAAQAMPDVVLLDAMMPGMDGFEV 89 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121 +++K IP+I +T E G Y++KPI + + ++ Sbjct: 90 ARRLKARPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMNVHLQGAR 149 Query: 122 EA 123 A Sbjct: 150 RA 151 >gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D++ ++L R ++ GY L NG E +E+ + K ++I+DI L GL+I Sbjct: 6 ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIMLPGEDGLQI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E IP+I V+A + D+ G + Y++KP + M +K + + Sbjct: 66 CRKIRESYI---IPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRS 121 >gi|89901045|ref|YP_523516.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345782|gb|ABD69985.1| periplasmic sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1009 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 72/121 (59%), Gaps = 6/121 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN++N + +L+ G ++ NG EAL+ +QH D ++MD+Q+ + GL+ T Sbjct: 669 LLVEDNDINREFATELLRGEGIEIIEAVNGQEALDKVQQHDLDAVLMDLQMPVMDGLQAT 728 Query: 66 KQIKEDSELQE------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++I+ + E +P+IA+TA AM D ++ R+ G +ISKP+ M T+ K+ Sbjct: 729 RRIRALANTPEGARFASLPIIAMTALAMPQDAQKSREAGMNDHISKPVDPEHLMATLAKW 788 Query: 120 I 120 I Sbjct: 789 I 789 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEIS 60 ++++V+DNE + ++ + A +G AL + + H D+++MD ++ ++ Sbjct: 519 RMLVVDDNEASCEIMAQTLRYFHVDASTANSGPAALTILKNAAAHPFDLVLMDWRMPGMN 578 Query: 61 GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T++I+ + + P V+ V+A+ + + + + +++KP+S S ++T+ Sbjct: 579 GDEVTRRIRAEPGIAHQPKVVMVSAYGHEDVIKLAEQARVDGFLTKPVSPSTLLDTVLSV 638 Query: 120 IGE 122 +G Sbjct: 639 LGR 641 >gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ +++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] Length = 224 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + ++ + + NG EALE D+I++DI L +++G E Sbjct: 2 RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIMLPKLNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++E+ E V+ +TA D+ + G + Y+ KP + I+ + Sbjct: 62 VVKKLRENKN--ETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRR 118 >gi|254447699|ref|ZP_05061165.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] gi|198263042|gb|EDY87321.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] Length = 229 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED ++ G+ + G EA E H D I++D+ L + + Sbjct: 1 MKPQILIVEDEPAIADTLLYALKKEGFNVHWAQLGGEAEEWLSCHSADGIVLDVGLPDTN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+I++++ ++P+I +TA + D + G + Y+ KP S + IK + Sbjct: 61 GFELCKRIRQNNT--QVPIIFLTARKEEVDRIVGLEIGGDDYVVKPFSPRELVARIKAIL 118 Query: 121 GEA 123 A Sbjct: 119 RRA 121 >gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] Length = 236 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I +D E ++L +E I +NG++A E+ + D+ I+DI + +I G Sbjct: 1 MAKILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIENNDIDLAIIDIMMPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+I+E E IPVI ++A + D+ + G + YI+KP + + +K + Sbjct: 61 YHLVKKIREKYE---IPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 228 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D++ ++L RD +E + + EA + +QH +++DI + +G E Sbjct: 6 TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHAIHCMVLDIMMPGQNGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +S +P++ ++A + D+ R G + YI K S + +K + + Sbjct: 66 LCRRIRAES---HVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS 122 >gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + +++ Y G EALE + K D+ I+D+ L I G EI Sbjct: 3 ILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLPGIDGFEI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E PVI +TA D+ G + YI KP + + +K + Sbjct: 63 LKKIRERYTF---PVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRR 117 >gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D+ L D++E G+ Q NG + LE D++++D+ + +++G Sbjct: 1 MAKVLLVDDDTELTALLHDILEMEGFEVEQANNGEQGLEKINA-SIDLVLLDVMMPKMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++E PV+ +TA + D + G + Y+ KP S + ++ + Sbjct: 60 TEMLRRLREK---YSTPVLMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARMRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|262198228|ref|YP_003269437.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] gi|262081575|gb|ACY17544.1| response regulator receiver protein [Haliangium ochraceum DSM 14365] Length = 305 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 68/121 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++ ED++ + L +E +G+ L+ NG AL+ R + PD++++D+ + E+ G+ Sbjct: 5 KRILLAEDDDAIVDLVTAALEGAGFARLRAENGARALDFLRIYTPDMLVLDVMMPEMDGI 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ED L EIP++ +TA + ++ G +AY+ KP L F I + Sbjct: 65 EAAQHIREDELLAEIPILMLTALSGVENKIDGLDAGADAYLPKPFDLREFKAQINALLRS 124 Query: 123 A 123 + Sbjct: 125 S 125 >gi|254410095|ref|ZP_05023875.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183131|gb|EDX78115.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 372 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED E + +L+E + +G L+L Q++PD+I+ D+ + ++ G Sbjct: 9 MKKILIIEDEETVRENLMELLEAEDFEVCGAGDGCAGLDLVPQYQPDLILCDVMMPKLDG 68 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++++ IP + +TA K D + + G + YI+KP S+ + I + Sbjct: 69 FGVLNTLRKNPVTATIPFMFLTARTDKTDLRQGMELGADDYITKPFSVDELLNAIASRL 127 >gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 234 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ R+ +E G + +G L+ A + DV+++D+ L GLE+ Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ S ++PVI +TA + D + G + Y++KP S + I+ + A Sbjct: 70 RELRSRS---DVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRA 124 >gi|159026609|emb|CAO86541.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 368 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N++L ++ GY + NG AL R PD+I++DI + +++G ++ Sbjct: 10 VLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTVRSLIPDLILLDINMPDLNGYQV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D + +EIPVI ++A D+ + + G YISKP M I+ + Sbjct: 70 CEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQL 125 >gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 303 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D+ + + + +E++G L G +AL +A++ PDVI++D + + G E Sbjct: 11 VLIVDDSPDTLGMLNEALESTGMTTLVALEGKQALTIAQKLTPDVILLDAIMPGMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + L+ IPVI +T + + G Y++KPI+ + I ++ Sbjct: 71 CEKLKANPSLKNIPVIFMTGLSDTDSIVKGFAAGGVDYLTKPINPKELVARINAHL 126 >gi|29349545|ref|NP_813048.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341454|gb|AAO79242.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1310 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN F + L +G+EAL+L + + PD+I+ D+ + ++G Sbjct: 1055 SYTILVVDDNSDLTDFFSKALSEYFKKVLIASDGVEALQLVKSYTPDIIVSDVMMPRMNG 1114 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +KED + IP+I +TA K + K G + Y++KP + + ME I+ + Sbjct: 1115 YELCKGLKEDLAVSHIPIILLTARDDKESQISGYKNGADGYLTKPFEIEMLMELIRNRL 1173 >gi|67925918|ref|ZP_00519199.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67852236|gb|EAM47714.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 157 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V++VED+ K+ ++ +G+ + +G++ALE + D+I++DI + +++G Sbjct: 37 MRAVLLVEDSPAQQKMISTILTKNGWQVMIAEDGIQALESINESSLDLIVLDIVMPKMNG 96 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++IK + + Q +P++ ++ + D K G +AYI+KP + TI++ + Sbjct: 97 YEVCRRIKTNPKTQNVPIVMCSSKGEEFDRYWGMKQGADAYIAKPFEDVELIGTIQQLLR 156 >gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 227 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED L+ GY +G AL D++++D+ L + G Sbjct: 1 MTRVLIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLMLPGMPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ +P+I +TA + D + G + Y++KP S + ++ + Sbjct: 61 TEVCRQLR---LSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 224 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+I+ED + + GY + +G E LELA + +I++D+ L ++ Sbjct: 1 MNHRVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPSLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ +++ P+I +TA D G + YI KP ++ + I+ Sbjct: 61 GMEVCRRIRA---VKQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1265 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 73/121 (60%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED ++N+ + L++ GY + +G +A+E+ + D+++MDI++ + G++ Sbjct: 1143 KVLLVEDEDINVVTVKALLKKHGYAVIVATDGQQAIEVLSGKEIDLVLMDIRMPIMDGVQ 1202 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ +++P+IA+TA+AM GD E+ G YI+KP+ + E IK+ + Sbjct: 1203 ATLAIRSGKAGQDKKDVPIIAMTAYAMTGDREKFLAAGMNDYIAKPVDIQDLKEVIKRVL 1262 Query: 121 G 121 G Sbjct: 1263 G 1263 >gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii DSM 4541] gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii DSM 4541] Length = 239 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++V+D+ L + G+ N + + + +I++D+ L G Sbjct: 4 SYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ + IP+I VTA + D + G + YI KP + + I+ + Sbjct: 64 LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135] gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135] Length = 1325 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDNE +++ D++ Y NG E L+ A + PD+II D+ + +SG Sbjct: 1067 QTILLVEDNEDMLQVLVDMLSPL-YKVKIAMNGQEGLDKALEESPDLIISDVMMPVMSGT 1125 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++K + IPVI +TA + + + G + Y+ KP + I + I + Sbjct: 1126 EMCMKLKTNFNSSHIPVILLTALTSDDSKLKGVQCGADDYVEKPFNHKILLGKIANILR 1184 >gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 225 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D+ +L ++T GY +G EA L + + + ++D+ + G Sbjct: 1 MIHILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVMMPNKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+ ++PVI +TA D+ER G + Y++KP + IK + Sbjct: 61 YQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 269 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + + G+ NG +AL AR+ KPD +++DI L ++ GL+ Sbjct: 44 RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQ 103 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ D+E +IPV+ +TA D G + Y++KP SL + ++ I + Sbjct: 104 VLSRLRADAE--DIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 161 >gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1198 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V+I +D+ N+ +E L +G EAL++ + + DV++MD+ + E+ G Sbjct: 1076 KTVLIADDDVRNIFSLTKALEQHKMKVLAATDGKEALQILKDNPMVDVVLMDMMMPEMDG 1135 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ S + +P++AVTA AM GD E+ G YISKP+ + + ++ ++ Sbjct: 1136 YESTREIRKISAYKHLPILAVTAKAMMGDREKCIAAGASDYISKPVDVDQLISLLRVWL 1194 Score = 87.5 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED+ K + Y + G +ELA +KP I++DIQL G ++ Sbjct: 808 ILIIEDDTNFAKTLLNFTRKRDYKGIVAVRGDVGIELANHYKPLAILLDIQLPVKDGWQV 867 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME---TIKKYIG 121 +++K + + IPV +++ ++ G +I+KP++L + ++ + Sbjct: 868 MEELKSNPVTKPIPVHIMSSL---EMRKKSLLRGAVDFINKPVALEQMKQIFTKLEDALS 924 Query: 122 E 122 Sbjct: 925 R 925 Score = 67.5 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 48/103 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IVE+N+ + + + N +++ + + D +I+D+ + + + Sbjct: 928 KKVLIVEENKQHAEALSYFLSNYNIQTEIAGNVGDSIGALHKKEVDCVILDMGIPDKNAY 987 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 + + IK+ L+ +P+I T + EE + ++ + K Sbjct: 988 DTLETIKKSEGLENLPIIIFTGKNLSKGEETRIRQYADSIVVK 1030 >gi|29347801|ref|NP_811304.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339702|gb|AAO77498.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1377 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED++ + L Y ++ NG E + +A ++ P +II DI + G E + Sbjct: 1127 LIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1185 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E+ IP+I +TA A D + + G + YI KP + + E +K I + Sbjct: 1186 REIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQ 1242 >gi|300868158|ref|ZP_07112790.1| Two-component response regulator [Oscillatoria sp. PCC 6506] gi|300333782|emb|CBN57970.1| Two-component response regulator [Oscillatoria sp. PCC 6506] Length = 460 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED L + +L+E + NG +++A PD+I+ D+Q+ ++ G Sbjct: 1 MIKILVIEDESLIRETLVELLEAHDFRVSAVENGRMGVKVALSEIPDLILCDVQMPDLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K ++++ +P I +TA + K + R + G + Y++KP + + I + Sbjct: 61 YEVLKALRQNRLTSAVPFIFLTAQSAKAEFRRGMELGADDYLTKPFTKEELLGAIASILS 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] Length = 249 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D L + SG+ NG EA+++ Q PD+I+MD+ L +I G Sbjct: 7 ATIVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVMLPDIDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++I++ E PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 67 TVTRRIRQQGM--EAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|297567182|ref|YP_003686154.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851631|gb|ADH64646.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 219 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 68/123 (55%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED+ L ++++G L+ R+G+EA++ + D++++D+ L S Sbjct: 1 MPAKVLVVEDDPGIRMLVATTLQSAGLAVLEARDGVEAMDFIPEA--DLVVLDVGLPRQS 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+++ ++PV+ +T + + + R + G + Y++KP S+ +K + Sbjct: 59 GWEVLEAIRQN--FGQLPVLMLTGHSDETNRVRGLESGADDYLTKPFSVRELAARVKALL 116 Query: 121 GEA 123 + Sbjct: 117 RRS 119 >gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM 30120] gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM 30120] Length = 239 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D+ L + G+ N + L + +I++D+ L G Sbjct: 4 SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESIHLIVLDLMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ + IP+I VTA + D + G + YI KP + + I+ + Sbjct: 64 LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|209528443|ref|ZP_03276873.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] gi|209491122|gb|EDZ91547.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328] Length = 352 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+DNE+N L ++ GY L NG EAL++ R D++++DI + +++G ++ Sbjct: 8 VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTALDLVLLDIMMPQMNGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D +L+ IPVI ++A R + G E Y+SKP + + I + Sbjct: 68 LESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACL 123 >gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] Length = 1331 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++++D++ +KL + G+ + +G EAL + +++ D II+DI + ++ Sbjct: 1 MQKKILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIMMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ + I++ P++ ++A D+ + G + Y++KP S+ I+ Sbjct: 61 GLDVCRSIRKS---YNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELNSRIRANF 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L] gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L] Length = 549 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+DN N+ +E++G+ +G +E PD+I++D+ + I G E Sbjct: 9 TILIVDDNPNNLSFLYKTLESAGFQVRVEMDGEGTIEQVEYEPPDLILLDVNMPVIDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + ++IP+I +TAFA + + G YI KP + ++ ++ Sbjct: 69 TCKKLKNNPISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQEEVLARVRLHL 125 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 65/109 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+DN+ N + +++E G+ + NG + L++A +PD+I+ D+ + + Sbjct: 425 RKLLVVDDNKENRLVLLNMLEPLGFEVVTAENGQQGLDVAIAIRPDLILTDLFMPVKTAF 484 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + +++E +L+ +P+IA++A + +++ + GCE ++ KPI Sbjct: 485 TMVPEMREIPDLKNVPIIALSARTFEIVQKQSQMLGCEGFLPKPIDQDR 533 >gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] Length = 225 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED K + L+E + + NG +AL+ DVI++DI + + +G+E Sbjct: 2 RILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKKNGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + QI+ SE +PV+ +TA + D + G + Y+ KP + F+ +K Sbjct: 62 VLSQIR--SEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARR 118 >gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 222 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + M + + +GY NG +A+ LA + D++I+D+ + +I+GLE Sbjct: 2 KILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIPKINGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + +I ++A D+ G + Y++KP + + I+ + Sbjct: 62 VCRILRREKNPAY--IILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRR 118 >gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 228 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+TK+I++ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELTKEIRKSN--PRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|291569797|dbj|BAI92069.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 372 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ V+D+ N+ L ++ GY +G AL+ + P ++++D+ + I G E Sbjct: 14 HILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ + L IP++ +TA G + +I KP+ + + ++ + Sbjct: 74 VTRRIRNNPNLPFIPILLITAHDQSS-VVEGLDAGADDFIRKPVEIDELLARVRSLLR 130 >gi|258593328|emb|CBE69667.1| putative response regulator in two-component regulatory system (CheY-like protein) [NC10 bacterium 'Dutch sediment'] Length = 123 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 50/117 (42%), Positives = 80/117 (68%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VEDN+ N K+ RDL+ Y ++ NG AL+ + +PD+I+MDIQL ++SGLE+ Sbjct: 6 ILHVEDNQYNRKIIRDLLSKHNYEIMEAHNGEAALDALARRRPDLILMDIQLPKLSGLEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ D L +IP+IA+T+FA+ GDE + GC AYI+KP +E I++++G Sbjct: 66 TRRIRADPSLAQIPIIAITSFALSGDERTAFEAGCSAYIAKPFRPRDLLEMIQRFLG 122 >gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074] gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ G E L L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255692182|ref|ZP_05415857.1| putative response regulator receiver domain protein [Bacteroides finegoldii DSM 17565] gi|260622047|gb|EEX44918.1| putative response regulator receiver domain protein [Bacteroides finegoldii DSM 17565] Length = 1358 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDN+ ++ +E Y ++ +G E A + PD+II DI + ++ G+ Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPDLIISDIMMPKVDGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++IK + + IPVI +TA + + G ++Y+SKP + + M I+K I + Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224 >gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 232 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ ++ G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185] gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185] Length = 233 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1331 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHTDFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium] Length = 220 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED++ R + +GY +G EA ++ ++I+DI L ++ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ + + + P++ +TA + ++ R + Y++KP + I ++ ++ + Sbjct: 61 GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L I G Sbjct: 1 MPTILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 61 FQVCKAIREEN--KKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|50084005|ref|YP_045515.1| component of chemotactic signal transduction system [Acinetobacter sp. ADP1] gi|49529981|emb|CAG67693.1| component of chemotactic signal transduction system [Acinetobacter sp. ADP1] Length = 1437 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 66/118 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+V+D+ K+ L+E GY + ++G +ALE +P +I++DI++ ++ G E+ Sbjct: 1310 IMVVDDSVTVRKVTSRLLERQGYDVVTAKDGQDALEQLEHIRPSLILLDIEMPQMDGFEL 1369 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I++ S L +P+I +T+ + E ++ G + Y+ KP + I+ + + Sbjct: 1370 TRYIRQHSILNSLPIIMITSRTGEKYREIAQQLGVDDYMGKPFQEDDLLTKIQNLLAQ 1427 >gi|17228581|ref|NP_485129.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130432|dbj|BAB73043.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 378 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D+ L + +++ GY + NG E + A +P +II D + ++GLE+ Sbjct: 4 ILIIDDDLSIQILLKRILQKQGYQIVTASNGEEGITQALTSRPALIICDWIMPGLNGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +IK D L I +T+ D + G + +I+KPI + ++ + Sbjct: 64 CHRIKTDPNLSTTFFILLTSLDSVADRVKGLDAGADDFITKPIEQNEMQARVRAGLR 120 >gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP [Corynebacterium pseudotuberculosis C231] gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis 1002] gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis I19] Length = 237 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++V+D ++L ++ G+ +G+EALE+A++ KPD I+D+ + + G Sbjct: 8 TKRILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMPGMDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++ + + PV+ +TA G + Y++KP SL + ++ + Sbjct: 68 YELLPKLRAEGL--DGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILR 125 Query: 122 E 122 Sbjct: 126 R 126 >gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 234 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +++IVED+E + R+ + GY G E LE + D++I+DI L + Sbjct: 1 MLGRLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+ + ++P++ ++A + D+ + K G + Y++KP SL I+ + Sbjct: 61 GYSLCQSIR---WVSDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 897 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 69/118 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN N KL L+ G+ + NG EA+ + + +P +I MD+++ + G E Sbjct: 680 RILVVDDNWTNRKLVVKLLNPLGFHVREAENGQEAIAIWEKWEPHLIFMDMRMPVMDGYE 739 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ IK + Q +IA+TA A++ ++ + GC+ ++ KP + ++TI K++G Sbjct: 740 ATQLIKRHLKGQATVIIALTASALQQEKSIVLSAGCDDFVRKPFRVDQLLQTIVKHLG 797 >gi|312114151|ref|YP_004011747.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311219280|gb|ADP70648.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 244 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ + + +G + +G+ + D+I++D+ + GL Sbjct: 6 HILVVDDDRRIRTSLKRFLTDNGMRVTEVADGVAMFAAVEAGRFDLIVLDVMMPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +IPV+ +TA + + D + G + Y+ KP S + I+ + Sbjct: 66 LCRRLR---GTSKIPVVLLTAMSGETDRIIGLEIGADDYVCKPFSPRELLARIRAVLRR 121 >gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] Length = 232 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D+ G + +I KP S + + + Sbjct: 61 GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074] gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074] gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY ++G AL+ + D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ D +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRSDGHT--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 219 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN R+++E +GYI +G EAL A DVII+D+ L +I GLE Sbjct: 2 KILLVEDNLDLNNTIREVLELNGYIVDSAFDGKEALNFAENSSYDVIILDLMLPDIDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+ PVI +TA D+ G + Y++KP + + I+ A Sbjct: 62 VLKTIRSKGIY--TPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAIGRRA 119 >gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 233 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 233 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ L + +G+ +G EA D+IIMD+ + SG+ Sbjct: 12 AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T+ ++ ++ +P+I +TA A G+ + G + Y+SKP + I + Sbjct: 72 EVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ ++ +++ YI +G +A + + D++I+D+ L + G+ Sbjct: 2 RILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEYDLVILDVTLPRLDGIG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++ + E PV+ +TA D+ G + Y+ KP L + ++ + + Sbjct: 62 FCQRWRGKGEA--TPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRRS 119 >gi|182678198|ref|YP_001832344.1| response regulator receiver modulated diguanylate cyclase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634081|gb|ACB94855.1| response regulator receiver modulated diguanylate cyclase [Beijerinckia indica subsp. indica ATCC 9039] Length = 457 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+DN LN+KL + + NG +AL + D++++D+ + + Sbjct: 1 MSARILVVDDNPLNLKLLEARLTAEYFTVTTATNGFDALAICEAGGCDIVLLDVMMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + IK+ I V+ VT+ D + G + +++KPI + ++ Sbjct: 61 GFNVCRHIKQSPNTMHISVVIVTSLDQTADRLAGLEAGADDFLNKPIDEIALIARVRSLA 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 8/119 (6%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V++VED ++ + +E Y + L + PD+ I+ + L + Sbjct: 150 MSKGHVLLVEDRVSTIERVQAALEDL-YPLEIVSDPGLVLSRGENNPPDLCIISLGLADY 208 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEER---IRKGGCEAYISKPISLSIFMET 115 GL + Q++ + + A + D +R G Y+ +P + Sbjct: 209 DGLRLCSQLRTGERTRNS---MLLALVEREDRQRLLTALDLGVNDYLIRPFDNHELIAR 264 >gi|159899218|ref|YP_001545465.1| response regulator receiver modulated metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] gi|159892257|gb|ABX05337.1| response regulator receiver modulated metal dependent phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779] Length = 328 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D ++ R ++E Y R+G+EAL + PD++++D+ + ++ Sbjct: 1 MSEIILVVDDEARSIDTLRRVLERERYTVRIARDGVEALADIQACMPDLVLLDVTMPVMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ E Q +PV +T + G + +I+KP ++ + I+ + Sbjct: 61 GFEVCRRLRDREETQLLPVAMLTGLNDDESRILGLEMGADDFINKPFERTVLLARIRSLL 120 Query: 121 G 121 Sbjct: 121 R 121 >gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 59/117 (50%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ +L +E +G+ + G +AL + D++++D+ L I G E+ Sbjct: 7 LVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVRKSFDLVLLDVMLPGIDGFEVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+++ +++P+I +TA + D + G + Y+ KP S + I+ Sbjct: 67 RQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFKR 123 >gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1526 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ +E+ GY A NG E L+L ++ D+I+MD Q+ + G E Sbjct: 1251 RILLAEDNPVNQKVALRQLESLGYKADVVANGQEVLDLLQKVSYDLILMDCQMPVMDGYE 1310 Query: 64 ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+++++ VIA+TA AM+ D ER + G + Y+SKP+ + + Sbjct: 1311 ATRRLRQQERRSGHRTVVIAITANAMQEDRERCLQAGMDDYLSKPVLKEDLQRLLNHW 1368 Score = 105 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 K+++ V+DN N K+ R T G + + N +A++ RQ + ++D+Q+ Sbjct: 1097 KRLLAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQAVREGRPFPLAVLDMQMP 1156 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ G + + IK D +L E ++ +T+ + R + G AY+ KP+ S E + Sbjct: 1157 EVDGETLGRWIKADPQLAETQLVMMTSLGLGEHSRRAAEIGFAAYLVKPVKQSRLQEALV 1216 Query: 118 KYIGEA 123 +G++ Sbjct: 1217 MALGKS 1222 >gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 228 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+TK+I++ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELTKEIRKSN--PRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 920 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63 +++VEDNE+N ++ +L++ G + +G +A++ + D ++MDIQ+ + G E Sbjct: 555 ILLVEDNEINQQVACELLQGEGVTVVVANSGQQAVDRVLSGERFDAVLMDIQMPGMDGYE 614 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ + ++P+IA+TA AM GD ER G +I KPI + ET+ +Y+ Sbjct: 615 ATQVIRKQPQFSDLPIIAMTANAMAGDRERCLAAGMNDHIGKPIQPKLLFETLGRYV 671 Score = 58.6 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 10/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQE 58 +V++V+DN + ++ + + + E +E +AR ++++ + Sbjct: 406 RVLVVDDNPVVRQILVESLAIFSFCVEALATVEEVIEALGQAIARGEPYGLVVLAGRFGG 465 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGC---EAYISKPISLSIFMET 115 G+ + +I +P + + + + D + G E +++KPI+ +I E Sbjct: 466 KGGVALAGEINRCYPQLTLPKMVLVGASERDDVVAM--AGAQLVELFVTKPITQTILFEG 523 Query: 116 IKKYIG 121 + + +G Sbjct: 524 VLEVLG 529 >gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D +L R G+ ++ NGM+A+EL R+H D+II+D+ + E+ G Sbjct: 1 MYNILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I++ + + PV+ ++A + D + G + Y+ KP S M + + Sbjct: 61 FSTCHEIRK---ICDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332531237|ref|ZP_08407150.1| response regulator receiver [Hylemonella gracilis ATCC 19624] gi|332039344|gb|EGI75757.1| response regulator receiver [Hylemonella gracilis ATCC 19624] Length = 247 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L + + G A +G + R D++++D+ L GL Sbjct: 6 RILVVDDDPDIRALLAEYLGGQGLRADCAADGRQMRATLRAAPVDLVVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ DSE +PV+ +TA D + G + Y+ KP + I+ + Sbjct: 66 LLRWLR-DSEWAHVPVLMLTARGDNVDRIIGLEMGADDYLPKPFEPRELVARIRAVLRR 123 >gi|268638179|ref|XP_002649186.1| histidine kinase [Dictyostelium discoideum AX4] gi|256013041|gb|EEU04134.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1732 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57 +KV++ EDN +N KL + L+ G+ ++G +AL+ + K D I+MDIQ+ Sbjct: 1550 QKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMP 1609 Query: 58 EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 +SGLE T I+E E IP+IAVTA AMKGD+E+ + G + Y++KPI+ + E Sbjct: 1610 VLSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1669 Query: 116 IKKYI 120 I I Sbjct: 1670 INTQI 1674 >gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697] Length = 1357 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN + + + + Y L+ NG EAL + ++ + +I+ D+ + + GL++ Sbjct: 1113 ILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDGLQL 1171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 KQIK++ IPVI ++A ++ + G + YI KP S+ + IK Sbjct: 1172 CKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFR 1228 >gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W] gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W] Length = 233 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E+ +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|165932901|ref|YP_001649690.1| response regulator PleD [Rickettsia rickettsii str. Iowa] gi|165907988|gb|ABY72284.1| GGDEF family protein [Rickettsia rickettsii str. Iowa] Length = 450 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D+I++D+ + EI G Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 FEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 66.7 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQTKNIKQMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270 >gi|220927155|ref|YP_002502457.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium nodulans ORS 2060] gi|219951762|gb|ACL62154.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium nodulans ORS 2060] Length = 457 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D N+KL + + + NG++A+ + + D++++D + + Sbjct: 1 MSARVLIVDDLFPNLKLLETKLSLEYFDVVSAMNGLDAIAICEKGLCDIVLLDAMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K +PV+ VTA D R G + +++KPI + + ++ + Sbjct: 61 GFEVCRRLKTTPTTAHLPVVMVTALDQPSDRLRGLDAGADDFLTKPIDDTALLARVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 90.2 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I +D + + S + + +ALE A + DV ++ + + GL + Sbjct: 159 LIADDRRASAGRMAAALGQS-HCVEVVCDPHQALEKATEGSYDVALVSLDFEGFDGLRLC 217 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEE---RIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +PV+ + A GD R G Y+ +PI + + I+ + Sbjct: 218 SQLRSLDRTRTMPVVML---ADAGDRARIMRGLDLGVHDYLVRPIDRNELVARIRTQVRR 274 >gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 1331 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1202 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN +NM L ++L++ G G EALE + D+++MD+Q+ E+ G E Sbjct: 1079 RVLLAEDNAINMHLAKELLKKRGNSVTGVSTGKEALEALAKESFDLVLMDVQMPEMDGEE 1138 Query: 64 ITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIKKY 119 T++I+ +P++A+TA+A++GD ER G + Y+SKPI++ + I + Sbjct: 1139 ATRRIRAGEAGDPSVPIVALTAYALEGDRERFLAAGMDDYLSKPINMEELDRVLARIDQA 1198 Query: 120 IGEA 123 E+ Sbjct: 1199 -RES 1201 >gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 228 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D ++ + + +GY +G EALE+ +++ D+II DI + + Sbjct: 1 MAKRILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQKYSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ E P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLIGEV--QYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] Length = 246 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D +L + +G+ L +G EAL+ D+ ++D+ L ++ G Sbjct: 9 ATVLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGF 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++E E+PV+ +TA D+ + G + YI+KP SL + I+ + Sbjct: 69 TILRKLRERD--AELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRR 126 >gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQRIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + P+V+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PNVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|146275719|ref|YP_001165879.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] gi|145322410|gb|ABP64353.1| GAF sensor hybrid histidine kinase [Novosphingobium aromaticivorans DSM 12444] Length = 1782 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +++IV+D+ N+ ++E+ + G+E + + DV ++DI + ++ G Sbjct: 1647 RILIVDDDIRNIYSLTSVLESHDVEVVHAEGGVEGIRILESTPGIDVALIDIMMPDMDGY 1706 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +QI+ + IP++AVTA AMKGD ++ G YISKP+ + + + ++ +IG Sbjct: 1707 ETMRQIRATPAIASIPLVAVTAKAMKGDRQKCLDAGASDYISKPVDIDLLLALLRVWIGR 1766 Query: 123 A 123 + Sbjct: 1767 S 1767 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 VMIVED+ + DL G + + G + + R+ KP I +D+ L +I G + Sbjct: 1503 VMIVEDDPTFATILIDLAHQCGLKGVISSAGSGTVAMVRKLKPSAITLDLGLSDIDGFVL 1562 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++ + + +PV ++ G I KP S + + Sbjct: 1563 LDLLRNEPDTSSVPVHVISGADQAAH---ALTLGAAGVIEKPASREELQALFESIADRS 1618 >gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++I+ED + + +E GY NG LE A D+I++D+ L E+ G Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++++ ++ P+I +TA D G + YI+KP ++ + ++ + Sbjct: 63 FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 227 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +VED+ + ++ GY N + +L + PD+ I+DI L + Sbjct: 1 MTVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I+ +S ++P+I ++A + D+ + G + Y++KP S + +K+ Sbjct: 61 GYEFCKKIRNES---DVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLF 117 Query: 121 GEA 123 + Sbjct: 118 KRS 120 >gi|260063103|ref|YP_003196183.1| two-component system, transcriptional regulatory protein [Robiginitalea biformata HTCC2501] gi|88784672|gb|EAR15842.1| two-component system, transcriptional regulatory protein [Robiginitalea biformata HTCC2501] Length = 240 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + + +NGME E ++ DV I+D+ + G Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNDFDVTLAKNGMEGFEKFKKEPFDVCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E ++ IP+I +TA MK D + K G + Y++KP + + +K + Sbjct: 66 TLAKEIREKND--HIPIIFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLVKLKAILQR 123 >gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] Length = 1113 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 777 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 836 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 837 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 891 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 634 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 693 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 694 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 747 >gi|227892745|ref|ZP_04010550.1| two component response regulator [Lactobacillus ultunensis DSM 16047] gi|227865386|gb|EEJ72807.1| two component response regulator [Lactobacillus ultunensis DSM 16047] Length = 221 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +++ ++ +GY NG++A+E A++ DVII+DI + + G+ Sbjct: 2 RILVAEDEPQLLRVLTAAMKHAGYDVDPVDNGLKAVEHAKESSYDVIILDIMMPVMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I++ + + V+ +TA A D G + YI+KP SL + ++ A Sbjct: 62 ALKEIRKSGD--KTYVLMLTAKAEVDDRVTGLDSGADDYITKPFSLKELLARLRSKERRA 119 >gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42] Length = 1137 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56 + +++VED+ N+ ++E +G RNG EALE + D+++MDI + Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G +I+ E + +P+IA+TA AMK D+E+ G YI+KP+ + + + Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131 Query: 117 KKYIGE 122 + ++ + Sbjct: 1132 RVWMPK 1137 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED+ ++ DL G+ + G + L A ++ P +++D+ L + SGL Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAALEYGPSAVVLDMNLPDFSGLG 804 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + Q+K + + IPV V+ + + + G Y KP+ + + Sbjct: 805 VLDQLKRNPATRHIPVHVVS---VADYMQEAMERGAIGYALKPVKREELEQAL 854 Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 51/95 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V++VED+ + L+ T G + +AL+L + D ++MD+ L +++G Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLLKGSTFDCVVMDLHLPDLNG 924 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 E+ +Q+ E E+ PVI T + DEE+ + Sbjct: 925 YELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959 >gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H] gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea 34H] Length = 240 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++++S IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQNSN--NIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRR 123 >gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1117 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N ++ L+ G+ +G EALE R DV++MD+Q+ E+ GLE Sbjct: 869 RILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGLE 928 Query: 64 ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ ++P++A+TA AM+GD++ G + YISKPI E + KY Sbjct: 929 ATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 985 Score = 81.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58 +V++V+DN +N + + G + + A +V ++D Q+ Sbjct: 722 RVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPV 781 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ + I L ++ ++ M D+ + +A++ KP+ S ++TI + Sbjct: 782 VTGSEMVRMIHAIPMLAGTRIVVTSSQGMPADQNDGQPA-IDAFLHKPLRQSTLLDTIGR 840 Query: 119 YIG 121 +G Sbjct: 841 VLG 843 >gi|150017343|ref|YP_001309597.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903808|gb|ABR34641.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 219 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++VED + Y L+ NG EAL + K D++++D+ L I G Sbjct: 1 METILVVEDELSIRSFICINLRKKKYEVLEAENGEEALSIFNNRKIDIVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I++ S Q + +I +TA + + D + G + Y+ KP S+ I Sbjct: 61 FEVCQKIRDIS--QSVGIIMLTARSQEEDRVKGLVEGADDYLLKPFSMVELEARIISLAR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + + G+ G LE A Q D++++D+ L I G E Sbjct: 2 HILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVMLPGIDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K++++ S+ +PV+ +TA D + G + Y++KP + I+ + Sbjct: 62 ILKRLRQRSK---VPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRR 117 >gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 899 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ ED+ N+ L ++ + Y NG EALE ++H D+I+MDIQ+ E+ GL Sbjct: 773 TILLAEDSPDNVLLVERFLKKTAYRLDVVGNGREALESVKKHHYDLILMDIQMPEMDGLS 832 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ ++ PV+A+TA A + D E + GC+ +++KP ++TI+++ Sbjct: 833 ATRTLRSWEREQGTPRTPVLALTAHAFREDREASIEAGCDGHLTKPFKKDELLKTIQRH 891 >gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 232 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ + ++G EALE + D++++D+ L +IS Sbjct: 1 MASNILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ K+I+E S +PV+ V+A + D+ G + YI+KP S+ +K I Sbjct: 61 GMDFLKKIREKS---HVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ + G+ +G AL A +P VI++D+ + + GL Sbjct: 8 RVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVMMPGMDGLA 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++KE E ++I VI +TA D G + Y++KP S + I+ + Sbjct: 68 VCRRLKE--EGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLR 123 >gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae ATCC 10712] Length = 1785 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH +++MDI + E+ G Sbjct: 1665 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1724 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1725 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEEWMRG 1784 Query: 123 A 123 A Sbjct: 1785 A 1785 >gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G +ALE ++ D++++D+ L + G Sbjct: 1 MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLR---VRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 249 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + +E G ++G EAL+ RQ +PD++++DI L ++ G+++ Sbjct: 22 VLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDGVDV 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+ DS ++PVI VTA A D+ + G + Y+ KP + + ++ + Sbjct: 82 LRMIRNDS---DVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 136 >gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 232 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 V++V+D ++ R + GY + +G AL+ + KPDV+++D+ L ++ G Sbjct: 6 TATVLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ +P+I ++A D+ + G + Y++KP + + ++ + Sbjct: 66 TEVIAGLR---GWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVR 122 Query: 122 EA 123 + Sbjct: 123 RS 124 >gi|241763478|ref|ZP_04761531.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] gi|241367319|gb|EER61650.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] Length = 376 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 V++V+D N+ L L+ + G +AL +A PD+I++DI + E+ G Sbjct: 19 ATVLVVDDTPENLTLMGSLL-REHFQVKVANQGDKALRIALSGTPPDLILLDIMMPEVDG 77 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K ++IPVI +TA + DE+ G YI+KPIS I + + ++ Sbjct: 78 YEVCRRLKAHPSTRDIPVIFLTARSEPDDEQAGLALGAVDYITKPISPPILLARVNTHL 136 >gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 237 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I+ED E + + + GY Q +G E L D++I+D+ L ++ G + Sbjct: 5 KILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAEDIDLVILDLMLPKMLGED 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ SE +PVI ++A + D+ + G + YI+KP S +E IK + Sbjct: 65 VMKEIRNRSE---VPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRR 120 >gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 226 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E G+ + +G EA+ + +PD+I++D+ L ++ Sbjct: 1 MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G++I K I+ S +P++ +TA D + G + Y++KP Sbjct: 61 GIDICKTIRRSSP---VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 108 >gi|172035205|ref|YP_001801706.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171696659|gb|ACB49640.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 122 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L L+ +G+ +G EALE + PD+II+D+ + +++G Sbjct: 1 MPTILLADDSTAQRELIAGLLTDNGFSVTTAMDGAEALEKLKSLAPDLIILDVVMPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + IK D + + IPVI + + D K G +AYI KP + T+K+ + Sbjct: 61 YQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLLR 120 Query: 122 EA 123 + Sbjct: 121 NS 122 >gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE PDV+I+D+ L +I G E Sbjct: 2 KILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDG-PDVLILDVMLPDIDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED+ +L RD +E + + +G L A + D+I++D+ L + G Sbjct: 1 MKKILIIEDDRKIAELERDYLEINDFQVALAADGDTGLLFAVRDDFDLIVLDLMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I ++I+E +E P+I V+A D+ R G + Y+ KP S + + +K +IG Sbjct: 61 FAICRRIREK---KETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIG 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D++ ++ +E GY + NG+EA++L R H +IIMDI + ++ G+ Sbjct: 3 ILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLIRDHVIHLIIMDIMMPKMDGITA 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I++D+ IP+I ++A + D+ G + Y++KP + + +K + Sbjct: 63 TMKIRQDNM---IPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRR 117 >gi|295086680|emb|CBK68203.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1540 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1254 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1312 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1313 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1367 >gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 249 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 +V+IVED EL ++ +E GY + ++G A+EL R + D++++D+ L Sbjct: 19 RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ IP++ ++A + D + G + Y++KP S+ + Sbjct: 79 PQINGLDICRLLRHQGN--SIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 136 Query: 117 KKYIGE 122 + + Sbjct: 137 RALLRR 142 >gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1432 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 ++++IV+D+ N+ ++ G NG E L++ ++ PD +++MD+ + E+ Sbjct: 1250 RRILIVDDDIRNVFALTHVLGRVGMTVKYAENGREGLDVLHRN-PDVSLVLMDVMMPEMD 1308 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E + I+ L ++P+IA+TA AM GD E+ + G Y+ KP+ + M T+ + Sbjct: 1309 GYETIRAIRGTPRLADLPIIALTAKAMPGDREKALESGANGYVPKPVDVDRLMSTVCDLL 1368 >gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 233 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T] gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 257 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ +L ++ G+ + + D+I++D+ L GL Sbjct: 8 RILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLMLPGEDGLS 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ +IPVI +TA D + G + Y++KP + + I+ + Sbjct: 68 ICRRLRAAEN--QIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRR 124 >gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++T A G E L+ ++ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|1119215|gb|AAA87378.1| pleD [Caulobacter crescentus CB15] Length = 454 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D E N++L + Y +G AL +A + P +I++D+ + + Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARICPTIILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++K+D + IPV+ +TA +GD + + G +++KPI + ++ Sbjct: 61 GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 75.2 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+DNE + + + + + +A +++ D++I++ + GL Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 212 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T ++ + +++PV+A+ +G + + G +S+PI +K I Sbjct: 213 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271 >gi|94986298|ref|YP_605662.1| response regulator receiver/SARP domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94556579|gb|ABF46493.1| response regulator receiver and SARP domain protein [Deinococcus geothermalis DSM 11300] Length = 344 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ +KL ++ +GY + + EAL+L + PD++I D+ + ++G Sbjct: 1 MPRILVVDDDAAILKLISVILARAGYEVRTSSHPNEALDLLQVFTPDLVISDVVMPYMTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE ++++ +L +P I +++ A + D R G + Y+ KP + + + Sbjct: 61 LEFLERVRNHEKLSALPFILLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTTAVGARLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|134291928|ref|YP_001115697.1| two component AraC family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135117|gb|ABO59442.1| two component transcriptional regulator, AraC family [Burkholderia vietnamiensis G4] Length = 274 Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++L +++ ++ +G++A A+ PD+I+MD+++ + G Sbjct: 20 AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAIVPDLILMDVRMPRMDGF 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + + Q IPVI +TA D + G YI KP + + I+ ++ Sbjct: 80 AACRLLASTPDTQNIPVIILTAAGDLDDRIAGLETGALDYIVKPFEPAEVIARIRNHLKR 139 Query: 123 A 123 A Sbjct: 140 A 140 >gi|253566417|ref|ZP_04843870.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|265767277|ref|ZP_06094943.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|251944589|gb|EES85064.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|263252582|gb|EEZ24094.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|301165286|emb|CBW24857.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1329 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + R + T Y L NG+EAL + H ++++ D+ + ++ G E+ Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLDNHYVNLVVSDVMMPQMDGFEL 1143 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IK D IPV+ +TA + + G +AYI KP S+ + I I Sbjct: 1144 CKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLI 1199 >gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 222 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRR 117 >gi|60683701|ref|YP_213845.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|60495135|emb|CAH09956.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1329 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + R + T Y L NG+EAL + H ++++ D+ + ++ G E+ Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLDNHYVNLVVSDVMMPQMDGFEL 1143 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IK D IPV+ +TA + + G +AYI KP S+ + I I Sbjct: 1144 CKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLI 1199 >gi|53715770|ref|YP_101762.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|52218635|dbj|BAD51228.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] Length = 1329 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + R + T Y L NG+EAL + H ++++ D+ + ++ G E+ Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLDNHYVNLVVSDVMMPQMDGFEL 1143 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IK D IPV+ +TA + + G +AYI KP S+ + I I Sbjct: 1144 CKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLI 1199 >gi|332140189|ref|YP_004425927.1| two-component system response regulator (hybrid family) protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550211|gb|AEA96929.1| two-component system response regulator (hybrid family) protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 358 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ + ++ Y +G AL++ +Q PD+I++DI + + G E+ Sbjct: 13 ILVVDDEPANIDILLGILGPF-YDVKVAPSGAIALKITQQFTPDLILLDIMMPGMDGFEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +Q+K D L IPVI VTA + +EE+ + G YI+KP+S SI + +K + Sbjct: 72 CRQLKSDKLLSRIPVIFVTALSQGENEEKGFELGAVDYITKPVSPSIALARVKTH 126 >gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED+ +L RD +E + + G E L+ A H D+II+DI L G Sbjct: 1 MKKILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+I+ + P++ V+A D+ R G + Y++KP S + + ++ +I Sbjct: 61 FEICKEIR---LTKNTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 227 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264] gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1331 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLDHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGI--DAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|117926618|ref|YP_867235.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610374|gb|ABK45829.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 800 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N ++ + G+ ++G++AL L ++ D+I+MD+++ ++ GLE Sbjct: 676 ILVAEDNLVNQQIAAGYLTRLGHRYQFAKDGIQALNLVQKGGFDLILMDVRMPDMDGLEA 735 Query: 65 TKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ + +IP++A+TA + D + R+ G + ++ KP+ LS + ++ ++ Sbjct: 736 TRHIRALPKPWCDIPIVALTANVFEQDRQNCREAGMDGFLPKPLDLSQLEQALRTHL 792 >gi|313204586|ref|YP_004043243.1| two component transcriptional regulator, arac family [Paludibacter propionicigenes WB4] gi|312443902|gb|ADQ80258.1| two component transcriptional regulator, AraC family [Paludibacter propionicigenes WB4] Length = 1140 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+DNE + + Y L+ +G A +L + PD++I D+ + + G E+ Sbjct: 893 LIVDDNEDFREFISSMF-IENYRILKAEDGKIAYQLILEKMPDLVISDVMMPNMDGFELC 951 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + IP+I +TA + ++ + G E YI KP ++ + +KK + Sbjct: 952 RLMKQDIRISHIPIILLTAKDGEENKYHGLESGAEDYIPKPFNMEMLSLKVKKIVDR 1008 >gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + LEL R+ +PD++++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|262197751|ref|YP_003268960.1| histidine kinase [Haliangium ochraceum DSM 14365] gi|262081098|gb|ACY17067.1| histidine kinase [Haliangium ochraceum DSM 14365] Length = 678 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN ++ ++ + +++ G +G+EALE A + + D+I+MD Q+ + G+ Sbjct: 559 ARVLLVEDNMVSRRIAQRMLQKVGCDVTLAGHGVEALERAAEARFDIILMDCQMPVMDGI 618 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+++++ PVIA+TA A + +R + G + Y+ KP+ I +Y+ Sbjct: 619 TATRELRKREHEHHTPVIALTADAHEDSRKRCLEAGMDDYLRKPVGKDSLCRAIDRYL 676 >gi|196231317|ref|ZP_03130176.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196224653|gb|EDY19164.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 127 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 71/120 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++ EDN N L L+E +GY + +NG EAL LA +PD+++MD+Q+ E+ Sbjct: 1 MSAKILLAEDNAANRYLETFLLEKAGYTVIHAQNGAEALRLALADQPDLVLMDLQMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E ++I + L E P++AVT+FAM D E+ + G YI KPI F I +++ Sbjct: 61 GYESARRIHAEPRLAETPIVAVTSFAMTRDREKALQFGFAGYIEKPIRPQTFAAEISQFL 120 >gi|167764205|ref|ZP_02436332.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183] gi|167698321|gb|EDS14900.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183] Length = 1317 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + +L D++ Y TR+G+EAL + PD+II DI + + GL + Sbjct: 1071 VLVVEDEKNICELLCDILFE--YTVRVTRDGIEALSEIEHNHPDIIISDIMMPNMDGLTL 1128 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K + + IP+I V+A A D+ K G +AYI+KP + TI+ + Sbjct: 1129 INKLKSELKTSYIPIIGVSAKASVEDQINAFKHGADAYITKPFHPKQIISTIENLLSR 1186 >gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|218778401|ref|YP_002429719.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] gi|218759785|gb|ACL02251.1| response regulator receiver modulated diguanylate cyclase [Desulfatibacillum alkenivorans AK-01] Length = 319 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 +++IV+D N+K+ +D + Y + + G +ALE AR +H PD+I++DI + E+ G Sbjct: 6 RILIVDDERQNIKVLKDFLRDD-YKIMAAKTGEQALEAARSEHPPDLILLDIVMPEMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + +KED + IP+I VT DE + + G YI+KP I IK +I Sbjct: 65 DLCRILKEDEKTMHIPIIFVTGLGSTNDEAKGFELGAVDYITKPFRPVIVKARIKTHI 122 >gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ A G ALE ++ D++++D+ L +SG Sbjct: 1 MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCRSLRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|312131429|ref|YP_003998769.1| transcriptional regulator, crp/fnr family [Leadbetterella byssophila DSM 17132] gi|311907975|gb|ADQ18416.1| transcriptional regulator, Crp/Fnr family [Leadbetterella byssophila DSM 17132] Length = 345 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN+ + +++E G+ + NG E L+LAR+ PD+I+ DI + + G Sbjct: 2 RILLIEDNQEIRENICEILELDGFDVITAANGKEGLDLARESVPDLIVCDIMMPVMDGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ + +IP I +TA A + D + + G + YI+KP + I+ + Sbjct: 62 VLYFLSKEPKTADIPFIFLTAKAERLDFRKGMEMGADDYITKPFEDVELINAIRSRL 118 >gi|307824890|ref|ZP_07655112.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307733937|gb|EFO04792.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 860 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+IV+D N + DL+ G+ ++ +G+EALELA+ PD+I+MDI + ++ G Sbjct: 655 RKVLIVDDVASNRAVLVDLLSPLGFGIIEACDGIEALELAQAAIPDLILMDIVMPKMDGE 714 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+T +++ L ++P+IA++A A DE + + G A++ KP+ + + + Sbjct: 715 EVTHLLRQLPALAQVPIIALSASASNADETKCLQAGANAFLPKPVDQDELLAQMAALM 772 >gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + +++ A G E L+ ++ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|298485836|ref|ZP_07003914.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159660|gb|EFI00703.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 705 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G L + PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED R + Y +G EAL ++ D++++DI L +++G+ + Sbjct: 3 ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKVNGIAV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K ++E S P++ +TA D+ G + Y++KP S I+ Sbjct: 63 CKALREKS--SSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRR 118 >gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] Length = 1406 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60 +KV+IV+D+ N+ ++E G L NG E +E+ QH D+ ++MDI + E+ Sbjct: 1285 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHD-DLSVVLMDIMMPEMD 1343 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1344 GYATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWM 1403 Query: 121 G 121 Sbjct: 1404 R 1404 >gi|284037861|ref|YP_003387791.1| histidine kinase [Spirosoma linguale DSM 74] gi|283817154|gb|ADB38992.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1311 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + + S Y L RNG E E R PDV+I DI + ++ G + Sbjct: 1067 ILVVEDNIELRDFIANELSQS-YRVLTARNGQEGWEQVRSELPDVVISDIMMPDLDGYAL 1125 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+Q+K ++ I VI +TA A + G + Y++KP S+S + I + Sbjct: 1126 TRQLKTNTLTNHIAVILLTARASQESRMNGLMQGADDYLTKPFSISELKQRICNLLTR 1183 >gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|150866454|ref|XP_001386063.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054] gi|149387710|gb|ABN68034.2| histidine kinase osmosensor [Scheffersomyces stipitis CBS 6054] Length = 1118 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ EDN +N KL ++E G+ NG+EA E R+ K DV++MD+Q+ + G Sbjct: 864 SYKILLAEDNLVNQKLAVRILEKQGHQVEVVENGLEAYEAIRKKKYDVVLMDVQMPVMGG 923 Query: 62 LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 E T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M Sbjct: 924 FEATEKIRQWEKKSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 983 Query: 114 ETIKKYI 120 +TI K I Sbjct: 984 QTINKCI 990 >gi|126658801|ref|ZP_01729945.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126619899|gb|EAZ90624.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 594 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ +GY +G AL A+ PD+I++DI++ +I G ++ Sbjct: 13 ILIVDDKPPNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMPPDIILLDIKMPDIDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K+ E EIPVI ++A D+ + + G YI KP + ++ Sbjct: 73 CQELKQFPETAEIPVIFLSALQDVEDKVKAFEAGGVDYIIKPFQFEEVRARVSLHL 128 >gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] Length = 225 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K K+++V+D ++ +E G+ NG+E ++ A+ KP +I+MD+ + ++ Sbjct: 1 MKHYKILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKAKVFKPHLILMDVMMPQM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E ++++ ++ ++ ++A + G YI KPI I + +K Sbjct: 61 DGVEACGELRKLDAFKDTLIVFLSARGEDFSQLAAYDAGANDYIVKPIKPKILVSKLKAL 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 245 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGIGA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + + GY +G EALE + D+I++DI + ++G+E Sbjct: 5 RILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + ++I++ +P+I +TA + D+ G Y+SKP ++ + I+ Y Sbjct: 65 VCRRIRQ---FSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVY 117 >gi|322417782|ref|YP_004197005.1| response regulator receiver protein [Geobacter sp. M18] gi|320124169|gb|ADW11729.1| response regulator receiver protein [Geobacter sp. M18] Length = 121 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++ V+D + +++ GY R+G EALE+A + +PD+I++D+ + G Sbjct: 1 MKTILAVDDEPNILMSIEFILQMEGYQVHTARDGDEALEVAERVRPDLILLDVNMPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + ++E +L VI +TA + ++ + G + Y++KP + + ++ + Sbjct: 61 YEVCRILRERRDLAATKVILLTAKGQALERKKGIEMGADDYVTKPFATEELLGAVRAQL 119 >gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGIT--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|219851955|ref|YP_002466387.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546214|gb|ACL16664.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 576 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 66/117 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IVED+ + R ++E GY NG +AL+L + +PD++I D+ + ++G + Sbjct: 13 KVVIVEDSPTQQEYLRYILEKHGYTVFAATNGQQALDLIGEVRPDLLISDVIMPVMNGYD 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + IK D QEIPVI +TA + D + G + +I+KP + + I++ + Sbjct: 73 LCRAIKSDPASQEIPVILLTALSDTKDVALALQSGADNFITKPYNEEYLILRIRQIL 129 >gi|320158700|ref|YP_004191078.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] gi|319934012|gb|ADV88875.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O] Length = 1370 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 74/119 (62%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++E G + R+G+E+L+ +++ DV++MDI + ++ G Sbjct: 1251 KKVLLVDDDMRNVFALSSILEDKGMDIVIARDGVESLDKLKENPDIDVVLMDIMMPKMDG 1310 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I++ +++PVIA+TA AMKGD + + G Y++KP++ + ++ ++ Sbjct: 1311 YEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLLSMLRVWL 1369 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I+ED+ + RD G+ + G L A+ +KP II+DI L I G Sbjct: 983 RTLLIIEDDRAFASVMRDFGRERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGW 1042 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + +++KE+ E + IPV ++A D + G Y++KP+ + + Sbjct: 1043 TVMERLKENPETRHIPVHFMSANDANLD---ALRMGAIGYLTKPVDMKKLEKA 1092 Score = 91.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ + + R LI + G +ALE ++ D +++D+ L++++G Sbjct: 1105 KRLLVVEDDAIQQESIRQLIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGF 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++I+ +P+I T + +EER E+ I K + S ++ Sbjct: 1165 ELLERIRRSETAARVPIIVYTGRELSKEEERELNRYAESIIIKGVKSPERLLD 1217 >gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED+ KL +D +E + L +G EAL L ++ + D+I++D+ L + S Sbjct: 1 MQKRILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLMLPKFS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I K+++E S L PV+ ++A D+ G + YISKPIS+ + I Sbjct: 61 GMDILKKVREKSLL---PVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAI 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++I+ED + R +E +GY +G+E +E R+ PD++++D+ L +I Sbjct: 1 MAKTILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRRCDPDLVLLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++++S P+I +TA + + + YI KP S+ + + I+ + Sbjct: 61 GFAVCEILRKESRT---PIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|253571534|ref|ZP_04848940.1| two-component system sensor histidine kinase/response [Bacteroides sp. 1_1_6] gi|251838742|gb|EES66827.1| two-component system sensor histidine kinase/response [Bacteroides sp. 1_1_6] Length = 1353 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN + + + + L+ NG EALE + ++ DVI+ D+ + + G++ Sbjct: 1104 TILIVEDNNEIRRYLNNGLADL-FNTLEAGNGEEALEKLKDNEVDVIVTDVMMPVMDGIK 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A D+ + G + YI KP SL+I I+ + Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMR 1220 >gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + G+ +G+EA L + K ++++D+ L ++GLE Sbjct: 2 RILLVEDHPELSHWLQKALTHVGFAVDVANDGIEADHLLQHEKYALVVLDVALPRLNGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + +PV+ +TA D + G + Y++KP L I+ + + Sbjct: 62 LLARLRKRGQT--LPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLRRS 119 >gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|167753811|ref|ZP_02425938.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216] gi|167658436|gb|EDS02566.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216] Length = 225 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 2/124 (1%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++V+D E ++ + +E GY + +AL + + ++++D+ + EI Sbjct: 1 MGKYKILVVDDEESLCEILKFNLELEGYEVDVAYSAEQALAM-HPERYSLLLLDVMMGEI 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ + +K E +P+I TA + D G + YISKP S+ ++ Sbjct: 60 SGFKMARMLKSSPETAAVPIIFCTAKDTEDDTVAGLNLGADDYISKPFSMREVTARVRSV 119 Query: 120 IGEA 123 + + Sbjct: 120 LRRS 123 >gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ R+ +E G + +G L+ A + DV+++D+ L GLE+ Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ S ++PVI +TA + D + G + Y++KP S + I+ + A Sbjct: 70 RELRSRS---DVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRA 124 >gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + ++ G + ++G++AL L H +IIMDI + ++ G++ Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + Y++KP ++ + +K + Sbjct: 65 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L] gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|34580736|ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia sibirica 246] gi|28262121|gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia sibirica 246] Length = 450 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D ELN+KL + Y L +G EAL + ++ K D+I++D+ + E+ G Sbjct: 1 MTTILVVDDIELNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 67.8 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270 >gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + +E G+ A NG A E Q K D++++D+ L + G+E Sbjct: 6 RVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLPGMDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++E + +P+I +TA D G + Y++KP ++ + + + Sbjct: 66 ICRRVRE---ISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRR 121 >gi|294054186|ref|YP_003547844.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293613519|gb|ADE53674.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 380 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 63/117 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D N++L +++ G + NG EAL ++R+ +P +I++DI + + GL Sbjct: 17 RILIVDDETKNLQLVGEILRRVGMPFIFAINGEEALTVSREQQPALILLDIMMPGVDGLT 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + KQ+KED + IPVI +TA D G YI KP + ++ ++ Sbjct: 77 VCKQLKEDPQTAHIPVIFLTAATELTDVVSGFAAGGVDYIKKPFIKEELLARVRTHL 133 >gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 918 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 65/117 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN N ++ +++ G NG +AL+ + DV++MD+Q+ + GL Sbjct: 671 RVLLVEDNAFNQQVMGEMLRDVGLQFDLAENGQDALDQLARSHYDVVLMDLQMPVMDGLT 730 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ + Q +PVIA+TA + D++R + G ++SKP+ + ++I Sbjct: 731 ACERLRSNPAYQNMPVIALTANVDQSDKDRCIQAGMSDHLSKPVVPEQLYSALLRWI 787 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M V++V+DN +N+ L L+ G + + M+A+ + PD++++D + + Sbjct: 1 MQFTVLVVDDNAINLSLIAQLLLKIDGVSPVSFTDAMQAIIWCESNAPDLLLVDYMMPVL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE K+ + +PVI VTA + + R + +I+KP+ F ++ Sbjct: 61 DGLEFIKRFRALPGKMMVPVIMVTAAIEREVKLRALELHANDFINKPLDTVEFTARVRNM 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] Length = 242 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ ++ + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1356 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 74/118 (62%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+DNE N + ++E + + + NG EA++ A+ H D+I+MD+Q+ + G+ Sbjct: 1111 KKILVVDDNEFNRLVATTILEQNEMLTITANNGEEAIQAAKDHSLDLILMDVQMPVMDGM 1170 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I++D + +IP+IA+TAFAMKGD E+ G + +++KP + I + + Sbjct: 1171 MATKVIRDDLQ-SKIPIIALTAFAMKGDREKYLSHGMDDFLAKPFQEKDLLNMISRLL 1227 >gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 336 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SGY L +G AL+ ARQ PD++++D + + G E+ Sbjct: 18 VLIVDDVPDNLAVLHDALDESGYTVLVATSGEAALQRARQAVPDIVLLDAMMPGMDGFEV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121 +++K E IP+I +T + G Y++KPI M + ++ Sbjct: 78 ARRLKAMPETAHIPIIFMTGLTETEHLVAALQAGGVDYVTKPIKPKEVMARMGVHLQGAR 137 Query: 122 EA 123 A Sbjct: 138 RA 139 >gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED + + L++ G+ +G AL+ D+I++D+ L +SG Sbjct: 1 MTSVLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ +PVI VTA + D+ + G + Y++KP + I+ + Sbjct: 61 TEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I++D+ +L D + T G NG + A +H D++I+D+ L ++G Sbjct: 1 MEKILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQAVEH-YDLVILDVMLPGMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +Q+++ SE +PV+ +TA D + G + Y+ KP + + I+ Sbjct: 60 FDVLRQVRQSSE---VPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED D + GY R+G+ A R+ D+I++D+ L G Sbjct: 1 MIRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P++ +TA A + ++ + G + Y++KP IK + Sbjct: 61 LEVCRELRRAGL--KTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 237 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + + ++ GY + NG +AL+ A D I++D+ L +++G Sbjct: 1 MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +++++ + P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 LEIARRVRQS---KATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] Length = 242 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++ +E G+ NG EALE+ + + I+D+ + ++ G+E+ Sbjct: 16 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E L P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREKYSL---PIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 3/113 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ KL ++ Y L NG A+ A H PD++++D+ L ++ G+EI Sbjct: 6 ILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGLPDMDGVEI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++I+ +P+I ++A + D+ G + Y++KP S+ + ++ Sbjct: 66 IRKIRA---WSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLR 115 >gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 245 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGIGA--PVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|91774040|ref|YP_566732.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713055|gb|ABE52982.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 492 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D LN++L + Y + G+E LE D+I++DI + ++SG E Sbjct: 8 KILVVDDEPLNVELMEIYLSPD-YEIISAYGGVEGLEKVATENVDLILLDIMMPDVSGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K D Q IP+I VTA + K D+ R + G + ++SKP+ ++ + Sbjct: 67 VCESLKADPRYQLIPIIMVTALSGKDDKIRSIEAGADDFLSKPVDRLELATRVRSLLR 124 >gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 982 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN N ++ +I+ G NG EAL+L D+++MD+Q+ + G E Sbjct: 726 RILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATTPYDLVLMDVQMPVMDGFE 785 Query: 64 ITKQIK--EDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ L IPVIA+TA AMKGD + G Y++KPI E + K++ Sbjct: 786 ATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPIFPDALAEMLVKWL 845 Query: 121 GE 122 Sbjct: 846 PR 847 >gi|154247782|ref|YP_001418740.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] gi|154161867|gb|ABS69083.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] Length = 124 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 82/121 (67%), Positives = 106/121 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K VMIVEDNELNMKLF DL+E GY ++TR+G+EA+ELAR H+PD+IIMDIQL EIS Sbjct: 3 MAKTVMIVEDNELNMKLFHDLLEAHGYRTVETRSGVEAVELARAHRPDLIIMDIQLPEIS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T+++K D EL+ IPV+AVTAFAMKGDEERIR GGCEAY+SKPIS++ F++T++++ Sbjct: 63 GLDVTRKLKADPELKAIPVVAVTAFAMKGDEERIRAGGCEAYLSKPISVAKFLQTVRQFA 122 Query: 121 G 121 G Sbjct: 123 G 123 >gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E + +++ GY A G E ++ + D++++D+ L +SG Sbjct: 1 MTRILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++++ S +P+I +TA + D+ + G + Y++KP S + IK + Sbjct: 61 VDVCRELRSRS---SVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300867936|ref|ZP_07112576.1| response regulator receiver modulated serine phosphatase [Oscillatoria sp. PCC 6506] gi|300334073|emb|CBN57754.1| response regulator receiver modulated serine phosphatase [Oscillatoria sp. PCC 6506] Length = 377 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 59/117 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ +L R ++ GY NG + + A+Q +P +II D + ++G+E+ Sbjct: 4 ILVIDDDTAVQELLRRTLKKQGYEVTVASNGEDGITQAQQLRPALIICDWIMPRLTGIEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++K + +L +T+ D + G + +ISKPI L+ ++ + Sbjct: 64 CRRVKANPDLSTTQFFLLTSLGSVADRVKGLDAGADDFISKPIELNELQARVRAGLR 120 >gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8] gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +L ++ +GY +G+EAL++ + D+II DI + + G E+ Sbjct: 4 ILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIMMPNMDGYEL 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+Q++ +IP+I VTA D++ G + Y+ KPI ++ + + + + Sbjct: 64 TRQLRNADF--QIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRS 120 >gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++I+ED + + + +E GY +G E L A D+II+D+ L + Sbjct: 1 MGENILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I++ S IPVI ++A D+ G + Y++KP S+ M I+ + Sbjct: 61 GFSVLKEIRKKS---SIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNAL 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1162 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +K+++ +D+ N+ L+ G + +G EALE +H +++MDI + E+ G Sbjct: 1043 QKILLADDDMRNVFSLSALLGEQGIDVITAADGKEALERLEEHNDIRLVLMDIMMPEMDG 1102 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + +PVIA+TA AM GD E+ G YI+KPI S + ++ ++ Sbjct: 1103 YEAMRRIRAIGRYKSLPVIALTAKAMAGDREKCIAAGASDYIAKPIDSSKLLSLMRVWM 1161 Score = 76.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 21/130 (16%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I+ED+ + RD GY + NG + L AR++ P I++D+ L I G I Sbjct: 780 VLIIEDDISFATILRDFAREKGYKTIVALNGNDGLFFARKYLPAAILLDMTLPLIDGNSI 839 Query: 65 TKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISL-----------S 110 K +K + +LQ I + ++A D+ Y KP+ + Sbjct: 840 LKILKSNEDLQHILIHVISAGEISLQVRDKVEG-------YTQKPLQVTDMESVFTGISD 892 Query: 111 IFMETIKKYI 120 KK + Sbjct: 893 RLQARFKKVL 902 >gi|256424531|ref|YP_003125184.1| Crp/Fnr family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039439|gb|ACU62983.1| transcriptional regulator, Crp/Fnr family [Chitinophaga pinensis DSM 2588] Length = 352 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 69/122 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++++EDN+ + +++E + Y L NG +E+A + PD+I+ DI + + G Sbjct: 1 MKTILLIEDNDDIRENTAEILELANYRVLTAENGKTGVEMALEELPDLIVCDIMMPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ E+++ P I +TA + +GD + + G + YI+KP S + + ++ + Sbjct: 61 YGVLHLLQKHPEVEDTPFIFLTAKSERGDFRKGMEMGADDYITKPFSGTDLLNAVESRLK 120 Query: 122 EA 123 ++ Sbjct: 121 KS 122 >gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + + +++ Y ++ NG E LE + + + I+DI + + Sbjct: 1 MKHTLLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEALKHNDIHLAIVDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL +T +++E + +IPVI +TA D+ G + YI+KP + + + Sbjct: 61 GLTMTMKLRE---VSDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + +D + +GY +G AL+ P++ ++DI L + G Sbjct: 1 MTRIVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATPPELTLLDIMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++ +E + P+I +TA + D + G + Y+ KP S + ++ + Sbjct: 61 IEVLRRAREHTSH---PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + ++ G + ++G++AL L H +IIMDI + ++ G++ Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + Y++KP ++ + +K + Sbjct: 65 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|149277598|ref|ZP_01883739.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149231831|gb|EDM37209.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 1363 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED L R+++ YI + NG AL+ ++ P +II D+ + ++ GLE+ Sbjct: 1108 VLIVEDEPELRFLIRNVL-KEHYIIYEAGNGRAALQFLQKTVPSLIISDVMMPDMDGLEL 1166 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K+ L +IP + ++A + + + G +AYI KP ++ I+K + Sbjct: 1167 CRAVKQTPALAQIPFVILSARGTEDHKTEGYEVGADAYIPKPFQINYLQVRIRKLL 1222 >gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L ++ Y + EAL + D+ I+DI + I G + Sbjct: 3 ILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIMMPHIDGFTV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 63 LQKIRE---TYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRR 117 >gi|27366816|ref|NP_762343.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6] gi|27358383|gb|AAO07333.1|AE016809_95 Signal transduction histidine kinase [Vibrio vulnificus CMCP6] Length = 1370 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 74/119 (62%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++E G + R+G+E+L+ +++ DV++MDI + ++ G Sbjct: 1251 KKVLLVDDDMRNVFALSSILEDKGMDIVIARDGVESLDKLKENPDIDVVLMDIMMPKMDG 1310 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I++ +++PVIA+TA AMKGD + + G Y++KP++ + ++ ++ Sbjct: 1311 YEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLLSMLRVWL 1369 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I+ED+ + RD G+ + G L A+ +KP II+DI L I G Sbjct: 983 RTLLIIEDDRAFASVMRDFGRERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGW 1042 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + +++KE+ E + IPV ++A D + G Y++KP+ + + Sbjct: 1043 TVMERLKENPETRHIPVHFMSANDANLD---ALRMGAIGYLTKPVDMKKLEKA 1092 Score = 91.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ + + R LI + G +ALE ++ D +++D+ L++++G Sbjct: 1105 KRLLVVEDDAIQQESIRQLIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGF 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++I+ +P+I T + +EER E+ I K + S ++ Sbjct: 1165 ELLERIRRSETAARVPIIVYTGRELSKEEERELNRYAESIIIKGVKSPERLLD 1217 >gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] Length = 247 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + G+ +G A+ D +++D+ L I G E Sbjct: 18 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 78 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 134 >gi|83310939|ref|YP_421203.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945780|dbj|BAE50644.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magneticum AMB-1] Length = 393 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 10/129 (7%) Query: 1 ML--------KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVII 51 M+ +++V+D N+ + L++ Y +G +AL++A + PD+I+ Sbjct: 1 MMDASDVIERATILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAMAETSPDLIL 59 Query: 52 MDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 +DI + + G E+ +++K + IPVI +TA A E+ G YI+KPIS I Sbjct: 60 LDIMMPGLDGYEVCRRLKAEPRTHHIPVIFLTAKAEVDAEKTGLDLGAVDYITKPISPPI 119 Query: 112 FMETIKKYI 120 + +K ++ Sbjct: 120 VLARVKTHL 128 >gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1824 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1703 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1762 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + + +++ Sbjct: 1763 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMDQWMR 1822 >gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I ED++ + L + +E + L NG EALE+ ++ + I+DI + +++ Sbjct: 1 MNYKILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIMMPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+TK+I+E + +P++ ++A + D+ G + Y++KP + + +K I Sbjct: 61 GFELTKKIRE---ISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803] gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM 15176] gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM 15176] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEIS 60 +K+V++VED ++ ++ +G+ L+ + ALEL + +P D ++DI L + Sbjct: 1 MKRVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+ D +I +I V+A + D+ R G + YI+KP S+S + ++ Sbjct: 61 GLSLCETIRRDDN--DIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALT 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41] gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L ++ Y + + EAL + D+ I+DI + EI G I Sbjct: 15 ILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIMMPEIDGFTI 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 75 LQKIRE---TYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRR 129 >gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ L + ++ GY G E L+ R +P ++I+D+ L ++SG Sbjct: 1 MLRILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNLPDVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +Q+++++ + V+ +T+ D+ + + G + Y++KP SL ++ + Sbjct: 61 YDLCQQMQKETG---VYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|15614110|ref|NP_242413.1| hypothetical protein BH1547 [Bacillus halodurans C-125] gi|10174164|dbj|BAB05266.1| BH1547 [Bacillus halodurans C-125] Length = 661 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +N+K+ ++ Y +G EA+ + + D+++ D+ + ++SG E Sbjct: 331 RILVVDDEPVNLKVIASILANEAYEVKTVISGEEAIAVLDTKEWDLVVADVMMPKMSGYE 390 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +TK I++ L E+P++ +TA + D E + G Y++KP++L IK Sbjct: 391 LTKNIRQRFTLTELPILLITARSRPEDIENGFRAGANDYLTKPVNLLELRARIKAL 446 >gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1305 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED +N K+ L++ GY A NG+EALE ++ DVI MD+Q+ E+ GLE Sbjct: 1024 RILLVEDIAVNQKIALQLLQRLGYRADVANNGLEALEALQRQVYDVIFMDVQMPEMDGLE 1083 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I++D +L P +IA+TA A D + G YISKP+ L + +++Y Sbjct: 1084 TTQHIRQDLQLSTQPWIIAMTAHARAEDRQACLHIGMNDYISKPLRLETLRQVLEQY 1140 Score = 55.9 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 1/107 (0%) Query: 11 NELNMKLFRDLIETSGYIALQTRNGMEAL-ELARQHKPDVIIMDIQLQEISGLEITKQIK 69 N + ++ G L EL RQ+ D+ I+DI L ++ QI Sbjct: 877 NASLRRSLTLQMQGLGLQVQTADGVGTVLHELHRQNHFDLAILDIDLPGFQPAQLASQIH 936 Query: 70 EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +P++ ++A E + A+++KP+ T+ Sbjct: 937 GIPDHCCLPLVMLSAKGKSALEIKQVSTEFSAFLNKPVRHYQLTNTL 983 >gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 250 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-------KPDVIIMDIQL 56 +++IVED E+ + +E GY AL +G ALEL + + D++++D+ L Sbjct: 20 RILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +ISGL+I + ++ + IP++ ++A A + D + G + Y++KP S+ + Sbjct: 80 PQISGLDICRLLRYHGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + I Sbjct: 138 RALIRR 143 >gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp. subtilis str. 168] gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp. subtilis str. 168] gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ykoG gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis] gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp. subtilis str. 168] gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto BEST195] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED E ++ + +E GY NG E L+ A + ++++D+ L +SGLE Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + PVI +TA D+ G Y++KP + + I+ + + Sbjct: 65 VLRRLRKTD--SQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121 >gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1131 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 4/124 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+E+ + R L+ +GY R G EA+ L R+ +++MD+Q+ + G+E Sbjct: 1005 RILLAEDDEVTIFATRALLTRAGYEVSVARTGHEAVSLLREQDFGLVLMDVQMPGMDGVE 1064 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ D L + IP+IA+TAFAM G++E G + Y++KP+ + I + Sbjct: 1065 ATRIIRSDPGLGDKRSIPIIALTAFAMDGEKEIFLAAGMDGYVAKPVGMKDLTRAIDAVL 1124 Query: 121 -GEA 123 G A Sbjct: 1125 SGRA 1128 >gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 957 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ ED +N +I G+ + NG + L L + + D I+MDIQ+ + G E Sbjct: 832 RVLLAEDEPINALAASRMINRDGHEVIVAENGRQVLNLLEEREFDCILMDIQMPVMDGEE 891 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+ + IP+IA+TA++M GD E+ G Y+SKP + T ++ Sbjct: 892 TTRAIRSSGKAYASIPIIALTAYSMSGDREKFLTAGMNDYLSKPFKIEELRRTFRR 947 >gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63 + +VED+ +L ++++G+ A NG E L+ KP+++++DI L G+ Sbjct: 2 IFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ S +++P+I +TA + D+ G + YI+KP + + +K + + Sbjct: 62 ILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRRS 121 >gi|121593459|ref|YP_985355.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax sp. JS42] gi|120605539|gb|ABM41279.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax sp. JS42] Length = 377 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 V++V+D N+ L L++ Y +G +AL +A+ PD++++DI + I G Sbjct: 20 ATVLVVDDTPDNLTLMAGLLQGL-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDG 78 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K + + IPVI +TA + DE G YI+KPIS SI + + ++ Sbjct: 79 YEVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHL 137 >gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1238 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL+ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E ++P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229 Score = 94.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMIPEMDGSD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + L + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium variabile DSM 44702] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ +++ G+ + +G EA+E AR PD+I++D+ L ++ Sbjct: 1 MAAKILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQHPDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G+++ + ++ + +P++ +TA D + G + Y+ KP Sbjct: 61 GVDVCRAVR---DFSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKE 108 >gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED++ + + +E G+ NG A +L + D++++D+ L I+G Sbjct: 10 MARLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLMLPGING 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ +Q+++ S ++ V+A + D + G + Y+ KP + + + + Sbjct: 70 LDLCRQLRQGSTPPL--ILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M ++ +++V+D + + +G+ N EA + D++I+DI + Sbjct: 1 MSERPHLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNANAIDLVILDIMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL + + I+E EIPVI +TA + + D + G + Y+ KP S + IK Sbjct: 61 EDGLSLCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKV 117 Query: 119 YIGE 122 Sbjct: 118 IFRR 121 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SG+I L +G+ ALE PD+I++D + I G E Sbjct: 11 VLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLDHITPDLILLDAMMPGIDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IK+ + +PV+ +T + R + G Y++KPI + I +I A Sbjct: 71 CRRIKQVRRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIRTA 129 >gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 917 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E N +L + G+ + NG EA+ + Q +P +I MD+++ + G E Sbjct: 710 RILVVDDRESNRQLLVKFLSPLGFEVQEAENGQEAIAIWNQWEPHLIWMDMRMPVMDGYE 769 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T QIK + Q +IA+TA A + + + GC+ ++ KP I E + K++G Sbjct: 770 ATTQIKSYLKGQATVIIALTASAFEEERAVVLSAGCDDFVRKPFEEQILFEKMAKHLG 827 >gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I+ Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + KL ++ GY LQ +G E L + +++ ++++DI + ++ G+ Sbjct: 11 TILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGIH 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 71 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 126 >gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185] gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550] gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W] gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550] gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185] gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|220906815|ref|YP_002482126.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] gi|219863426|gb|ACL43765.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7425] Length = 584 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I++D+ N + + GY +G A+ + KPD+I++D+ + +++G Sbjct: 13 MSSILIIDDDPDNFDVIDTFLAQQGYHLYYASSGRTAIADLDKFKPDLILLDVMMPDMTG 72 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + IK E Q +P+I VTA A K + G + +I KP+ + ++ + Sbjct: 73 IEVCRWIKTMPEWQAVPIIMVTALATKKNLAECFAAGADDFICKPLDSLELIARVRSMLR 132 >gi|167755291|ref|ZP_02427418.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402] gi|167704230|gb|EDS18809.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402] Length = 228 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + +L + + +GY +G A+EL ++ D+I++DI L EI+G Sbjct: 11 MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEING 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ IPVI +TA D + K G E YI KP + + ++ + Sbjct: 71 YELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLR 126 Query: 122 E 122 Sbjct: 127 R 127 >gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] Length = 227 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED E + + GY ++ +G L+LA D+I++D+ L ++ Sbjct: 1 MSRKILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPRLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+++ +P++ +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 GLEVLRRIRKEGN--NVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVAL 118 Query: 121 GE 122 Sbjct: 119 KR 120 >gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 235 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D+ ++ + + G + G EAL L RQ + D++++D L + +G+EI Sbjct: 10 LIVDDDPKLLQFLLEELSQDGIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDFNGIEIC 69 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + PV+ +TA D + G + YI+KP L ++ + + Sbjct: 70 RRLRSSGDT--TPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRS 125 >gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680] gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis MA-4680] Length = 1829 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1709 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1768 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1769 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWMR 1827 >gi|120555598|ref|YP_959949.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120325447|gb|ABM19762.1| integral membrane sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 784 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N L R L+E G + +G A L + H+ DV+ MD + + G E Sbjct: 659 RVLLVEDNPVNRTLTRRLLEKLGCEVMTANDGQAASSLWQWHQFDVVFMDCVMPRMDGYE 718 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+Q++ + +PV+A+TA AM+ DEER R+ G +++++KP++L + +++Y Sbjct: 719 ATRQLRAWETNHGRSRVPVVALTASAMEEDEERCRQAGMDSFVAKPVNLEMLRAVLEQY 777 Score = 80.2 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 5/122 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 ++V++V+ EL+ K+ +++ R+ EAL RQ D I+D + Sbjct: 502 RRVLVVDSYELSRKITLEMLSRYDVHIDAVRSAGEALTALRQAFDAGIPYDATILDGFVP 561 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ + +Q++ + + E+ ++ +++ +GD E R+ G +A++SK + S + + Sbjct: 562 DMDADLLCRQVRSNPQWAEMRLLILSSNPQRGDAEHFRQAGADAFLSKSLRESYLIPILN 621 Query: 118 KY 119 + Sbjct: 622 QL 623 >gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1135 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 70/120 (58%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++ ED+ N KL L+E G+ + NG+EA+E R D+I+MD+Q+ E+ G Sbjct: 818 SRRILLAEDSLANQKLALGLLERWGHRVVVASNGIEAIERYRSESFDLILMDVQMPELDG 877 Query: 62 LEITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T I+E + IP++A+TA A++GD E+ K G + Y+ KPI + I++ Sbjct: 878 NEATMAIREIERRTGEHIPIVAMTAHALQGDREQCLKAGMDDYLMKPIRARQLFQMIEQV 937 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 5/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V+IV+DN+ N ++ +L G +EA + +II D Q+ Sbjct: 675 RVLIVDDNQTNRRILEELTLLWGMRPRIAAGAIEARRELQHAIDQGEPIRLIITDAQMPG 734 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G +T I+ + + ++ +T+ D R ++ G Y+ KP+ S +I Sbjct: 735 EDGFSLTASIRSLENMPAVEILMLTSGDRLEDLSRCQQLGIAGYLIKPVKQSELYNSIVG 794 Query: 119 YIGEA 123 +G+A Sbjct: 795 IMGQA 799 Score = 43.6 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 7/99 (7%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVE + R + +GY + + L A Q +P ++++ + Sbjct: 1 MPRILIVEPRPSFREGLRQTLVDAGYEIET-LDIDQDLPAAIQIRPALVVLGCEA----- 54 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE 100 +E IK +PV+ + G + G + Sbjct: 55 IEFLPLIKSQ-CTPPVPVLLLIKAGELGLILKAVDGAAD 92 >gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+E + +E Y +G EAL++ D+II+DI ++ I G+ Sbjct: 4 KKILVVDDDEDICLTIKQYLELHHYQVETVHSGAEALKMI-SGDVDLIILDIMMEGIDGM 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I++ + P++ V+A ++ D+ + G + YI+KP SL I ++ Sbjct: 63 ELCRMIRDRV---DCPILFVSAKTLEEDKVQALSIGGDDYITKPFSLKELKARIDSHLRR 119 >gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 221 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D D ++ SGY + NG +ALE+ +++P ++I DI + E+ Sbjct: 1 MPLTILIVDDEPGISLSVSDYLQLSGYSVVTAANGKQALEMLNRYQPHLLITDIVMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +Q+++ + +PVI +T + R + GC+ Y+SKP L ++ + Sbjct: 61 GYDLVRQVRQQPAFRLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLL 120 Query: 121 GE 122 Sbjct: 121 DR 122 >gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 220 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED ++ RD + Y +G AL R + D+II+D+ L ++ GL + Sbjct: 3 ILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLMLPKLDGLSV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++++ S+ +P+I TA + D + G + YI KP S + +K + + Sbjct: 63 CREVRKQSQ---VPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRRS 118 >gi|218437187|ref|YP_002375516.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] gi|218169915|gb|ACK68648.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7424] Length = 322 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++++ GY +G +ALE + PD+I++D+ + E++GL++ Sbjct: 18 ILIVDDISKNLQLVVEILDEVGYATTFAISGKQALERVKIAHPDLILLDLMMPEMNGLQV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D+ EIP+I +TA + D + K G Y++KP + +K ++ Sbjct: 78 CEKLKSDANYAEIPIIFLTASDEQEDLLQAFKMGAVDYVTKPFKSGELLARVKTHL 133 >gi|153870044|ref|ZP_01999525.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073489|gb|EDN70474.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 225 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 68/116 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ GY T +G AL+ + PD+I++DIQ+ E++G E+ Sbjct: 20 ILIVDDMPANLQILNQILTEQGYKVRPTVSGKMALKSVQSVIPDLILLDIQMPEMNGYEV 79 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D+++ EIPVI ++A + D+ + G YI+KP + +K ++ Sbjct: 80 CEKLKADNKIAEIPVIFISALSDVFDKVKAFSVGGVDYITKPFQAEEVLARVKTHL 135 >gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1622 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 65/117 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNELN + +L+ +G+I +G AL+ + DV++MD+Q+ + G Sbjct: 1267 VLLVEDNELNQLVAVELLRGAGFIVDVAAHGQAALDCVAHTEYDVVLMDMQMPVMDGETA 1326 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++++ D +P+IA+TA AM+ D R G ++ KPI + + +++ Sbjct: 1327 TRRLRADPRHARLPIIAMTANAMEADRRRCFDAGMNDHVPKPIEPGVLWRALARWVR 1383 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V+IV+DN + +++ + G+ ++ G +AL++ R ++++D ++ Sbjct: 1118 RVLIVDDNHTAAAVLSEMLRSMGFETRESHAGAQALDMLRDAAADGEPYGLLLIDWRMPG 1177 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+E+ ++I E Q ++ VTA+ R+ G E + KP+S S+ +T+ + Sbjct: 1178 MDGIELARRIHELGLDQAPQMLMVTAYGRDEIMPAAREQGIETVLVKPVSASLLYDTLAQ 1237 >gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str. Twist] gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str. Twist] Length = 251 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + K+++V+D L + +GY + NG A+ +PD+IIMD+ L ++ Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG TK+++E PVI ++A D+ G + Y++KP SL + + Sbjct: 85 SGFAATKRLREAGF--RCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAI 142 Query: 120 IGE 122 + Sbjct: 143 LRR 145 >gi|148257503|ref|YP_001242088.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146409676|gb|ABQ38182.1| putative sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Bradyrhizobium sp. BTAi1] Length = 1202 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN R L+E Y +G AL + KPD+++ D+ + I G+ Sbjct: 612 ARILLADDNADMRDYVRRLLEAR-YEVETVGDGEAALAAMARAKPDLVLSDVMMPRIDGM 670 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ +++ D ++ +P+I ++A A + + G + Y+ KP S S + ++ ++ Sbjct: 671 QLLARVRADPKVSTVPIILLSARAGEESRVEGMQAGADDYLIKPFSASELLARVEAHL 728 >gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7] gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ +L D + Y L + + +++ PD+I++D + + G E Sbjct: 7 KVLVVDDDPALRQLLADYLNRHNYDTLLAPDASDLPARIQRYSPDLIVLDRMMPDGDGAE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ E +IPVI +TA D + G + Y+ KP + I+ + Sbjct: 67 ACRRLRQQGE--DIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRR 123 >gi|329896463|ref|ZP_08271541.1| putative two-component response regulatory protein [gamma proteobacterium IMCC3088] gi|328921781|gb|EGG29153.1| putative two-component response regulatory protein [gamma proteobacterium IMCC3088] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + I+ED+ +L D + +G+ +G EAL LA D+ ++D+ L + G Sbjct: 1 MSSIAIIEDDPKIARLLADYLTQAGFDTATAHSGQEALSLATSQHFDLFLLDVMLPDGDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + KQ++ P++ +TA + D + G + YI KP S + +K + Sbjct: 61 FSVCKQLR---LFSSAPILFLTARIAEEDRLLGLELGGDDYIVKPFSPREVVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 248 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ L + G+ G+ A+ A++ PDVI++DI L + GLE Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ L +PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 78 VMRRVR--GHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 >gi|317475905|ref|ZP_07935161.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907938|gb|EFV29636.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1362 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + + + Y NG EA +L + PD++I D+ + E+ GL Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLVISDVMMPEMDGLT 1169 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+++ + +PVI +TA + D + G +AY+ KP + + +TI I Sbjct: 1170 LCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKTIANLI 1226 >gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 982 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN N ++ +I+ G NG EAL+L D+++MD+Q+ + G E Sbjct: 726 RILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLATTPYDLVLMDVQMPVMDGFE 785 Query: 64 ITKQIK--EDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ L IPVIA+TA AMKGD + G Y++KPI E + K++ Sbjct: 786 ATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPIFPDALAEMLVKWL 845 Query: 121 GE 122 Sbjct: 846 PR 847 >gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY ++G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ IP++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAGGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1] gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1] Length = 921 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V+I +D+ N+ + + G L ++NG E L++ HK D+++MDI + + G Sbjct: 800 KTVLICDDDNRNIYALKKALSKEGMKVLVSQNGFECLDMLDLHKEVDIVLMDIMMPGMDG 859 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+++ ++P+IA+TA AMKGD ++ G YISKP+ + + ++ ++ Sbjct: 860 YETMQRIRKNDAFADLPIIALTAKAMKGDRQKCLDAGATDYISKPLKMDQLLSVMRVWL 918 >gi|29346142|ref|NP_809645.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29338037|gb|AAO75839.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] Length = 231 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K V++VED + +D +E +G+ +G E L L + +PDV++ D+ + Sbjct: 1 MSKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G E+ ++I++ ++ PV+ +TA + D + G Y+ KP + + IK Sbjct: 61 KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIK 118 Query: 118 KYIGEA 123 +G+A Sbjct: 119 ALMGKA 124 >gi|150391003|ref|YP_001321052.1| two component, sigma54 specific, Fis family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950865|gb|ABR49393.1| two component, sigma54 specific, transcriptional regulator, Fis family [Alkaliphilus metalliredigens QYMF] Length = 449 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D + + ++T Y + NG E +E ++ +PD++++D+++ + G Sbjct: 1 MNKILIVDDEKNMRWAMKKALKTEDYQVFEAANGQEGVEKFQELQPDLVLLDLKMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE +++K E IPVI +TA K G YISKP + I K + Sbjct: 61 LEALQKMKGIDE--HIPVIMITAHGTTESAVEAMKLGAIDYISKPFDIEELKIVIHKAL 117 >gi|326800045|ref|YP_004317864.1| AraC family transcriptional regulator [Sphingobacterium sp. 21] gi|326550809|gb|ADZ79194.1| two component transcriptional regulator, AraC family [Sphingobacterium sp. 21] Length = 1349 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+ + R + + Y+ NG +A + PD++I D+ + + G+ Sbjct: 1097 KRILVVDDDIDIREFLRRELSPA-YLVNTYANGEDAYKSMLNAVPDLVISDVMMPIMDGM 1155 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+I+E+ +P++ +TA + + G + YI KP ++ + E IK + Sbjct: 1156 ILCKKIRENPLTHHVPIVLLTAKGEDNHQLQGLGLGADLYIVKPFNMDVLTENIKSLLR 1214 >gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A+ AR +PD +I+D+ L ++ GL Sbjct: 21 RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGLA 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ EL ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 81 VLGRLRR--ELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 138 >gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED++ +L +D +E +G+ A G+ LE A + D+I++D+ L G Sbjct: 1 MKKILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++I++ ++EIP++ VTA R G + YI KP S S + + ++ Sbjct: 61 FEICQEIRK---VKEIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMN 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + IK Sbjct: 61 LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARR 117 >gi|150003189|ref|YP_001297933.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|254882475|ref|ZP_05255185.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319640424|ref|ZP_07995146.1| sensor protein [Bacteroides sp. 3_1_40A] gi|149931613|gb|ABR38311.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|254835268|gb|EET15577.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387911|gb|EFV68768.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1386 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L L+ Y L+ NG EALE+ + + D+I+ D+ + E+ G+E Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K E IP+I +TA D + G + YI KP+ LS+ I + Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDHVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253 >gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + ++ Y + NG +AL+ K D+ I+DI L +I G +I Sbjct: 7 ILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPDIDGFQI 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQI++ PVI +TA D+ G + YI KP + + +K + Sbjct: 67 LKQIRQKYTF---PVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 121 >gi|160901173|ref|YP_001566755.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366757|gb|ABX38370.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 342 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED + + S + +G +ALEL KPD++++D+Q+ + G ++ Sbjct: 116 ILVAEDEPEIADILCAYLARSDLRTVHAADGQQALELHHHLKPDLVLLDVQMPRLDGWQV 175 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ + PVI +TA D+ + G + Y+ KP + + + ++ + Sbjct: 176 LSEIRRRG---DTPVIMLTALNQDVDKLIGLRIGADDYVGKPFNAAEVVARVQAVLRR 230 >gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei TW08/27] gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma whipplei TW08/27] Length = 227 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + K+++V+D L + +GY + NG A+ +PD+IIMD+ L ++ Sbjct: 1 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG TK+++E PVI ++A D+ G + Y++KP SL + + Sbjct: 61 SGFAATKRLREAGF--RCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAI 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|17227925|ref|NP_484473.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17129774|dbj|BAB72387.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 276 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED+ + L+ ++ G+ + NG+ ++ A++H PD+II DI + ++ G Sbjct: 7 TILVIEDDTVTRNLYLKGLKIEGFNVIGAENGVVGVQKAQEHLPDIIICDIMMPQMDGYS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++DS IP I +TA M+GD + + G + YI+KP +L ++ I + + Sbjct: 67 VLTILRQDSLTAGIPFIFLTASDMRGDLRKGMELGADDYITKPSTLDELLKAIATRLRK 125 >gi|325109884|ref|YP_004270952.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] gi|324970152|gb|ADY60930.1| response regulator receiver protein [Planctomyces brasiliensis DSM 5305] Length = 153 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 61/118 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +DN+ N +L + Y+ +G L +PD+I++DI + ++SG E Sbjct: 14 RILIADDNQQNRELVEAYLSDEDYVIEMAHDGQHTLAQVESFQPDLILLDIMMPKMSGFE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +Q+K+ Q IPV+ +TA D E+ G + ++SKP++ ++ + Sbjct: 74 VCQQLKQQEATQSIPVLMITALRETADIEKAVDAGADDFLSKPVNRVELKTRVRSLLR 131 >gi|237726839|ref|ZP_04557320.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435365|gb|EEO45442.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1339 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN+ + Y + +NG E +A ++ PD+II DI + E +G+E+ Sbjct: 1086 ILIVEDNDDIRNYIATSFIDN-YRTVTAKNGKEGWSMALKYIPDIIISDIMMPEKNGIEL 1144 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKED IPVI +TA D+E + G ++Y++KP S + I + Sbjct: 1145 CKLIKEDMRTCHIPVILLTAKDSILDKEEGYQSGADSYLTKPFSAKLLSSRINNLL 1200 >gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D + + D+ Y L+ NG +AL+ + D++I+DI + ++ Sbjct: 1 MNGTILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQ-VDLVILDIMMPKMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K ++E + P++ ++A + D+ + G + YI+KP + + ++ ++ Sbjct: 60 GFEFCKVVREQIK---CPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE 58 M K+V+IVED+ L R + GY +G L L Q P D +++D+ L Sbjct: 1 MSTKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL++ ++ + + +P+I ++A + + G + Y++KP S+ + ++ Sbjct: 61 VDGLQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRA 118 Query: 119 YIGEA 123 + A Sbjct: 119 LLRRA 123 >gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALR---TAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|37676593|ref|NP_936989.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] gi|37201136|dbj|BAC96959.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 1381 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 74/119 (62%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++E G + R+G+E+L+ +++ DV++MDI + ++ G Sbjct: 1262 KKVLLVDDDMRNVFALSSILEDKGMDIVIARDGLESLDKLKENPDIDVVLMDIMMPKMDG 1321 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I++ +++PVIA+TA AMKGD + + G Y++KP++ + ++ ++ Sbjct: 1322 YEAMEEIRKQKVYEKLPVIALTAKAMKGDRSKCIEAGASDYLAKPVNTDKLLSMLRVWL 1380 Score = 114 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I+ED+ + RD G+ + G L A+ +KP II+DI L I G Sbjct: 994 RTLLIIEDDRAFASVMRDFGRERGFKCIVAETGETGLHFAQYYKPSAIILDIGLPGIDGW 1053 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + +++KE+ E + IPV ++A D + G Y++KP+ + + Sbjct: 1054 TVMERLKENPETRHIPVHFMSANDANLD---ALRMGAIGYLTKPVDMKKLEKA 1103 Score = 91.0 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ + + R LI + G +ALE ++ D +++D+ L++++G Sbjct: 1116 KRLLVVEDDAIQQESIRQLIGEDDIHIVAVPTGEKALEELESNRYDCMVLDLGLEDMTGF 1175 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++I+ +P+I T + +EER E+ I K + S ++ Sbjct: 1176 ELLERIRRSETAARVPIIVYTGRELSKEEERELNRYAESIIIKGVKSPERLLD 1228 >gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 234 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ +L +E G+ + +G++AL+ Q K D++I+DI + + G ++ Sbjct: 14 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP++ +TA + + G + Y+ KP + +K + Sbjct: 74 CFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128 >gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 245 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D++ + + + GY ++ NG EAL Q+ +I+MDI + E+ G Sbjct: 15 MHTILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQNDIHLILMDIMMPELDG 74 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E +P+I +TA + D+ G + YI+KP + + +K + Sbjct: 75 IRATAKLRE---GSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLR 131 Query: 122 E 122 Sbjct: 132 R 132 >gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L +E +GY G E AR PD++I+D+ L + G Sbjct: 1 MPNILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + ++ DS +P++ +TA D+ + G + Y++KP + + ++ + Sbjct: 61 LQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|320329810|gb|EFW85798.1| sensory box protein/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 705 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G L + PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis BCW-1] Length = 1814 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH +++MDI + E+ G Sbjct: 1694 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1753 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++G Sbjct: 1754 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIQAGASDYVTKPVDTDHLLAVMEQWMG 1812 >gi|241957485|ref|XP_002421462.1| histidine kinase, putative; nuclear response regulator and transcription factor, putative [Candida dubliniensis CD36] gi|223644806|emb|CAX40799.1| histidine kinase, putative [Candida dubliniensis CD36] Length = 1070 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G E Sbjct: 878 KILLAEDNLVNQKLAVRILEKQGHQVEVVENGLEAFEAIKKNKYDVVLMDVQMPVMGGFE 937 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 938 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 997 Query: 116 IKKYI 120 I K I Sbjct: 998 INKCI 1002 >gi|253699010|ref|YP_003020199.1| response regulator receiver protein [Geobacter sp. M21] gi|251773860|gb|ACT16441.1| response regulator receiver protein [Geobacter sp. M21] Length = 204 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D N+ + ++ Y L +G EAL ++ PD+I++D+ + E+ GL Sbjct: 4 KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEALLALAENLPDLILLDVMMPEMDGL 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + +K+DS ++IPVI +TA + + DE R + G Y+SKP++ I + ++ Sbjct: 63 EVCRILKDDSRYRDIPVIFITALSDEVDESRGFEAGAVDYLSKPVNPVILSHRVAVHL 120 >gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 277 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 42 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 101 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 102 EICR--RARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 159 >gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + VED+ +L +ET+G+ A +G E LE P++I++DI L + GLE+ Sbjct: 2 IFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALETPELILLDIMLPGMDGLEL 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K + ++IPVI +TA + D+ + G + Y++KP + + IK + Sbjct: 62 LSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRR 119 >gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|77359900|ref|YP_339475.1| response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874811|emb|CAI86032.1| putative response regulator [Pseudoalteromonas haloplanktis TAC125] Length = 549 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +++V+D LN L + L+ GY NG+ AL++ Q D++++D+ + + Sbjct: 1 MM-HILVVDDQALNRILLQRLLTQEGYTVSLAYNGVAALKILSQTPIDIVLLDVVMPIMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K IK+ +P+I +TA ER G + +I KP I IK + Sbjct: 60 GFETAKIIKQRFNDIHLPIIFITALDDHASFERCLAVGGDDFIQKPFEKVILHAKIKAHC 119 Query: 121 G 121 Sbjct: 120 R 120 >gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++++D+ + + + GY +G + + +A+++ P+++I+DI L + Sbjct: 1 MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI ++ ++D+ P++ ++A + + G + Y+ KP +L + ++ + Sbjct: 61 GWEICQRFRKDNFT---PILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] Length = 1287 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VEDN N + L+ G ++ +G +AL+L + + D+++MDIQ+ + G Sbjct: 924 RRLLLVEDNATNRLVATSLLGQLGAEVIEAVDGFQALKLLSRQQFDLVLMDIQMPGMDGY 983 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T++I+ + L ++P+IA+TA AM D++ R G +ISKP + + +Y+ Sbjct: 984 QTTRKIRNELMLTDLPIIAMTANAMPEDKQACRDAGMNCHISKPFEIDEVATKLLQYL 1041 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEIS 60 +V++VEDN + +F +L+ G NG+ A++ + P DV++ D QL + Sbjct: 779 RVLLVEDNHTSRLVFSELLRDLGCEVTALNNGLTAMKTIERMAPDSFDVLLADWQLPGLD 838 Query: 61 GLEITKQIKEDSELQEIP-VIAVTAF--AMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GLE+ I+ L P +I VTAF AM + + R+ +A + KP++ + ++ Sbjct: 839 GLELASWIRHLDSLSRQPGIIIVTAFSQAMLEAQLKHREEEFDATLIKPVTREMVSRCLQ 898 Query: 118 KYIGE 122 + Sbjct: 899 SVLER 903 >gi|332883803|gb|EGK04083.1| hypothetical protein HMPREF9456_01111 [Dysgonomonas mossii DSM 22836] Length = 1396 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+DNE + L Y + +G E + PD+I+ D+ + ++ G E Sbjct: 1149 LIVDDNEDFCEFITSLFIDD-YRTVIANDGEEGYSIVLDQLPDIILCDVMMPKMDGYEFC 1207 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K D IP+I +TA + + + + G + YISKP ++ + I K I Sbjct: 1208 RHVKGDIRTSHIPIILLTAKSSEESKYSGIEAGADDYISKPFNIDMLKLKIAKIIER 1264 >gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c] gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 257 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + GY +G+ ALEL + +PD+ ++D+ + + GLE Sbjct: 12 RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPRMDGLE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 +Q++ + ++PV+ +TA D G + Y+ KP +L Sbjct: 72 ACRQLRARGD--DLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELF 119 >gi|237654345|ref|YP_002890659.1| response regulator receiver protein [Thauera sp. MZ1T] gi|237625592|gb|ACR02282.1| response regulator receiver protein [Thauera sp. MZ1T] Length = 121 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 64/116 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D+ + ++++ +GY L NG +A+ +R PD+I+MD+ + ++G Sbjct: 4 RKILVVDDSPVERLALQEVLGRNGYQVLTAENGEQAIARSRSDHPDLILMDVVMPGMNGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + T+ I D E ++IP+I T+ + D+ + G Y+ KP+ + I+ Sbjct: 64 QATRTISRDDETRDIPIIMCTSKGQETDKIWGMRQGALDYLVKPVDHDELLARIRA 119 >gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++VED+ L + D + + + NG ALEL + D+I++DI + E+ Sbjct: 1 MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E S ++P+I +TA A D+ + G + Y++KP+S + + + Sbjct: 61 GWSVCRRIREKS---DVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALM 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 235 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++++D+E ++E G+ A+Q +G + E A KPD++++D++L +SG Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQ++ P+I ++A + D+ + + G + Y+ KP I+ + Sbjct: 72 TEICKQLRA--ARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLR 129 Query: 122 EA 123 A Sbjct: 130 RA 131 >gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 361 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 59/119 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ L D ++ +GY L +G AL+ + PD +++D + + G E Sbjct: 23 VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLARITPDAVLLDALMPGLDGFET 82 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IK D + +PVI +TA + + G Y++KP+ S I ++ + Sbjct: 83 CRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141 >gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGIT--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|297559295|ref|YP_003678269.1| response regulator receiver protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843743|gb|ADH65763.1| response regulator receiver protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 138 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 66/119 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+++ +L R +E G+ +G + L+ A P V+ MD+ + + G Sbjct: 17 RVLVVEDDDVIRELIRLNLELEGFEVFTAVDGQDCLDRAAHIDPHVVTMDVMMPRVDGWT 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ ++ P+I VTA + D +R R+ G +AY++KP + ++ I+ + Sbjct: 77 AVERLRADARTRDRPIIMVTARTQETDHQRGRRVGMDAYLTKPFDPDVLIDIIRSLVDR 135 >gi|326319281|ref|YP_004236953.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376117|gb|ADX48386.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 248 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D+ +L D + +G +G + +H D++++D+ L GL Sbjct: 10 ARILVVDDDPEIRELLCDYLRAAGLRPAAVADGEAMWQWLARHTADLVVLDLMLPGTDGL 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E IPV+ +TA D + G + Y+ KP + I + Sbjct: 70 ALCRALRE---CTHIPVVMLTARGALLDRILGLEMGADDYLPKPFDPRELLARINVVLRR 126 Query: 123 A 123 A Sbjct: 127 A 127 >gi|166366489|ref|YP_001658762.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] gi|166088862|dbj|BAG03570.1| two-component hybrid sensor and regulator [Microcystis aeruginosa NIES-843] Length = 368 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N++L ++ GY + NG AL R PD+I++DI + +++G ++ Sbjct: 10 VLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTVRSLIPDLILLDINMPDLNGYQV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D + +EIPVI ++A D+ + + G YISKP M I+ + Sbjct: 70 CEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQL 125 >gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++I+ED + + +E GY NG LE A D+I++D+ L E+ G Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++++ ++ P+I +TA D G + YI+KP ++ + ++ + Sbjct: 63 FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|163849322|ref|YP_001637366.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527316|ref|YP_002571787.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] gi|163670611|gb|ABY36977.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222451195|gb|ACM55461.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl] Length = 390 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++IV+D++ ++ ++ +GY + +G EAL+ ++ PD +I D+ L I Sbjct: 1 MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K++++ + +P++ +TA + + G Y++KP + +K Sbjct: 61 DGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 120 Query: 120 IGE 122 + Sbjct: 121 LAR 123 >gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] Length = 869 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 1 MLKKV-----------MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV 49 M +K+ ++++DN L+ + Y Q +G E L A + PD+ Sbjct: 611 MTEKITRPGEKEKPSLLVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRDVPDL 669 Query: 50 IIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109 II D+ + + GLE +++K D IPV+ +TA ++ G +AY++KP S Sbjct: 670 IICDVMMPVMDGLEFCRRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSG 729 Query: 110 SIFMETIKKYI 120 + ++ + Sbjct: 730 EVLKSRVRNLL 740 >gi|260910360|ref|ZP_05917033.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260635543|gb|EEX53560.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 858 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ +DN+ ++ R L+ T Y L NG AL+LA + PD+++ D+ + ++ GLE Sbjct: 611 TILFADDNDDVCQMVRTLLATR-YRVLTAPNGEVALQLAELNIPDLVVSDVMMPQMDGLE 669 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K+ + IPVI +TA + + G +AYI+KP S + + I + Sbjct: 670 LCRRLKQTTATSHIPVILLTARTLDEQRIAGYEHGADAYITKPFSAPLLLARIHNLL 726 >gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] Length = 1268 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 64/112 (57%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VEDN N + +L+ G ++ +G+EAL Q + +++MD+Q+ ++ G E T++ Sbjct: 930 VEDNPTNRLVATELLSQQGATIVEAESGVEALAALDQQEFSLVLMDVQMPDMDGYETTRR 989 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 I++ + ++P++A+TA AM D+ G +I+KP + +E I +Y Sbjct: 990 IRQMAHFADLPILAMTANAMPEDKVACLNAGMNDHIAKPFHIGEVVEKILQY 1041 Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 16/124 (12%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 V+IVEDN +F DL++ G + AL+ Q D++ +D +L + Sbjct: 779 VLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQADANGQPFDLLFIDWKLPGM 838 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMK------GDEERIRKGGCEAYISKPISLSIF 112 GL +T+ ++ L + P V+ TAF + + + + +A + KP++ + Sbjct: 839 DGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEETQSLL----DALLVKPVTPDMV 894 Query: 113 METI 116 T+ Sbjct: 895 KNTL 898 >gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 268 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR 157 >gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134] gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134] gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] Length = 231 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED L ++ Y + EALE ++ D+ I+DI L ++S Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLTICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345] gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 241 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQTGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|94264441|ref|ZP_01288230.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455131|gb|EAT05353.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 409 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 +++V+D +N+ + + ++ + L +G +ALELAR +PD+I++DI + + G Sbjct: 14 ATILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDG 72 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K D E ++IPVI VTA E++ + G Y+SKPI I ++ +I Sbjct: 73 HEVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHI 131 >gi|330892053|gb|EGH24714.1| two-component response regulator transcription regulator protein [Pseudomonas syringae pv. mori str. 301020] Length = 236 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++++D+ K+ + G+ L +G EA+ + + +++++DI + +SG Sbjct: 1 MPKVLLIDDDVELTKILSQYLSNEGFDVLAIHDGEEAISRSANERFEIVVLDIMMPRLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++I+ +S +P++ +TA D+ G + Y+SKP + + + I+ + Sbjct: 61 LQVLQRIRINS---SVPILMLTARGDDVDKVTGLNLGADDYVSKPCTPAELVARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|289623551|ref|ZP_06456505.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649158|ref|ZP_06480501.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867854|gb|EGH02563.1| sensory box protein/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 705 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G L + PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 279 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 53 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPELDGLE 112 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 113 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 168 >gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + ++ + + NG EALE D+I++DI L +++G E Sbjct: 2 RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIMLPKVNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++E+ E V+ +TA D+ + G + Y+ KP + I+ + Sbjct: 62 VIKKLRENKN--ETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRR 118 >gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|298489751|ref|YP_003719928.1| response regulator receiver modulated serine phosphatase ['Nostoc azollae' 0708] gi|298231669|gb|ADI62805.1| response regulator receiver modulated serine phosphatase ['Nostoc azollae' 0708] Length = 378 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 54/117 (46%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ + ++E GY + NG E + A P +II D + ++G+E+ Sbjct: 4 ILVIDDDYSIQIFLKRMLEKQGYEVITASNGQEGILQALACPPALIICDWIMPGLTGIEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 IK+D L I +T+ D + G + +ISKPI + ++ + Sbjct: 64 CDHIKKDPNLSTTFFILLTSLDSVADRVKGLDAGADDFISKPIEQNELQARVRAGLR 120 >gi|224369670|ref|YP_002603834.1| two-component response receiver and regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692387|gb|ACN15670.1| two-component response receiver and regulator protein [Desulfobacterium autotrophicum HRM2] Length = 222 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N+++ +++ GY G AL P++I++DI + ++G E+ Sbjct: 8 IIIVDDNPHNLRVLSTILKKEGYEIRPATGGQTALAAIDAKPPELILLDIMMPAMNGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK--YIGE 122 + +K++ + IPVI +TA D+ + GC YISKP + +K ++G Sbjct: 68 CECLKKNEGTRNIPVIFITALDDVKDKIKAFAMGCTDYISKPFQEEEILARVKTQIHMGR 127 >gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA D + G + Y+ KPI + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1238 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL+ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E ++P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSSLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + L + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|94264856|ref|ZP_01288631.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454677|gb|EAT04942.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 409 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 +++V+D +N+ + + ++ + L +G +ALELAR +PD+I++DI + + G Sbjct: 14 ATILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDG 72 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K D E ++IPVI VTA E++ + G Y+SKPI I ++ +I Sbjct: 73 HEVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHI 131 >gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 71/119 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E ++L + +GY L NG++A+++A+ KP ++++D+ L + G + Sbjct: 5 KILIVDDEEHIVELLHFNLVNAGYEVLSANNGIDAVKIAKAEKPSLLLLDLMLPGMDGFD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+IK DSE+++ +I +TA + D+ + G + YI+KP S+ + +K + Sbjct: 65 VCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 >gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] Length = 241 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ ++ + G+ +G ++ + D++I+DI + ++ Sbjct: 12 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ +K I Sbjct: 72 GLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGI 128 Query: 121 GEA 123 + Sbjct: 129 RRS 131 >gi|298385504|ref|ZP_06995062.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14] gi|298261645|gb|EFI04511.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14] Length = 231 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K V++VED + +D +E +G+ +G E L L + +PDV++ D+ + Sbjct: 1 MSKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G E+ ++I++ ++ PV+ +TA + D + G Y+ KP + + IK Sbjct: 61 KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIK 118 Query: 118 KYIGEA 123 +G+A Sbjct: 119 ALMGKA 124 >gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K V++VED + + ++ G+ L+ G ALE+ R D++I+D+ L ++ G Sbjct: 1 MKTVLVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLMLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ I++ IP++ ++A + + G + Y+ KP + ++ + Sbjct: 61 EQVCVSIRK---TNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42] gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42] Length = 227 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN + G+ A +G+E + + D++I+DI L + G+ Sbjct: 2 KILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGVT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E +P+I +TA + D+ + G + Y++KP S + IK I Sbjct: 62 ICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117 >gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium diphtheriae] Length = 240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ AR+ PDV+++D+ L E+ GLE Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 74 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 >gi|17230613|ref|NP_487161.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132216|dbj|BAB74820.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 382 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D N + L+ Y +G EA+ +PD+I++D+ + + G+E+ Sbjct: 6 ILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNLFQPDLILLDVMMPGMDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK + Q +P+I VTA K D R + G + +ISKPI+ + + Sbjct: 66 CQRIKAMPQWQPVPIIMVTALTAKEDLARCLQSGADDFISKPINALELRARLHSMLR 122 >gi|332527152|ref|ZP_08403227.1| response regulator receiver modulated metal dependent phosphohydrolase [Rubrivivax benzoatilyticus JA2] gi|332111578|gb|EGJ11560.1| response regulator receiver modulated metal dependent phosphohydrolase [Rubrivivax benzoatilyticus JA2] Length = 392 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 ++IV+D N+K+ ++ GY + NG AL LA + P +I++D+ + ++SG+ Sbjct: 13 TILIVDDEPANLKILATILGDKGYRVIAASNGETALRLAERPPLPSLILLDVMMPDMSGM 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E+ + IPV+ VTA + DEE K G YI KP S I + ++ + Sbjct: 73 VVLEKLRENPATRAIPVVMVTALGKERDEETGLKAGASDYIKKPFSPLILLARVRSQLDA 132 Query: 123 A 123 A Sbjct: 133 A 133 >gi|325277539|ref|ZP_08143134.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] gi|324097320|gb|EGB95571.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51] Length = 456 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G I RNG EA+E QH D+++MD+ + E+ G Sbjct: 332 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 391 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ +++P+IAVTA AMK D+ R + G Y++KPI L I+ ++ Sbjct: 392 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQHRCLQAGANDYLAKPIDLDRLFSLIRVWLP 451 Query: 122 E 122 + Sbjct: 452 Q 452 Score = 97.1 bits (242), Expect = 8e-19, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E ELA + PD I++D++L + SGL + Sbjct: 66 ILVIEDEPNFARILFDLAHELGYSCLVAHAADEGFELAARFIPDAILLDMRLPDHSGLTV 125 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE ++ + IPV ++ D G Y KP S E + Sbjct: 126 LQRLKEQADTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 177 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED++L + LI EAL L R++ D +I+D++L ++ G Sbjct: 186 KHILLVEDDDLQRESIARLIGDDDVEITAVGMAQEALALLRENIYDCMIIDLKLPDMLGN 245 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 E+ K++ + PVI T + +EE Sbjct: 246 ELLKRMTAEDIRAFPPVIVYTGRNLTREEE 275 >gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 63/120 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED + + GY ++ NG EALELA + D+I++DI L ++ Sbjct: 1 MGAHILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIMLPGLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++ ++ E+ PVI +TA D+ G YI+KP ++ + I+ + Sbjct: 61 GLEVLRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVAL 120 >gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium 3_1_53] gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D E + R E G+ + +GM+A+E +Q D+IIMDI + + G Sbjct: 1 MSRLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAAYDLIIMDIMMPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I++D PVI ++A + D + G + Y+ KP S M + + Sbjct: 61 FSAVKEIRKD---ASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 247 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D+ + +L +E G+ +GM + +P ++++DI + E+ Sbjct: 1 MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA A D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 305 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 60/119 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + +E SG L +G AL +A + PD+++MD + E+ G E Sbjct: 11 VLVVDDSPETLGFLTQALERSGVTVLVATSGQAALSVAERVTPDMVLMDAVMPEMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IK LQ +PVI +T + + G +++KPI++ I+ ++ A Sbjct: 71 CRRIKTRPALQHVPVIFMTGLSETEHVVHALESGGVDFLTKPINIDELQARIRVHLANA 129 >gi|325924825|ref|ZP_08186260.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] gi|325544755|gb|EGD16103.1| signal transduction histidine kinase [Xanthomonas perforans 91-118] Length = 1057 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 937 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 996 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 997 TAMRQIRTNRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1056 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + +L + + N EAL LA + +P I++DI L + SGL + Sbjct: 671 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAEMRPSGILLDIGLPDASGLSV 730 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A + + G Y+ KP + + I++ Sbjct: 731 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 782 Score = 74.0 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 60/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + L+ + + EA++ + D ++ D+ L + SG Sbjct: 791 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLARSTFDCMVTDLALPDGSGY 850 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 851 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 910 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 911 SVEASLPSDQQRLLREA 927 >gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + R + GY L+ G EAL+ A PD++I+D+ L +I G+E Sbjct: 7 RILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGVE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E +P++ ++ + D+ G + Y++KP + + I+ I Sbjct: 67 VVRRIRE---WSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIR 121 >gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1838 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+V++V+D+ N+ ++E NG +A+ + DVI+MD+ + E+ G Sbjct: 1718 KRVLVVDDDIRNIFALTAVLERHHMTVFTAENGRDAINMLESTPDIDVILMDVMMPELDG 1777 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+++ + + +P+I++TA AM GD E+ G YISKP+ + ++ ++ Sbjct: 1778 YETTRLIRQNRKFKNLPIISLTAKAMPGDREKSIASGASDYISKPVHSEKLLSLLRVWL 1836 Score = 90.2 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+IVED+ + DL G++AL G +A+ LA+ ++P I +D+ L + SG Sbjct: 1450 RTVLIVEDDATFAGILLDLAHERGFMALIASRGEQAITLAQTYRPSAITLDLSLPDTSGW 1509 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKY 119 + +K D + IPV ++ + RK G +++K + + ++ + Sbjct: 1510 AVLDHLKHDPVTRHIPVHIISG---EEATLLGRKLGALDHVTKSGDRAALHQAFENLESF 1566 Query: 120 IGE 122 I Sbjct: 1567 IAR 1569 Score = 89.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 59/129 (45%), Gaps = 8/129 (6%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED+ + DLI +G EAL D I++D++L ++SG Sbjct: 1572 KNLLVVEDDLTQRENIVDLIGNGDVKTTAVSSGAEALGALATTAFDCIVLDLKLPDMSGF 1631 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME------- 114 ++ ++++ + IP+I TA + +E + ++ I K + S ++ Sbjct: 1632 DLITTLQKNPAFRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFLH 1691 Query: 115 TIKKYIGEA 123 ++ + EA Sbjct: 1692 RVEANLPEA 1700 >gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|148256093|ref|YP_001240678.1| response regulator PleD [Bradyrhizobium sp. BTAi1] gi|146408266|gb|ABQ36772.1| response regulator receiver modulated diguanylate cyclase [Bradyrhizobium sp. BTAi1] Length = 466 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 61/114 (53%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 V+D N+KL + + L NG EAL++ ++ + D+I++D+ + ++ G E+ ++ Sbjct: 2 VDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAECDIILLDVMMPDMDGFEVCRR 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +K + IPV+ VTA D R + G + +++KP+S + + ++ Sbjct: 62 LKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTR 115 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ + N EA+ A + D++I+ + L + GL Sbjct: 151 RILLVDDRPSSYERLGPMLAAE-HSVDVEPNPSEAVFNAAEGNYDLVIVSLDLDDFDGLR 209 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P++A+ A A R + G Y+ +P+ + M + I + Sbjct: 210 LCSQLRSLERTRHVPILAI-AEAENNTRLLRGLEIGVNDYLLRPVDKNELMARARTQIRK 268 >gi|89954507|gb|ABD83655.1| response regulator protein-like [Rickettsia honei] Length = 450 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D+I++D+ + E+ G Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK + E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 CEVCKTIKTNPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 68.2 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSGE-LDIINEYTPDLVIISSTLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 211 RISGILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270 >gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM 22836] Length = 229 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++VED +L + +E GYI +G L H D+II D+ L I+G Sbjct: 1 MKKILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMGKRLVNNHIYDLIITDVILPHING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ EIP+I +TA D+ G + Y+ KP L I + Sbjct: 61 FELCKEIRA--VHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|313673726|ref|YP_004051837.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940482|gb|ADR19674.1| response regulator receiver protein [Calditerrivibrio nitroreducens DSM 19672] Length = 121 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 68/118 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++ +D K+ ++ +G+ ++ NG +A+ELA+ H P++I++D+ + E+ G+ Sbjct: 2 KVLLADDELRLRKVVVLHLKKAGFDVIEASNGKQAVELAKIHNPEIIVLDVMMPEMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+ ++ E + P+I +TA A D E + G Y++KP S +E I++ +G Sbjct: 62 ACKEFRKSPEFAKTPIIMLTAKATSDDIEVGKSAGASEYLTKPFSPKELIEKIQELMG 119 >gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126] gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ P + TA + D+ G + +I KP S + + + Sbjct: 61 GYDFISEV--QYIAPNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1367 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 76/121 (62%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+DN +N K+ +++ +G I +G +AL+ + H D+I MDIQ+ + G+E Sbjct: 1107 RILIVDDNIVNRKVASEILNNAGCIISLAESGYQALDKVQAHSYDLIFMDIQMPGMDGVE 1166 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IGE 122 T+ IK Q P++A+TA++MK D ER + G + Y+SKP+ ++ +++Y +G+ Sbjct: 1167 TTRAIKGLGIEQLPPIVAMTAYSMKEDRERFMEEGLDDYVSKPVKAQTLIQKVQEYILGK 1226 Query: 123 A 123 + Sbjct: 1227 S 1227 >gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis] Length = 220 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED++ R + +GY +G EA ++ ++I+DI L ++ Sbjct: 1 MSIRILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ + + + P++ +TA + ++ R + Y++KP + I ++ ++ + Sbjct: 61 GHELLREFRAKN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 230 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED+ ++ + G+ +G E + D+II+DI + ++ Sbjct: 1 MSRHILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I+E S +P++ ++A D+ G + YI KP S+ K I Sbjct: 61 GLEVVRIIREKSA---VPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300855125|ref|YP_003780109.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435240|gb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + + ++ GY+ + +G EAL P ++I+D+ L ++ Sbjct: 1 MNEKILLVDDEKSILDVLTYALKREGYLVERAYDGEEALHKVDIFNPHIVILDLMLPVMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I K++ E + I +I +TA D+ + G + Y++KP + + IK + Sbjct: 61 GYDICKKL----ENKNIGIIMLTAKEDIVDKILGLEFGADDYMTKPFDIRELLARIKSLV 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|237717953|ref|ZP_04548434.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452755|gb|EEO58546.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1511 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALKYLPDIIISDVMMPEKDGIEMT 1296 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351 >gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] Length = 1331 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGISAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 243 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 70/123 (56%), Gaps = 5/123 (4%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++VED+ + R L+E+ Y ++ NG+ L+L + D++I+DI + ++ Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDE-TIDLVILDIMMPKL 64 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GL++ ++I++ +PV+ +TA + + D+ G + Y++KP S + + +K Sbjct: 65 NGLKVCEEIRK---TSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKAL 121 Query: 120 IGE 122 + Sbjct: 122 LRR 124 >gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L +E + + R+G E + ++++D+ L SGLE Sbjct: 6 HILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHYQIVVLDLMLPGESGLE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ +P+I +TA + D + G + Y+ KP + + I+ + + Sbjct: 66 LARWLRGQ---ANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRS 122 >gi|153870478|ref|ZP_01999872.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073055|gb|EDN70127.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 402 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 65/113 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+++ ++ GY T +G AL+ A+ PD++++DIQ+ E++G E+ Sbjct: 8 ILLVDDIPTNLQVLTQMLTEHGYKIRPTTSGQLALKSAQFTLPDLVLLDIQMPEMNGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +++K D + +IPVI ++A + D+ + G Y++KP + ++ Sbjct: 68 CEKLKADEKTCDIPVIFISALSEVFDKVKAFSVGGVDYVTKPFQAEEVLARVE 120 >gi|88860786|ref|ZP_01135423.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas tunicata D2] gi|88817381|gb|EAR27199.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas tunicata D2] Length = 919 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 69/116 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N + ++++T + NG EALEL + + D+++MD Q+ + G E Sbjct: 802 RILVAEDNPINQIVITEMLKTLSIESTLANNGAEALELLKTNNFDLVLMDCQMPVLDGYE 861 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TKQI+ ++ Q +PVIA+TA M D+ + G A+++KP+ L + + ++ Sbjct: 862 ATKQIRAQAQWQHLPVIALTANVMPEDKAYALEVGFNAHLAKPLDLKKLTQCLAQF 917 >gi|127511048|ref|YP_001092245.1| response regulator receiver protein [Shewanella loihica PV-4] gi|126636343|gb|ABO21986.1| response regulator receiver protein [Shewanella loihica PV-4] Length = 120 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 60/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++ V+D+ ++ ++T+G+ + NG EAL A+ D++I D+ + + G Sbjct: 1 MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALTQAKSQDYDLVISDVNMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + ++ + P++ +T + ++ R G +I KP + + T+ K + Sbjct: 61 ITLIRNLRSLPNYKFTPLLMLTTESGSEKKQEGRSAGATGWIVKPFNPDQLLATVNKVLR 120 >gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO] gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] Length = 222 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L+R ++E +G+ + NG +AL+ + ++II DI + ++ G Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ S + PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321] gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321] Length = 232 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALE+ ++ D+II DI + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKAIDLIITDIMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + + P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|299148418|ref|ZP_07041480.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298513179|gb|EFI37066.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1511 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALKYLPDIIISDVMMPEKDGIEMT 1296 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351 >gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1] gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1] Length = 226 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + +++T+ Y +G L+ A D+II+DI L +++G + Sbjct: 2 RILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGFD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K ++D + P++ +TA D+ R G + Y++KP + + I+ + Sbjct: 62 ILKMCRQDKI--KTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRR 118 >gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 247 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D+ + +L +E G+ +GM + +P ++++DI + E+ Sbjct: 1 MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA A D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|261416187|ref|YP_003249870.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372643|gb|ACX75388.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326964|gb|ADL26165.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1211 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 75/124 (60%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59 KK+++VEDNELN ++ + ++ G+ +G AL + + KP D+I+MD+Q+ + Sbjct: 1088 KKILLVEDNELNREIAQSVLGEMGFGVDCAEDGRVALNVLEKAKPGAYDLILMDMQMPVM 1147 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GLE T++I+ D +++P++A+TA A + D + G +++KPI + + ++ Sbjct: 1148 DGLEATRRIRAMRDDYFKKVPIVAMTANAFEEDRKAALDAGMNEHVAKPIDVEKLKKVLR 1207 Query: 118 KYIG 121 K++G Sbjct: 1208 KFLG 1211 Score = 57.8 bits (140), Expect = 5e-07, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 + ++V + +L+ G A T G EA+ A++ VII+D L Sbjct: 947 ARALVVASDYNACSSATNLLRRLGMRAEWTMYGREAVLRAKEAVDRHECYSVIILDDLLL 1006 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ +E +Q++ P+I + ++ E+ R+ G A+ISKP+ L+ + + Sbjct: 1007 DMESVEAVEQLRMIPGSDN-PIIVMASYDCANIEKSAREAGVTAFISKPLFLTEMHDVLA 1065 Query: 118 KYIG 121 + IG Sbjct: 1066 RAIG 1069 >gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 1240 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VEDN +N ++ ++E G NG EAL+ ++++MD + ++ G Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAIANKVYELVLMDCHMPQMDGY 721 Query: 63 EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T++I+ ++ +++P+IA+TA KGD ++ G Y+ KP+ LS+ + ++ ++G Sbjct: 722 EATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWLG 781 Query: 122 EA 123 + Sbjct: 782 TS 783 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 59/117 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D+ R+++E GY + NG +ALE +Q PD+++MD + + G Sbjct: 925 RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQMPDLVLMDAVMPVLDGFN 984 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 QI++ + + PV+ +TA E G YI KP+ S+ + + + + Sbjct: 985 ACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLL 1041 Score = 59.0 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 6/118 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +++IV+++ + + G + +G +AL + R D++++D + + Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G + +I EDS + + +I + G Y++KP+ S I Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVI 635 >gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676] gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550] gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550] gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676] gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 233 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + +L ++ Y +G EAL+ D +++DI + + GL Sbjct: 2 RILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K +++ + + PV+ +TA D R G Y+ KP + + I+ + + Sbjct: 62 VLKTMRQ--KGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRK 118 >gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 238 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L R +E GY+ +G +AL L Q + D +I+D+ L + GL Sbjct: 5 KQILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++I++ + +P+I ++A + + D + G + Y++KP S+ + IK Sbjct: 65 EICRRIRQL--TRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 122 >gi|78046888|ref|YP_363063.1| two-component system sensor/response regulator fusionprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035318|emb|CAJ22963.1| two-component system sensor/response regulator fusionprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1068 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 948 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 1007 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI+KPI + + + + Sbjct: 1008 TAMRQIRTNRQWQDLPIIALTAKAMADDRERCLEAGANDYIAKPIDVDKLVSLCRVWCSR 1067 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + +L + + N EAL LA + +P I++DI L + SGL + Sbjct: 682 ILAVEDDTRFAQALVELAHELDFDCVVAPNAEEALRLAAEMRPSGILLDIGLPDASGLSV 741 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A + + G Y+ KP + + I++ Sbjct: 742 LERLKRDPATRHVPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 793 Score = 72.9 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ + L+ + + EA++ D ++ D+ L + SG Sbjct: 802 RRLLIVEDDSALRANLQLLLARDQLDIVAVGSIAEAMDQLAGSTFDCMVTDLALPDGSGY 861 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 862 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQGLRRYSKSIIIKGVRSPERLLDEVTLFLH 921 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 922 SVEASLPSDQQRLLREA 938 >gi|66822471|ref|XP_644590.1| histidine kinase [Dictyostelium discoideum AX4] gi|74860532|sp|Q86AT9|DHKI_DICDI RecName: Full=Hybrid signal transduction histidine kinase I gi|60472742|gb|EAL70692.1| histidine kinase [Dictyostelium discoideum AX4] Length = 1736 Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats. Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57 +KV++ EDN +N KL + L+ G+ ++G +AL+ + K D I+MDIQ+ Sbjct: 1550 QKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSILYDCILMDIQMP 1609 Query: 58 EISGLEITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 +SGLE T I+E E IP+IAVTA AMKGD+E+ + G + Y++KPI+ + E Sbjct: 1610 ILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESGVDDYVTKPINPKLLYEV 1669 Query: 116 IKKYI 120 I I Sbjct: 1670 INTQI 1674 >gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 242 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED + ++ G +L +G EAL + + KPD++++D+Q+ ++ G ++ Sbjct: 16 VLIAEDEAEIADILAAYLQRHGLRSLHAADGREALAMHQAFKPDLLLLDVQMPQLDGWQV 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ + PVI +TA D+ + G + Y+ KP + + + ++ + Sbjct: 76 LSEIRARG---DTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRR 130 >gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 228 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + LEL R+ +PD++++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|257487365|ref|ZP_05641406.1| sensory box protein/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009036|gb|EGH89092.1| sensory box protein/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 705 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G L + PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|254282648|ref|ZP_04957616.1| response regulator receiver modulated metal dependent phosphohydrolase [gamma proteobacterium NOR51-B] gi|219678851|gb|EED35200.1| response regulator receiver modulated metal dependent phosphohydrolase [gamma proteobacterium NOR51-B] Length = 342 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+ V+D N+ + ++ Y NG +A++LAR+ +PD+I++DI + I G Sbjct: 9 QTVLAVDDTPENIDVLVGTLKDE-YRVRAAINGEKAIKLARETQPDIILLDIMMPGIDGY 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K D + IP+I +TA GDE + G YI+KP S + + ++ Sbjct: 68 EVCRQLKADYTTRHIPIIFITAKNQLGDELHGLELGAVDYITKPFSPPVVKARLATHL 125 >gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 223 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] Length = 228 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELAKEIRKTN--PHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium glutamicum ATCC 13032] gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+ G+ + +G AL +++ D++++D+ L +SG Sbjct: 1 MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKELRS---VSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 511 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D N+ L ++ GY G L A PD+I++D+ + E++G E+ Sbjct: 13 ILVIDDTPENLNLLSAMLTEQGYKVRSVTKGSTGLRGANAVPPDLILLDVNMPEMNGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K ++IPVI ++A D+ + G YI+KP L + I+ ++ Sbjct: 73 CEHLKASDRTRKIPVIFISALGDVLDKVKAFAVGGVDYITKPFQLEEVLARIENHL 128 >gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens DSM 7] gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens TA208] gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 227 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN + G+ A +G+E + + D++I+DI L + G+ Sbjct: 2 KILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGVT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E +P+I +TA + D+ + G + Y++KP S + IK I Sbjct: 62 ICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117 >gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 222 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED+ L+R ++E +G+ + NG +AL+ + ++II DI + ++ G Sbjct: 1 MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLETTRIELIITDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ S + PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 226 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I+ Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] Length = 224 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++VED+ ++ D E+ G+ T +G E LE + + +I++D+ L + Sbjct: 1 MDQKLLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVMLPGEN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++I+E + ++PVI +TA + DE G + Y++KP SL + + I Sbjct: 61 GFTICRKIRE---ISDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALI 117 Query: 121 GE 122 G Sbjct: 118 GR 119 >gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198] gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198] Length = 240 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV+IV+D+ L + G+ N + L + +I++D+ L G Sbjct: 4 SYKVLIVDDDLRLRSLLERYLTEQGFQIRTAANADQMDRLLTRESIHLIVLDLMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ + IP+I VTA + D + G + YISKP + + I+ + Sbjct: 64 LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 242 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++V+D+ + +L ++ G+ +NG+ + +P +I++DI + E+ Sbjct: 1 MNQSILVVDDDPVVRELVSGYLQGRGFKVDTLQNGLALQRRLQDERPALIVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA + D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARSDPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 224 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 ++KV+++ED E + + +E +GY L NG LE +K +I++DI L +IS Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+E S+ +PV+ +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117 Query: 121 GE 122 Sbjct: 118 SR 119 >gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri] gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] Length = 221 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + + + SGY NG EA+E A+++ DVII+DI + SGLE Sbjct: 2 RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ ++ +TA + D+ G + Y++KP SL + ++ Sbjct: 62 ALKEIRATGN--RTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELLARLRSRQRR 118 >gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis 638R] Length = 228 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED + L R +E +GY L +G L + R + D++I DI L ++ G Sbjct: 1 MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ IP++ +TA D+ G + Y+ KP I+ + Sbjct: 61 FELCKEIRA--ANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A] gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A] gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 243 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGI--NAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED K+ + Y +G AL+ + DV+I+DI + + GL Sbjct: 2 RILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + + +PV+ +TA D R G Y+ KP + + I+ + Sbjct: 62 VLREIRQKN--KHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118 >gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 239 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++V+D+ L + G+ NG + L + ++++D+ L G Sbjct: 4 SHKILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 64 LSICRRLRHVNNT--LPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1238 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL+ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E ++P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADDLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + L + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|294776315|ref|ZP_06741797.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294449832|gb|EFG18350.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1329 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED++ + + + Y NG EAL++ + KPD+++ DI + E+ G Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK + IPVI +TA + + + G + Y+ KP ++ I +I + Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189 Query: 122 EA 123 A Sbjct: 1190 RA 1191 >gi|282899741|ref|ZP_06307704.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195356|gb|EFA70290.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 368 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D N+ L + L+E+ GY +G AL+ Q PD+I++D+ + E+ G Sbjct: 10 ARILVVDDRRDNLILVQTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T+ I+ + + IP++ +TAF + G + +I KP + + ++ + Sbjct: 70 EVTRTIRSYTNIDYIPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLR 127 >gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 240 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ R+ PDV+++D+ L E+ GLE Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 74 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 >gi|254885151|ref|ZP_05257861.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319641338|ref|ZP_07996033.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254837944|gb|EET18253.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387019|gb|EFV67903.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1329 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED++ + + + Y NG EAL++ + KPD+++ DI + E+ G Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK + IPVI +TA + + + G + Y+ KP ++ I +I + Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189 Query: 122 EA 123 A Sbjct: 1190 RA 1191 >gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 223 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRR 117 >gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] Length = 254 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + IV+D+E L D + +G+ N E LE+ R+ +I+MDI L ++GLE Sbjct: 6 TICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGLE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +S +PVI +TA D + G + Y+SKP + I+ + Sbjct: 66 LFRNLRAES---TVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRR 121 >gi|189467816|ref|ZP_03016601.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM 17393] gi|189436080|gb|EDV05065.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM 17393] Length = 1331 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 1/112 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+E K + + + + NG EAL L + +PD+II DI + E+ GL Sbjct: 1072 HVLVVEDDEEIRKYICRELASD-FHMHECANGKEALTLILKKEPDLIISDIMMPEMDGLT 1130 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + K+IK++ + IP+I +TA + + D G +AYI KP S+ I +T Sbjct: 1131 LCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKT 1182 >gi|150006322|ref|YP_001301066.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149934746|gb|ABR41444.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1329 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED++ + + + Y NG EAL++ + KPD+++ DI + E+ G Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK + IPVI +TA + + + G + Y+ KP ++ I +I + Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189 Query: 122 EA 123 A Sbjct: 1190 RA 1191 >gi|330988050|gb|EGH86153.1| sensory box protein/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 705 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G L + PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEHSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLR 124 >gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 248 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ L + G+ +G+ A+ A++ PDVI++DI L + GLE Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ S +PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 78 VMRRVRGHS--PNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 >gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 243 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED +L + G+ +G E A + D+I++D+ L ++ Sbjct: 1 MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I +++ P+I +TA + + + K G + YI+KP +S + + + Sbjct: 61 GLDILSRLRHQGLT--TPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 228 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D ++ G++ +G +ALE R PDV+I+D+ + ++ Sbjct: 1 MDKKILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++ + I ++ +TA D+ + G + ++SKP L + IK + Sbjct: 61 GYEVCRRL---ESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALV 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284050134|ref|ZP_06380344.1| response regulator receiver Signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 372 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ V+D+ N+ L ++ GY +G AL+ + P ++++D+ + I G E Sbjct: 14 HILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T++I+ + L IP++ +TA G + +I KP+ + + ++ + Sbjct: 74 VTRRIRNNPNLPFIPILLITAHDQSS-VVEGLDAGADDFIRKPVEIDELLARVRSLLR 130 >gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 226 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ ++ T G+ + +G AL R +PD++++D+ L Sbjct: 1 MKSRVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLPGKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+ +S +P+I +TA + D + G + Y+ KP + ++ + Sbjct: 61 GTQVAREIRAESG---VPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254796867|ref|YP_003081704.1| Response regulator/GGDEF domain protein PleD [Neorickettsia risticii str. Illinois] gi|254590103|gb|ACT69465.1| Response regulator/GGDEF domain protein PleD [Neorickettsia risticii str. Illinois] Length = 457 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D N+K+ + Y + +G+ A+ELARQH+PDVI++D+ + E+ Sbjct: 1 MTALILVVDDIPSNIKILEIKLTAKYYQVITASSGVAAIELARQHQPDVILLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +++K D IPVI VTA ++ G + ++ KP IK + Sbjct: 61 GFETCRRLKSDYSTMHIPVIIVTALNDIENKVEGLSSGADDFLVKPAKDFTLFIRIKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 50.5 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 42 ARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGG 98 A DV+I++I L + L + IK + + IP+IA+ + DE I + G Sbjct: 191 AEYTTFDVLIVNISLSK-DLLRLCSAIKSQLKTRSIPIIAI--VDDEDDESLITEITELG 247 Query: 99 CEAYISKPISLSIFMETIKKYIGE 122 YI P++ S F+ + + Sbjct: 248 INDYICVPVNKSEFIARVTTQVKR 271 >gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1258 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 7/122 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N ++ L++ GY A NG+E LE ++ DV+ MD+Q+ E+ GLE Sbjct: 962 RILLAEDNPVNQQVALHLLQRMGYRADVAGNGLEVLEALQRQPYDVVFMDVQMPEMDGLE 1021 Query: 64 ITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++I ++ ++ Q +IA+TA AM GD E + G + YISKPI + +E + Sbjct: 1022 ASRRICQEWCDLDGKTQSQRPRIIAMTANAMVGDREMCIEAGMDDYISKPIRIEELVEAL 1081 Query: 117 KK 118 KK Sbjct: 1082 KK 1083 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 65/123 (52%), Gaps = 9/123 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 ++++IV+DN+ N K+ + G ++G++AL+ Q + D+ I+D+Q+ E+ G Sbjct: 816 QRLLIVDDNDTNRKILMRQAQVWGMECYAAQSGVQALDWLHQGERFDLAILDMQMPEMDG 875 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA----MKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + ++I++ Q +P++ +++ D ++ +++KPI S + + Sbjct: 876 VTLAQKIRKLPGCQTLPLVMLSSLGELQVDTPDVKQTFA----GFLTKPIKQSQLCDVLM 931 Query: 118 KYI 120 + + Sbjct: 932 QAM 934 >gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+I+ED + +K+ + +E GY + +G+ LEL ++ PD++++D+ L +SG E Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+++ QE P++ +TA + ++ G + Y+ KP S + +K + Sbjct: 69 IARKIRKE---QETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRR 124 >gi|162450210|ref|YP_001612577.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161160792|emb|CAN92097.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 561 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+DN N+ L D + SG+ +G AL LAR+ PD+I++D+++ + G E Sbjct: 8 TILIVDDNPRNLGLLSDTLTGSGFEVAVAVDGARALRLAREGMPDLILLDVKMDGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAM-KGDEERIRKGGCEAYISKPISLSIFMETIKKY--I 120 +++K D IPVI +TA D + G Y++KP + ++ + + Sbjct: 68 TCRRLKGDPATAAIPVIFMTASTDLSADRVKGLNLGAVDYLAKPFLDEELLARVRVHTKL 127 Query: 121 GE 122 Sbjct: 128 RR 129 >gi|77360093|ref|YP_339668.1| response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Pseudoalteromonas haloplanktis TAC125] gi|76875004|emb|CAI86225.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Pseudoalteromonas haloplanktis TAC125] Length = 331 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D N+K+ R+++ Y ++G A+ L + P +I++DI + +++G E Sbjct: 9 RILIVDDEPANLKVMREVLGNQ-YRMSFAKSGAAAIALLEKELPKLILLDIMMPDMNGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K + IP+I VTA + + DE + + G YI+KPIS +I +K ++ Sbjct: 68 VCQIVKANPATSHIPIIFVTALSDESDEFKGFELGAVDYITKPISPAIVRARVKTHL 124 >gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 224 Score = 151 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 ++KV+++ED E + + +E +GY L NG LE +K +I++DI L +IS Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+E S+ +PV+ +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117 Query: 121 GE 122 Sbjct: 118 SR 119 >gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 227 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED+ + + + + NG++ L+ KPD+II+DI L ++G Sbjct: 1 MKKILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ +I+E ++P++ +TA + G + Y+ KP ++ + Sbjct: 61 IQVCSKIRE---TSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes (paired with YvrG) [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + + + + ++E GY L + EA+ + + +K D+I++D+ + +SG E Sbjct: 17 ILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E + P+ +TA + D+ G + YI+KP + I+ ++ Sbjct: 77 ACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 132 >gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D E ++ + +E G+I +G EA+ LA++ P +II+DI L I+G E Sbjct: 10 HILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGYE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +IK+ +I +TA D + G + Y+ KP S + I + + Sbjct: 70 VCSEIKKWVNAS---IIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNS 126 >gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 1236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN++N K+ R + GY A +G EAL+ + D+++ D+ + E+ G E+ Sbjct: 981 ILVAEDNDINQKVIRQQLNLLGYAADIASDGKEALKRWQTGDYDLLLTDLHMPEMDGFEL 1040 Query: 65 TKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + IP++A+TA A+KG++ER + G + Y+SKP+ L ++KY+ Sbjct: 1041 TREIRTIEANQKRIPIVALTANALKGEKERCLQTGMDDYLSKPVQLEDLRAMLEKYL 1097 >gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 253 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+D + +E + NG++AL LAR+ PDV+++D+ L + G+E Sbjct: 19 RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLPGMDGIE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + V+ +TA + + D G + Y++KP S + I+ + Sbjct: 79 VCRELR---TFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 134 >gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA] gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALEL ++ D+II D+ + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ E P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ ++ GY L+ +G EALE+ ++++ ++IMD+ + + G Sbjct: 5 MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E+S IP+I ++A D+ G + Y+ KP + + +K + Sbjct: 65 IRATLKIREES---SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALEL ++ D+II D+ + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ E P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLNLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 65/119 (54%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + L +++ G+ + +G+EA+ L R + D+II+D+ + ++G+E Sbjct: 5 TILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLVRDNDIDLIILDVMMPNLNGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E ++E+P+I ++A + D+ G + Y++KP + + +K + Sbjct: 65 TCLKIRE---IKEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRR 120 >gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED K+ + Y +G AL+ + DV+I+DI + + GL Sbjct: 2 RILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ + + +PV+ +TA D R G Y+ KP + + I+ + Sbjct: 62 VLREIRQKN--KHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118 >gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L ++ Y G +AL+ R D+ I+D+ L ++ G I Sbjct: 5 ILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVMLPDMDGFSI 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+++ P+I +TA D+ G + Y++KP + +K + Sbjct: 65 CRTIRQNYTW---PIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRR 119 >gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum CMR15] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 57/114 (50%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 ED +L ++ +G+ ++ N +AL L PD++++D L SG+ K++ Sbjct: 2 EDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMFAKEL 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++IP+I +TA + + D+ G + Y++KP S + IK + Sbjct: 62 RANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 115 >gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++ A G E L+ ++ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K+++V+D++ ++L I GY + +G EAL + PD +II+D+ + E+ G Sbjct: 2 KILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTN-PDIGLIILDLMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ KQ+++DS +IP++ ++A D+ + G + Y++KP + M +K + Sbjct: 61 MQVIKQVRKDS---DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 628 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ ++ + Y +G + E + D++++DI+L + G+ Sbjct: 2 RILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q++ + ++P++ +TA + D+ + G + Y+ KP+ ++ I+ + + Sbjct: 62 LCHQLRSHNF--QVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRS 119 Score = 132 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +VMIV+D+ + + L++ G + + + + PD++++DI++ ++G+E Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ D + +PV+ VTA + E++ + G + Y++KP + S I + Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKR 615 Score = 35.9 bits (83), Expect = 1.8, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 19/46 (41%) Query: 77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 IP + T + + G A++ KP+++ + ++ + Sbjct: 445 IPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVVRDVFRQ 490 >gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++I++D E +KL +++ G+ +G L ++ PD+I++DI L + G Sbjct: 8 KKILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKRISPDIILLDIMLPDEEG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ S +P++ ++A + D G + YI+KP S IK + Sbjct: 68 YEVCKKIRKSS---NVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILR 124 Query: 122 EA 123 + Sbjct: 125 RS 126 >gi|113477434|ref|YP_723495.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] gi|110168482|gb|ABG53022.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101] Length = 351 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN+ N L ++ G++ +G +ALE+ R H D++++DI + +++G ++ Sbjct: 8 VLVVDDNQFNRDLLARRVKRQGHMISSASDGFQALEMVRNHSFDLVLLDIMMPQMNGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D L+ IPVI ++A R + G E Y+SKP + + I + Sbjct: 68 LETLKADPALRHIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPILLKARINACL 123 >gi|293370383|ref|ZP_06616937.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292634531|gb|EFF53066.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1470 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1197 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALKYLPDIIISDVMMPEKDGIEMT 1255 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1256 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1310 >gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10] gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++VED + L + + + +G EA Q+ + I+D+ L +I+G Sbjct: 1 MEKILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPDITG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I++ P+I +TA + + D+ G + YI+KP + +K I Sbjct: 61 FDLCKIIRKKHHY---PIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 223 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEIS 60 ++KV+++ED E + + +E +GY L NG LE + +I++DI L +IS Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+E S+ +PV+ +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117 Query: 121 GE 122 Sbjct: 118 AR 119 >gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] Length = 1272 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 71/121 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDNE+N ++ +++ G NG EA++ + D ++MD+Q+ + G Sbjct: 907 ARVLLVEDNEINQEVAMEILAAGGVTVSLAANGREAVDAVGMNHFDAVLMDLQMPVMDGY 966 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I++D +++P+IA+TA AM D ++ R G A+I+KPI + T+ ++I Sbjct: 967 TATRTIRQDVRFKDLPIIAMTAHAMADDPDKSRHAGMNAHITKPIDPEVLYSTLAEWISA 1026 Query: 123 A 123 A Sbjct: 1027 A 1027 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 69/124 (55%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----HKPDVIIMDIQLQEI 59 K ++V+DN + ++F+ ++E + +G E LE + D+++MD +L I Sbjct: 757 KALVVDDNATSREIFQSMLECFSFDVTLAASGEEGLEEIGKSVGGRPYDIVVMDWKLPGI 816 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G+E +K+IK+++ L IP VI V+A+A + R G + ++ KPI+ S+ +TI Sbjct: 817 DGIEASKRIKKNTGLTRIPLVILVSAYAREEIMWRAEAAGLDGFLIKPINASVMFDTIMN 876 Query: 119 YIGE 122 + + Sbjct: 877 ALAK 880 >gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] Length = 222 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ + + ++G+ +G A +L + ++++D+ L +SGLE Sbjct: 2 RILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESYSLVVLDVSLPRLSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q+++ QEIPV+ +TA + D + G + Y++KP L+ I+ + + Sbjct: 62 VLAQMRK--RGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRS 119 >gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + ++ G + ++G++AL L H +IIMDI + ++ G++ Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + Y++KP ++ + +K + Sbjct: 65 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|229586486|ref|YP_002844987.1| response regulator PleD [Rickettsia africae ESF-5] gi|228021536|gb|ACP53244.1| Regulatory components of sensory transduction system [Rickettsia africae ESF-5] Length = 450 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D+I++D+ + E+ G Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 67.5 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRGKAEINGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270 >gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ ++ L+E+ GY NG + L R PD++++D+ L + G+ Sbjct: 2 RILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLPGLDGVS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E+S ++P+I ++A D + G + Y++KP S+ + +K + Sbjct: 62 VCRLLREES---DVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRR 117 >gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] Length = 222 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ + + +SG+ +G A +L + + +++++D+ L +SGLE Sbjct: 2 RILLVEDHDELSLWLQKALSSSGFAVDLASDGAIADQLLQTERYELVVLDVSLPRMSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q+++ QE PV+ +TA + D + G + Y++KP ++ ++ + + Sbjct: 62 VLAQMRK--RHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLRRS 119 >gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] Length = 243 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGIT--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] Length = 859 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN D++ ++G+ + NG EALE +P+VI+ D+ + E+ G E Sbjct: 474 RVLVVEDNPDMRSYLADIL-SAGHEIVLATNGREALESIAAKRPNVIVSDVMMPEMDGFE 532 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY--IG 121 + +++K D L++IPV+ +TA A + G + Y+SKP ++ + Sbjct: 533 LVRRLKGDPALRDIPVLLLTARASGAEAVGGLDVGADEYMSKPFDPLELRARVRAAERLH 592 Query: 122 EA 123 A Sbjct: 593 RA 594 >gi|153870039|ref|ZP_01999521.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] gi|152073492|gb|EDN70476.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS] Length = 268 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N +E+ + NG EAL +H D+++MDI + E+ G Sbjct: 148 KKVLLVDDDVRNTFALMTFLESKNMEVIVAENGKEALAALEEHPNIDIVLMDIMMPEMDG 207 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +I+E ++P+IA+TA AMKGD+ + + G Y++KP+ + I+ ++ Sbjct: 208 YEAIHEIREQPRFHKLPIIAITAKAMKGDKVKCIEAGASDYLAKPVDTDKLVSLIRVWL 266 Score = 50.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 44/83 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V DNE + + ++++ AL+ + D +I+D+ +++ SG Sbjct: 1 MKDLLVVADNEEHQQNILKVVKSEQVKTQVITTLERALQEVQLADFDCLILDVDIEQQSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTA 84 ++ +Q+++ L +IP+I T Sbjct: 61 IKFLEQLQQQEHLSQIPIIIYTG 83 >gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1472 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1216 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1274 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + +GE Sbjct: 1275 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLGE 1333 >gi|320101577|ref|YP_004177168.1| winged helix family two component transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319748859|gb|ADV60619.1| two component transcriptional regulator, winged helix family [Isosphaera pallida ATCC 43644] Length = 236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 68/123 (55%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++++D +++ +E G+ + +G + L A+ PD+I++D+ L Sbjct: 1 MSKPRILVIDDERSLVEVLAINLEREGFEVMTAFDGQDGLRQAQVKLPDLIVLDLMLPVK 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++++ DS +++PVI +TA + DE G + Y+SKP + + ++ IK Sbjct: 61 PGLEVCRELRADSRTRDVPVIMLTAKTEETDELVGFAMGADDYVSKPYRMKVLIQRIKTQ 120 Query: 120 IGE 122 + Sbjct: 121 LNR 123 >gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185] gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V+IV+D+ ++ ++ GY +G AL R KPD++++D+ L + Sbjct: 1 MMNRVLIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVMLPGKN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G+E+ + I+ +S ++P++ +TA D + G + Y++KP + Sbjct: 61 GVEVCRAIRAES---DVPIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAE 108 >gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 239 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + IV+D+ L ++ GY N L ++ D++++DI + GL Sbjct: 6 HIAIVDDHRDIRDLVGKYLQKHGYRTSLAENAAAFRRLLDRNAIDLVVLDIMMPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E S +PVI +TA + D + G + Y++KP + + IK + Sbjct: 66 LCRYLRESS---TVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVLRR 121 >gi|237734182|ref|ZP_04564663.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|229382742|gb|EEO32833.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 218 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED + +L + + +GY +G A+EL ++ D+I++DI L EI+G Sbjct: 1 MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ IPVI +TA D + K G E YI KP + + ++ + Sbjct: 61 YELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676] gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|219854352|ref|YP_002471474.1| hypothetical protein CKR_1009 [Clostridium kluyveri NBRC 12016] gi|219568076|dbj|BAH06060.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 657 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 48/120 (40%), Positives = 79/120 (65%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDNE+NM++ +++ GY L NG +AL++ D+I+MDIQ+ E++GL Sbjct: 538 KNILIVEDNEINMQIACGMLKKLGYNFLSAYNGNQALKILETMSVDLILMDIQMPELNGL 597 Query: 63 EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E TK I+++ E +P+IA+TA+AM GD E +GG + YISKP + I +++++ Sbjct: 598 ETTKIIRKNELHEKCHMPIIAMTAYAMPGDRELCIEGGMDDYISKPFDIYILKNILQRFL 657 >gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 652 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED+ + + + YI +G + A+ D+I+MD+ L + G+ Sbjct: 2 KILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++P++ +TA K D G + Y++KP+ L+ ++ + Sbjct: 62 LCRRLRAQG--SQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRR 118 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 64/118 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + ++ L++ G N +E + +PD++I+D+++ + SG+E+ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ D E Q +P+I +TA + +++ G + +++KP+ + + I + Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499 >gi|170741015|ref|YP_001769670.1| response regulator receiver protein [Methylobacterium sp. 4-46] gi|168195289|gb|ACA17236.1| response regulator receiver protein [Methylobacterium sp. 4-46] Length = 128 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 70/122 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VEDNELN + ++ SG+ L +G +A++ A PD+I+MD+ L + G Sbjct: 1 MTRVLLVEDNELNRDMLSRRLKRSGFEVLFAEDGQQAVDTAAAEMPDLILMDLSLPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ ++ + + + VIA+T+ AM GD ER GC+ Y +KP+ L + + + Sbjct: 61 FEATRALRANEKTAGLRVIALTSHAMSGDRERALAAGCDDYDTKPVDLPRLLGKMHALLD 120 Query: 122 EA 123 A Sbjct: 121 PA 122 >gi|153953733|ref|YP_001394498.1| sensor protein [Clostridium kluyveri DSM 555] gi|146346614|gb|EDK33150.1| Predicted sensor protein [Clostridium kluyveri DSM 555] Length = 652 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 48/120 (40%), Positives = 79/120 (65%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDNE+NM++ +++ GY L NG +AL++ D+I+MDIQ+ E++GL Sbjct: 533 KNILIVEDNEINMQIACGMLKKLGYNFLSAYNGNQALKILETMSVDLILMDIQMPELNGL 592 Query: 63 EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E TK I+++ E +P+IA+TA+AM GD E +GG + YISKP + I +++++ Sbjct: 593 ETTKIIRKNELHEKCHMPIIAMTAYAMPGDRELCIEGGMDDYISKPFDIYILKNILQRFL 652 >gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249] gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D+ G + +I KP S + + + Sbjct: 61 GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 237 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ +L + + GY +G + + + Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I ++A + + + G + Y++KP S+ + +K Sbjct: 65 EICR--RARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRR 122 >gi|260171767|ref|ZP_05758179.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315920080|ref|ZP_07916320.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693955|gb|EFS30790.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1511 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALKYLPDIIISDVMMPEKDGIEMT 1296 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351 >gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + ++ G+ + +G + LA + D+II+D+ L + +GL Sbjct: 2 KILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGLV 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ +TA D+ R G + Y++KP + + ++ + Sbjct: 62 VCRELRASGV--STPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRR 118 >gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium] gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium] gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium] gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium] gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613] gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679] gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis] gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis] gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium] gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium] gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium] gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium] gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium] gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus] gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis] gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium] gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium] gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium] gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium] gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium] gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium] gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium] gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium] gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613] gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679] gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis] gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis] gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis] gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis] gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium] gi|383762|prf||1904198A vanR gene Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D L ++ Y + EALE + + D+ I+DI L S Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +T + D+ G + YI+KP + +K + Sbjct: 61 GLTICQKIRDKHTY---PIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB 48] Length = 1152 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 73/126 (57%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR------QHKPDVIIMDIQL 56 +++++VED+ N+ ++ E G + RNG EAL+ + D+++MD+ + Sbjct: 1027 RRLLVVEDDVRNVYAVTNIFEPLGAVVQIARNGREALDALEVAQASAETAIDLVLMDVMM 1086 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ GL T++I++ E +++PVI +TA AMK D+ER + G Y++KP+ + + + Sbjct: 1087 PEMDGLTATREIRKRPEWKKLPVIMLTAKAMKDDQERCLEAGANDYMAKPLDVEKLVSLV 1146 Query: 117 KKYIGE 122 + ++ Sbjct: 1147 RVWVPR 1152 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Query: 3 KKVMI-VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++ VED+ ++ +L + G+ L +A+ + RQ+ P +++D+ L + SG Sbjct: 758 KRLLLAVEDDPSFARILYELAQDLGFQCLIASTAEDAMLMVRQYVPSAVVLDLGLPDHSG 817 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME------- 114 L + ++K D + + IPV V+A G Y+ KP+ +E Sbjct: 818 LSVLDRLKRDPKTRHIPVHVVSAND---YMHAALSMGAIGYMLKPVKRDELVEAFTQLET 874 Query: 115 TIKKYIGE 122 ++K + Sbjct: 875 RLEKRMRR 882 Score = 74.4 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+IVED+ + L++T + E L + D +++D+ L + SG Sbjct: 880 MRRVLIVEDDAVQRDSVMALLKTQDVETVAVGTAAECLAELKAQTYDCMVLDLSLPDASG 939 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRK 96 + + + + + PVI T DE+++R+ Sbjct: 940 YSLLETLSTEQDYAFPPVIVYTGRDISAADEQKLRR 975 >gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H D+ ++D+ L I G Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 64 FQVCKSIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W] gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|209528218|ref|ZP_03276685.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491340|gb|EDZ91728.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 372 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D+ N+ L ++ GY +G AL+ + P ++++D+ + I G E+ Sbjct: 15 ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ + L IP++ +TA G + +I KP+ + + ++ + Sbjct: 75 TRRIRNNPNLPFIPILLITAHDQSS-VVEGLDAGADDFIRKPVEIDELLARVRSLLR 130 >gi|254464929|ref|ZP_05078340.1| response regulator receiver modulated serine phosphatase [Rhodobacterales bacterium Y4I] gi|206685837|gb|EDZ46319.1| response regulator receiver modulated serine phosphatase [Rhodobacterales bacterium Y4I] Length = 417 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ L ++ ++ G+ ++ +G A+E+ + PD+I+ D + ++GL Sbjct: 13 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICQAETPDLILSDWMMPGMNGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119 E + + S I +T+ + K + G + +++KP+S I ++ Sbjct: 73 EFCRAFRSRSSEDYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 132 Query: 120 IG 121 + Sbjct: 133 LR 134 >gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ ++ R + +GY+ +G +E A D+I++D+ L E+ GL Sbjct: 2 RILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + + PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 62 VLRQLR--GQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRR 118 >gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ V+IV+D + L ++ S +G EA ++ + K D++++D+ + Sbjct: 1 MMTTVLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVMMPHED 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+ S +P+I +TA D+ + G + YI KP + I + Sbjct: 61 GFVVCQSIRAMS---NVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|167622661|ref|YP_001672955.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella halifaxensis HAW-EB4] gi|167352683|gb|ABZ75296.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella halifaxensis HAW-EB4] Length = 339 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ Y +G +AL LA + PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILVGILGGD-YRVKVAIDGPKALALASKTTPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K++K++ IPVI VTA + DE + + G YI+KP+S + +K ++ Sbjct: 63 EVCKRLKQEPLTCHIPVIFVTALSDVADETQGFELGAVDYITKPVSAPVVKARVKTHL 120 >gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1331 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 68/115 (59%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 222 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED+ L+R ++E +G+ + NG +AL+ + ++II DI + ++ G Sbjct: 1 MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ S + PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 224 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 ++KV+++ED E + + +E +GY L NG LE +K +I++DI L +IS Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+E S+ +PV+ +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117 Query: 121 GE 122 Sbjct: 118 SR 119 >gi|238792322|ref|ZP_04635956.1| Response regulator receiver modulated diguanylate cyclase [Yersinia intermedia ATCC 29909] gi|238728248|gb|EEQ19768.1| Response regulator receiver modulated diguanylate cyclase [Yersinia intermedia ATCC 29909] Length = 309 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +N+++ + Y NG +AL++ PD+I++DI++ +SG E Sbjct: 12 KILIVDDHPINIQMLYQAFSSD-YHVCMATNGKQALDVCISQHPDLILLDIEMPGMSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K + Q+IPVI VTA + E R G +ISKPI+ + +K ++ Sbjct: 71 VCARLKASPDTQDIPVIFVTAHIDEETETRCFSEGAVDFISKPINRNTVRARVKTHL 127 >gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED+E K+ ++ + +GY + +G+E + +H D++++D+ L +I G Sbjct: 1 MYQILVIEDDEDIQKILKNYLCGNGYGVVLAGDGVEGIHKFHEHTCDLVLLDVMLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+ +SE +PV+ +TA + + R + YI+KP S+ + + I + Sbjct: 61 FGVLELIRRESE---VPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|116253196|ref|YP_769034.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257844|emb|CAK08942.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ L + +G+ +G EA D+IIMD+ + SG+ Sbjct: 12 AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T+ ++ ++ +P+I +TA A G+ + G + Y+SKP + I + Sbjct: 72 EVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 223 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ GY R+G + L LA + DVI++D+ + ++ G E+ Sbjct: 3 ILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVMMPKMDGWEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++++ + PV+ +TA D + + G + Y+ KP S + + ++ Sbjct: 63 LRRLRKET---DTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRR 117 >gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] Length = 1331 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 68/115 (59%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109 Score = 98.7 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + + G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLD-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE Q D++++D+ L + G Sbjct: 36 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDG 95 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 96 LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 153 Query: 122 E 122 Sbjct: 154 R 154 >gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 260 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE Q D++++D+ L + G Sbjct: 36 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDG 95 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 96 LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 153 Query: 122 E 122 Sbjct: 154 R 154 >gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 244 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L D + G +G + E A + ++++D+ L ISG Sbjct: 1 MHRILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVMLPGISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ +PV+ +TA D + G + Y+SKP + + I+ Sbjct: 61 FEVLRRIRA---GSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 237 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ VED+++ + + +E G+ +G+E LE R +PD+ ++D+ + + G+ Sbjct: 5 HVLFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRADRPDIALLDVMVPGLDGVS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP ++ + I+ + Sbjct: 65 LCRRIRDES---TVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120 >gi|209525668|ref|ZP_03274205.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209493837|gb|EDZ94155.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 592 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ L +++ GY + NG AL + +PD+I++DI + + G ++ Sbjct: 8 ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMALMAVKTVQPDLILLDIMMPGMDGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + L ++PVI ++A D+ + G YI+KP + + ++ ++ Sbjct: 68 CKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHL 123 >gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + IP++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAEGHT--IPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827] gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827] Length = 239 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D+ L + G+ N + + + +I++D+ L G Sbjct: 4 SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ + IP+I VTA + D + G + YI KP + + I+ + Sbjct: 64 LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + ++ G + ++G++AL L H +IIMDI + ++ G+ Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIN 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + Y++KP ++ + +K + Sbjct: 65 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae TIGR4] gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54] gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974] gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2] gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae] gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54] gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375] gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301] gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317] gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALEL ++ D+II D+ + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ E P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L ++ G+ + +G E L++AR+ +PD I+D+ + + G E Sbjct: 10 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + + PV+ +TA + G + Y++KP SL + ++ + Sbjct: 70 LLTKLRAEGL--DGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +L +E GY +G EAL D I+DI + +G E Sbjct: 2 RILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ +E PV+ +TA D G + Y+ KP + I+ + Sbjct: 62 VLKRLRSLG--KETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRK 118 >gi|224367373|ref|YP_002601536.1| putative two-component response regulator receiver protein (phosphoserine phosphatase) [Desulfobacterium autotrophicum HRM2] gi|223690089|gb|ACN13372.1| putative two-component response regulator receiver protein (phosphoserine phosphatase) [Desulfobacterium autotrophicum HRM2] Length = 373 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 56/117 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN +N+K + GY + NG A +A KPD+I++DIQ+ G E Sbjct: 8 TILVVDDNLVNLKFMEMTLSKEGYRVITADNGTSAKTIAVAEKPDLILLDIQMPGGDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +KE IPVI +T + + G Y++KP + + ++ Sbjct: 68 VIRFLKETPGTCTIPVIFLTNMTDVDSKLKGFDLGAVDYVTKPFHPLEVLARVATHL 124 >gi|119488980|ref|ZP_01621915.1| Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] gi|119454936|gb|EAW36079.1| Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation [Lyngbya sp. PCC 8106] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED+E +L+ Y + +G + LELA++ +PD+II DI + G Sbjct: 1 MKKILVIEDDEPIRMSILELLMIEQYQGIGAEDGYQGLELAKEVQPDLIICDIMMPGFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++++S IP I +TA + D+ + G + YI+KP + + +E +K + Sbjct: 61 YAVLNELQQESGTANIPFIFLTAKTERHDQRMGMELGADDYITKPFTTTELLEAVKTRL 119 >gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I++D+ K+ RD + +G + LE + D+II+D+ L + +GL Sbjct: 4 KKILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKINNLEIDIIILDLMLPKKNGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I +Q+K +IP+I ++A + D + + G + Y++KP S + +K + Sbjct: 64 DICRQLK---PHNKIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKR 120 >gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8] gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8] Length = 931 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 2/115 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N KL + L+E G+ NG EAL + D+++MD+Q+ E+ GLE Sbjct: 684 ILLAEDNAINQKLAKRLLEKRGHKVSVAENGKEALAALEKSSFDLVLMDVQMPEMDGLEA 743 Query: 65 TKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T+ ++E +L PV+A+TA AMKGD+ER + G + Y+SKPIS ++ Sbjct: 744 TRTLREREKLTGFHCPVVAMTALAMKGDQERCLEAGMDGYLSKPISSQALDAMLE 798 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 KV+IV+DN N ++ L+ G + G EAL D+++ D+Q+ Sbjct: 533 KVLIVDDNRTNRRILEGLLTRWGMVPTVVSGGEEALAKLHAAVQSGVPYDLVLTDMQMPN 592 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + + IK+ +++ ++ +T+ + +GD R + G AY+ KP+ + I + Sbjct: 593 MDGFGLVENIKQKADISTATIMMLTSGSKRGDTARCAELGIAAYLLKPVRQVELRQAILR 652 Query: 119 YI 120 + Sbjct: 653 VL 654 >gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|218261685|ref|ZP_03476420.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM 18315] gi|218223865|gb|EEC96515.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM 18315] Length = 1304 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 57/117 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 VMIVED +D + S +G +ALE+ + PD+++ D+ + ++G E Sbjct: 1055 TVMIVEDEPELRNYLKDELSGSFKEVYVAEDGRQALEMIQAKLPDLVVSDVMMPYMNGFE 1114 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D + IPVI +TA + K G + Y+ KP L + ++ + Sbjct: 1115 LCRRIKSDVGISHIPVILLTARTDNESTVQGYKLGADMYVPKPFDLGFLLAVLRNQL 1171 >gi|160886890|ref|ZP_02067893.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483] gi|156107301|gb|EDO09046.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483] Length = 1511 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALKYLPDIIISDVMMPEKDGIEMT 1296 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351 >gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis H37Rv] gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 02_1987] gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 94_M4241A] gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T92] gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis 210] gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN R506] gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN V2475] gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium tuberculosis H37Rv] gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis W-148] gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] Length = 253 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + G+ +G A+ D +++D+ L I G E Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 84 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D+ ++ +++ G +G +A+ R +PD++++D+ L Sbjct: 1 MRGRVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLPGTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +QI+ +S +P++ +TA + D + G + Y+ KP + ++ + Sbjct: 61 GMEVCRQIRAESG---VPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARL 117 Query: 121 GEA 123 A Sbjct: 118 RSA 120 >gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ VED+++ + + +E G+ +G+ L+ R +PD+ ++D+ L + G+ Sbjct: 5 HVLFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQRPDIALLDVMLPGMDGVS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP S+ M I+ + Sbjct: 65 LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLRR 120 >gi|323136350|ref|ZP_08071432.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322398424|gb|EFY00944.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 256 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D++ L + GY+ N EA E R D+I++D+ + SG Sbjct: 21 AHILVVDDDKRIRTLLSRYLANEGYLVSSAANAQEASERLRDLAFDLIVLDVMMPGESGK 80 Query: 63 EITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++E E Q P++ +TA A D + G + Y++KP I + Sbjct: 81 QFAARLRESGEPQASAPILMLTALAETADRVEGLEAGVDDYLAKPFDPRELSLRIASILR 140 Query: 122 EA 123 + Sbjct: 141 RS 142 >gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii NCTC 11218] Length = 1268 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 64/112 (57%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VEDN N + +L+ G ++ +G+EAL Q + +++MD+Q+ ++ G E T++ Sbjct: 930 VEDNPTNRLVATELLSQQGATIVEAESGVEALAALDQQEFSLVLMDVQMPDMDGYETTRR 989 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 I++ + ++P++A+TA AM D+ G +I+KP + +E I +Y Sbjct: 990 IRQMAHFADLPILAMTANAMPEDKVACLNAGMNDHIAKPFHIGEVVEKILQY 1041 Score = 84.8 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 16/124 (12%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 V+IVEDN +F DL++ G + AL+ Q D++ +D +L + Sbjct: 779 VLIVEDNNTARLIFDDLLQRLGCHVTAVADAEHALDTIEQADANGQPFDLLFIDWKLPGM 838 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMK------GDEERIRKGGCEAYISKPISLSIF 112 GL +T+ ++ L + P V+ TAF + + + + +A + KP++ + Sbjct: 839 DGLSLTQSVRHGMALSKTPLVVMATAFGRELLDEHLEETQSLL----DALLVKPVTPDMV 894 Query: 113 METI 116 T+ Sbjct: 895 KNTL 898 >gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1146 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 K V++V+D+ N+ +++ G +G+EALE + K D+++MDI + + G Sbjct: 1027 KTVLLVDDDMRNIFSISAVLDQCGLKVEIANDGVEALERLEELQKVDIVLMDIMMPRMDG 1086 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+++ E + +P+IA+TA AMK D E+ G YI+KPI + +K +I Sbjct: 1087 YETMENIRKNIEWKNLPIIALTAKAMKDDREKCISAGANDYITKPIDNDQLISIMKIWI 1145 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ + L +D E G+ +Q +G + H PD I++D+ L I G + Sbjct: 762 LIVEDDVVFNDLLKDYAEKGGFDTVQYYSGEGVVHEIENHLPDAILLDVMLPGIDGWHVL 821 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+IK + + IPV ++A D+ + +K G +++ KP+ S + K Y+ Sbjct: 822 KEIKNNQNIAHIPVHIMSA-GDFSDK-KAQKEGAISFLKKPLDYSELDKIFKNYLNR 876 Score = 86.7 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++VED + + L + +Q +G EAL D +I+D+ L +I+G+ Sbjct: 883 RKVLLVEDQKDQSDALKALFKDKNIDVVQALSGKEALSALNNESFDCVILDLNLPDINGM 942 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ QIKE +++PVI TA ++ D+ + Sbjct: 943 DLLAQIKEKD--KKVPVIINTAMELEPDKLK 971 >gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 226 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED + ++ G+ G +AL + D++++D+ L +SG Sbjct: 1 MTRVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ +P+I V+A + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCRQLRQ---TSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++ ED+ L R +E G+ +G A+ + +PD++++D+ + +S Sbjct: 1 MCAHVLVAEDDVNQADLIRRYLEHEGHFVRVVHDGRAAVAAHHRDRPDLVVLDVMMPVMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+ + ++ +S ++ V+ +TA + + D G + Y++KP S M ++ + Sbjct: 61 GLDACRALRAES---DVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 236 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I+ Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIPGIN 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 71 GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 K+M+V+D KL +D ++ + ++ +G EAL++ + +II D+ + +I+G Sbjct: 5 KIMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDKSISLIICDVMMPKINGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+I++ ++P+I +TA + DE G + YISKP S I + ++ + Sbjct: 65 DVVKEIRQ---YSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|190344318|gb|EDK35970.2| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC 6260] Length = 665 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ EDN +N KL ++E G+ NG+EA E ++ K DV++MD+Q+ + G Sbjct: 409 SYKILLAEDNLVNQKLAVRILEKQGHRVEVVENGLEAFEAIQKSKYDVVLMDVQMPVMGG 468 Query: 62 LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 E T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M Sbjct: 469 FEATEKIRQWEKRSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 528 Query: 114 ETIKKYI 120 +TI K I Sbjct: 529 QTISKCI 535 >gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+ G+ + +G AL +++ D++++D+ L +SG Sbjct: 1 MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKELRS---VSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRTRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|157825448|ref|YP_001493168.1| response regulator PleD [Rickettsia akari str. Hartford] gi|157799406|gb|ABV74660.1| response regulator PleD [Rickettsia akari str. Hartford] Length = 450 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D +++D+ + E+ G Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDTVLLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK + E +PV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 FEVCKTIKTNPETTHVPVVMVTALSDVDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 69.4 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVIQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDLVIISSTLENEDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ E++ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRGKEEIRGVVIILQIDEDGMPLVVKGIELGVNDYFVYPIEESELLARIRTQLRR 270 >gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + GYI L+ +G EAL++ +K +I++D+ + ++ G Sbjct: 5 KILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPKMDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I++ ++PV+ +TA + + DE K G + YI+KP S I + ++ + Sbjct: 65 EVLEAIRQ---YSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRR 121 >gi|295116020|emb|CBL36867.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 208 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ ED ++ ++ G+ R+G EAL+ DV+I+DI + I GL Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ PV+ +TA D G + Y++KP + I+ + Sbjct: 62 VLRTLRSRGNTA--PVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118 >gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601] gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D++ + L + ++ GY Q NG EA E+ + P ++I+D+ + E+ G Sbjct: 1 MTSILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+++ ++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 LEVCKKMRNENIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|224538289|ref|ZP_03678828.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM 14838] gi|224520074|gb|EEF89179.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM 14838] Length = 1438 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN D++ + Y + NG E LE A Q+ PD II D+ + + GL++ Sbjct: 1177 VLVVEDNTELRNFLNDILSGT-YKVFEATNGQEGLEQALQYVPDFIISDVMMPVMDGLDM 1235 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IK ++ IP+I ++A + D + G + YI+KP S + IK + Sbjct: 1236 VKAIKAHRDVCHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSSTYLKTRIKSLL 1291 >gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 312 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ + D +E SG+ L +G AL + + PD+I++D + + G E Sbjct: 11 ILLVDDSPEALGFLTDALEQSGFSVLIATSGQGALGIVERISPDLILLDAVMPGMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIK + + ++PVI +T + + G Y++KPI++ I+ ++ A Sbjct: 71 CRQIKANPAVAQVPVIFMTGLSETEHVVHALEVGGVDYLTKPINIDELRARIRVHLANA 129 >gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium spinosum DSM 4136] Length = 226 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + ++ +GY+ +G E L+ R D+I++D+ L G Sbjct: 2 RILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGWH 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ +E E PV+ +TA D R + G + Y+ KP + + F+ ++ + + Sbjct: 62 VLEHLR--TEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRS 119 >gi|108758870|ref|YP_628999.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|58803053|gb|AAW82652.1| RodK [Myxococcus xanthus DK 1622] gi|108462750|gb|ABF87935.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 981 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ VED+ N + R + + ++ +G LE A + PD+I+MD+ L + G Sbjct: 860 ARILYVEDSAQNRDIVRRYLNGH-FEVIEAEDGEHGLERAIRDAPDLILMDLSLPRLDGW 918 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T++++ +PVIAVTA A + +++ GC AY++KP+ +E I+K++G Sbjct: 919 EVTRRLRALPAAANVPVIAVTAHAGREYQDKAHAAGCTAYLTKPLDRDQLLEMIRKHLGR 978 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ L +L +E +G+ + +G+ AL+ AR+ +P I++DI L ++ G Sbjct: 608 TVLVVDDDPLIQQLVAGQLEPAGFKVVVAEDGIAALKRARELRPQAILLDIHLPKLDGWS 667 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q+K + L IPVI ++ ++ R G Y+ KP+ +E +++ + ++ Sbjct: 668 VLSQLKSEPSLAGIPVILIS---VEEQRARGFSLGACEYLVKPVEPDRLVEVVQRSLHQS 724 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ +L + +G+ + R+G +AL AR P ++++D+ + + G E+ Sbjct: 734 VLVVDDDSATRELVSRNLRRAGFSTSEARSGEDALLKARVSPPALVVLDLMMPNLDGFEV 793 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++++ + ++PV+ +T + +EE + + G ++ K Sbjct: 794 LRRLRAEKL--QVPVVVLTGKTLSAEEEALLRDGFAGFVKK 832 >gi|323138820|ref|ZP_08073884.1| response regulator receiver protein [Methylocystis sp. ATCC 49242] gi|322395968|gb|EFX98505.1| response regulator receiver protein [Methylocystis sp. ATCC 49242] Length = 124 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 77/122 (63%), Positives = 107/122 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E +G+ L+T++G+EA+ LAR+H PD+I+MDIQL E+S Sbjct: 1 MTKTVLIVEDNELNMKLFNDLLEANGHATLRTKSGVEAIALAREHHPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ +K+D EL++IPVIA+TAFAMKGDEE+IR+GGCEAY+SKPIS++ F+ET+ ++ Sbjct: 61 GLEVTRWLKDDEELRDIPVIAITAFAMKGDEEKIRQGGCEAYLSKPISVAKFLETVNSFL 120 Query: 121 GE 122 + Sbjct: 121 AD 122 >gi|317473767|ref|ZP_07933048.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316910024|gb|EFV31697.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1359 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN+ + R + Y NG AL + +++ PD+II DI + E+ G E Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122 + + +K D IP+I +TA + + G + YI KP ++ I TI + Sbjct: 1155 LCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLANR 1214 Query: 123 A 123 A Sbjct: 1215 A 1215 >gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + LEL R+ +PD++++D+ L I G E+ Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 64 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 65 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118 >gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4] gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 241 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQMGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED+ KL RD +E G+ +G+E L+ + + D++I+DI L ++ G Sbjct: 1 MKKILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIMLPKLHG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K I+++ ++ PV+ V+A + D+ + G + YI+KP S + ++ +I Sbjct: 61 YNVMKSIQDE---KDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHI 116 >gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + LEL R+ +PD++++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273] gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273] Length = 247 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++ +E G+ NG EALE+ + + I+D+ + ++ G+E+ Sbjct: 21 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E L P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 81 CRRIREKYSL---PIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 >gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +K + GY R+G+EA+ AR+ P V I+D+ + G E Sbjct: 16 RVLVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMPGPDGFE 75 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K + VI +TA D + GG + Y+ KP S + I + Sbjct: 76 VCRMLKSMG---NVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVR 130 >gi|163759327|ref|ZP_02166413.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283731|gb|EDQ34016.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 123 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 92/123 (74%), Positives = 111/123 (90%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+VMIVEDNELNMKLFRDLIE SGY +QTRNGM+A++LARQH+PD+I+MDIQL E+S Sbjct: 1 MTKQVMIVEDNELNMKLFRDLIEASGYKTVQTRNGMDAMDLARQHRPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D +L IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK ++ Sbjct: 61 GLEVTKWLKQDDDLHVIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPKFIETIKSFL 120 Query: 121 GEA 123 G+A Sbjct: 121 GDA 123 >gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1238 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+ N+ L++ G ++G+EA+ ++ D+I+MD+ + + G Sbjct: 1109 KRILLVDDDVRNVYALTALLDEVGLCVSSAKDGLEAIASYQRDPFDLILMDMAMPNMDGY 1168 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ +K+ IP+IA+TA AMKGD E+ G + Y++KPI + +++++G Sbjct: 1169 TATRLLKQ-EHGCVIPIIALTAHAMKGDREKCITAGADDYMAKPIKRDELLALLERWLG 1226 Score = 80.6 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 50/114 (43%), Gaps = 12/114 (10%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ + + G+ ++ R G++AL L +Q + +I+DI L ++SG ++ Sbjct: 855 LIIEDDVNFASVIAEEAHAHGFSSVHCRTGLQALGLLQQESFNAVILDILLPDLSGWQLF 914 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMET 115 ++++ + PV ++ G Y+ KPI + Sbjct: 915 RRLRAQPTHRHTPVHIISCVPQP--------VGWNDDGTRYLVKPIGRDDLEQV 960 Score = 63.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 37/82 (45%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED E+ + +R + G+ + +G +A Q + +++D+ L + G + Sbjct: 974 VLLVEDVEVEREHYRKQLTELGFQVVACADGEQARAAYAQGQFCALVIDLDLPDQDGFAL 1033 Query: 65 TKQIKEDSELQEIPVIAVTAFA 86 + + LQ V+ T Sbjct: 1034 LDSLNQLRPLQGTRVVINTGVD 1055 >gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] Length = 243 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ + PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGI--DAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+ G+ NG++A+ + D++++D+QL SG Sbjct: 1 MSRILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQLPGQSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ S PVI +TA + D+ + G + Y++KP S + ++ + Sbjct: 61 TEVCRQLRARSSA---PVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|160892046|ref|ZP_02073049.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492] gi|156858524|gb|EDO51955.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492] Length = 1355 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN + + ++ + Y LQ NG E L LA ++ P++I+ DI + E+ G+ + Sbjct: 1095 LVVEDNADIREYIANELQDT-YKILQANNGKEGLILALRYTPNIIVSDIMMPEMDGIAMC 1153 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKE+ IPVI +TA D+E G ++Y++KP S + IK + Sbjct: 1154 KGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLL 1208 >gi|150004703|ref|YP_001299447.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149933127|gb|ABR39825.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1355 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN + + ++ + Y LQ NG E L LA ++ P++I+ DI + E+ G+ + Sbjct: 1095 LVVEDNADIREYIANELQDT-YKILQANNGKEGLILALRYTPNIIVSDIMMPEMDGIAMC 1153 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKE+ IPVI +TA D+E G ++Y++KP S + IK + Sbjct: 1154 KGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLL 1208 >gi|86607342|ref|YP_476105.1| response regulator [Synechococcus sp. JA-3-3Ab] gi|86555884|gb|ABD00842.1| response regulator [Synechococcus sp. JA-3-3Ab] Length = 128 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 69/121 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+DN ++ L+ SG +G+EA+++ RQ KPDV+++DI + ++G Sbjct: 1 MSKVLVVDDNRTYLEAISSLLSESGLEVSTAMDGVEAMDIIRQQKPDVVVLDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K+D + I ++ + D E ++ +AY++KP + TIK+ + Sbjct: 61 YEVCREVKKDESTKHIRIVVCSTKDQVFDIEWAKRNQADAYVTKPFKPQELLATIKQQLR 120 Query: 122 E 122 E Sbjct: 121 E 121 >gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 1263 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 8/128 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD----VIIMDIQLQEI 59 ++++VEDN++N ++ + ++E G A NG+EAL + D +++MD Q+ E+ Sbjct: 994 RLLLVEDNQINQEVAQLMLEEMGLPADVAGNGLEALAALQSAPEDAPYNLVLMDCQMPEM 1053 Query: 60 SGLEITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G E T+QI+ + IP+IA+TA AMKGD E+ G + Y+SKPI+ E + Sbjct: 1054 DGYEATRQIRAGKAGERNRHIPIIAMTANAMKGDREKCLAAGMDDYLSKPINAGGLEEKL 1113 Query: 117 KKYI-GEA 123 K ++ + Sbjct: 1114 KLWLFRRS 1121 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 16/134 (11%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ----------HKPDVIIMDIQ 55 ++V+DN N ++ + G L+T +G EAL + D+ I+D+ Sbjct: 825 LVVDDNAANREVLCGQLRMWGAHVLETASGEEALAMCEAKINGSPAAFGRPFDIAILDMH 884 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + ++ G + +++K + + ++ +T+ +GD + G AY+ KP+S++ Sbjct: 885 MPQMDGAMLGRELKAKPAYRSMALVMMTSIGHRGDARYFAELGFSAYLPKPVSVAELSAV 944 Query: 116 IKKY------IGEA 123 + + +A Sbjct: 945 LSVVAEGGDALRQA 958 >gi|71905886|ref|YP_283473.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845507|gb|AAZ45003.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1066 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED +N ++ +L+ +G + NG EA+E R +++MD+Q+ + GL Sbjct: 946 RRVLLVEDEPINQEVAAELLSLAGLVVEVAVNGAEAVERVRHGTYALVLMDMQMPVMGGL 1005 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I++ +PV+A+TA A D + G +I KP+ + ++ +++ Sbjct: 1006 EATRLIRQLPGKAVLPVLAMTANAFDEDRQACLDAGMNDHIGKPVDPDLLYASLLRWL 1063 >gi|300868057|ref|ZP_07112695.1| response regulator receiver protein [Oscillatoria sp. PCC 6506] gi|300333977|emb|CBN57873.1| response regulator receiver protein [Oscillatoria sp. PCC 6506] Length = 141 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 69/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE+N + + G+ L +G E +E+AR PD+I+MD+ L + G Sbjct: 17 MAKILLVEDNEMNRDMLSRRLARKGHEVLIAVDGAEGVEMARSKVPDLILMDMSLPVLDG 76 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+QIK E IPVIA+TA AM GD E+ GC+ Y +KP+ + I+ + Sbjct: 77 WQATQQIKATPETNTIPVIALTAHAMAGDREKCLAAGCDDYDTKPVEFPRLLGKIEMLL 135 >gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1467 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN+ + + +E + +G+E L+ + PD+++ D + + G+E Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D ++ IPVI +TA + + G AYI KP S + I++ + E Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 >gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] Length = 243 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 17 ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 77 CRRIREK---YSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131 >gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium jeikeium K411] gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium jeikeium K411] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ R+ PDV+++D+ L E+ GLE Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGLPELDGLE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 74 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129 >gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297] gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297] Length = 1593 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 2/120 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 +++VED+ +N + ++ +G + NG +A++ H D I+MD+Q+ I GL Sbjct: 1250 ILVVEDSPINQLVVSQILSRNGASVVVKDNGEDAIDYLSNHPEAFDAILMDVQMPGIDGL 1309 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T++I+ + +IP+IA+TA A+ + ++ G +++KPI ++T++ ++G+ Sbjct: 1310 ETTQRIRNHLNMTDIPIIALTAGALVEERKKALDAGMNDFLTKPIEPERLIQTLRHHVGD 1369 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 17/128 (13%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHK----PDVIIMDIQLQE 58 +MI ED++ + + + + G+ + NG++ L R + PD +++D + E Sbjct: 1099 IMIAEDSKDDAQQLQKITRALGWRSSVVNNGVDMLADIRLRAEQNLRLPDAVLVDWNMPE 1158 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKG-----DEERIRKGGCEAYISKPISLSIF 112 + G E ++++E ++P VI V+A+ DE+ I +A++ KPI S Sbjct: 1159 LDGFETIRKMREMISKADLPAVIMVSAYEQLDPENPTDEKLI-----DAFLQKPIEPSAL 1213 Query: 113 METIKKYI 120 + + Sbjct: 1214 FNVVNTAV 1221 >gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1467 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN+ + + +E + +G+E L+ + PD+++ D + + G+E Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D ++ IPVI +TA + + G AYI KP S + I++ + E Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 >gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 226 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I+ Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|189464923|ref|ZP_03013708.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM 17393] gi|189437197|gb|EDV06182.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM 17393] Length = 1341 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN + + + Y + NG EALE ++ ++++ D+ + + G E Sbjct: 1096 TVLVVEDNPEMLAFIERQLSSQ-YAVVTATNGREALEALDRNFVNLVVSDVVMPLMDGFE 1154 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K IK + IPVI +TA + + G ++YI KP S + + I Sbjct: 1155 LCKTIKSNVGYSHIPVILLTAKTNIQSKIEGMELGADSYIEKPFSPEYLLAVVSNLI 1211 >gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus] gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus] gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + +L + G+ +G AL + DV ++D+ L +I Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +QI++ PV+ +TA D+ G + Y++KP + + +K + Sbjct: 61 GFQLLQQIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|58617050|ref|YP_196249.1| response regulator PleD [Ehrlichia ruminantium str. Gardel] gi|58416662|emb|CAI27775.1| Putative regulatory component of sensory transduction system [Ehrlichia ruminantium str. Gardel] Length = 461 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IV+D N+KL + + Y L NGM+A+++A++ PD+I++D+ + E+ Sbjct: 1 MTAKVLIVDDLAANIKLLQAKLVNEYYNVLTATNGMDAIQIAQEKHPDIILLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K++K D IPV+ VTA D G + +++KPI+ I+ Sbjct: 61 GFETCKRLKSDPTTIHIPVVMVTALDNTSDNRATGLSHGADDFLTKPINDIALFARIRSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 70.9 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +++ L + ++++ S + + N + L L+ D+II+D++ GL + Sbjct: 159 ILIADEDTLRSEHINNILQQSFQQTVVSHNIEQVLNLSNIENYDLIIIDLEFSG-DGLRL 217 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ E + P++ + D + G YI+ P+ + + + + Sbjct: 218 CSHLRNKIETRYTPILVL--LDENEDTKLLTKAFDIGIHDYITTPVDSNELIARVNVQVK 275 Query: 122 E 122 Sbjct: 276 R 276 >gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides BS1] Length = 993 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 75/122 (61%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E+N + +++ GY A +NG EAL + D+++MD Q+ E+ G E Sbjct: 731 RILLVEDSEVNQLVLLSMLQKEGYEADVVQNGTEALVALAKVHYDLVLMDCQMPEMDGYE 790 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ + E+P++A+TA AM GD ER + G + Y++KP+ +S F ++KY Sbjct: 791 ATRCIRRGQGNVMNPEVPIVAITANAMTGDRERCLQAGMDDYMAKPVRMSDFTAMLEKYS 850 Query: 121 GE 122 GE Sbjct: 851 GE 852 Score = 40.1 bits (94), Expect = 0.091, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 27/133 (20%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQEI 59 V+++E + + KL + + + ++ ++ PD+++ I L E Sbjct: 584 VLLIEPCQASRKLIKIFFSLWNSCFEEASDWESGVKKLQKAAESGVLPDIVL--IALPEE 641 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCE----------AYISKPISL 109 E+ ++ + L+ + VI +T+ G + A + KPI Sbjct: 642 RRDEVFEKFRTGDLLENVIVIGLTSAGR----------GADFQPDPLGKPDACLEKPIRG 691 Query: 110 SIFMETIKKYIGE 122 + + Sbjct: 692 KELYACVADLLKR 704 >gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ] gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ] Length = 226 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 4/124 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + ++++VED L D + + + A +G+ + L R+ D++I+D+ L Sbjct: 1 MSQGRILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLMLPGR 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL+I ++++ +PVI VTA + D + G + Y+ KP S + +K Sbjct: 61 DGLDICRELR---GFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARVKAV 117 Query: 120 IGEA 123 + + Sbjct: 118 LRRS 121 >gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1412 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGLE 63 V++V+D++ N+ ++E G LQ NG ALE + DVI+MD+ + E+ G Sbjct: 1293 VLVVDDDDRNLYAITGILELHGMRVLQAENGRAALETLAANPGIDVILMDVMMPEMDGYT 1352 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + +P+IAVTA AM GD E+ G Y++KP+ + I+ + Sbjct: 1353 ATAAIRAMPQHAALPIIAVTAKAMLGDREKSLGSGASDYVTKPVDAGELISRIEAQL 1409 >gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 11 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 70 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 71 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124 >gi|284050982|ref|ZP_06381192.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira platensis str. Paraca] Length = 592 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ L +++ GY + NG AL + +PD+I++DI + + G ++ Sbjct: 8 ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMALMAVKTVQPDLILLDIMMPGMDGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + L ++PVI ++A D+ + G YI+KP + + ++ ++ Sbjct: 68 CKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHL 123 >gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 247 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED L D + +GY A + +G E R +PD++++DI L G Sbjct: 21 AHILVVEDEPKMAALLIDYLHAAGYRADRLADGREVAAFVRGRQPDLVLLDIMLPGRDGF 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PISLSIFMETIKKYIG 121 E+ ++++ ++P+I +TA A + D G + YI K P S + +K + Sbjct: 81 EVCRELR---GFSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILR 137 Query: 122 EA 123 + Sbjct: 138 RS 139 >gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] Length = 1467 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN+ + + +E + +G+E L+ + PD+++ D + + G+E Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D ++ IPVI +TA + + G AYI KP S + I++ + E Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 >gi|224538238|ref|ZP_03678777.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM 14838] gi|224520170|gb|EEF89275.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM 14838] Length = 1472 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ R + + ++ NG LE ++ + PD+II D+ + E G+E Sbjct: 1211 TILIVEDNQELRFFIRTIFAQY-FNVIEAENGNIGLEKSKLYMPDIIISDVMMPEKDGIE 1269 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++ IP++ +TA + + K G + YI+KP S + I + + Sbjct: 1270 MVRELRDEMTTSHIPIVMLTAKSTIESKIEGMKLGADDYITKPFSAAYLKARIFNLLEQ 1328 >gi|189464856|ref|ZP_03013641.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM 17393] gi|189437130|gb|EDV06115.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM 17393] Length = 1347 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ IVEDN+ + + NG + +E A PD+++ D+ + ++G Sbjct: 1091 KRILLIVEDNQDICNYIAESFSDD-FEVKTAANGQQGMEQALSCIPDIVVSDVMMPIMNG 1149 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + K +KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1150 ITMCKMLKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1208 >gi|325298739|ref|YP_004258656.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] gi|324318292|gb|ADY36183.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1377 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN + L ++ Y +NG E L R+H D+I+ D+ + + G+ Sbjct: 1128 LLVEDNGELLGLMARILSKD-YTVYTAKNGEEGLGCTRKHDIDLIVSDVMMPVMDGITFC 1186 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK D + IP + +TA ++ D + G +A+I+KP SL++ I + Sbjct: 1187 RKIKGDFDTSHIPFLLLTAKNLEEDRVEAYESGADAFITKPFSLTLLQARIANLL 1241 >gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRKNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ ED+ +L R + + L +G EA++ A PD++++D+ + + GLE+ Sbjct: 5 VLVAEDDVKQAELLRRYLRREAHSVLVVHDGREAVDQAALRHPDLLVLDVMMPGLDGLEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ +S ++PV+ VTA + D+ G + Y++KP M ++ + A Sbjct: 65 VRALRRES---DVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRA 120 >gi|226354940|ref|YP_002784680.1| response regulator CheY [Deinococcus deserti VCD115] gi|226316930|gb|ACO44926.1| putative response regulator, CheY, Guanylate cyclase, GGDEF domain with PAS/PAC sensor and Response Regulator Receiver modulation [Deinococcus deserti VCD115] Length = 448 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++EDN + + +E +GY + +G L A +++PD++I+D+ L + S Sbjct: 1 MTPNILLIEDNPDITNVVKYDLEQAGYQVMTAEDGSSGLTSAWENQPDLVILDLGLPDFS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++ ++PVI +TA + + + G YI KP + ++ + Sbjct: 61 GEEVARRLRA---TSDVPVIILTAMDAVEQKVSLLRAGANDYIVKPFYPEELLARVEVQL 117 Query: 121 G-EA 123 A Sbjct: 118 RARA 121 >gi|224536597|ref|ZP_03677136.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM 14838] gi|224521853|gb|EEF90958.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM 14838] Length = 1364 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVI--IMDIQLQEIS 60 KK+++VEDNE +K+ D + Y ++ NG EA+E + K D++ I D+ + ++ Sbjct: 1115 KKLLLVEDNEELLKVMADSLSRE-YHIIKATNGKEAIEQLEKTK-DIVVVISDVMMPVMN 1172 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +K+ E IP+I +TA + + D + G + YI+KP L++ + IK + Sbjct: 1173 GIELCHYMKKQDEWLHIPIILLTAKSSESDIIEGYEAGADDYITKPFQLTLLLVKIKSLL 1232 >gi|218130279|ref|ZP_03459083.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697] gi|217987563|gb|EEC53891.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697] Length = 1359 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN+ + R + Y NG AL + +++ PD+II DI + E+ G E Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG-E 122 + + +K D IP+I +TA + + G + YI KP ++ I TI + Sbjct: 1155 LCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLANR 1214 Query: 123 A 123 A Sbjct: 1215 A 1215 >gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064] Length = 1804 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1684 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1743 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1744 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVR 1802 >gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 216 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + GY G E L A D I++D+ L E+ G Sbjct: 2 RLLVVEDDPDLLANLLKALGEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPELDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + PV+ +TA D R G + Y++KP L ++ I + Sbjct: 62 LLQRLR---RTKRTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRALIRRS 118 >gi|167588835|ref|ZP_02381223.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 246 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L D +E +G NG E + PD+I++D+ + GL Sbjct: 6 HVLIVDDDRGIRELIADYLEKNGMRVSLAANGREMRGVLDSGAPDLIVLDLMMPGEDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + +PV+ +TA + D + G + Y++KP ++ + I+ + Sbjct: 66 LCRELR-VGKFRAVPVLMLTARGEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRR 123 >gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 246 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E LE+ ++ ++++DI + +I G+ Sbjct: 18 TILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIMMPKIDGIH 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + +K + Sbjct: 78 MCMKVREQ---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRR 133 >gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum gryphiswaldense MSR-1] Length = 1123 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N ++ L+ G+ A +G EAL +Q D+++MD+Q+ + GL Sbjct: 871 RILVAEDNAINQQVAVGLLTKLGHRADVAHDGAEALIQVQQGDYDLVLMDMQMPNMDGLT 930 Query: 64 ITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I+ D + I +IA+TA AM D G YISKPI + ++ G Sbjct: 931 AARAIRALDGSISAITIIAMTANAMDEDRNACLAAGMNDYISKPIDRQRLAALLSRWQGR 990 Score = 51.3 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 13/102 (12%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 +++V +E + G Q + + L +AR + +VI+++ + + Sbjct: 732 ILVVAADEELRASLDAPLTDWGAGVGQASDALSGLTVARDAMQDGNPFNVILIEAGMSGM 791 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA 101 SG ++ ++ DS L + ++ + G + Sbjct: 792 SGRDLASILRADSALSGLRILMFSRNPQ--------DFGADD 825 >gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905] gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905] Length = 224 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L + G+ ++ +G EAL + D++++DI + + G Sbjct: 1 MTTILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIMMPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+++ EIP++ +TA ++ + + G + Y++KP +K + Sbjct: 61 WTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 298 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + +V+D+ +L + GY +G + + +PD++++D+ L GL Sbjct: 63 TIWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQRPDLVVLDLMLPGDDGLT 122 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ S+ ++PV+ +TA D + G + Y++KP M I+ + Sbjct: 123 LLRRLRDSSD--DLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRR 179 >gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D+ G + +I KP S + + + Sbjct: 61 GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|262279093|ref|ZP_06056878.1| AdeR [Acinetobacter calcoaceticus RUH2202] gi|262259444|gb|EEY78177.1| AdeR [Acinetobacter calcoaceticus RUH2202] Length = 243 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ G ++ NG +A+E+ D++I+DI++ E++G E+ Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHATQPIDLVILDIKMPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA + D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQKAAT---PVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6] gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF] gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636] gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6] gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF] gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium] gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + L ++ GY + G EAL+ + D+ ++D+ L +I Sbjct: 1 MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E+ PVI +TA D+ G + YI+KP + + IK + Sbjct: 61 GFKIVQKIRENHFF---PVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L L +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRES---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] Length = 242 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1287 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 73/119 (61%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV+I ED+++NM L + ++ ++ NG EA+E R ++PD++ MDIQ+ E++G Sbjct: 1166 KVLIAEDHKINMLLVKSMLAKILVNSELIEAANGREAIEAFRANRPDIVFMDIQMPEMNG 1225 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ +P+IA+TA + G+ E+ + G + Y++KP+ +I+K++ Sbjct: 1226 YEATREIRRAEGRSRVPIIALTAGTVVGEREKCIEAGMDDYLTKPVLKDTLEASIRKWL 1284 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 18/126 (14%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++IV+DN ++ +D++ + +G EA L K DV+++D Q+ G+ Sbjct: 1019 KILIVDDNAHAGQILKDMLGNKRIASDYIPSGEEAYALLSSGKKYDVVLIDGQMPGWDGI 1078 Query: 63 EITKQIKEDSELQEIPVI---------AVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 E T++I++ S+ + P+I A+TAF + + ++ KP+ + Sbjct: 1079 ETTRKIRKLSQGNKQPIILLNDSFDDEALTAFGNELNIRH--------FLVKPVKIQQLF 1130 Query: 114 ETIKKY 119 + Sbjct: 1131 HVLADL 1136 >gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855] Length = 1444 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN+ + + +E + +G+E L+ + PD+++ D + + G+E Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1247 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D ++ IPVI +TA + + G AYI KP S + I++ + E Sbjct: 1248 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306 >gi|153875655|ref|ZP_02003359.1| two-component response regulator [Beggiatoa sp. PS] gi|152067881|gb|EDN66641.1| two-component response regulator [Beggiatoa sp. PS] Length = 335 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D N+ L + + + L ++G AL+ A KPD+I++D+ + ++G Sbjct: 1 MDTLLVVDDVPANVNLLLKFLTQANFKVLVAKDGESALKKAAYAKPDLILLDVMMPGLTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K ++ Q IP+I +TA + D+ + G YI+KP+ + I ++ Sbjct: 61 FEVCKILKSQTQTQNIPIIFMTALSETVDKVKGFSLGAVDYITKPVQHEEILVRINTHV 119 >gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED +L +D +E SG+ G + L A +II+D+ L + G Sbjct: 1 MDKILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI K+++E+ + IPVI V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FEICKRVREE---KNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ L + + + ++G E + D++++D+ L GL Sbjct: 7 HILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRVDLVVLDVMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S L P+I +TA D + G + Y++KP + + I+ + Sbjct: 67 LCRRVRASSPL---PIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRR 122 >gi|327396459|dbj|BAK13880.1| transcriptional regulator BaeR [Pantoea ananatis AJ13355] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V+I+ED+ + ++ GY + NGM LE + +PD+I++D+ L ++G Sbjct: 3 TKRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEQVGRWQPDLILLDVMLPVMNG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ I+ + PVI VTA D + G + Y+ KP + ++ + Sbjct: 63 TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119 Query: 122 EA 123 A Sbjct: 120 RA 121 >gi|238650401|ref|YP_002916253.1| response regulator PleD [Rickettsia peacockii str. Rustic] gi|238624499|gb|ACR47205.1| response regulator PleD [Rickettsia peacockii str. Rustic] Length = 450 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D+I++D+ + E+ G Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 67.8 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270 >gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 240 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 ++ R + G+ L+ +G L L R H PD+I++D+ L + GL++ ++++ Sbjct: 16 REVLRRYLTRDGHDVLEAADGPTGLRLVRSHHPDLIVLDLMLPGMDGLQVCREVR---RT 72 Query: 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +PVI +TA + D + G + Y+ KP S + + + + Sbjct: 73 STVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRS 121 >gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 979 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 72/120 (60%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61 +V++V+DN N ++ ++E G + NG+EAL+ + DV++MD+ + + G Sbjct: 852 RVLLVDDNLFNQEVACAILEDVGAVTAVAFNGLEALQRLEEAKDPYDVVLMDMAMPVMDG 911 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE +++I+ + +++P+IA+TA AMKGD E G +++KPI ++ F +++ + Sbjct: 912 LEASRRIRSMEKYRDLPIIAMTANAMKGDREACLAAGMSDHLAKPIDITEFYAVLRRCVR 971 Score = 83.6 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQE 58 M + V++V+DN ++ + G+ +G +AL + + ++I+D + E Sbjct: 703 MGRAVLVVDDNPAALQSLVLCVTRLGFACEAVGSGQQALTAMLRDPGRFSLVILDWDMPE 762 Query: 59 ISGLEITKQIKEDSELQEIPVI--AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G +++ ++PV+ A++ E IR G + KP++ ++ I Sbjct: 763 LDGPTTLSRLRATGLPDDVPVLLAALSCHEDPQGRE-IRDIGAAGQLIKPVTTFGLLDAI 821 >gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 228 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D ++ + + GY NG +AL LA + PDV+++D+ L +I G Sbjct: 1 MKRILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNPPDVLVLDLGLPDIEG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + I+ ++P++ ++A D+ G + Y++KP L + ++ Sbjct: 61 ADVIRGIRA---WSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVER 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753] gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D L ++ Y + MEALE D+ I+DI L +IS Sbjct: 1 MSEKILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GFTLCQKIRERYTY---PVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 1253 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+DN L+ + NG +AL PD+++ D+ + + G Sbjct: 647 RILIVDDNHDMRDYLVRLLNPY-FTIDTALNGQDALLKIGAQMPDLVLSDVMMPVMDGKA 705 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I+ + +PVI ++A A + + G + Y+ KP S + + ++ I Sbjct: 706 MLERIRSNENTLRLPVIFLSARAGEEARIDGLEMGADDYLVKPFSAAELLTKVRAQI 762 >gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 239 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ L + ++ GY G E L+ R +P ++I+D+ L ++SG Sbjct: 1 MSRILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNLPDVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +Q+++++ + V+ +T+ D+ + G + Y++KP SL ++ + Sbjct: 61 YDLCQQMQKETG---VYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 11 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 70 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 127 >gi|88706906|ref|ZP_01104605.1| two-component response regulator [Congregibacter litoralis KT71] gi|88698828|gb|EAQ95948.1| two-component response regulator [Congregibacter litoralis KT71] Length = 128 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 68/115 (59%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNELN + ++ +G+ AL +G +AL+ PD++++D+ L I G + Sbjct: 7 LLVEDNELNRDMLSRRLKRAGFDALIAEDGAKALDCIESEHPDLVLLDMNLPLIDGWTVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+++ +S L P+IA+TA AM D ++ GC+ Y +KPI +E IK+ + Sbjct: 67 KRVRANSALAGTPIIALTAHAMPEDRDKAIAAGCDDYATKPIDFPALLEKIKRLL 121 >gi|315127117|ref|YP_004069120.1| signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas sp. SM9913] gi|315015631|gb|ADT68969.1| putative signal transduction histidine kinase two-component system with Protein-glutamate methylesterase domain [Pseudoalteromonas sp. SM9913] Length = 918 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDN +N ++ ++E + +G++ALE+ + D+I+MD Q+ + G Sbjct: 798 KRILLVEDNAINRQVIAKMLEPTKASLTMAEDGLKALEVLKSQSFDLILMDCQMPNMDGY 857 Query: 63 EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+ E +P++A+TA A + D++R G + +I+KPI+ I + Sbjct: 858 ECTRAIRTTEIKTGLRVPIVAITANAYEEDKQRCLIVGMDDFIAKPINSDDLYTVIGNIL 917 >gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 268 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 25 KRILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 84 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 85 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 142 >gi|282165251|ref|YP_003357636.1| putative response regulator [Methanocella paludicola SANAE] gi|282157565|dbj|BAI62653.1| putative response regulator [Methanocella paludicola SANAE] Length = 128 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 70/122 (57%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+M+V+D +++ + ++E+ GY + +G EAL+ + PD++++DI + + G Sbjct: 1 MTKIMVVDDEPDLLEVVKLILESDGYQVVTANSGQEALDKIEKEMPDLVLLDIIMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK-GGCEAYISKPISLSIFMETIKKYI 120 E+ +IK +++ +IPVI +TA + D+ + YI+KP + +E IK+ + Sbjct: 61 WEVFSRIKGNTKTHDIPVIMLTAKDQRIDKLIGLHVVRVDDYITKPFGRAELLERIKRVL 120 Query: 121 GE 122 E Sbjct: 121 EE 122 >gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] Length = 230 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D+ L + ++ A G + L+ ++ + ++++D+ + + G Sbjct: 1 MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I++++ L P++ T+ + R + G + Y++KP + + I I Sbjct: 61 FETLEEIRKENSL---PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 250 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 ++++VED ++ + +E GY +G ALEL + + D++++D+ L Sbjct: 20 RILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++GL+I + I+ IP++ ++A + D + G + Y++KP S+ + Sbjct: 80 PSVNGLDICRLIRYQGNT--IPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 226 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALR---TAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ + +G EAL D+ I+DI L +IS Sbjct: 1 MSEKILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I + ++E + P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLSICQIMRE--KGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|150003331|ref|YP_001298075.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149931755|gb|ABR38453.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1345 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VEDNE + +E + NG EAL++ R + D++I DI + + Sbjct: 1078 MKGYTLLLVEDNESMRSFIFERLEAL-FTVETAVNGQEALDILRSNHIDLVISDIMMPVM 1136 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E+ K+IK D +L IPVI +TA + K G EAY+ KP S + I Sbjct: 1137 NGYELCKEIKADIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKTQILSL 1196 Query: 120 I 120 + Sbjct: 1197 L 1197 >gi|94500213|ref|ZP_01306747.1| two component system response regulatory protein [Oceanobacter sp. RED65] gi|94427786|gb|EAT12762.1| two component system response regulatory protein [Oceanobacter sp. RED65] Length = 227 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D++ L + + G+ + +G +AL+ Q PD++++D+ + E++G Sbjct: 1 MSRLLLVDDDQALNSLLTEYLSQEGFEVINAYDGKQALDSLTQE-PDLMVLDVMMPELNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ KQ+++ ++P++ +TA D + G + Y++KP + + I + Sbjct: 60 IEVLKQLRQKDI--QLPILMLTAKGDDLDRILGLELGADDYLAKPCNPRELLARINAILR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 65/116 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED+ L + +E G+ G A+EL RQ +PD+I++DI L + G Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 L+I K I++D +L IPVI +TA A + D + G Y+ KP + + IK Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIK 121 >gi|332306725|ref|YP_004434576.1| response regulator receiver modulated metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174054|gb|AEE23308.1| response regulator receiver modulated metal dependent phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 331 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+IV+D N+++ + ++ Y ++G EAL L + PD+I++D+ + ++G Sbjct: 9 QKVLIVDDEPANLRVLKKILGDL-YRLTFAKSGEEALRLVERELPDLILLDVMMPGMTGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + +K++ + IPV+ VTA + DE + G YI+KP+S ++ ++ ++ Sbjct: 68 DVCQALKQNPLSKGIPVMFVTALSDDVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 125 >gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045] Length = 646 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 526 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 585 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I+ + +P++A+TA AMKGD E+ + G Y++KP+ + + +++ E Sbjct: 586 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMNQWMRE 645 >gi|302383483|ref|YP_003819306.1| response regulator receiver protein [Brevundimonas subvibrioides ATCC 15264] gi|302194111|gb|ADL01683.1| response regulator receiver protein [Brevundimonas subvibrioides ATCC 15264] Length = 127 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 84/121 (69%), Positives = 105/121 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+++ GY QTR G++A+ LARQ+ PD+I+MDIQL EIS Sbjct: 1 MSKKVLIVEDNELNMKLFHDLLDSQGYQTFQTREGLQAMALARQYMPDLILMDIQLPEIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D EL IP+IAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ET++K++ Sbjct: 61 GLEVTKWLKDDEELAHIPIIAVTAFAMKGDEERIRQGGCEAYISKPISVMPFLETVRKHL 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|241762806|ref|ZP_04760870.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] gi|241368225|gb|EER62417.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] Length = 367 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D E N+KL L++ GYI + +G +AL A + PD+I++DI + ++ G Sbjct: 6 SATILVVDDEERNVKLLETLLQADGYITMSASSGRDALAQASANPPDLILLDIMMPDLDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +K D Q +P+I +T+ + + R + G E ++SKPI + ++ + Sbjct: 66 FDTTVLLKADPRTQAVPIIVITSLDDRQSKLRALEAGAEEFLSKPIDRADLKVRVRNLLR 125 >gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 209 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 14 NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 +L ++ GY + NG EAL+ + D +++DI + E+ G + K+I++ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGHSVCKEIRK--- 57 Query: 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 58 TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106 >gi|239617405|ref|YP_002940727.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1] gi|239506236|gb|ACR79723.1| response regulator receiver protein [Kosmotoga olearia TBF 19.5.1] Length = 134 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 79/120 (65%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++++DNE N+ L L+E+ GY + +G++ ++ A + KPD+I++DIQL E+ Sbjct: 1 MKKKVLVIDDNEQNLYLITFLLESKGYEVITAIDGIKGIKKAIEKKPDLILLDIQLPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+IK E+ IP++AVT++AM DEE+ GC YI KP F+ I+KY+ Sbjct: 61 GYEVAKRIKSIDEISHIPIVAVTSYAMPADEEKALAIGCVGYIKKPFFPENFIPEIEKYL 120 >gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium modesticaldum Ice1] Length = 853 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 59/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ + R +E GY ++ +G ALE Q +PD+++MD+ + + G + Sbjct: 8 ILVADDDPAMRFMLRRALEKDGYAVIEAEDGAAALEAYEQAEPDIVLMDVLMPVLDGFAL 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q++ + PV+ +T E+ + G YI+KPI ++ + +++ + Sbjct: 68 CAQLQTLPRHRRAPVLMITGLDDDASVEKAYQSGATDYITKPIQWAVLRQRVRRLL 123 >gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 235 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 62/129 (48%), Gaps = 10/129 (7%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--------QHKPDVIIMD 53 + ++++VED E + +++ GY + +G AL++ + D+II+D Sbjct: 1 MGQILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILD 60 Query: 54 IQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 I L I+G+++ + I+ + +PV+ ++A + D + G + Y++KP + + Sbjct: 61 IMLPGINGIDLCRFIRREGST--VPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELI 118 Query: 114 ETIKKYIGE 122 + + Sbjct: 119 ARCRALLRR 127 >gi|146421491|ref|XP_001486691.1| hypothetical protein PGUG_00068 [Meyerozyma guilliermondii ATCC 6260] Length = 665 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 8/127 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ EDN +N KL ++E G+ NG+EA E ++ K DV++MD+Q+ + G Sbjct: 409 SYKILLAEDNLVNQKLAVRILEKQGHRVEVVENGLEAFEAIQKSKYDVVLMDVQMPVMGG 468 Query: 62 LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 E T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M Sbjct: 469 FEATEKIRQWEKRSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 528 Query: 114 ETIKKYI 120 +TI K I Sbjct: 529 QTISKCI 535 >gi|124007931|ref|ZP_01692632.1| two-component system response regulator [Microscilla marina ATCC 23134] gi|123986693|gb|EAY26483.1| two-component system response regulator [Microscilla marina ATCC 23134] Length = 232 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 5/124 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K K+++VED+ +L ++ ++ GY R+G L+ D+ I+D+ L + Sbjct: 1 MKDEIKILLVEDDNNLGQLLQEYLQIKGYPTTLRRDGEAGLDTFHTAGFDLCILDVMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + ++I+E + +++P+I +TA +MK D + K G + YI KP S+ + I+ Sbjct: 61 MDGFTLAEKIREQN--KKVPIIFLTAKSMKEDAIKGFKAGADDYIHKPFSMEELLLRIEA 118 Query: 119 YIGE 122 + Sbjct: 119 IMRR 122 >gi|312879224|ref|ZP_07739024.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310782515|gb|EFQ22913.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 241 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+ +L R +E G+ L +G L A + D+ I+D+ L E SG Sbjct: 6 KRILVVDDDGELGELLRTYLEREGFACLHVTDGETGLREALSGRQDLAILDVMLPEKSGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ S ++PV+ +TA D + G + YI KP ++ + Sbjct: 66 DVLREIRARS---DLPVLMLTARGDPVDRVVGLELGADDYIPKPFLPRELAARVRAVLRR 122 >gi|326317892|ref|YP_004235564.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374728|gb|ADX46997.1| response regulator receiver modulated metal dependent phosphohydrolase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 375 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 V++V+D N+ L L+ Y+ +G +AL +A+ PD+I++DI + + G Sbjct: 18 ATVLVVDDTPDNLALMATLLRDH-YLVKVANHGEKALRIAQSDAPPDLILLDIMMPGLDG 76 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K ++IPVI +TA + DE R G YI+KPIS I + + ++ Sbjct: 77 YEVCRQLKAHPAARDIPVIFLTARSTPEDERRGLSVGAVDYITKPISPPILLARVHTHL 135 >gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] Length = 231 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ +G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 11 LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 70 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA D + G + Y+ KP+ + I+ + Sbjct: 71 RRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124 >gi|238756867|ref|ZP_04618055.1| Response regulator receiver modulated diguanylate cyclase [Yersinia aldovae ATCC 35236] gi|238704697|gb|EEP97226.1| Response regulator receiver modulated diguanylate cyclase [Yersinia aldovae ATCC 35236] Length = 309 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +N+++ ++ + +G +AL++ +PD+I++DI++ +++G E Sbjct: 9 KILIVDDHPINIQVLYQAF-SADHNVCMATSGKQALDVCHSQQPDLILLDIEMPDMNGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K +E +IPVI VTA + E R G +ISKPI+ + +K ++ Sbjct: 68 VCAKLKACTETSDIPVIFVTAHIDEETETRCFSAGAVDFISKPINRNTVRARVKTHL 124 >gi|224536547|ref|ZP_03677086.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM 14838] gi|224521803|gb|EEF90908.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM 14838] Length = 1356 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDN + + + T Y NG EALE+ + + D++I D+ + + G+ Sbjct: 1109 RTLLVVEDNNEIRQYLKSKLATI-YNVFDCDNGHEALEIIHRREIDLVISDVMMPVMDGI 1167 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K IK + E+ IPVI +TA + G Y+ KP + + + I+ + Sbjct: 1168 ELCKAIKSNIEINHIPVILLTAHVSDTHVKDGLSSGANDYVFKPFNFDLLLARIQNLL 1225 >gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 233 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K V++V+D + ++ Y + +G ALE +Q + D+ I+D+ L +I Sbjct: 1 MKQSNVLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI K+I++D PVI +TA D+ G + YI KP M +K Sbjct: 61 DGFEILKEIRKDHNF---PVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|110346937|ref|YP_665755.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283048|gb|ABG61108.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 242 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D++ L L+ GY +G + + D++++D+ L GL Sbjct: 9 HILVVDDHQDIRDLVAGLLAKEGYRVSAAADGRQMRRQLIESSVDLVVLDLMLPGEDGLT 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + IPV+ +TA + D + G + Y++KP + I+ + Sbjct: 69 LCRDLRAST---NIPVVMLTAKGDEFDRVLGLEMGADDYLTKPFGGRELVARIRAVLRR 124 >gi|307824938|ref|ZP_07655160.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] gi|307733985|gb|EFO04840.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Methylobacter tundripaludum SV96] Length = 1572 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D +N+ + + +E GY L ++G E L+ A KPD+I++D+ + + G Sbjct: 10 MPTILIVDDTPVNLGVVVESLENRGYRLLIAQDGTEGLKRAAFVKPDLILLDVLMPGLDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D++ +IPVI +TA + K G Y+SKP+ + + + ++ Sbjct: 70 FEVCRRLKGDADTADIPVIFMTALGDSDHKITGFKVGGVDYLSKPMQIDEVIARVGAHL 128 >gi|291566666|dbj|BAI88938.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 592 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ L +++ GY + NG AL + PD+I++DI + + G ++ Sbjct: 8 ILVVDDKPENLHLLSEILMMEGYNVRKAVNGKMALMAVKTVPPDLILLDIMMPGMDGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K + L ++PVI ++A D+ + G YI+KP + + ++ ++ Sbjct: 68 CKELKNNQNLAKVPVIFLSALNDVFDKVKAFGSGGVDYITKPFQMEEVLVRVENHL 123 >gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 229 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++ ++D E + + + +E GY NG A+ + KPD++I+D+ L +SG E Sbjct: 2 KILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLMLPGLSGEE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +I+ S+ +P++ +TA + D+ G + Y++KP S +K + Sbjct: 62 ICSKIRAISK---VPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRR 117 >gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] Length = 242 Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|298481664|ref|ZP_06999855.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298272205|gb|EFI13775.1| sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1348 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED+E + +++RNG EALE + PD++I DI + E+ G Sbjct: 1093 HVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGFT 1151 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +TA + D G +AYI KP ++ I +T++ I Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1208 >gi|291533552|emb|CBL06665.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 223 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED + +++ SGY +G A+E A ++ D +I DI + ++SG+E Sbjct: 2 KILLAEDEKDMSSALTAILQHSGYDVDSVYDGQAAMEKALENVYDCLIFDIMMPKMSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I++ L PVI +TA + D G + Y+ KP S+ + I+ Sbjct: 62 ALKIIRQKGNLS--PVIMLTAKSEIDDRITGLDAGADDYLMKPFSVGELLARIRSLTRR 118 >gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] Length = 228 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED + + ++ GY NG LE A D I++D+ L EI+G Sbjct: 1 MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ + + P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVCRRIRRE---KITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 + Sbjct: 118 Q 118 >gi|225869229|ref|YP_002745177.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702505|emb|CAX00433.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + ++ +GY +G +ALEL + + D+II D+ + + Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIITDVMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ E + P + +TA + D+ G + +ISKP S + +K + Sbjct: 61 GYDFIGEV--LLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118 Query: 121 GE 122 Sbjct: 119 NR 120 >gi|108761373|ref|YP_630825.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465253|gb|ABF90438.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 970 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++M+VED+ L+ Y ++ NG + + A + +PD+I+ D+ + +SG Sbjct: 597 SPRIMVVEDDPEIRSFLARLLAQH-YRVMEAINGDDGRQRALRERPDLILSDVMMPVMSG 655 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++ D + +IPVI +TA + G Y+ KP S + + I+ + Sbjct: 656 LQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNELLARIETQLR 715 >gi|113477574|ref|YP_723635.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] gi|110168622|gb|ABG53162.1| response regulator receiver sensor signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 440 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 57/116 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ + + + + + +G A+ A+ P +I++D+ + I G E Sbjct: 7 ILVVDDTPANLAVLSEALSDADFEVAIATDGELAITQAKLSLPSLILLDVMMPGIDGFET 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K + + IP+I +TA + D+ + G Y++KP + + +K + Sbjct: 67 CRRFKACNITKNIPIIFMTALSDCIDKVKGLSLGAVDYVTKPFQEAELIARVKTQL 122 >gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681] gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681] Length = 1039 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 KV+ V+D+E+N+++ +L+ T+G + + EAL + + + D++I D + E+SG+ Sbjct: 706 KVLAVDDDEVNLRVLEELLYTTGCSVVAVDHAEEALHMLNGRTRFDLVITDWMMPEMSGI 765 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I+E L E+PV+ +TA + GD G ++ KP+ ++ + Sbjct: 766 ELCRRIRERYSLSELPVLLLTARDLPGDIRAGFMAGANDFLRKPVDAEELKARVRTLL 823 >gi|298682184|gb|ADI95252.1| winged helix family two compontent transcriptional regulator [Pseudomonas putida] Length = 246 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L + ++ +G +G + + D+I++DI + GL Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA + D + G + Y++KP S + I + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123 >gi|262275440|ref|ZP_06053250.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] gi|262220685|gb|EEY72000.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP 101886] Length = 1306 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ ED+ +N +L ++ G NG A E ++ D+I MD Q+ + G E Sbjct: 1037 VLVAEDHPVNQELITTILTKLGCKTTVANNGALAFERFMSNRYDMIFMDCQMPVMDGFEA 1096 Query: 65 TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I++ ++ L +P++A+TA M GD+E+ G YI+KP + + + K + Sbjct: 1097 THKIRQLESENSLPAVPIVAMTANVMSGDKEKCLDVGMTEYIAKPFKQAELIAVMNKLL 1155 >gi|153808543|ref|ZP_01961211.1| hypothetical protein BACCAC_02838 [Bacteroides caccae ATCC 43185] gi|149128865|gb|EDM20082.1| hypothetical protein BACCAC_02838 [Bacteroides caccae ATCC 43185] Length = 1315 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + + +G+EAL+L + H PD+I+ D+ + ++G E+ Sbjct: 1060 ILVVDDNSDLTDFLKKSLGEYFKRIVIAADGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1119 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKED + IP+I +TA K + K G +AY++KP + + ME I+ + Sbjct: 1120 CKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMELIRNRL 1175 >gi|27377396|ref|NP_768925.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27350540|dbj|BAC47550.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 127 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 71/119 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE+N + + GY + +G + +A +PD+I+MD+ L I G Sbjct: 1 MPKILLVEDNEMNRDMLSRRLVRGGYEVIIAEDGARGVAIATSDRPDLILMDMSLPVIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QIK EL++IP+IA+TA AM D ++ K GC+ Y +KPI L + I+ + Sbjct: 61 WEATRQIKATPELRKIPIIALTAHAMATDRDKALKAGCDDYDTKPIELQRLLGKIETLL 119 >gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 226 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 243 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IVED+ +L R + GY +G E + + D +++D+ L I GL Sbjct: 5 RRVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLMLPGIDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K + + + P+I +A + + + G + Y++KP S+ + ++ + Sbjct: 65 EICK--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRR 122 >gi|326202207|ref|ZP_08192077.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988002|gb|EGD48828.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + +++I+ED+ + R L+E+ Y ++ NGM LE D++I+DI + + Sbjct: 1 MSRGRILIIEDDYDIREGIRILLESENYEVIEAENGMTGLEKLDTLM-DLVILDIMMPGM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL ++I++ + +PV+ +TA A + D+ G + Y++KP + + + +K Sbjct: 60 SGLRTCEEIRK---VSFLPVLFLTAKAQESDKLIGLMAGGDDYLTKPFTYAELLGRVKAL 116 Query: 120 IGE 122 + Sbjct: 117 VRR 119 >gi|206889649|ref|YP_002248032.1| response regulator receiver [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741587|gb|ACI20644.1| response regulator receiver [Thermodesulfovibrio yellowstonii DSM 11347] Length = 125 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 54/120 (45%), Positives = 80/120 (66%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I EDNE N KL D+ + GY NG E +E+A++ KPD+I+MD+Q+ + Sbjct: 1 MPYKILICEDNEKNRKLMEDIFKYHGYEVYLAANGKEGIEMAKRIKPDLILMDMQMPVLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I++DSE++ I +IAVT++AM GD+ER+ + G + YI+KPI E IKK I Sbjct: 61 GFEAIKKIRQDSEIKHIKIIAVTSYAMSGDKERVLQAGADYYIAKPIDTRALPEIIKKII 120 >gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + G + ++G++AL L +IIMDI + ++ G++ Sbjct: 5 KVLIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + Y++KP ++ + +K + Sbjct: 65 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 240 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+++ED+ + + + GY Q G E L + ++ PDV+++D+ L ++ G Sbjct: 1 MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+E S +P++ ++ + + + K G + Y+ KP S+ ++ I Sbjct: 61 MGVCASIRERS---HVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 242 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE- 58 M KK +MIVED+ ++ + GY + + EAL+ + D I+DI L Sbjct: 1 MAKKSIMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGS 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G ++ + +K + + PV+ ++A D+ + G + Y++KP ++ + IK Sbjct: 61 MDGFDLIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKS 120 Query: 119 YIGE 122 Sbjct: 121 IFRR 124 >gi|85860640|ref|YP_462842.1| response regulator receiver domain-containing protein [Syntrophus aciditrophicus SB] gi|85723731|gb|ABC78674.1| response regulator receiver domain [Syntrophus aciditrophicus SB] Length = 135 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 72/119 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVEDNE+N + +E G+ + +G+E + +AR PD+I+MD+ L + G Sbjct: 8 MAKLLIVEDNEMNRDMLTRRLERKGFTTVVAVDGVEGIAMARSEAPDLILMDMSLPVLDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+++K E + IP+IA+TA AM+ D ER + GC+ Y SKPI +E I + Sbjct: 68 WEATRRLKAAQETRTIPIIALTAHAMESDRERALRAGCDEYDSKPIEFPRLLEKIAALL 126 >gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum S5] Length = 864 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N R +E G+ +G EALE ++ +++MD Q+ + G E Sbjct: 607 VLLVEDNRVNQLAVRMQLEKMGFEVHLAAHGREALEKLEKNTYALVLMDCQMPVMDGYEA 666 Query: 65 TKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ +P+IA+TA AM+ D E+ G + +++KP+ + ++++ Sbjct: 667 TRAIRAKECGTDNHLPIIALTANAMEQDREKCLAAGMDGHLTKPVRPELLQPVLEQF 723 Score = 35.1 bits (81), Expect = 3.2, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 10/119 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 +V+++E N + + + T +AL+ Q V+I+ QL Sbjct: 456 RVLVIEKNAQYQNVLGEYLRAWKMECTITATRQQALQSLITTGKSQRPFHVVILSAQLAG 515 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYI-SKPISLSIFMETI 116 G I++ + + ++ ++ +T F + I S PIS + Sbjct: 516 -DGAWISQML---ALHRQCRLVLLTPFGGSNGLPMGLDPNMDTCILSHPISSIKLWRAL 570 >gi|283850943|ref|ZP_06368228.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573589|gb|EFC21564.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 814 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N ++ RD ++ G R+G EA+E+ + D ++MD+Q+ + GL Sbjct: 310 ILLVEDNAINRQVARDTLQRFGASVDVARHGGEAVEMVKVAFYDAVLMDVQMPVMDGLTA 369 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ ++P++A+TA A+ D +R + G Y++KPI + + ++I Sbjct: 370 TRLIRALPGGPDLPIVALTAHALAEDRDRCLEAGMNDYLTKPIDTGRLLNALGQWI 425 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 12/130 (9%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58 ++++V+D +LN +F ++ ++G+ NG EA E A D+I+MDI++ E Sbjct: 581 RILLVDDAKLNRAIFSQILRSAGHDVATAANGKEACRALFGEKATGRPYDLILMDIEMPE 640 Query: 59 ISGLEITKQIKED-------SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + G T+ I+ IP++A+T+ G+ R + G + + K Sbjct: 641 MDGPAATRVIRGLLSASASPPCPPGIPIVALTSHDADGERARCLEAGMDECLPKLFEHDA 700 Query: 112 FMETIKKYIG 121 ++++ + + Sbjct: 701 LLDSLAQVMR 710 >gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15] Length = 222 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED+ L+R ++E +G+ + NG +AL+ + ++II DI + ++ G Sbjct: 1 MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ S + PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLLDSLR--STRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501] gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501] Length = 233 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + L ++ GY + G EAL+ + D+ ++D+ L +I Sbjct: 1 MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E+ PVI +TA D+ G + YI+KP + + IK + Sbjct: 61 GFKIVQKIRENHFF---PVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM 1131] gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM 1131] Length = 249 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D+ L + G+ N + + + +I++D+ L G Sbjct: 14 SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 73 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ + IP+I VTA + D + G + YI KP + + I+ + Sbjct: 74 LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLR 131 Query: 122 E 122 Sbjct: 132 R 132 >gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 250 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------QHKPDVIIMDIQL 56 ++++VED ++ + +E GY +G ALEL + + D++++D+ L Sbjct: 20 RILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++GL+I + ++ IP++ ++A + D + G + Y++KP S+ + Sbjct: 80 PQVNGLDICRLLRYQGNT--IPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + + Sbjct: 138 RALLRR 143 >gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 261 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 1 ML----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M+ V++V+D + ++ G L+ ++G+EAL + + + +IIMDI + Sbjct: 1 MMIMEEYSVLVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEALMVLEEEEVHLIIMDIMM 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G++ T +I+E ++IP+I ++A + D+ G + Y++KP + + + Sbjct: 61 PRMDGIKATFKIRES---KKIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARV 117 Query: 117 KKYIGE 122 K + Sbjct: 118 KSQLRR 123 >gi|53713422|ref|YP_099414.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60681669|ref|YP_211813.1| putative two component system histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|253565409|ref|ZP_04842864.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|265763688|ref|ZP_06092256.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|52216287|dbj|BAD48880.1| two-component system sensor histidine kinase [Bacteroides fragilis YCH46] gi|60493103|emb|CAH07884.1| putative two component system histidine kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|251945688|gb|EES86095.1| two-component system sensor histidine kinase [Bacteroides sp. 3_2_5] gi|263256296|gb|EEZ27642.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_16] gi|301163212|emb|CBW22762.1| putative two component system histidine kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 375 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + + NG +AL+ ++ PD+I++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFNIVTASNGNQALDQVKKENPDLILLDVMMPDMSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++K D E IP+I +TA D + + G +ISKP + + + I Sbjct: 71 VSQKLKADPEAAHIPIIFLTALNSTADIVKGFQVGGNDFISKPFNKEELIIRVSHQI 127 >gi|118578946|ref|YP_900196.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501656|gb|ABK98138.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 236 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +M+VED + +E G G +ALE + D+II+D+ L + G + Sbjct: 9 HIMLVEDEIHLARGICFNLEEDGCRISHFATGEKALEALQFEHFDLIILDVMLPGMDGFQ 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ +P++ +TA + + D + G + Y++KP +L F+ +K + + Sbjct: 69 VCQSVRRMDG--RVPILMLTARSEESDRVHGLETGADDYLTKPFNLVEFLLRVKGMLRRS 126 >gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 241 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+D+ L ++ G L G RQH D++++DI + G Sbjct: 4 SPTILVVDDHRDIRDLVGRYLQEHGLRVLLADGGDAMKRQLRQHSVDLVVLDIMMPGDDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++E +EL PVI +TA + + D + G + Y++KP + + IK + Sbjct: 64 LTLCRYLREHTEL---PVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|39997317|ref|NP_953268.1| response regulator [Geobacter sulfurreducens PCA] gi|39984208|gb|AAR35595.1| response regulator [Geobacter sulfurreducens PCA] gi|298506254|gb|ADI84977.1| chemotaxis protein CheY [Geobacter sulfurreducens KN400] Length = 123 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED E +KL L+ + GY +G AL+ PD+II+DI L + G Sbjct: 4 KRILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPPDLIILDIMLPGMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + IK D + IPV+ +TA D ++ + G AY++KP + +E I+ + Sbjct: 64 EVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQGLL 121 >gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A] gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1467 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN+ + + +E + +G+E L+ + PD+++ D + + G+E Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D ++ IPVI +TA + + G AYI KP S + I++ + E Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 >gi|307152868|ref|YP_003888252.1| response regulator receiver protein [Cyanothece sp. PCC 7822] gi|306983096|gb|ADN14977.1| response regulator receiver protein [Cyanothece sp. PCC 7822] Length = 125 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 69/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IV+D+ ++ +L++ G L+ +GMEA E ++ PD++I D+ + +++G Sbjct: 1 MITVLIVDDSPSLRQILIELLQKRGINVLEAASGMEAQEQIQKEVPDLVITDLIMPQMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + IK + Q++PV+ + + + D K G +AYI+KP + ++TIK + Sbjct: 61 YELCRWIKNNPSTQDVPVLICSTKSEEFDRYWGMKQGADAYITKPFQPAEMLQTIKFLL 119 >gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 233 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D + ++ Y + NG +AL D+ I+D+ L +I G E Sbjct: 5 TVLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPDIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I KQI+ PVI +TA D+ G + YI KP M +K + Sbjct: 65 ILKQIR---LTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRR 120 >gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] Length = 232 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + R + Y ++G E L A ++ D+ I+D+ L EISG+ Sbjct: 2 RILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPEISGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++E+ ++ P++ +TA + D+ + G + Y+ KP + I + + Sbjct: 62 LIKELREND--KQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRS 119 >gi|71281676|ref|YP_267431.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71147416|gb|AAZ27889.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 246 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 63/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ + + G+ G +++ +++ D++++D+ L ++G Sbjct: 1 MYNILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTTDIVLLDVMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E+ + I++ + +++P+I +TA A + DE + G + Y+ KP+ + I + + Sbjct: 61 IEVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARINRQL 119 >gi|21228982|ref|NP_634904.1| response regulator [Methanosarcina mazei Go1] gi|20907523|gb|AAM32576.1| Response regulator [Methanosarcina mazei Go1] Length = 137 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 52/120 (43%), Positives = 81/120 (67%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++VED+ + M+L R L+ T GY + + R+G EAL++ ++++ D+I++DIQL + G Sbjct: 13 MKNILVVEDSAIIMELIRFLLTTFGYESKEARDGFEALKIVKENRFDLILLDIQLPGLDG 72 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K+IK E+ PVIA+TA AM+GDE+R K GC YISKPI + + IG Sbjct: 73 LEVLKEIKNLPEICRTPVIALTAHAMQGDEDRFLKAGCNGYISKPIEIERLKSMLDSCIG 132 >gi|57239049|ref|YP_180185.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden] gi|58578992|ref|YP_197204.1| response regulator PleD [Ehrlichia ruminantium str. Welgevonden] gi|57161128|emb|CAH58041.1| putative response regulator component of a two-component regulatory system [Ehrlichia ruminantium str. Welgevonden] gi|58417618|emb|CAI26822.1| Putative regulatory component of sensory transduction system [Ehrlichia ruminantium str. Welgevonden] Length = 461 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IV+D N+KL + + Y L NGM+A+++A++ PD+I++D+ + E+ Sbjct: 1 MTAKVLIVDDLAANIKLLQAKLVNEYYNVLTATNGMDAIQIAQEKHPDIILLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K++K D IPV+ VTA D G + +++KPI+ I+ Sbjct: 61 GFETCKRLKSDPTTIHIPVVMVTALDNTSDNRATGLSHGADDFLTKPINDIALFARIRSL 120 Query: 120 IG 121 Sbjct: 121 TR 122 Score = 70.9 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +++ L + ++++ S + + N + L L+ D+II+D++ GL + Sbjct: 159 ILIADEDTLRSEHINNILQQSFQQTVVSHNIEQVLNLSNIENYDLIIIDLEFSG-DGLRL 217 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGD---EERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ E + P++ + D + G YI+ P+ + + + + Sbjct: 218 CSHLRNKIETRYTPILVL--LDENEDTKLLTKAFDIGIHDYITTPVDSNELIARVNVQVK 275 Query: 122 E 122 Sbjct: 276 R 276 >gi|325275465|ref|ZP_08141393.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099396|gb|EGB97314.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 240 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D++ +L D + +GY L+ +G + +H D++++D+ L Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLADAGYNVLEAADGEQMRAQMARHTVDLVVLDLMLPGED 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +Q++ L VI ++A D + G + Y++KP + IK + Sbjct: 61 GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 222 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED + + ++ Y G + LE A + D+I++D+ L I+G Sbjct: 1 MKKILLIEDEKNLARFIELELKHESYEVTVEYEGRKGLESALSEEWDIILLDLMLPGING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I++ ++ P+I +TA D+ G + YI KP ++ + ++ + Sbjct: 61 IEVCRRIRK---TKQTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ [Xenorhabdus nematophila ATCC 19061] gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 239 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + +II+D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP+I ++A + D + G + Y+SKP + + ++ + Sbjct: 66 VCRRLRSQNNA--IPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRR 122 >gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268] gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268] Length = 237 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++ +D++ ++ + GY ++ +G + L++ + D+II+D+ + + G Sbjct: 1 MQKILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILEKENVDLIILDVMMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E S IP+I ++A D+ G + YI+KP + + +K + Sbjct: 61 IRTTLKIREKS---SIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|166031682|ref|ZP_02234511.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] gi|166028659|gb|EDR47416.1| hypothetical protein DORFOR_01382 [Dorea formicigenerans ATCC 27755] Length = 946 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 75/122 (61%), Gaps = 5/122 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEI 59 K++++VEDNELN ++ + ++E +G+ + NG A++ + DV++MDIQ+ + Sbjct: 824 KRILVVEDNELNREIVKAVLEETGFEVEEAENGAVAVDKIKTAGALYYDVVLMDIQMPVM 883 Query: 60 SGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G TK+I+ EDS+L IP+IA++A A + D + G +++KP+++S ++ + Sbjct: 884 DGYMATKKIRNLEDSDLANIPIIALSANAFEEDRKASADAGMNGHLAKPVNVSELLKMLC 943 Query: 118 KY 119 K Sbjct: 944 KL 945 >gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 224 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + ++ + + +G EALE DVII+D+ + +++G E Sbjct: 2 KILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ + E V+ +TA ++ + G + Y+ KP + I+ + Sbjct: 62 VVKNLRANKN--ETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR 118 >gi|332798879|ref|YP_004460378.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696614|gb|AEE91071.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 224 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + + + E Y L +G+EA++ + +PD+I++DI + ++ Sbjct: 1 MRTKILIVDDEADIVAMLKGFFENRNYDVLTATDGIEAIKQ-SERQPDIILLDINMPQLD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++I+ + P++ +TA D+ + G + YI KP S+ + ++ Sbjct: 60 GLSVCRRIR---DYVSCPILFLTARIEDADKVKGFSVGGDDYILKPFSIIELEARVAAHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1051 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 78/121 (64%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN++N L R+L+ G+ A G+EAL+ RQ + D+++MDI++ +++GL+ Sbjct: 929 RVLVAEDNQINQVLIRELLGMQGHTASIVGTGLEALQALRQAEYDLVLMDIRMPDMNGLQ 988 Query: 64 ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + +IPVIA+TA+A++GD +R G + Y++KPI + F ++ G Sbjct: 989 AVQRIRAGEAGKTDIPVIALTAYALEGDRKRFLAAGMDGYLAKPIRIEEFNTVLRDVAGR 1048 Query: 123 A 123 A Sbjct: 1049 A 1049 >gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 234 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEI 59 +KKV++ ED + + + SGY + G +AL+ +++ DV ++DI + I Sbjct: 1 MKKVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+++ K+I+E + +I ++A + + D+ G + YI+KP S+S + + Sbjct: 61 DGMQVCKKIREKNSGMG--IIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAV 118 Query: 120 IGE 122 Sbjct: 119 CRR 121 >gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 231 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++V+D +++ + + +G+ L +G AL++ + +PD++I+D+ + + G Sbjct: 4 KRILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQEPDMMILDVMMPGMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K++++ +IPV+ +TA D+ + G + Y+ KP + ++ + Sbjct: 64 FAALKELRK---TSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILK 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 247 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L + SG+ G +AL A + PD++++D+ L + G Sbjct: 15 ARVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGF 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E +L +PV+ +TA D G + Y++KP SL + ++ + Sbjct: 75 SVARRLREGGDL--VPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRR 132 >gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987] gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987] Length = 226 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 5/120 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQLQEI 59 +KKV+I+ED ++ + GY + +G LEL A H+ +II+DI L + Sbjct: 1 MKKVLIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G I ++I++ S +P+I +TA + + D + G + Y++KP +I + K+ Sbjct: 61 DGWSICRRIRKSS---NVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRL 117 >gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++V++VED + + D + GY ++ +G A+ + PD++++D+ L G Sbjct: 4 TRRVLVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVSCFEETSPDLVVLDVMLPGYDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ ++ +PV+ +TA + D G + Y++KP + + + Sbjct: 64 LEVCRRIQA---VRPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 241 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I++D+ L +E GY G L + + ++I+D+ L E+S Sbjct: 7 MRERILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPEMS 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++ + IPV+ +TA + D+ + K G + Y++KP S++ FM ++ I Sbjct: 67 GFAVLSELRK---TKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLI 123 Query: 121 GE 122 Sbjct: 124 RR 125 >gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 249 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEI 59 M +++I +D+ +++ D + G+ ++ NG + LE KP D+ I+DI + E+ Sbjct: 23 MQNRILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEM 82 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE + I+E + + PV+ ++A + D+ + G + Y+SKP S+ M + + Sbjct: 83 DGLETLRHIRERT---DAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAH 139 Query: 120 IGE 122 + Sbjct: 140 LRR 142 >gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1055 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED L + ++ G+ NG EAL L + +++MD+Q+ + GLE T Sbjct: 923 LLVEDEALARLAIQGMLRREGHDVRTVENGREALTLLAREPFALVLMDVQMPAMDGLEAT 982 Query: 66 KQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+ P++A+TA+AM+GD+ER G + Y++KP+ L + I + + Sbjct: 983 RRIRSGEAGLAAARTPIVAMTAYAMQGDKERFLAAGMDGYVTKPVELGELLAVIDQVL 1040 >gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] Length = 1522 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++IVEDN N ++ R+L+E G + +G EA+E+ + D+++MD+Q+ + G Sbjct: 1173 RLLIVEDNLNNQQIARELLEDEGAVVSMANHGKEAIEILEHNPSLFDLVLMDLQMPVMDG 1232 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I++ L+ +P+IA+TA AM D + G +I KP L+ + I+KY G Sbjct: 1233 FNATQYIRKSIGLKNLPIIAMTANAMVSDRDACLAAGMNDHIGKPFDLNNLIHIIRKYTG 1292 Query: 122 E 122 + Sbjct: 1293 Q 1293 Score = 98.7 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 8/121 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DN +L + + E+ +I NG +AL+ +Q + +D ++ Sbjct: 1025 RVLVVDDNPTACELIKQMGESLKWIVDVATNGSDALQRIKQQYDNGVAYGALFIDWKMPG 1084 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115 + G + +K ++E + +P ++ VTA + +R + + Y+ KPI+ S+ +++ Sbjct: 1085 LDGWQTSKYVREMMPVGNLPMIVMVTAHDREMLLQRSEEEQALLDGYLVKPITASMLLDS 1144 Query: 116 I 116 + Sbjct: 1145 V 1145 >gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1029 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ EDN++N ++ + G +G EALE RQ + +++ D+ + + G Sbjct: 766 RRILVAEDNDINRRVIARQLALLGLQCDTAEDGFEALERWRQGQYSLLLTDLHMPGMDGY 825 Query: 63 EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+T +I+ E++ + P++AVTA A++G++ER G + +I KP+ ++ E + +++ Sbjct: 826 ELTARIRSEEAPGRRTPIVAVTANALRGEKERCIDAGMDDFILKPVQVAALQEVLARWL 884 >gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 292 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+++ D ++ GY L + +G AL+ + PDVII+D ++ I G E Sbjct: 10 TILLVDDAPDNLRVLHDALQQQGYRVLVSTDGQSALDSVQLMPPDVIILDARMPGIDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K++K D ++IPVI +T + + + G Y++KP+ + + I ++ A Sbjct: 70 TCKRLKNDLTTRDIPVIFMTGLSDTEYIVQGFQAGGVDYVTKPVVIEELLVRITTHMQRA 129 >gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 652 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 5/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED ++N + +E G+ NG + L+ D+++MD+Q+ I+G+E Sbjct: 523 RILVAEDEKINRLYTKQYLEQQGFTVETVANGQQVLDKLFYEDFDLVLMDVQMPIINGIE 582 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK-- 118 TK I++ IP+IA+TA+AM+GD E+ + G YI+KP+ +TI + Sbjct: 583 ATKAIRKGEAGAHNKRIPIIAITAYAMQGDREQFIEQGMNDYIAKPVIKEELYKTITRTI 642 Query: 119 YIGEA 123 ++ ++ Sbjct: 643 HLNQS 647 >gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED + ++ Y L NG LELA + KPD+I+ D+ + E+ G Sbjct: 1 MKKILVIEDEPEMRRNLVTILRLEQYQPLGAENGRLGLELAAKEKPDLILCDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K ++E++ + IP I ++A K D+ G + Y++KP++ + +E I Sbjct: 61 YGVLKALRENAATESIPFIFLSAKGEKIDQRNGMNLGADDYLTKPVARAELLEAIVARFR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|172036052|ref|YP_001802553.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC 51142] gi|171697506|gb|ACB50487.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC 51142] Length = 594 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ +GY +G AL A+ PD+I++DI++ ++ G E+ Sbjct: 13 ILIVDDKPSNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMPPDIILLDIKMPDMDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+++ E EIPVI ++A D+ + + G YI KP + + ++ Sbjct: 73 CEQLQQFPETTEIPVIFLSALQDVEDKVKAFEVGGVDYIIKPFQFQEVLARVSLHL 128 >gi|160885643|ref|ZP_02066646.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483] gi|156109265|gb|EDO11010.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483] Length = 1368 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDNE + R L + Y + NG E + +A++ PD+II D+ + G Sbjct: 1114 KSLLIVEDNEDVREYIRSLFISK-YTVYEAGNGEEGVRMAKEKLPDLIISDVMMPVKDGF 1172 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+ E IP + +TA A D + + G + Y+ KP + I + I Sbjct: 1173 TCCREIRTQQETAHIPFLMLTAKAEDVDVLQGSRSGADDYMMKPFNPEILKAKVDNLI 1230 >gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED++ + + + G+ NG EAL++ K +VI++D+ L +I Sbjct: 1 MGYKILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E + I+ S +PV+ ++A D+ G + YISKP S+ + IK I Sbjct: 61 GMECLRMIRSKSM---VPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|154490294|ref|ZP_02030555.1| hypothetical protein PARMER_00526 [Parabacteroides merdae ATCC 43184] gi|154088905|gb|EDN87949.1| hypothetical protein PARMER_00526 [Parabacteroides merdae ATCC 43184] Length = 1361 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED++ + L++ Y NG E L+L ++ KPD+I+ D+ + + G E+ Sbjct: 1113 VLVIEDDQDLRDSLQRLLQ-EKYTISMAANGEEGLKLVQEIKPDLILSDVMMPIMDGFEL 1171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 KQ+K E IP+I +TA D G +AYI+KP + ++ I I Sbjct: 1172 CKQLKRKKETSCIPIILLTAKINDKDYLEGLNCGADAYITKPFNFNVLQANIDMVI 1227 >gi|146308781|ref|YP_001189246.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576982|gb|ABP86514.1| integral membrane sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 802 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 59/117 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN +N + R ++ GY NG EAL+L R D +++D Q+ + G Sbjct: 672 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALDLLRSETVDAVLLDCQMPVMDGFA 731 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ E+PV+A+TA + GD ER G Y++KP+ + ++ Sbjct: 732 TCRALRALPGCAEVPVLAITAHSHSGDRERCLAAGMSDYLAKPMKFEELRVLLHDWV 788 >gi|71279016|ref|YP_268481.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea 34H] gi|71144756|gb|AAZ25229.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea 34H] Length = 242 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K +++++D+ +L + +E+ + +G L A D+I++D+ + ++G Sbjct: 8 TKHILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAFDDSFDLILLDVMMPILNG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K + + P++ +TA D + G + Y++KP + IK + Sbjct: 68 FEVLKAL---GGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 239 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M ++ +++V+D + + +G+ N EA + D++I+DI + Sbjct: 1 MSERPHLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL + + I+E EIPVI +TA + + D + G + Y+ KP S + IK Sbjct: 61 EDGLSLCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKV 117 Query: 119 YIGE 122 Sbjct: 118 IFRR 121 >gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1522 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ +DN L+ +GY + +G A+ R +PD+++ D+ + + G Sbjct: 742 TVLLADDNADMRGYVERLLAGAGYRVVAVEDGRSAVTAVRAIRPDLVLSDVMMPHLDGFG 801 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + + +E+P+I ++A A + + G + Y++KP S + ++ + A Sbjct: 802 VIDALRRNPDTRELPIILLSARAGEESAIDGFQAGADDYVAKPFSARELIARVEGTLRLA 861 Score = 76.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61 V++VED+E ++ Y LQ R+ AL + P D++ D+ + + Sbjct: 1266 TVLVVEDDEEVRHTVVAMLTDLDYRVLQARDAQSALAILESGVPIDLLFTDVVMPGPLRS 1325 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + K + V+ + + R +SKP S I I++ + Sbjct: 1326 PDLAR--KAQERFPNLAVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREILARKIRQVL 1382 Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 +++VED+ L D++ G+ L+ + EAL +A +H D++ D+ L + G Sbjct: 1405 TILLVEDDALIRMAVADMVAELGHRVLEAGSVREALHIAGSEHAIDLLFTDLTLPDGRGE 1464 Query: 63 EITKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ ++ + L PV+ + + + GG ++ KP L+ I + Sbjct: 1465 DLAAELVRRMPGL---PVVFASGRMGPDELDAASFGGKTVHLRKPYDLAGLERAILAAL 1520 >gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I +DNE ++ R L+E+ GY ++ NG +A+ ++ D+II+DI + SG Sbjct: 1 MKNILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAVIKVDKN-IDLIILDIMMPIKSG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E + P++ +TA D+ GC+ Y+SKP S + + +K + Sbjct: 60 FKACVEIREKTSA---PILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] Length = 262 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + + + +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 28 IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 87 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 88 TRRIRQEGI--NAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 143 >gi|168703281|ref|ZP_02735558.1| putative response regulator [Gemmata obscuriglobus UQM 2246] Length = 143 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I +DN N L ++ SG+ NG +AL AR+ PD+I++D+ + ++SG Sbjct: 1 MPRILIADDNPSNADLLDAHLDGSGFETKLVHNGADALAAAREWNPDLILLDVMMPKMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++++ D + V+ VTA D E G + +I+KPI+ + + ++ + Sbjct: 61 FEVCRRLRADPATAGVAVLMVTALDQPNDVETAVDAGTDDFITKPINKTELLLRVRAML 119 >gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1467 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN+ + + +E + +G+E L+ + PD+++ D + + G+E Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1270 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D ++ IPVI +TA + + G AYI KP S + I++ + E Sbjct: 1271 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329 >gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314] gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 240 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L ++ G+ + +G E L++AR+ +PD I+D+ + + G E Sbjct: 14 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + + PV+ +TA + G + Y++KP SL + ++ + Sbjct: 74 LLTKLRAEGL--DGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 130 >gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 246 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 3/118 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED+ +L +D +E +G+ +G+ + ++ D++I+DI L + GL Sbjct: 16 KKILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIMLPGLDGL 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 EI +++ E+ ++IPV+ V+A + D+ + G + YI+KP S + +K ++ Sbjct: 76 EILRRMNEE---KDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHL 130 >gi|300864270|ref|ZP_07109150.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300337735|emb|CBN54296.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 1945 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++E + NG + + + + D+++MD+ + E+ G Sbjct: 1825 KKVLIVDDDVRNIFALTSMLERHQMQVMYAENGRDGITVLQNSPEIDIVLMDVMMPEMDG 1884 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + +P+IA+TA AMKGD E+ G YI+KP+ + ++ ++ Sbjct: 1885 YETMQAIRNIPQFSSLPMIALTAKAMKGDREKCIDAGASDYITKPVDTEQLISLLRVWL 1943 Score = 97.5 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ ++ D+ G+ L L +AR+ KP I++D+ L + G + Sbjct: 1560 LIIEDDVNFARILLDMAREHGFKGLVALRSDIGLVMAREFKPTAIMLDLNLPVMDGWTVL 1619 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++K D + IPV V+ ++ +R + G AY+ KP+S + + Sbjct: 1620 DRLKHDPNTRHIPVHIVS---VEEGRQRGLQLGAIAYLQKPVSSEALSKAL 1667 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED+E DLI G EAL + D I+MD+ L ++SG Sbjct: 1679 KSLLVVEDDETQRFSIIDLIGNHDVYTTAVGTGAEALTILNSGHFDCIVMDLGLPDMSGF 1738 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ + IK+D+ L+ +P+I T + EE K E I K + S ++ Sbjct: 1739 ELIELIKQDANLKSLPIIIYTGKELSRAEEIQLKRMAETIIIKDVRSPERLLD 1791 >gi|284050274|ref|ZP_06380484.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira platensis str. Paraca] gi|291568236|dbj|BAI90508.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 579 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 65/115 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED L + +L+ + L+ +G+ ++LA Q PD+I+ D+ + + G Sbjct: 1 MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQEHPDLILCDVMMPILDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + Q++++ + IP I +TA A + + + + G + YI+KP S + M +I Sbjct: 61 YGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSI 115 >gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1452 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ L+ + ++E SGY +G EAL+ ++ D+I+MD+Q+ + G+E Sbjct: 1330 RILLAEDDSLSSLTCKRMLEKSGYSVTAANDGQEALQRLTENDFDLILMDVQMPIMDGVE 1389 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I++ S L IP++A+TA+AM GD+E G YI+K + E I++ + Sbjct: 1390 ATKAIRKASNLGAKSSIPIVAMTAYAMTGDKESFLAAGMNDYIAKSVDKRALFEAIERVL 1449 >gi|237713754|ref|ZP_04544235.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229446201|gb|EEO51992.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 926 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 681 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 739 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 740 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 795 >gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 239 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ ++ ++ G+ +G AL R PD++++D+ L G+ Sbjct: 15 HVLVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVMLPGKDGMS 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ +S +P+I +TA D + G + Y+ KP + + + Sbjct: 75 VCREIRAESG---VPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRR 130 >gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED + G+ R+G+ A++ A + +PD +++D+ L I GL Sbjct: 16 ATILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGL 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+T++I+ D P++ +TA + D G + Y++KP S+ + +K + Sbjct: 76 EVTRRIQADHPT---PILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRR 132 >gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G ALE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|254415898|ref|ZP_05029655.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177325|gb|EDX72332.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 364 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED E + +L+ + L NG ++LA+Q +PD+II DI + E+ G Sbjct: 1 MNTILIIEDEEGIRENIYELLSAEDFEVLLAENGKTGIQLAQQQRPDLIICDIMMPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + Q++++ + IP I +TA + K D + + G + Y+SKP + + I Sbjct: 61 YGVLTQLRQNLSTEAIPFIFLTAKSAKADLRQGMESGADDYLSKPFTREALLRAIAA 117 >gi|148652854|ref|YP_001279947.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571938|gb|ABQ93997.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 231 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+EDN + E GY NG L LA ++ DVI++D+ L + G Sbjct: 1 MHKILIIEDNPDIVANVYAFFEPKGYQLDNAHNGPSGLTLAAENTYDVILLDVMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K ++E + PV+ +TA D+ G + Y+ KP SL ++ I Sbjct: 61 TQLCKALREKLHNK-TPVLMLTARDTLSDKVAGFDSGADDYLVKPFSLVELEVRVRALIR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 228 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRSRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 227 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I+ED E + +E GY NG E LE + D++++DI L +SG+EI Sbjct: 6 VLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIMLPGLSGMEI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++++SE IP+I +TA D+ G YI+KP ++ + ++ + Sbjct: 66 CRRVRKESE---IPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRR 120 >gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRAKS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|265765508|ref|ZP_06093783.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|263254892|gb|EEZ26326.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] Length = 1361 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDN + R L T Y L+ +G E + +A PD+II D+ + G Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDGF 1171 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+E E IP++ +TA A D + G + Y+ KP + + ++ I Sbjct: 1172 VCCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229 >gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273] gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273] Length = 226 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED E + + Y NG +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQRLRADNNT--TPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|160895063|ref|ZP_02075837.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50] gi|156863494|gb|EDO56925.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50] Length = 239 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + + + GY G AL+ + KPD+I++D+ + +I Sbjct: 16 MAQSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEK-KPDIILLDVNMPDID 74 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ + P+I +TA D+ + G + Y+ KP S+ I ++ Sbjct: 75 GFTVCERIR---DYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHL 131 Query: 121 GE 122 Sbjct: 132 RR 133 >gi|144898960|emb|CAM75824.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Magnetospirillum gryphiswaldense MSR-1] Length = 388 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + L++ Y +G +AL+ A + PD+I++DI + + G Sbjct: 11 TILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAAAANPPDLILLDIMMPGLDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D ++IPVI +TA + E + G YISKPIS I + ++ ++ Sbjct: 70 EVCQRLKLDPATRDIPVIFLTAKSDVDSERHGLELGAVDYISKPISPPIVLARVRTHL 127 >gi|91203276|emb|CAJ72915.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 123 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 59/118 (50%), Positives = 82/118 (69%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K VM+VEDNE N KL R +++ GY ++ G EAL L ++ PD+I+MDIQL I GL Sbjct: 4 KNVMVVEDNEKNRKLIRVVLKAKGYNVIEATTGEEALSLLKEQIPDIILMDIQLPGIDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +QIK D+ ++IP+IAVTA AMKGD+++I GC+AY+SKPI TI+KY+ Sbjct: 64 TLIRQIKADAGKKDIPIIAVTAHAMKGDQQKILDTGCDAYMSKPIDTRELPLTIEKYL 121 >gi|16329450|ref|NP_440178.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1651932|dbj|BAA16858.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 840 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 58/114 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V ++D+ LN+K+ + +E G+ +G+ A+ Q +PD+I++DI + I G E Sbjct: 8 TVFAIDDSPLNLKILQRFLEKQGWKVFIAEDGLTAITEINQVQPDIIVLDIMMPGIDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + +++K EIP+I ++A + + + G YI KP + ++ Sbjct: 68 VCRRLKAAPATAEIPIIFLSALTDQKSIVKGLELGAVDYIHKPFQQEEIITRLQ 121 >gi|186681435|ref|YP_001864631.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186463887|gb|ACC79688.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 364 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++ V+D N+ + ++E GY + AL + + PD+I++D+ + EI G E Sbjct: 11 KILAVDDVFDNLLVLEAVLEDEGYEISLVEDSKIALAMVEESPPDIILLDVMMPEIDGYE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+++ L IP++ +TA G + +I KP ++ + Sbjct: 71 FTRRIRQNPALPFIPILLLTAHYQSS-VVEGLDAGADDFIRKPFDPDELHARVRSLLR 127 >gi|312959933|ref|ZP_07774448.1| putative two component response regulator transcription regulator protein [Pseudomonas fluorescens WH6] gi|311285880|gb|EFQ64446.1| putative two component response regulator transcription regulator protein [Pseudomonas fluorescens WH6] Length = 263 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED + ++ +G+ ++G ALEL + KPD++++D+ + ++ G + Sbjct: 36 VLIAEDEPEIADILTAYLKRAGFRTAHAQDGRRALELHQLLKPDLVLLDVMMPKLDGWMV 95 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ VI +TA D+ + G + YI KP + + + I+ + Sbjct: 96 LAELRHRGNTA---VIMLTAHDQDMDKLMGLRIGADDYIVKPFNPAEVIARIQAVLRR 150 >gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 219 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+ +D ++ + GY NG +AL+LAR+ +P V ++D+ + E++G E+ Sbjct: 1 MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLAREFRPHVAVLDVMMPEMNGFEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +KE + I VI +TA D + K G + YI KP S + + I+ + Sbjct: 61 QSLKETED--NIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLR 114 >gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 240 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L ++ ++ N + + ++++D+ L GL Sbjct: 7 KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + IP+I +TA + D + G + Y++KP + + I+ + Sbjct: 67 ICRRLRSQNN--PIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRR 123 >gi|242280761|ref|YP_002992890.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] gi|242123655|gb|ACS81351.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio salexigens DSM 2638] Length = 303 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 K++IV+D LN+ + DL+ Y + +NG +AL+ + PD++++D+ + E+ G Sbjct: 5 AKILIVDDERLNLNVLSDLLRQD-YKVVLAKNGNQALDRVNSDNPPDLVLLDVLMPEMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++IK + ++IPV+ +TA + DE R + G YI KP I IK ++ Sbjct: 64 YEVLRKIKTSDKSKDIPVVFITALDSEHDEARGLEMGAVDYIRKPFHPPIVKARIKNHL 122 >gi|171060214|ref|YP_001792563.1| response regulator receiver modulated diguanylate cyclase [Leptothrix cholodnii SP-6] gi|170777659|gb|ACB35798.1| response regulator receiver modulated diguanylate cyclase [Leptothrix cholodnii SP-6] Length = 322 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D +N++ + + + +G +AL L +PD++++D+ + + G Sbjct: 23 RRLLIVDDQPINIQALYQVF-AADHQVFMATSGPQALALCLSKQPDLVLLDVMMPGMDGF 81 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D +IPVI VTA + + E G +ISKPI+ +I ++ ++ Sbjct: 82 EVCRRLKADPATADIPVIFVTAHSDEAAETLGLDVGAVDFISKPINPNIVRARVRTHV 139 >gi|119485560|ref|ZP_01619835.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp. PCC 8106] gi|119456885|gb|EAW38012.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp. PCC 8106] Length = 501 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D+ N+++ L+ GY R+G ALE + PD+I++DI++ ++SG E+ Sbjct: 8 ILIIDDHLNNLRMLSTLLRQRGYQVRNARSGSIALETVKVSLPDLILLDIKMPDMSGYEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K E EIPVI ++A D+ + K G YI+KP + ++ + Sbjct: 68 CRQLKASPETCEIPVIFISALETTFDKVKSFKVGGNDYITKPFQADEVLARVENQL 123 >gi|56966618|pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-Digmp gi|56966619|pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-Digmp gi|158430933|pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp And Gtp-Alpha-S gi|158430934|pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp And Gtp-Alpha-S Length = 459 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D E N++L + Y +G AL +A + PD+I++D+ + + G Sbjct: 1 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++K+D + IPV+ +TA +GD + + G +++KPI + ++ Sbjct: 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 Score = 75.2 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+DNE + + + + + +A +++ D++I++ + GL Sbjct: 154 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA-KISAGGPVDLVIVNAAAKNFDGLR 211 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T ++ + +++PV+A+ +G + + G +S+PI +K I Sbjct: 212 FTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 270 >gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D++ + + G NG+EAL++ + K D+II+DI + ++ G++ Sbjct: 6 ILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDILKNIKVDLIILDIMMPKMDGIKA 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E +P+I ++A + D+ G + Y+ KP S + IK + Sbjct: 66 CMKIREML---NVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRR 120 >gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D+ G + +I KP S + + + Sbjct: 61 GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|262409339|ref|ZP_06085882.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|262352791|gb|EEZ01888.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 941 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 696 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 754 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 755 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 810 >gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W] gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W] Length = 242 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+ ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|222099179|ref|YP_002533747.1| Response regulator [Thermotoga neapolitana DSM 4359] gi|221571569|gb|ACM22381.1| Response regulator [Thermotoga neapolitana DSM 4359] Length = 122 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 70/122 (57%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV++V+D+ + K+ ++ +G ++ NG ALE + PD+I++DI + + Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKAGCEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++E E ++IPVI +TA + DE G + + KP S S F+E +K+ + Sbjct: 61 GFTVLKKLQEKEEWKKIPVIVLTAKGGEDDETIALSLGAKKVMRKPFSPSQFIEEVKRLL 120 Query: 121 GE 122 E Sbjct: 121 NE 122 >gi|218246324|ref|YP_002371695.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|257059371|ref|YP_003137259.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|218166802|gb|ACK65539.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8801] gi|256589537|gb|ACV00424.1| response regulator receiver sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 374 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++ GY + NG +AL A+ PD+I++DI++ ++ G ++ Sbjct: 11 ILIVDDIPENLQLLFTMLTEQGYEVRRVLNGKQALNAAKIEPPDIILLDIKMPDLDGYQV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K ++IPVI ++A D+ + + G YI+KP L + ++ + Sbjct: 71 CEKLKSTETTRDIPVIFLSALNDAFDKVKAFEVGGVDYITKPFQLQEVIIRVENQL 126 >gi|153808459|ref|ZP_01961127.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185] gi|149128781|gb|EDM19998.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185] Length = 1339 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y NG EAL + ++KP+++I DI + E+ G Sbjct: 1075 RRILIVEDNDELRNYLLQTLSEE-YTVQTCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1133 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ K++K + E IPVI +TA + D K G + YI KP ++ I T+ + Sbjct: 1134 ELCKELKNNIETSHIPVILLTALNNEKDILSGLKIGADEYILKPFNIGILKATVDNLLTN 1193 Query: 122 EA 123 A Sbjct: 1194 RA 1195 >gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 252 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 11/128 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---------PDVIIMDI 54 ++++VED ++ + +E GY NG AL L ++ D++I+D+ Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDL 79 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 L +++GL+I + ++ + IP++ ++A A + D + G + Y++KP S+ + Sbjct: 80 MLPQVNGLDICRLLRYQGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 115 TIKKYIGE 122 + I Sbjct: 138 RCRALIRR 145 >gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ G + L+L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|67459442|ref|YP_247066.1| response regulator PleD [Rickettsia felis URRWXCal2] gi|67004975|gb|AAY61901.1| Regulatory components of sensory transduction system [Rickettsia felis URRWXCal2] Length = 450 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D I++D+ + E+ G Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDTILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D E IPV+ VTA + D + + G + +++KPI+ +K Sbjct: 61 FEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDIALFVRLKSL 118 Score = 65.5 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD +I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDFVIISSTLENEDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270 >gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 235 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED+E + R L+E+ Y + +G E L L D++I+DI + ISGL+ Sbjct: 6 ILIIEDDEDIREGIRILLESEDYQITEAADGWEGLRLLSDDT-DLVILDIMMPGISGLKT 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +PV+ +TA A + D+ G + Y++KP S + + +K + Sbjct: 65 CEEIRK---TSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRR 119 >gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI] gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 224 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + G+ G EAL+ R +P+++I+D+ L I G+E+ Sbjct: 4 ILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRTRRPEIVILDVMLPGIDGIEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ L PVI +TA D + G + Y+ KP+ + I+ + Sbjct: 64 CRRIRKIDSL---PVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAILRR 118 >gi|289673815|ref|ZP_06494705.1| response regulator receiver:GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal:CHASE3 [Pseudomonas syringae pv. syringae FF5] Length = 569 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G + RNG+EA+ + D+++MD+ + E+ G Sbjct: 445 RKILVVDDDVRNIFALTSALEHKGAVVEIARNGLEAIARLNEVEDIDLVLMDVMMPEMDG 504 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T +I++D +++P+IAVTA AMK D+ER + G Y++KPI L I+ ++ Sbjct: 505 FEATIEIRKDPRWRKLPIIAVTAKAMKDDQERCLQAGSNDYLAKPIDLDRLFSLIRVWLP 564 Query: 122 E 122 + Sbjct: 565 K 565 Score = 90.2 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L + LA ++ PD I++D++L + SGL + Sbjct: 179 ILVIEDEVRFAQILYDLAHELGYDCLVAHAADDGFNLASRYTPDAILLDMRLPDHSGLTV 238 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++KE + + IPV ++ ++ +E G Y KP + + K Sbjct: 239 LQRLKELAPTRHIPVHVIS---VEDRQEAALHMGAIGYAVKPTTREELKDVFAKL 290 Score = 76.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 44/91 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L LI EAL+L R H D +I+D++L ++ G Sbjct: 299 KRILLVEDDALQRDSIARLIGDDDIEITAVGFAQEALDLLRDHVYDCMIIDLKLPDMLGN 358 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 E+ K++ + PVI T M DEE Sbjct: 359 ELLKRMSMEDICAFPPVIVYTGRNMTRDEEA 389 >gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 228 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 +VEDNE+ L + GY + +G EA E Q+ P +I+D+ L ++SG E+ + Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ EI +I +TA + + G + Y+ KP S M ++ + + Sbjct: 69 WIRSQKR-NEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRS 124 >gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 838 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +NM + + L+E GY A NG AL Q D+++MD Q+ + G Sbjct: 533 RLLLVEDNPVNMMVAQRLLEALGYRADTVENGAAALTQLAQQAYDLVLMDCQMPVLDGYA 592 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+Q ++ +P++A+TA AM GD +R G + Y+SKPI + +++++ Sbjct: 593 ATRQWRQSEANATQARLPIVAMTANAMAGDRQRCLDAGMDDYLSKPIDQTRLKACLQRWL 652 >gi|225872108|ref|YP_002753563.1| two-component osmotic transcriptional regulator kdpE, winged helix family [Acidobacterium capsulatum ATCC 51196] gi|225794265|gb|ACO34355.1| two-component osmotic transcriptional regulator kdpE, winged helix family [Acidobacterium capsulatum ATCC 51196] Length = 231 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +++ R ++++ Y NG EAL++ + P ++I D+ + E+ G+ Sbjct: 2 RILVVDDEPQIVRVLRAALQSNDYEIFTASNGAEALQVYLEVNPALVITDLAMPEMDGVA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +T++I++ PVI V+ + ++ R G + YI+KP ++ + ++ + A Sbjct: 62 LTREIRQR---ASTPVIVVSVRNQEREKIRALDEGADDYITKPFAIQELLARVRVQLRRA 118 >gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1] gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1] Length = 1689 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 64/115 (55%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN LN +L +L+ +G ++G EAL L Q D ++MD Q+ + G E T Sbjct: 1340 LLVEDNYLNQELAVELLRQAGARVTVAQHGQEALTLLAQQSFDCVLMDGQMPVMDGYEAT 1399 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + ++P+IA+TA AM D ER G A I+KP + TI +++ Sbjct: 1400 RLIRAQPQFADLPIIAMTANAMDSDRERALAAGMNAQINKPFQVQQLYSTIAQHV 1454 >gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 240 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++IVED+ +L + GY +G + + D +I+D+ L + G Sbjct: 4 TKKILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLMLPGVDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI + + + + P+I ++A + + + G + Y++KP S+ + +K Sbjct: 64 LEICR--RARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 243 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED +L + G+ +G E A + D+I++D+ L ++ Sbjct: 1 MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I +++ P+I +TA + + + K G + YI+KP +S + + + Sbjct: 61 GLDILSRLRHQGLT--TPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ L R ++ GY + +G AL L + D +I+D+ L + GL Sbjct: 5 KKILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++I++ + +PVI ++A + + G + Y+ KP S+ + +K Sbjct: 65 EICRRIRQMARY--LPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRR 122 >gi|298246790|ref|ZP_06970595.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549449|gb|EFH83315.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED + + +E Y +G AL + + +PD++I+D L E+ G Sbjct: 1 MTSILLVEDAPELARAIKQELEAQDYWVFHVGDGKSALSMHNKERPDLVILDWMLPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ + PV+ +TA + + D + G + Y++KP S+ + ++ + Sbjct: 61 LEVLRRMRQ---VAPTPVLMLTARSEEIDRVIGLEVGADDYLTKPFSMRELLARVRAMLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 248 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A+ AR +PD +++D+ L ++ GL Sbjct: 22 RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 82 VLGRLRR--EYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 139 >gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL LA Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDAAISEPLARALRREGYEVTVRADGPGAL-LAGQSGVDLVVLDLGLPGMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ D PV+ +TA A + D G + Y++KP L+ + ++ + Sbjct: 60 LEVCRRLRADGHT--FPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254476369|ref|ZP_05089755.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. R11] gi|214030612|gb|EEB71447.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. R11] Length = 423 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ L ++ ++ G+ ++ +G A+E+ PD+I+ D + ++GL Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICLADPPDLILSDWMMPGMNGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119 E + +E S+ I +T+ + K + G + +++KP+S I ++ Sbjct: 79 EFCRAFREQSKDNYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138 Query: 120 IG 121 + Sbjct: 139 LR 140 >gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L D + +GY + NG+EALE+ D+II+DI + ++ G Sbjct: 1 MFRILVVEDDNGIRMLMEDALADAGYEPVLACNGLEALEVLESKHIDLIILDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+E ++PV+ VTA D+++ G + Y+ KP + + + Sbjct: 61 YELLRQIRESGM--DMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|94500324|ref|ZP_01306857.1| Signal transduction histidine kinase [Oceanobacter sp. RED65] gi|94427623|gb|EAT12600.1| Signal transduction histidine kinase [Oceanobacter sp. RED65] Length = 896 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 6/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---PDVIIMDIQLQEI 59 K V++VEDN +N + +D +E G I +NG EA+ ++H+ +I MD Q+ + Sbjct: 770 KHVLLVEDNPINQLVAQDTLEELGLIVDIAQNGQEAISRLQEHRSKGYSLIFMDCQMPVM 829 Query: 60 SGLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G E ++ I+ E ++ P+IA+TA AMK D + + G + +ISKP+ + + TI Sbjct: 830 DGYEASRAIRNGEAGDEHRKTPIIALTANAMKEDRDHCIEAGMDDFISKPMDIEVLKTTI 889 Query: 117 KKYI 120 K ++ Sbjct: 890 KTWL 893 Score = 94.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA------RQHKPDVIIMDIQLQE 58 +++V+DN++N ++ + T G +Q + A ++ ++ DV ++D+Q+ Sbjct: 607 ILVVDDNKINREVLSQQLTTWGASVVQADSAEMAWKVMDSHFTEKKQAFDVALLDMQMPH 666 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 SG E+ ++I+ D + + ++ +T+ + D + I K G Y SKP++ I Sbjct: 667 TSGTELGQKIQADPRYKGVRLVLMTSMLLNSDHKAIAKMGFCGYFSKPVTTDDLF-MILN 725 Query: 119 YIGE 122 IG+ Sbjct: 726 VIGD 729 >gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6] gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALEL ++ D+II D+ + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ E P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLIGEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|237722086|ref|ZP_04552567.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] gi|229448955|gb|EEO54746.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_2_4] Length = 1317 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L +D++ Y+ + ++G+EAL+ + PD+II DI + + GL + Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K + + IP+I ++A A D+ G +AYI KP + TI+ + Sbjct: 1129 INKLKSELKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 1186 >gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 1763 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1643 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1702 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1703 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVR 1761 >gi|209525938|ref|ZP_03274472.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209493615|gb|EDZ93936.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 369 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+++ED E + +L+E + + NG +E A +H PD+I+ D+ + E+ G Sbjct: 1 MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVEQAHKHLPDLILCDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + K+++ E IP I +TA A + D G + Y++KP S+ + I Sbjct: 61 YGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIA 116 >gi|183179350|ref|ZP_02957561.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|183012761|gb|EDT88061.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] Length = 502 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 166 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGISAT 225 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 226 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 280 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 23 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 82 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 83 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 136 >gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 252 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 11/128 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---------PDVIIMDI 54 ++++VED ++ + +E GY +G AL L +Q D++++D+ Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDL 79 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 L +++GL+I + ++ + IP++ ++A A + D + G + Y++KP S+ + Sbjct: 80 MLPQVNGLDICRLLRYQGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 115 TIKKYIGE 122 + I Sbjct: 138 RCRALIRR 145 >gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1937 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 ++++V+D+ N+ +E G L NG + + L + + D +++DI + E+ G Sbjct: 1795 RILLVDDDVRNIFSLTSALELHGLDVLFAENGRDGIALLKANPSIDAMLVDIMMPEMDGY 1854 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+ D + +P+IAVTA AMKGD E+ + G Y+SKP+ L + ++ + + Sbjct: 1855 ETMREIRRDERFRALPLIAVTAKAMKGDREKCMEAGASDYVSKPVDLDQLLAVLRVQLEQ 1914 Score = 113 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ + + +L G+ L ++G AL LA ++KP I +DI L ++ G + Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAAALALAHRYKPHAITLDIGLPDMDGWAL 1589 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +K D + IP+ ++ ++R + G ++ KP+ + +++ Sbjct: 1590 LDHLKNDVRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVDREGLLRALER 1640 Score = 64.0 bits (156), Expect = 6e-09, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 43/100 (43%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED++ L+ ALE + D I+D+ L ++ G E+ Sbjct: 1653 LLVEDDDNQRASITALLSEEDVKVFSVSTAAAALEAVAGGRFDCAIVDLGLPDLGGSELI 1712 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 +QI+ + +E+P+I T + EE+ K I K Sbjct: 1713 EQIRATPDGEELPIIVYTGRELTEAEEQQLKQTASTIILK 1752 >gi|160896955|ref|YP_001562537.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160362539|gb|ABX34152.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1303 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 72/119 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+DN LN ++ +L+E +G ++G++AL+L D ++MD+ + + GL Sbjct: 931 RRVLVVDDNVLNREVATELLEQAGISVQTAQDGLQALQLLDSQPFDAVLMDVHMPGMDGL 990 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ ++ S L+ +PVIA+TA A + RI G A+++KP+ + ET+++ + Sbjct: 991 SATRALRTRSALRHLPVIALTAQAYVEERARIEAAGMNAHLTKPVDDVLLYETLQRCLR 1049 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 6/124 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEI 59 V+IV+DN + ++ G +GM+AL + ++ + ++D ++ + Sbjct: 783 VLIVDDNASAREALAAMVRKLGMRCDTAADGMQALRMLQEAARQESPYGLALLDWRMPGM 842 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GLE+ ++++E +L + P + VTAF + R + G + KP++ S +I++ Sbjct: 843 DGLELARRMRERQDLVKTPAALMVTAFGRDEVQLRAAQFGLRGLLIKPLTASALRSSIRE 902 Query: 119 YIGE 122 + + Sbjct: 903 ALRD 906 >gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei] gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei] gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED+ L + + G+ G + L R P+++++D+ L I G Sbjct: 1 MAAILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ +PVI +TA D G + Y+ KP ++ I+ + Sbjct: 61 FEVCRGIRAAGP---VPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED L R + G+ +G L+ R+ P +++D+ L + G+E+ Sbjct: 5 VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGLPGLDGVEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + PV+ VTA + D + G + Y++KP S + ++ + + Sbjct: 65 CRRLRAADDW--TPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRS 121 >gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1] gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1] Length = 226 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D + L ++ G+ + G EAL+ D+ I+DI L +ISGLE Sbjct: 2 KVLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPDISGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + I+E+ P+I +TA + D+ G + Y++KP M +K + Sbjct: 62 ICQTIRENYNF---PIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRR 117 >gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 244 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + NG + L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I ++A + + + G + Y++KP S+ + +K + Sbjct: 65 EICRRARAMARY--TPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRR 122 >gi|237799880|ref|ZP_04588341.1| sensory box protein/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022735|gb|EGI02792.1| sensory box protein/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 464 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D+ L L+ Y L +G +AL + + PD+I++DI + + G Sbjct: 6 ATILIVDDDVHVRDLLEVLLRNQHYETLTAESGEQALAMIDERAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKARKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVESAELWLRVRNLLR 124 >gi|256425321|ref|YP_003125974.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256040229|gb|ACU63773.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1366 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+++EDNE ++ ++ Y ++ +G+ + PD+++ D+ + ++G+ Sbjct: 1118 QTVLLIEDNEDFRFYLKENLKDC-YHIIEGADGIAGWQKTLSGHPDLVMSDVNMSGMNGI 1176 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++IK D + IPVI VTA A + ++ R + G Y+ KP + I + ++ + Sbjct: 1177 DLCRKIKNDPRTKHIPVILVTAAAGEQEQLRGLEAGAADYLVKPFNFEIMLSRVRNLLAR 1236 >gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 242 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED +L D ++ + Y NG + +E RQH P +I++D+ L Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHSPSLILLDLMLPGCD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I++ +P+I VTA + + D + G + YI KP S + ++ + Sbjct: 69 GLTLCRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 277 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 43 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 102 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 103 EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 160 >gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 233 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D+ +L + + GY L NG EA+EL + ++I+D+ + E++GLE+ Sbjct: 6 ILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVMMPEMNGLEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + IP++ ++A A D+ G + Y+ KP + + +K + + Sbjct: 66 VRAVRAEYG---IPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRS 121 >gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573] gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603] gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385] gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603] gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573] gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385] Length = 240 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] Length = 2035 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 2/118 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV++VEDN +N ++ ++++E G + +G EALE + D ++MD Q+ + G Sbjct: 1706 AKVLLVEDNIINQEIAKEILEREGMDIVVANHGKEALEWIEKESFDGVLMDCQMPVMDGF 1765 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ ++E +P++A+TA AM+GD+ER G +ISKPI ++ T+ K+I Sbjct: 1766 EATRLMREGGHT--LPILAMTANAMEGDKERCLACGMNDHISKPIDMAKLFITMAKWI 1821 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +++IV+DN ++ +++ + + +G AL L ++ +++++D + + Sbjct: 1557 RILIVDDNASAREILENILRSFHFNVHSVCDGHHALSLLKEAQKEPQPYNLVLIDWMMPQ 1616 Query: 59 ISGLEITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++G+E ++I+E+ Q + I +TA++ + ++ + + + + KPIS S + TI Sbjct: 1617 LNGIETIRKIREEIVSDQPLMFIMITAYSKEELQKELEELFVDGILIKPISPSTLLNTIL 1676 Query: 118 KYIGE 122 +G+ Sbjct: 1677 NVLGK 1681 >gi|37524232|ref|NP_927576.1| osmolarity response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783655|emb|CAE12507.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 239 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + +I++D+ L GL Sbjct: 6 KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESVSLIVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 VCQRLRNQSN--PVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt [Blastopirellula marina DSM 3645] gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding region,ATPase-like:Histidine kinase A, N-terminal:Hpt [Blastopirellula marina DSM 3645] Length = 837 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ EDN +N KL L+E G++ +G +A+E ++ D+++MD+Q+ + G+ Sbjct: 564 RRILLAEDNLVNQKLAVLLLEKRGHLVTVASDGKQAVEAWKEGGFDLVLMDVQMPILDGM 623 Query: 63 EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ IP+IA+TA AMKGD ER + G + Y++KPI+ + I + + Sbjct: 624 AATTEIRRHETRTALRIPIIAMTAHAMKGDRERCLEAGMDGYVTKPINAQALYDAIDEAL 683 Score = 76.3 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH----KPDVIIMDIQLQEIS 60 V+IV+DN+ ++ +++ G +EA+ L + K ++I+D Q+ + Sbjct: 421 VLIVDDNDTCGEIIAEMLANWGMQPTVIGGAVEAISLYAEEVTSPKFQLLIIDQQMPVLE 480 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ I +T + + +A +SKPI S +T+ + Sbjct: 481 GTELLERIQKSPRGAAAKSILLTTGTFDKEPTNPLQARVDAILSKPIKQSDLFDTLMNVM 540 Query: 121 G 121 G Sbjct: 541 G 541 >gi|331086531|ref|ZP_08335610.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410589|gb|EGG90017.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ + + +D + GY + +G AL + PD+I++D+ + ++ G Sbjct: 1 MYKILVVDDDIDMITMVQDYLYLKGYEIMSAFDGEMALNKIK-FAPDIILLDVNMPQMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +I+E L P+I +TA + D + + G + YI KP SL IK ++ Sbjct: 60 FEVCMKIRE---LVSCPIIFLTAREEEEDRIKGLEIGGDDYILKPFSLKELEARIKAHLN 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|294620680|ref|ZP_06699887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291599660|gb|EFF30670.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] Length = 218 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN KL +E +GY G EA ++ Q + D+ ++DI L EI G E Sbjct: 2 KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++E ++PVI +TA D + G E YI+KP L + ++ + Sbjct: 62 VFAYMRE----YDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116 >gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ ++ +++T G+ + +G A+ + R PD++++D+ L G E+ Sbjct: 2 LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLPGKDGTEVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ +S +PVI +TA + D + + G + YISKP + I+ + Sbjct: 62 RQIRAESG---VPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRR 115 >gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733] gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733] Length = 218 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN KL +E +GY G EA ++ Q + D++++DI L EI G E Sbjct: 2 KILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIMLPEIDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++PVI +TA D + G E YI+KP L + ++ + Sbjct: 62 VFAYM----WEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116 >gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] Length = 241 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED + + + + G+ +G++AL + + + D++I+D+ + + G Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +E S +P+I +TA + D+ + + G + Y++KP S + + + Sbjct: 80 FSVCKLAREMS---NMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLR 136 Query: 122 EA 123 + Sbjct: 137 RS 138 >gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM 15053] gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM 15053] Length = 233 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D+ ++ + GY L+ +G EAL++ + K D++I+D+ + + G Sbjct: 3 MSKILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKVDLLIIDVMMPRLDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E + +P+I ++A + D+ G + Y++KP + + +K + Sbjct: 63 IRATLKIREQN---NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] Length = 254 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 50/109 (45%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + +E G+ +G E E A++ PD++I D+ + G + Sbjct: 30 RLLLVDDEPGLRSAVQAYLEDEGFQITTASDGQEGWEKAQEILPDLVISDVMMPRCDGYK 89 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + K ++ D L PVI +TA M D + G + YI KP Sbjct: 90 LLKLLRTDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 138 >gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1936 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V++V+D+ N+ +E G L NG + + L + + D +++DI + + G Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDGIALLQTNPNIDAMLIDIMMPGMDGY 1854 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ S + +P+IAVTA AMKGD E+ G Y+SKPI + + ++ + Sbjct: 1855 ETMRAIRAQSAFRSLPLIAVTAKAMKGDREKCLDAGASDYVSKPIDMDQLLAVLRVQLAR 1914 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ + + +L G+ L ++G AL LA + KP I +DI L ++ G + Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +K D+ + IP+ ++ ++R + G ++ KP+ M +++ Sbjct: 1590 LDLLKNDARTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640 Score = 70.5 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 46/103 (44%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED+E L++ ALE + D I+D+ L +I G Sbjct: 1650 RNLLLVEDDENQRASITALLDEEDVKIFGVGTATAALEALTGGRFDCAIIDLGLPDIGGS 1709 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E+ ++I+ E +E+P+I T + EE+ K I K Sbjct: 1710 ELIERIRATQEGEELPIIVYTGRELTAPEEQQLKHSASTIILK 1752 >gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759] gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IV+D + + + Y L G EAL+ + PD+I++DI + +I Sbjct: 1 MKQRLLIVDDEPGIVDMMASYFSSQ-YEVLTAYCGNEALQKLARQ-PDLILLDINMPDID 58 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++I+E L P++ +TA D+ + G + YI KP L + ++ Sbjct: 59 GLTLCQKIRE---LITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAHL 115 Query: 121 GE 122 Sbjct: 116 RR 117 >gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein [Campylobacter concisus 13826] gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus 13826] Length = 219 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + ++ +GY NG EA++ D+I++D+ + + GL Sbjct: 2 KILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + + PV+ +TA D + G + Y+ KP + ++ I Sbjct: 62 FLQRSRAAKLV--TPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRR 118 >gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] Length = 239 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + +E Y + +G +AL+L Q KP +I++D L G+ Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S ++P+I +TA D G + Y++KP + + I+ + Sbjct: 67 VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122 >gi|254881220|ref|ZP_05253930.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_3_47FAA] gi|254834013|gb|EET14322.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_3_47FAA] Length = 311 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ R L + Y + NG E + +AR+ PD++I D+ + ++G E Sbjct: 51 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNGFE 109 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KED + IP+I +TA + + + G + YI KP + I +K+ I Sbjct: 110 CCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI 166 >gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED + R + +GY +G L++A ++ +II+D+ L ++G+ Sbjct: 2 KLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGIA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K +++ P++ +TA + G + Y+ KP + + I+ + Sbjct: 62 VCKALRQQQLT--TPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRR 118 >gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855] gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4] gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855] gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 229 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ + D++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM-ELTQYDLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K++ IP+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|219847372|ref|YP_002461805.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] gi|219541631|gb|ACL23369.1| response regulator receiver modulated diguanylate cyclase [Chloroflexus aggregans DSM 9485] Length = 441 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ ED KL D++ +GY NG + + A+ PD+II D+ + I GL Sbjct: 5 ARILVAEDEADVGKLLHDILTGAGYEVELVPNGDQLVRRAQAQPPDLIIADLLMPLIDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E +Q++ D+ +P++ +TA + G + YI+KP + + ++ ++ Sbjct: 65 EAIRQLRNDTRTAHLPMLILTAIGDSSRIVEGFENGADDYITKPYNRDELLARVRSHLRR 124 Query: 123 A 123 A Sbjct: 125 A 125 >gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] Length = 219 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED++ + R+ +E GY+ + +G E L D I++D+ L + G+ Sbjct: 2 RVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + D +++PV+ +TA D+ G + Y++KP + + ++ I A Sbjct: 62 VLERWRRDQ--KKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRA 119 >gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 223 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 225 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 KV++V+D KL +D + + L+ +G +A+++ ++I+D+ + ++ G Sbjct: 5 KVLVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++I+ + +P+I +TA A + DE + G + YISKP S I + ++ + Sbjct: 65 QVCREIR---GVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|218128661|ref|ZP_03457465.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] gi|217989116|gb|EEC55431.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697] Length = 1348 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN+ + + + + L+ NG +AL++ + + D++I D+ + + G++ Sbjct: 1100 KILVVDDNQELRQYLVSGLSSD-FNLLEADNGQKALDILKGQEVDLVITDVMMPVMDGVK 1158 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K IK++ IPV ++A A + + G + YI KP S+ I I+ + Sbjct: 1159 LCKAIKQNIRTCHIPVYMLSAKADTKYQLEGLQVGADDYIPKPFSMPILKTKIQNVLR 1216 >gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus] Length = 1177 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N K+ ++ G + NG ALEL + D+++MD Q+ + G Sbjct: 908 RRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELLARSSYDLVLMDCQMPVLGGY 967 Query: 63 EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T +++ + PV+A+TA A G+ E+ G + Y+SKPIS E ++++ Sbjct: 968 EATGELRAREMSAGGRRTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERW 1027 Query: 120 IG 121 +G Sbjct: 1028 LG 1029 Score = 107 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 ++V++V+DN N + + G + G AL R D++++D+ + Sbjct: 763 RRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLHMP 822 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G E+ + + + L++ P + +++ + G+ E +R G + KP+ S+ I Sbjct: 823 YMDGHELARAMNAEPGLKDTPRLLLSSGGLTGEAE-LRALGIARSLLKPVRQSLLFNAIA 881 Query: 118 KYI 120 + + Sbjct: 882 EVL 884 >gi|24372449|ref|NP_716491.1| response regulator [Shewanella oneidensis MR-1] gi|24346432|gb|AAN53936.1|AE015531_2 response regulator [Shewanella oneidensis MR-1] Length = 339 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+ +++V+D N+ + ++ Y +G AL L + PD+I++D+ + Sbjct: 1 MMDKATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVTKTLPDLILLDVMMPG 59 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ K +K++ IPVI VTA + DE + G YI+KP+S + +K Sbjct: 60 MNGYEVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPVSAPVVKARVKT 119 Query: 119 YI 120 ++ Sbjct: 120 HL 121 >gi|78046368|ref|YP_362543.1| two-component system response regulator KdpE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034798|emb|CAJ22443.1| two-component system response regulator KdpE [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 238 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ G E L L +++++DI L + G Sbjct: 11 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 71 EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 226 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++ED+ + + GY NG++ L LAR +PD++I+D L +S Sbjct: 1 MNNHILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++I +++ + P+I +TA D G + Y++KP S+ + +K + Sbjct: 61 GVDICLRLRSTGV--QTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] Length = 244 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L R + G+ L + + + D+I++D+ L GL Sbjct: 11 RIVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLMLPGEDGLS 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ +++ P+I +TA D + G + Y+ KP + + I + Sbjct: 71 ICRRLRAANDI--TPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRR 127 >gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 222 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 71/121 (58%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++EDN ++ + +E +GY AL +G+ L LAR+ PD++I+D+ L ++ Sbjct: 1 MEQRILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++++S +P+I +TA + + + G + Y++KP + +K + Sbjct: 61 GAEVTRRLRKNS---SMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|315223450|ref|ZP_07865307.1| two component system sensor histidine kinase regulator [Capnocytophaga ochracea F0287] gi|314946623|gb|EFS98614.1| two component system sensor histidine kinase regulator [Capnocytophaga ochracea F0287] Length = 1296 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+DN + D + L+ NG EAL L + H+PD+II D+ + ++G Sbjct: 1044 MYSVLLVDDNPDFLNYLYDELRPLFKSVLKAVNGEEALLLLKTHQPDIIISDVMMPVMNG 1103 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K++KE ++ IPVI +TA + ++ K G +AY+SKP + + + I + Sbjct: 1104 YQLCKEVKEHLQISHIPVILLTAKSDTESQKIGYKLGADAYLSKPFDIDLLLSVIGNLL 1162 >gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus PC510] Length = 1444 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN+ + + +E + +G+E L+ + PD+++ D + + G+E Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHLYHPDMVVTDQMMPNMDGIE 1247 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++D ++ IPVI +TA + + G AYI KP S + I++ + E Sbjct: 1248 MLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306 >gi|298490188|ref|YP_003720365.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232106|gb|ADI63242.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 227 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 65/123 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ D +E SGY + +G EAL + ++ PD+I+ DI + ++ Sbjct: 1 MALKILVVDDDLGTRLSISDYLELSGYSVIMADDGQEALAMVEENNPDLIVTDIVMPRLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++++ +E + +PVI +T + + GC+ Y+ KP L I+ + Sbjct: 61 GYELVRRVRQKAEFRLLPVILLTERTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120 Query: 121 GEA 123 + Sbjct: 121 ERS 123 >gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii DSM 18315] gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii DSM 18315] Length = 255 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++ + +E GY + EAL++ ++++D+ + EISG Sbjct: 30 MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKM-DIASYQLLLLDVMMGEISG 88 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ + +IP+I +TA + D G + YISKP S+ + +K + Sbjct: 89 FKMASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLR 148 Query: 122 E 122 Sbjct: 149 R 149 >gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] Length = 242 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+IV+D + + L +E GY +G+E E+A H D II+D+ L + G Sbjct: 1 MKKVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++I K+++++ + P++ +TA + ++ + G + Y++KP S + +K + Sbjct: 61 MDICKKLRQEKI--DAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37] gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 968 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +N + ++ G NG+EAL+ ++ D+++MD Q+ + G Sbjct: 691 KILLVEDHPVNQEFAMQILSGLGVDLHLAGNGVEALKQLKEQNYDLVLMDCQMPVMDGYR 750 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I++ + +P+IA+TA AM D +R G + Y+SKP + + + +++++ Sbjct: 751 ATELIRQKEQENGSPRLPIIALTANAMIEDRQRCISAGMDDYLSKPFNKAQIVVLLQRWL 810 >gi|15892244|ref|NP_359958.1| response regulator PleD [Rickettsia conorii str. Malish 7] gi|15619381|gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia conorii str. Malish 7] Length = 450 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D+I++D+ + E+ G Sbjct: 1 MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 CEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 67.8 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLRR 270 >gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1681 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+LN +L +L+ +G +G+EA++ Q D ++MD Q+ + G E Sbjct: 1345 VLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIDRIEQQYFDCVLMDCQMPVLDGYEA 1404 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+E + +P++A+TA AM GD E+ G I+KP+ + + ++I Sbjct: 1405 TRRIRELPQFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMARWI 1460 >gi|313159142|gb|EFR58517.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 392 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ V+D N+ L + ++ + Y + G EA+E A + PD+I++DI + ++ G E Sbjct: 12 TILAVDDIATNIMLLKAVLSRAKYKIVTASGGYEAIEKASKEAPDLILLDIMMPDLDGYE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K +K D Q+IPVI +TA D + K G Y+SKP + + + +I Sbjct: 72 VIKHLKADPATQDIPVIFLTALHNPEDIVKGFKLGASDYVSKPFNHEELITRVTHHI 128 >gi|239833976|ref|ZP_04682304.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822039|gb|EEQ93608.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 461 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + DV+++DI + ++ Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVTAHSGPEAIEICLGGQIDVVLLDILMPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K+D IPV+ VT+ D+ R + G + ++ KP+S M +K Sbjct: 61 GFEVCRRLKDDPRTSNIPVVIVTSLDGAEDKIRGLEAGADDFLFKPVSDLQLMSRVKSLA 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 80.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IV+++EL R ++ + Y + AL A D I++ L Sbjct: 160 ARILIVDEDELAAARLRLILGET-YRVDVASDANTALIRAIDTDYDSIVVSANFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q++ + +P+I V R + G Y+ +P+ ++ I Sbjct: 219 RLCSQLRTIERTRLVPIILVVREDEGALVVRALELGVNDYLMRPLEKLELFARLRTQIKR 278 >gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 7 RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062] Length = 964 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++I ED E N + R ++ G + NG+EAL+ ++ +PD+++MD+ + E+ GL Sbjct: 718 AKILIAEDIETNRFILRSMLIKLGMSVFEAHNGLEALDQLQRERPDLVLMDVSMPEMDGL 777 Query: 63 EITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI++ D+ L P+IA TA + D ++ ++ G + +++KP + + ++ + Sbjct: 778 EATRQIRKLADTALASTPIIATTAHVIGVDADKCKEAGMDGFLAKPFEQAELHQILRSVL 837 >gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1] gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1] Length = 232 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S + +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 120 >gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 1132 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D E N LF ++ + ++ NG++A++ + + D++ MD+Q+ E+ G Sbjct: 1012 KILIADDTEDNRTLFTHYLKNEPFEIIEAENGLQAIDQIKSGEFDIVFMDVQMPEMDGYA 1071 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T +I+E + +P+IA+TA A+ D ++ + GC +I+KP + I KY Sbjct: 1072 ATDRIREWEKESHKPPVPIIALTAHALAEDRQKSLRAGCNDHIAKPFKKDTLLGVINKY 1130 >gi|186683397|ref|YP_001866593.1| AraC family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465849|gb|ACC81650.1| two component transcriptional regulator, AraC family [Nostoc punctiforme PCC 73102] Length = 272 Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I+ED +L ++ D +E+ G+ + +NG ++ +H+PD+ I DI + E+ G Sbjct: 1 MIKVLIIEDEQLTREMLLDYLESEGFETMSAKNGRIGVQKVHEHRPDLAICDIMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K + ++ IP I +T + K + + G Y+ KP + + I + Sbjct: 61 YGVLKTLHQNPTTAVIPFIFLTGKSNKAEIRQGMALGASDYLIKPFTPEELLGAIAAQL 119 >gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 840 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++ ED+++N L L+E G+ NG EA+E ++ D+++MD ++ E+ G Sbjct: 710 RKILLAEDDQINQILAMSLLERRGHKVTAVENGREAIEALQRECFDLVLMDARMPEMDGE 769 Query: 63 EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+ I+E + + IP+IA+TA+A+KGD ER G + YI+KP+ L + + K Sbjct: 770 EATRIIRESTPPGVDKNIPIIALTAYALKGDRERFLAAGMDDYIAKPLDLEELDKVLAKV 829 >gi|320156983|ref|YP_004189362.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O] gi|319932295|gb|ADV87159.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O] Length = 242 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQLQEISG 61 ++++V+D+ +L + + +GY +G + L+ LA P+++++DI L G Sbjct: 6 RILVVDDDSEIRELLDEYLSRNGYQVATVADGHQ-LKHYLAENGYPELVLLDIMLPGEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ +S +P+I +TA + + D+ + G + YI+KP + + IK + Sbjct: 65 FSLCQFMRRES---TVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv. albensis VL426] gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv. albensis VL426] Length = 240 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + ++ GY L+ NG +E+A + + D++++DI L EI+G Sbjct: 1 MIKILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++I+ S +IPVI +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRIRRSS---DIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 1061 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 72/117 (61%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN LN ++ + L++T G NG EAL LA Q PD+++MDIQL + GLE Sbjct: 774 RVLVVEDNSLNQEIAQTLLQTWGCAVTLADNGSEALALAAQALPDLVLMDIQLPGMDGLE 833 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++++ +P++A+TA A+ GD E G + YI+KPI +++++ Sbjct: 834 TSRRLRQLPGAARLPIVALTANALPGDREAYLAAGMDDYIAKPIDPRQLYLLLQRWL 890 >gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 232 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G+EALEL ++ D+II D+ + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ E P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 225 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED++ + G+ G + L R+ +PD+I++D+ L I G Sbjct: 1 MPSLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 FEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] Length = 248 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ L + G+ G+ A+ A++ PDVI++DI L + GLE Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 78 VMRRVR--GHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 >gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ ++ GY L+ +G EALE+ ++++ ++IMD+ + + G Sbjct: 5 MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVLKENEVHLLIMDVMMPRLDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E+S IP+I ++A D+ G + Y+ KP + + +K + Sbjct: 65 IRATLKIREES---SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 245 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ + + G++ +G A++ A +PD++I+DI L GL Sbjct: 19 RRVLVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 79 EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135 >gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 226 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 61 GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254474205|ref|ZP_05087596.1| two component response regulator [Pseudovibrio sp. JE062] gi|211956735|gb|EEA91944.1| two component response regulator [Pseudovibrio sp. JE062] Length = 123 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 90/120 (75%), Positives = 104/120 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E GY LQ+RNGMEALELAR HKPD+I+MDIQL E+S Sbjct: 1 MQKTVLIVEDNELNMKLFNDLLEAHGYATLQSRNGMEALELARAHKPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK IKED EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ET+ ++ Sbjct: 61 GLEVTKWIKEDDELKIIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVGNFLETVSGFL 120 >gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1] gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1] Length = 1838 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1718 KVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1777 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1778 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLSVMEQWMR 1836 >gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium jeikeium K411] gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium jeikeium K411] Length = 225 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ +++ G+ + +G+EA++ A +H PD+I++D+ L ++ Sbjct: 1 METKILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G+++ K I+E +P++ +TA D + G + Y+ KP Sbjct: 61 GIDVCKAIRE---TSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKE 108 >gi|332708874|ref|ZP_08428845.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya majuscula 3L] gi|332352416|gb|EGJ31985.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya majuscula 3L] Length = 381 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I++D+ L + + GY NG E L + +P ++I D + ++G Sbjct: 1 MNQILIIDDDPAMQMLLKRALCHQGYEVAVASNGEEGLVQVEKLRPALVICDWIMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ +Q+K L I VT+ D G + ++ KPI ++ ++ + Sbjct: 61 LDVCRQLKVTPGLSTTIFILVTSRNSIEDRVEGLDAGADDFLCKPIEIAELNARVRAGLR 120 >gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679] gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679] Length = 233 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + L ++ GY + G EAL+ + D+ ++D+ L +I Sbjct: 1 MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E+ PVI +TA D+ G + YI+KP + + +K + Sbjct: 61 GFKIVQKIRENHFF---PVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 223 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 ++KV+++ED E + + +E +GY L NG LE +K +I++DI L +IS Sbjct: 1 MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+E S+ +PV+ +TA + D+ + G + Y+ KP S + +K + Sbjct: 61 GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117 Query: 121 GE 122 Sbjct: 118 AR 119 >gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] Length = 242 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S + +K + Sbjct: 76 CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 130 >gi|188580175|ref|YP_001923620.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium populi BJ001] gi|179343673|gb|ACB79085.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium populi BJ001] Length = 457 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D N++L + + NG +AL + + DV+++D+ + + Sbjct: 1 MSARVLIVDDLYPNVRLLETKLSLEYFDVAVAMNGPDALAICEKGACDVVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + +PV+ VTA D R G + +++KPI + M ++ + Sbjct: 61 GFEVCRRLKSNPVTAHLPVVIVTALDQPADRLRGLDAGADDFLTKPIDDTALMTRVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 80.6 bits (199), Expect = 8e-14, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 1/112 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED + + + + AL A + D+ ++ + L+ GL Sbjct: 156 ARILLVEDRPSAIDRIGTALSQH-HQVTVETDPHRALVRAPEGGFDLALVSLDLEGFDGL 214 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + QI+ + + +I + K R G Y+ +PI + + Sbjct: 215 RLCSQIRSLERTRNMALIMIGEMHEKARITRGLDFGVNDYLLRPIDRNELIA 266 >gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185] gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195] gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223] gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 241 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|99082727|ref|YP_614881.1| response regulator receiver modulated serine phosphatase [Ruegeria sp. TM1040] gi|99039007|gb|ABF65619.1| Phosphoserine phosphatase rsbU [Ruegeria sp. TM1040] Length = 423 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ L ++ ++ G+ ++ +G +A+++ R PD+I+ D + ++G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADPPDLILSDWMMPGMNGI 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119 E + + DS I +T+ + K + G + +++KP+S I ++ Sbjct: 79 EFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138 Query: 120 IG 121 + Sbjct: 139 LR 140 >gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71] gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71] Length = 258 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E +L +E L G +AL+LA + D+I++D++L + GL+ Sbjct: 23 RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGLD 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +Q++E + P++ +TA + + D + G + Y+SKP S K + Sbjct: 83 ICRQLRERGNI--TPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRR 139 >gi|84393277|ref|ZP_00992038.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01] gi|84376102|gb|EAP92989.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01] Length = 222 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V++V+D+ +L +++E GY G ALE + H D++++D+ L +S Sbjct: 1 MMSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSHPVDLVLLDVMLPNLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++I + P++ +TA + G + YI+KP ++ + IK + Sbjct: 61 GIQVARRICQRFAT---PILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] Length = 221 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L+R ++E +G+ + NG +AL+ ++II D+ + E+ G Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ + ++PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|255731748|ref|XP_002550798.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404] gi|240131807|gb|EER31366.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404] Length = 1128 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 8/127 (6%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G Sbjct: 870 SYKILLAEDNLVNQKLAVRILEKQGHQIEVVENGLEAYEAIKKNKYDVVLMDVQMPVMGG 929 Query: 62 LEITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 E T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M Sbjct: 930 FEATEKIRQWEKKSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLM 989 Query: 114 ETIKKYI 120 +TI K I Sbjct: 990 QTINKCI 996 >gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1] gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1] gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293] gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293] Length = 242 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S + +K + Sbjct: 76 CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 130 >gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ + L +D +E GY + +G EAL + Q P++II D+ + E+ G Sbjct: 12 KKLLLVDDDPNLVLLVKDYLELQGYQVVTASHGREALRILEQGIPNMIICDVMMPEMDGY 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K ++++ Q IPV+ ++A D G + Y+ KP + I+ + + Sbjct: 72 TFVKSVRDNPRTQWIPVLFLSAKGQIQDRVIGLNTGADVYMVKPFEPDELIAQIEASLKQ 131 Query: 123 A 123 A Sbjct: 132 A 132 >gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ ++ G+ +G AL A +P VI++D+ + + GL Sbjct: 8 RVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVMMPGMDGLA 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++KE E +++ VI +TA D G + Y++KP S + I+ + Sbjct: 68 VCRRLKE--EGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLR 123 >gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 256 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D + L + ++ G+ NG ALE+A ++PD I+D+ + + G Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + P + +TA D G + Y++KP SL + ++ + Sbjct: 91 LLNKLRE--AGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 147 >gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1238 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL+ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E E+P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229 Score = 97.5 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + L + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 236 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I+ Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 71 GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia stuttgartiensis] Length = 542 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 76/118 (64%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDNE N+ + +++E + + RNG EA+E+A+QHKP++I+MDI++ + GL Sbjct: 421 RRILIVEDNERNLAMTVEMLEVHNHQVVVARNGQEAIEMAKQHKPELILMDIRMPVMDGL 480 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++++ E P+IA+TA E+ GC A+++KPI + +KKY+ Sbjct: 481 EATQRLRAIPEFVNTPIIAMTASTGAEAEKTYLAKGCTAHLAKPIHVKQLYAVLKKYL 538 >gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus capsulatus str. Bath] Length = 1177 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N K+ ++ G + NG ALEL + D+++MD Q+ + G Sbjct: 908 RRVLVVEDNRVNQKVIVAMLGKFGIVPDVADNGQAALELLARSSYDLVLMDCQMPVLGGY 967 Query: 63 EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T +++ + PV+A+TA A G+ E+ G + Y+SKPIS E ++++ Sbjct: 968 EATGELRAREMSAGGRRTPVVALTAHAATGEREKCLAAGMDDYLSKPISRDRLAEALERW 1027 Query: 120 IG 121 +G Sbjct: 1028 LG 1029 Score = 107 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 ++V++V+DN N + + G + G AL R D++++D+ + Sbjct: 763 RRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLHMP 822 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G E+ + + + L++ P + +++ + G+ E +R G + KP+ S+ I Sbjct: 823 YMDGHELARAMNAEPGLKDTPRLLLSSGGLTGEAE-LRALGIARSLLKPVRQSLLFNAIA 881 Query: 118 KYI 120 + + Sbjct: 882 EVL 884 >gi|21230642|ref|NP_636559.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769363|ref|YP_244125.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112226|gb|AAM40483.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574695|gb|AAY50105.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1046 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 926 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 985 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D E + G YI+KPI + + + + Sbjct: 986 TAMRQIRANRQWQDLPIIALTAKAMADDREHCLQAGANDYIAKPIDVDKLVSLCRVWCSR 1045 Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED + DL + + N EAL LA + +P I++DI L + SGL + Sbjct: 660 ILAVEDETRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 719 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K + + IPV V+A + + G Y+ KP + + I++ Sbjct: 720 LERLKRNPATRHIPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 771 Score = 70.2 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ L+ + EA++ D ++ D+ L + SG Sbjct: 780 RRLLIVEDDSALRANLELLLARDQLEIVAVGTIAEAMDQLGSATFDCMVTDLALPDGSGY 839 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 840 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 899 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 900 SVEASLPSDQQRLLREA 916 >gi|332534765|ref|ZP_08410592.1| chemotaxis response regulator protein-glutamate methylesterase CheB [Pseudoalteromonas haloplanktis ANT/505] gi|332035789|gb|EGI72274.1| chemotaxis response regulator protein-glutamate methylesterase CheB [Pseudoalteromonas haloplanktis ANT/505] Length = 330 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D N+K+ R+++ Y ++G AL L + P +I++DI + +++G E Sbjct: 9 RVLIVDDEPANLKVMREVLGNQ-YRMSFAKSGDAALALLEKELPKLILLDIMMPDMNGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K + + IP+I VTA + DE + + G YI+KPIS +I + ++ Sbjct: 68 VCQIVKRNPKTSHIPIIFVTALGDESDEYKGFELGAVDYITKPISPAIVRARVNTHL 124 >gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 225 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I +D+ +L + ++T GY L +G EA L + + + ++D+ + G Sbjct: 1 MIHILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVMMPNKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+ ++PVI +TA D+ER G + Y++KP + IK + Sbjct: 61 YQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|329960508|ref|ZP_08298896.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328532738|gb|EGF59525.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 375 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 61/113 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + PD+I++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFTIATASNGRQALEQVDKENPDLILLDVMMPDLSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +Q+K + EIP+I +TA D + + G +ISKP + + + Sbjct: 71 VAQQLKANPATAEIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRV 123 >gi|299147304|ref|ZP_07040369.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] gi|298514582|gb|EFI38466.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23] Length = 1339 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED+E + +++RNG EALE + PD++I DI + E+ GL Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQTFKKAPDLVISDIMMPEMDGLT 1142 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +TA + D G +AYI KP ++ I +T++ I Sbjct: 1143 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199 >gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 229 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++ +D++ ++L + GY A++ +G EAL R +++I+DI + E+ G+ Sbjct: 2 KILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+++++S+ IP+I +TA D+ R G + Y++KP + M +K + Sbjct: 62 QVVKELRKESQ---IPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 118 >gi|237723330|ref|ZP_04553811.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447852|gb|EEO53643.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 960 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DN L+ T Y ++ +G E + A ++ PD+II D+ + + G+E Sbjct: 715 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGMDGIEC 773 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 774 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 829 >gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25] gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25] Length = 223 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ GY R+G++ L A + DVI++D+ + ++ G E+ Sbjct: 3 ILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMDGWEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++++ + PV+ +TA D + + G + Y+ KP S + + ++ Sbjct: 63 LRRLRKE---ADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRR 117 >gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 238 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ GY G+ ALE PD I++D+ + E+ G+E+ Sbjct: 15 LVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPELDGVEVC 74 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ + PV+ +TA GD G + Y+ KP +L+ ++ + + Sbjct: 75 RRLRGVGD--HTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRS 130 >gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621] gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621] gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1067 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N ++ L+ G+ A +G EA+ L + D+I+MD+Q+ + GL Sbjct: 801 RILVVEDNPINQQVAVGLLAKLGHRADVADDGAEAVALVERGDYDLILMDMQMPRMDGLT 860 Query: 64 ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + E+ +IA+TA AM+GD + G Y++KPI ++++I Sbjct: 861 ATGIIRRLPAGKGEVTIIAMTANAMEGDRDACLAAGMNDYLAKPIDRHRLAAVLQRWI 918 Score = 95.6 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 60/128 (46%), Gaps = 9/128 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQ---TRNGMEALELAR--QHKPDVIIMDIQLQ 57 ++++V+DN N ++F+ +E G G+ A+ A+ H ++++D + Sbjct: 653 ARILVVDDNATNREVFQHQLENWGAQVDLVDGAAGGLMAIRQAQHSAHPYQLVLLDHHMP 712 Query: 58 EISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMET 115 +SGL++ ++ D ++ V+A +A + + + +SKP+ S ++ Sbjct: 713 GMSGLDLAAVVRADPTTADLKLVLASSANPSDFRQLNASLRL--DDVLSKPVRQSALLDC 770 Query: 116 IKKYIGEA 123 + +G + Sbjct: 771 LMSRLGRS 778 >gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 227 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED E L RD + +G+ G EA R+H PD++++D+ L Sbjct: 1 MTGTILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K ++ +P+I +TA + D + G + YI KP S + +K + Sbjct: 61 GLEICKDVR---VFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121] Length = 916 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 73/116 (62%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+ V+DN++N++L + + +G AL+L + + D+I+MDIQ+ E+ G+E Sbjct: 673 KVLAVDDNQINLQLVSHWLTPNNIDVSLAHSGQAALDLCAREQFDLILMDIQMPEMDGME 732 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+++++ IP+IA+TA A+ +++ I K G AY++KP++ S +E I+ + Sbjct: 733 TTRRLRQHKNTTLIPIIALTAHALSSEKQEILKSGMNAYLTKPVNESKLLEVIQDW 788 >gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 238 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED + R + G T G L+++ + + D++I+D+ L +I G+ Sbjct: 11 HILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGMV 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ S +P+I +TA + + + G + YI KP S + + + A Sbjct: 71 VCRRLRARSST--LPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRA 128 >gi|26989126|ref|NP_744551.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148548500|ref|YP_001268602.1| two component transcriptional regulator [Pseudomonas putida F1] gi|24983960|gb|AAN68015.1|AE016434_6 DNA-binding response regulator OmpR [Pseudomonas putida KT2440] gi|148512558|gb|ABQ79418.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 246 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L + ++ +G +G + + D+I++DI + GL Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA + D + G + Y++KP S + I + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123 >gi|262382643|ref|ZP_06075780.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262295521|gb|EEY83452.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 1369 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++ VEDNE + + +T Y + +NG LE A + PDVI+ D+ + ++G+ Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMNGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + +K D IPVI +TA A + + G + Y+ KP SL++ IK + Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224 Query: 123 A 123 + Sbjct: 1225 S 1225 >gi|256838865|ref|ZP_05544375.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] gi|256739784|gb|EEU53108.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] Length = 1369 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++ VEDNE + + +T Y + +NG LE A + PDVI+ D+ + ++G+ Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMNGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + +K D IPVI +TA A + + G + Y+ KP SL++ IK + Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224 Query: 123 A 123 + Sbjct: 1225 S 1225 >gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 224 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E G+ + +G+EA++ A + PD+I++D+ L +S Sbjct: 1 MSSKILVVDDDPAIAEMLTMVMEREGFDTVVVDDGLEAVKAAERENPDLILLDLMLPGMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G+++ + ++E +P+I +TA D + G + Y++KP Sbjct: 61 GVDVCRTVRE---TSAVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKE 108 >gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 251 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 13 KRVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLMLPGVDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 73 EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|294777579|ref|ZP_06743030.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294448647|gb|EFG17196.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1357 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++EDNE L Y + NG E +++A PD+II DI + G Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAMSKIPDLIISDIMMPVKDGFTCC 1166 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E IP++ +TA A D + K G + Y+ KP + + ++ I Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221 >gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510] gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510] Length = 310 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M ++ +++V+D + + IE + L +G ALEL Q PD+I+MD + Sbjct: 1 MKRRDMILVVDDTPDTLGFLTEAIEQADLTVLVAIDGESALELVGQITPDLILMDAVMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E +++K+ L IPVI +T + + + G Y++KPI + + I+ Sbjct: 61 LDGFETCRRLKQIPHLSHIPVIFMTGLSDTEHVVKGLEAGGVDYVTKPIVVDELIARIRV 120 Query: 119 YI 120 ++ Sbjct: 121 HL 122 >gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++I+ED+E + + +E Y L+ NG +A++ + PD++I+D+ L +I G Sbjct: 1 MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVKQ-PDLVILDLMLPDIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I K I++ P+I +TA D+ G + YI+KP + + +K + Sbjct: 60 LSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|126662822|ref|ZP_01733821.1| two-component system response regulator [Flavobacteria bacterium BAL38] gi|126626201|gb|EAZ96890.1| two-component system response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 4/124 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++ VED+E L D +E + NG EA +L + D+ ++DI L ++ Sbjct: 1 MSKKRILYVEDDETLAFLTADNLEQH-FDVTHCNNGKEAFQLFCKETFDLCVLDIMLPDM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI +I++ + QEIP+I ++A MK D + K G + Y+ KP S+ + I+ + Sbjct: 60 DGFEIATEIRKRN--QEIPIIFLSAKTMKEDRIKGLKLGADDYLVKPYSIEELILKIEIF 117 Query: 120 IGEA 123 + + Sbjct: 118 LNRS 121 >gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED K + G+ ++ +G EAL++ + +P V+++D+ L I G E Sbjct: 6 KVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLPGIDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ + I +I +TA + D+ + G + Y+ KP + + I+ + + Sbjct: 66 VCQNIRK--SIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRK 122 >gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED + L R +E +GY L +G L + R + D++I DI L ++ G Sbjct: 1 MYSILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ IP++ +TA D+ G + Y+ KP I+ + Sbjct: 61 FELCKEIRA--ANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|148257460|ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409633|gb|ABQ38139.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 246 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ L + + +G E + H+ D++I+D+ L GL Sbjct: 7 HILVVEDDRETRTLIAKYLRNNSCNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S+ +P+I +TA D + G + Y+ KP + + I + Sbjct: 67 LCRKLRAESQ---VPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRR 122 >gi|317475679|ref|ZP_07934939.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908135|gb|EFV29829.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1354 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ + + L+ NG EALE + ++ D+II D+ + + G++ Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1163 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A D+ + G + YI KP ++++ I+ + Sbjct: 1164 LCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMR 1221 >gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913] gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913] Length = 239 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D++ L + G+I + + L + ++++D+ L GL Sbjct: 7 KVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQMDRLIERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ +IP++ +TA + D + G + YI KP + + IK + Sbjct: 67 ICRRLRQKEN--QIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123 >gi|313499514|gb|ADR60880.1| OmpR_2 [Pseudomonas putida BIRD-1] Length = 246 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L + ++ +G +G + + D+I++DI + GL Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA + D + G + Y++KP S + I + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123 >gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 231 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IVED+ +L ++ +G+ G E L LA + D+ ++D+ L ++ G Sbjct: 6 ARILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T +++E +E+P++ +TA D + G + YI+KP SL + I+ + Sbjct: 66 AVTSRLRE--GGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRR 123 >gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 231 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++ +D+ ++ + G+ ++ +G+EALEL + H+ +++I+D+ + + G Sbjct: 1 MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 61 IRTTLKVRE---TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 242 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED +L D ++ + Y NG + ++ RQH P +I++D+ L Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHSPSLILLDLMLPGCD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I++ +P+I VTA + + D + G + YI KP S + ++ + Sbjct: 69 GLTLCRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621] gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621] Length = 233 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L + +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120 >gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++ED + ++ G+ +G E LELA + D+I++D+ L ++ Sbjct: 1 MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ + P++ +TA D G + YI KP ++ + I+ Sbjct: 61 GMEVCRRIRA---AKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218128498|ref|ZP_03457302.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697] gi|217989389|gb|EEC55702.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697] Length = 1354 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ + + L+ NG EALE + ++ D+II D+ + + G++ Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1163 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K +K++ IPVI ++A D+ + G + YI KP ++++ I+ + Sbjct: 1164 LCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMR 1221 >gi|187933060|ref|YP_001885916.1| metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation [Clostridium botulinum B str. Eklund 17B] gi|187721213|gb|ACD22434.1| metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation [Clostridium botulinum B str. Eklund 17B] Length = 302 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 66/116 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I++DN+ N ++ +DL+ T GY +G + ELAR KPDVI++D+ L ++G Sbjct: 1 MGKVLIIDDNKQNCEIIKDLLYTWGYCVYLAFDGFDGFELARSVKPDVILLDVMLPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E K++KE E Q IP+I +T + D R G + ++SKPI I Sbjct: 61 FEACKKLKETEETQNIPIIMLTVLSEVEDRIRGFNVGADVFLSKPIVYQELKNRIN 116 >gi|163794009|ref|ZP_02187982.1| regulatory components of sensory transduction system [alpha proteobacterium BAL199] gi|159180623|gb|EDP65142.1| regulatory components of sensory transduction system [alpha proteobacterium BAL199] Length = 326 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 V++V+D N+ L L++ Y G AL +A PD++++D+ + + G Sbjct: 10 TVLVVDDTPDNLVLMSGLLKDH-YRVKVANGGERALTIAATAPQPDIVLLDVMMPGLDGY 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K +IPV+ +TA + + DE R + G YI+KPIS I + + ++ Sbjct: 69 EVCRRLKAHPSTSDIPVVFLTARSDQADERRGLELGAVDYITKPISPPIVLARVHNHL 126 >gi|150010055|ref|YP_001304798.1| two-component system sensor histidine kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938479|gb|ABR45176.1| two-component system sensor histidine kinase/response regulator, hybrid [Parabacteroides distasonis ATCC 8503] Length = 1369 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++ VEDNE + + +T Y + +NG LE A + PDVI+ D+ + ++G+ Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKALEILPDVIVSDVMMPVMNGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + +K D IPVI +TA A + + G + Y+ KP SL++ IK + Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224 Query: 123 A 123 + Sbjct: 1225 S 1225 >gi|86609394|ref|YP_478156.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557936|gb|ABD02893.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 125 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D+ ++ L+ +G +G+EA+E RQ KPDV+++DI + ++G Sbjct: 1 MSKVLVVDDSRTYLETISSLLSENGLEVSTATDGVEAMECIRQQKPDVVVLDIVMPRMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K D + I ++ + D E R+ +AY++KP + TIK + Sbjct: 61 YEVCREVKGDESTKHIRIVMCSTKDQTFDIEWARRNQADAYVTKPFKPQELLATIKHQLR 120 Query: 122 E 122 E Sbjct: 121 E 121 >gi|83594261|ref|YP_428013.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577175|gb|ABC23726.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 250 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + R +E +G + R+G AL+L PD++++D+Q+ + G + Sbjct: 23 ILVVEDEPDIADILRAYLERAGMRVVSARDGRRALDLHASLNPDLLLLDVQMPVMDGWRV 82 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ + PVI +TA D+ + G + Y+ KP + + + ++ + Sbjct: 83 LSELRHRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVRAVLRR 137 >gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262] gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262] Length = 231 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++ + L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRNNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|282878424|ref|ZP_06287210.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] gi|281299410|gb|EFA91793.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] Length = 231 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + ++ + +ET GY+ + EA+ + +++++D+ + E+SG Sbjct: 7 RILVVDDEQDLCEILKFNLETEGYVVETANSAEEAM-MMDISSFNLLLLDVMMGEMSGFS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++KE+ + IP+I +TA + D G + YISKP S+ + I+ I Sbjct: 66 MAKKLKENPKTASIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124 >gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 7 RLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] Length = 235 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 4/118 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ + R L+E GY + NG LE ++ ++I+DI + ISG+ Sbjct: 6 ILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT-HLVILDIMMPGISGIRT 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ + +PV+ +TA + D+ G + Y+ KP S + + +K + Sbjct: 65 CEEIRK---VSNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLRR 119 >gi|209523104|ref|ZP_03271660.1| histidine kinase [Arthrospira maxima CS-328] gi|209496255|gb|EDZ96554.1| histidine kinase [Arthrospira maxima CS-328] Length = 410 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E N +L + G+ L+ NG EA+ + Q +P +I MD+++ + G E Sbjct: 203 RILVVDDRESNQQLLVKFLIPVGFEVLEAENGQEAIAIWNQWEPHLIWMDMRMPVMDGYE 262 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 TK+IK + Q +IA+TA A + + E + GC+ ++ KP I E + K++G Sbjct: 263 ATKRIKSHLKGQATVIIALTASAFEEEREVVLSAGCDDFVRKPFEEQILFEKMAKHLG 320 >gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 238 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED+ + L ++ +G+ ALE A+ D+I++D+ + +++ Sbjct: 6 MANQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ + P+I VTA + D+ + G + YI+KP S+ K + Sbjct: 66 GVEVCRELRK---TKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVM 122 Query: 121 GEA 123 + Sbjct: 123 RRS 125 >gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023] Length = 231 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + +++ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++ + L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRNNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L ++ GY + +G+EA + Q + I+D+ + +G Sbjct: 1 MAAILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVMMPNKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+E L ++P++ VTA D+ + + G + YI KP + +K + Sbjct: 61 WELCKEIRE---LYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 238 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED + + ++ GY L NG E L+L + + I+DI + + Sbjct: 1 MEHTVLVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDVHLAIVDIMMPIMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +T +++++ + PVI ++A + D+ G + Y++KP + ++ + Sbjct: 61 GITMTMELRKNYDF---PVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|291278594|ref|YP_003495429.1| twitching motility two-component system response regulator PilH [Deferribacter desulfuricans SSM1] gi|290753296|dbj|BAI79673.1| twitching motility two-component system response regulator PilH [Deferribacter desulfuricans SSM1] Length = 119 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 72/119 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I ED+ ++ + +E G+ + +G ALE ++ + DVII+D+ + +G Sbjct: 1 MKKILIAEDSSTEREIMKKALEAEGFTVVAVADGDAALEEVKKSEYDVIILDVIMPGKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ ++IK D L++ PVI VT+ + D+ ++ G + YI KP ++ + + T+K+++ Sbjct: 61 YQVCREIKRDELLKDTPVIIVTSKGQESDKFWGKRQGADEYIVKPFNVDLLISTVKRFL 119 >gi|254881160|ref|ZP_05253870.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 4_3_47FAA] gi|254833953|gb|EET14262.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 4_3_47FAA] Length = 1357 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++EDNE L Y + NG E +++A PD+II DI + G Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAMSKIPDLIISDIMMPVKDGFTCC 1166 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E IP++ +TA A D + K G + Y+ KP + + ++ I Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221 >gi|167644818|ref|YP_001682481.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347248|gb|ABZ69983.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 859 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ +N ++ + + ++ NG EAL+ D+++MD+ + + GL Sbjct: 722 RRVLVVDDHPVNRRVIKLFLAPFDCDLVEVENGREALDALEAEPFDLVLMDVNMPVMDGL 781 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++++ D +PVIA+TA M+ + + G +A+I+KPI L + + + + Sbjct: 782 EATRRLRRDPRWMTLPVIALTADVMRSQIDTCLEAGMDAHIAKPIDLRDLLSVMVQVL 839 >gi|88861074|ref|ZP_01135709.1| osmolarity response regulator [Pseudoalteromonas tunicata D2] gi|88817002|gb|EAR26822.1| osmolarity response regulator [Pseudoalteromonas tunicata D2] Length = 241 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GYI N + L + ++++D+ L GL Sbjct: 9 KILVVDDDMRLRSLLERYLVEQGYIVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ +IP++ +TA + D + G + YI KP + + IK + Sbjct: 69 ICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 125 >gi|325925213|ref|ZP_08186624.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325544380|gb|EGD15752.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 238 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ G E L L +++++DI L + G Sbjct: 11 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 71 EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1317 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 65/119 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + N L L+ G + NG EA++L ++ +PD+ MDI++ + G Sbjct: 1101 RRILVVDDRQENRLLIIKLLSQLGLEIREATNGQEAVKLWQEWEPDLTWMDIRMPVLDGY 1160 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+QI+ E + +IA+TA A + D GC YISKP +++Y+G Sbjct: 1161 EATRQIRAMEENKNGIIIALTAQASQSDRSLALAAGCNDYISKPFREETLFIKMREYLG 1219 >gi|283780370|ref|YP_003371125.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] gi|283438823|gb|ADB17265.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] Length = 236 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 71/123 (57%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K KV+++ED+ ++ ++ +GY L +G + L A+ PD++++D+ L I Sbjct: 1 MAKTKVLVIEDDRSLAEVLSYNLKQAGYEVLTASDGQDGLLQAQLKTPDIVLLDLMLPVI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL++ ++++ DS ++++ +I +TA A + DE G + Y++KP S+ + +E +K Sbjct: 61 DGLDVCRRLRADSSMRDLLIIMLTAKAEETDELVGFSLGADDYVAKPFSVKVLLERMKAL 120 Query: 120 IGE 122 Sbjct: 121 RRR 123 >gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 237 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + L + + +G EAL LA + PD++++D+ L ++ G + Sbjct: 7 RVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPDLDGFQ 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +PV+ +TA + D G + Y+SKP SL + I+ + + Sbjct: 67 VAQRLR--DVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRS 124 >gi|114569826|ref|YP_756506.1| response regulator receiver protein [Maricaulis maris MCS10] gi|114340288|gb|ABI65568.1| response regulator receiver protein [Maricaulis maris MCS10] Length = 144 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 79/120 (65%), Positives = 105/120 (87%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLF DL+E GY LQT++G +ALE+AR+H PD+I+MDIQL E+S Sbjct: 24 MPKKVLIVEDNELNMKLFNDLLEAHGYETLQTKDGFKALEMAREHTPDLILMDIQLPEVS 83 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+TK +K+D L IPV+AVTAFAMKGDEERIR+GGCEAY+SKPI+++ F++T+++++ Sbjct: 84 GLEVTKWLKDDDSLAAIPVVAVTAFAMKGDEERIREGGCEAYLSKPITVATFIQTVRQFL 143 >gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes] Length = 232 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 3 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 63 GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 232 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL-ARQHKPDVIIMDIQLQEISGL 62 +V++V+D + ++L ++ Y LQ +G+EAL+L A+ D++++DI + + +GL Sbjct: 2 RVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNGL 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ PVI +TA A D+ G + Y++KP + + IK Sbjct: 62 EVLEEIRKQGL--NFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRR 119 >gi|237726077|ref|ZP_04556558.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. D4] gi|229435885|gb|EEO45962.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides dorei 5_1_36/D4] Length = 1357 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++EDNE L Y + NG E +++A PD+II DI + G Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAENGEEGVDVAISKIPDLIISDIMMPVKDGFTCC 1166 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E IP++ +TA A D + K G + Y+ KP + + ++ I Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221 >gi|222054940|ref|YP_002537302.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221564229|gb|ACM20201.1| GAF sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 1215 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++ + ++ NG EAL ++H D+++MDI + E+ G Sbjct: 1093 KKVLLVDDDMRNIFSLTSILAEKHMVVVEAENGREALARLQEHPDVDLVLMDIMMPEMDG 1152 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ D + +IA+TA A+KGD+E+ + G YISKPI + + ++ ++ Sbjct: 1153 YETIRTIRNDPHFSRLSIIAMTAKALKGDQEKCLEAGASDYISKPIEVEKLLSLMRVWL 1211 Score = 122 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++++ED+ ++ +++ G+ AL NG + L LA PD II+D+ L + G Sbjct: 825 RSILLIEDDLNFARILMEMVRERGFAALAAANGEDGLYLADHCLPDAIILDVMLPHVDGW 884 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS---IFMETIKKY 119 + + +KE+ + IPV +T D ++ G ++SKP+ TI+ Sbjct: 885 GVMRLLKENPRTRHIPVHFLTCL---EDRQKAMSMGAIGFVSKPVDPDQLAELFATIENA 941 Query: 120 IGEA 123 I + Sbjct: 942 ISRS 945 Score = 80.2 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 50/90 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVED+ + L+E +G EA+EL + D +++D+ L ++SG Sbjct: 947 RKLLIVEDDPAESRGLVALLEGRDVAISVAGSGKEAIELLSREAFDCMVLDLGLSDMSGF 1006 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 ++ + I+ + E + +PVI + ++ +EE Sbjct: 1007 DLLEHIEHEDEKRRLPVIIHSGRSLSHEEE 1036 >gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CDC1551A] Length = 234 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + G+ +G A+ D +++D+ L I G E Sbjct: 5 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 65 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 121 >gi|310643897|ref|YP_003948655.1| two-component response regulator, potential cognate sensor kinase is yxdk [Paenibacillus polymyxa SC2] gi|309248847|gb|ADO58414.1| Two-component response regulator, potential cognate sensor kinase is YxdK [Paenibacillus polymyxa SC2] Length = 233 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED+ L + +E GY + N + L + ++ KPD++I+D+ L G Sbjct: 1 MHKILIVEDDPQISSLLQSYLEKYGYQGVVVSNFDQVLGVFQKVKPDLVILDVNLPRFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QI+ S P++ V+A K D+ + G + YI+KP + + ++ + Sbjct: 61 FYWCRQIRTQS---TCPILFVSARDDKMDQVIALQNGADDYITKPFHPEVLLAKVESNLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|307824965|ref|ZP_07655187.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] gi|307734012|gb|EFO04867.1| multi-sensor signal transduction histidine kinase [Methylobacter tundripaludum SV96] Length = 659 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 67/117 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D N+ + + +E+ GY + ++GME L+ A KPD+I++D+ + + G E Sbjct: 15 TILIVDDTPTNLGVVVESLESRGYRLVVAQDGMEGLQRAAFVKPDLILLDVMMPGMDGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K +++ EIPVI +TA A + K G YI+KP+ + + + ++ Sbjct: 75 VCRHLKANADTAEIPVIFMTALAETEHKITGFKVGGVDYITKPMQIDEVIARVGTHL 131 >gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 269 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A++ AR+ +PD +++D+ L ++ GL Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ EL ++PV+ +TA D G + Y++KP SL + ++ I A Sbjct: 104 VLGRLRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRA 161 >gi|258516163|ref|YP_003192385.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257779868|gb|ACV63762.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 920 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +K+++V+D+ N+ +E G L NG + + + ++ D+++MDI + E+ G Sbjct: 800 RKILLVDDDMRNVFALTVALEKYGAKVLFAENGKDGINVLNKNPGIDLVLMDIMMPEMDG 859 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ E + +PVIA+TA AMK D E+ G YI KP+++ + I+ ++ Sbjct: 860 YEAIQTIRRMPEYKTLPVIALTAKAMKNDREKCISVGASDYICKPVNVEQLLSLIQVWL 918 >gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 703 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDN +N KL ++ G L NG EA+E R+ K +I+MD Q+ E+ G Sbjct: 563 KRILLVEDNPVNQKLASIQLKKFGLPLLAVSNGREAVEAVRREKYSLILMDCQMPEMDGF 622 Query: 63 EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ Q +P++A+TA AM+GD E G + YISKPI + + ++I Sbjct: 623 EATREIRRIEAEQGGHVPIVAMTARAMRGDREECLACGMDDYISKPIRSADLRRILNRWI 682 >gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + R ++ GY ++G AL +++I+D+ L + GLE Sbjct: 2 RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ +PV+ +TA D G + Y+ KP ++ ++ + + Sbjct: 62 LLKRLRA--AGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 119 >gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1138 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDN +N +L L+ +G A NG EA+E D+++MD+Q+ + GL Sbjct: 879 ARVLVAEDNPVNQQLTLALLRRAGLNAEAVSNGEEAVEAVTARPYDLVLMDVQMPVMDGL 938 Query: 63 EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ S + IP+IA+TA AM+GD + G + Y+SKPI+ ++ I +++ Sbjct: 939 MATRRIRGLSGRVARIPIIALTANAMQGDATICLEAGMDDYLSKPINARKLLDAIARFV 997 Score = 76.7 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 13/126 (10%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 +++++V+D +N L ++ G + NG ALEL D I+D ++ Sbjct: 691 RRLLLVDDIPVNRDLLTRQLDGFGIVTDAAENGETALELLLAAARGGTPFDAAILDHRMP 750 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK---GGCEAYISKPISLSIFME 114 ++G E+ ++I+ EL + + A A R+ + ++ KPI S + Sbjct: 751 GLTGPEVARRIRAIPELAGMRL----ALASSQ-RLEGRQRDWAPVDTHLPKPIRFSTLCQ 805 Query: 115 TIKKYI 120 + + + Sbjct: 806 CLARLL 811 >gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family [cyanobacterium UCYN-A] Length = 233 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + +E +G I N EA +L PD+II D+ + EI G + Sbjct: 7 ILLVDDEPSVCDSIQAYLEYNGDLIVKIANNAKEAWKLLETTIPDIIISDVMMPEIDGYQ 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++ LQ IP+I +TA M D + GC+AY+ KP +K ++ Sbjct: 67 FLERIRHNNRLQTIPLIFLTARGMTADRIKGYNAGCDAYLPKPFDPEELEAIVKSFLER 125 >gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2] gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22] gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2] gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22] gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2] Length = 228 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 235 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I +D E ++L +E I +NG++A + + D+ I+DI + +I G Sbjct: 1 MAKILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIMMPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K+I+E + IPVI ++A + + + G + YI+KP + + +K + Sbjct: 61 YHLVKKIREKYK---IPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|182419626|ref|ZP_02950871.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237665786|ref|ZP_04525774.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376516|gb|EDT74093.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658733|gb|EEP56285.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 249 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++D ++L + GY + NG + + + + K D+I++DI + I G +I Sbjct: 23 VLIIDDEVEIVELMEVYLVNEGYKVFKAYNGNDGINIVDKEKIDLIVLDIMMPGIDGFQI 82 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++D IP+I ++A + D+ + G + Y+ KP + F+ +K I Sbjct: 83 CMKIRKD---YNIPIIMISAKSQDMDKIQGLSVGADDYMVKPFNPMEFIARVKSQIRR 137 >gi|27363525|ref|NP_759053.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6] gi|37679274|ref|NP_933883.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016] gi|27359641|gb|AAO08580.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6] gi|37198017|dbj|BAC93854.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016] Length = 242 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQLQEISG 61 ++++V+D+ +L + + +GY +G + L+ LA P+++++DI L G Sbjct: 6 RILVVDDDSEIRELLDEYLSRNGYQVATVADGHQ-LKHYLAENGYPELVLLDIMLPGEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ +S +P+I +TA + + D+ + G + YI+KP + + IK + Sbjct: 65 FSLCQFMRRES---TVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 223 Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED R + SG+ +G E L+LA + D+II+D+ L + G + Sbjct: 2 RILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLPGVDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+I+ ++ PV+ +TA D + + G + Y+ KP + S + I+ + Sbjct: 62 IIKRIR--GTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRR 118 >gi|329957618|ref|ZP_08298093.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328522495|gb|EGF49604.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 1492 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN R + + Y ++ NG+E L+ A + PD+II D+ + E G+ +T Sbjct: 1222 LLVEDNSELRIFLRSIFASE-YRIVEAANGVEGLDKALKFLPDIIISDVMMPEKDGIAMT 1280 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA + + + G + YI+KP S + +K + + Sbjct: 1281 RELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQ 1337 >gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 228 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++I +D ++ G++ +G +ALE R PDV+I+D+ + ++ Sbjct: 1 MDKRILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++ + + ++ +TA D+ + G + ++SKP L + IK + Sbjct: 61 GYEVCRRL---ESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALV 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+E +L R ++ GY+ + +G EA L + + ++DI + G Sbjct: 1 MIHILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ + P+I +TA D+E+ G + Y++KP + IK + Sbjct: 61 YEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] Length = 234 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + +E G+ A NG A E Q D+I++D+ L + G+E Sbjct: 12 RVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + +P+I +TA D G + YI+KP ++ + +K + Sbjct: 72 ICRRVRA---VTNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRR 127 >gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 230 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D + +E GY ++ +G EAL L H PDVI++D+ L ++ G Sbjct: 6 KTILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGLPDMDGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + + VI ++ + + D+ G Y++KP SL I+ + Sbjct: 66 ELLRTL---PVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRR 122 >gi|253568433|ref|ZP_04845844.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|251842506|gb|EES70586.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 231 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K V++VED + +D +E +G+ +G E L L + +PDV++ D+ + Sbjct: 1 MNKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G E+ ++I++ ++ PV+ +TA + D + G Y+ KP + + IK Sbjct: 61 KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIK 118 Query: 118 KYIGEA 123 +G+A Sbjct: 119 ALMGKA 124 >gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 774 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 71/115 (61%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED LN K+ +I + GY A NG EA+E + H D+++MD+Q+ E+ GLE Sbjct: 639 RILLAEDIALNQKVALYMITSFGYQADVANNGKEAVEALQSHAYDLVLMDVQMPEMDGLE 698 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+ +S + + ++A+TA A++GD E G YI KPI+ ++T+++ Sbjct: 699 ATRIIRANSNIVQPHIVAMTAHALQGDREECLSAGMNGYIRKPITKDELLKTLQQ 753 Score = 45.5 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-ELARQHKPDVIIMDIQLQEISG 61 K ++I+ N+ N+ E+ G Q + AL EL + + D++ + L + Sbjct: 491 KNLLIITSNQTNLAHLALQAESWGLNVSQAASPEAALVELRAKPRFDIVAIQKPLHGLGL 550 Query: 62 LEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +E+ +I+E Q +P+I + + K G A + KP+ S F + + + Sbjct: 551 MEMALRIRELPGYQIVPLIVMKSRKHTHTTPVDSLK-GNVAVLRKPVRRSQFYNALVRLL 609 >gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 787 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN N + + +ET NG ALE K D+I+MD+Q+ E+ G E Sbjct: 524 RILLVEDNYFNQIVAKKTLETFQVSCDVAENGRVALERLAAAKYDLILMDVQMPEMDGYE 583 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I++ L EIP+IA+TA A+KGD+E+ G YISKP E + + Sbjct: 584 ATRLIRKMPPPLNEIPIIAMTAGALKGDDEKCINAGMNDYISKPFDPERLYELLAAH 640 Score = 64.4 bits (157), Expect = 6e-09, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIAL--QTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV+ +ED+ ++ F LI+ + + A + + VII D L + + Sbjct: 6 KVLYIEDDRVDQIAFERLIKQQSHTYDYKVVNSVAAAKAMLVKEDFHVIITDYNLGDGTA 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++ +Q + PVI +T + K G Y+ K Sbjct: 66 SDVLEQ------FHKTPVIFITGTGDEEIAVNAMKSGAYDYLVK 103 >gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 227 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+ED ++ +E + +G L+LA ++ D++++D + ISG+E Sbjct: 2 RLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIPGISGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++++ ++P+I +TA D G YI KP + I+ + Sbjct: 62 VCRRLRKEGN--DVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRR 118 >gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1238 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL+ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVLAGNGQVALDTIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E E+P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWI 1229 Score = 97.5 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSTLMRDFHFEVDTAASGAEALYKLSRAPIDLLLLDWMMPEMDGSD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + L + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VVSAIDTMVAEGRLAKRPVIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] Length = 234 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + R ++ GY ++G AL +++I+D+ L + GLE Sbjct: 17 RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLE 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ +PV+ +TA D G + Y+ KP ++ ++ + + Sbjct: 77 LLKRLRA--AGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 134 >gi|219847767|ref|YP_002462200.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] gi|219542026|gb|ACL23764.1| response regulator receiver protein [Chloroflexus aggregans DSM 9485] Length = 390 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K ++IV+D++ ++ ++ +GY + +G EAL+ + PD +I D+ L I Sbjct: 1 MKPPTLLIVDDDDAVAEMIELMLRNAGYEVRRAASGEEALQQIFKSPPDALICDVLLPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K++++ + +P++ +TA + + G Y++KP + +K Sbjct: 61 DGYTLCKRVRQHPLTRMLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPPELVYRVKNL 120 Query: 120 IGE 122 + Sbjct: 121 LTR 123 >gi|186475955|ref|YP_001857425.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184192414|gb|ACC70379.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 248 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ +L + +G A G + +PD+I++D+ L SGL+ Sbjct: 6 HVLIVDDDRDIRELVGTYLTRNGVRATLASGGRQMRAALAAERPDLIVLDLMLPGESGLD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ E Q +P++ +TA + + D + G + Y++KP ++ + I+ + + Sbjct: 66 LCRELRA-GEFQTVPILMLTALSEETDRVVGLEMGADDYLAKPFAVRELLARIRAILRRS 124 >gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 232 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 11 RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 70 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 127 >gi|330809931|ref|YP_004354393.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378039|gb|AEA69389.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1160 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +KV++V+D+ N+ +E G I + RNG+EA++ + D+++MD+ + E+ G Sbjct: 1036 RKVLLVDDDVRNIFALTSALEAKGAIVVIGRNGLEAIDRLNEFDDIDLVLMDVMMPEMDG 1095 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T I++D +++P+IAVTA AMK D+ER G Y++KPI L I+ ++ Sbjct: 1096 FEATALIRKDPRWRKLPIIAVTAKAMKDDQERCLAAGSNDYLAKPIDLDRLFSLIRVWL 1154 Score = 99.0 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED ++ DL GY L E +LA Q PD I++D++L + SGL + Sbjct: 770 ILVIEDEPKFARILFDLAHELGYQCLVAHGADEGFDLALQLAPDAILLDMRLPDHSGLTV 829 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER-IRKGGCEAYISKPISLSIFMETIKKY 119 +++KE +E + IPV ++ D G Y KP + + + Sbjct: 830 LQRLKERAETRHIPVHVIS----VEDRVEAAMHMGAIGYAVKPTTREELKDVFARL 881 Score = 73.6 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 45/91 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED++L LI +AL+L R + D +I+D++L ++ G Sbjct: 890 KRVLLVEDDDLQRDSITRLIGDDDIEITAVGLAQQALDLLRSNVYDCMIIDLKLPDMLGN 949 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ K++ + PVI T + DEE Sbjct: 950 DLLKRMSSEDICSFPPVIVYTGRNLTRDEEA 980 >gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D+ ++ + GY Q NG E L++ + +I++D+ + ++ Sbjct: 1 MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++E S IPVI +TA + D+ + GC+ YI KP + + + Sbjct: 61 GYTMLCKLRESS---NIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAEGHA--VPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2] gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39] gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341] gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39] gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2] gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341] Length = 240 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] Length = 304 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 60/120 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ + + ++ +G L +G AL + + PD I+MD + + G E Sbjct: 8 TVLVVDDSPETLGFVTEALKKTGVAVLVATSGETALNICSKVTPDTILMDAVMPGLDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +QIKE+ LQ +PVI +T + + + G +++KPI + IK ++ A Sbjct: 68 TCRQIKENPALQHVPVIFMTGLSETEHVVKALESGGVDFLTKPIDVDELKARIKVHLKNA 127 >gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 232 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D+ G + +I KP S + + + Sbjct: 61 GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 228 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E + L+ G+ + +G L QH+ ++++D+ L +SG Sbjct: 1 MTSVLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K++++ S +P+I VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVCKKLRQSS---TVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 234 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + +E +G EALE + + D+II+D+ L I G Sbjct: 7 HILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFERFDLIILDVMLPGIDGFV 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++E +PV+ +TA + + D GG + Y++KP +L F+ +K + + Sbjct: 67 VCKKVRELD--ARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRRS 124 >gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 231 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D+ + L + ++ GY Q +G E L ++ +P ++I+DI + E+ Sbjct: 1 MTTSILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + +++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRKSGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 248 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|332141179|ref|YP_004426917.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonas macleodii str. 'Deep ecotype'] gi|327551201|gb|AEA97919.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonas macleodii str. 'Deep ecotype'] Length = 337 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D +N+++ + L+ + Y + RNG EAL+LA +P++I++D+ + ++G E Sbjct: 14 TLLLVDDEPVNLRVLKQLL-ANDYQLIFARNGEEALKLAPSRQPNLILLDVMMPGLTGFE 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q+K+ ++IPVI VTA + DE + G YI+KPIS +I +K ++ Sbjct: 73 VCRQLKQQENTKQIPVIFVTALNDEQDETQGFDAGAVDYITKPISPAIVKARVKTHL 129 >gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52] gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395] gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27] gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae] gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52] gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395] gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395] gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27] Length = 240 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|332880933|ref|ZP_08448603.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681107|gb|EGJ54034.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1366 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+DN + + + + L +G+EA+ + + DVII D+ + + GLE+ Sbjct: 1116 LLVDDNVDLLDVMCRVFSHR-HKVLLAHDGIEAVAVIENNAVDVIISDVMMPNMDGLELC 1174 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D IPVI +TA D K GC+ Y++KP L + ++ ++ Sbjct: 1175 RHLKADINTSHIPVILLTAKNAPEDRIECYKAGCDGYVAKPFELRVLEARVESFL 1229 >gi|288918260|ref|ZP_06412614.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] gi|288350297|gb|EFC84520.1| GAF sensor hybrid histidine kinase [Frankia sp. EUN1f] Length = 1065 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 +K+++V+D+ N+ ++E G L NG E +E L D+I+MD+ + E+ G Sbjct: 944 RKILVVDDDVRNVFAISSVLEVYGLTVLHASNGREGIEVLLGNTDVDLILMDVMMPEMDG 1003 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I+E ++P+IAVTA AM+ D E+ G +++KP+ + + I++ Sbjct: 1004 YATMSAIREMPRFADLPIIAVTAKAMQSDREKCLAAGATDFVAKPVDTEMLLARIEQ 1060 Score = 42.4 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 27/54 (50%) Query: 28 IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIA 81 +A+ +++D+ L + S ++++ED++L+++PV+A Sbjct: 815 QVATVTTPEDAVRALAAAPHRCVVLDLTLPDASAFAFLQRLQEDADLRDVPVLA 868 >gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++IV+D + + +ET G+ L GM + H D++I+DI L +I Sbjct: 1 MKELILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGLPDIG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + I++ +P+I +TA + D + G + YI+KP S +K + Sbjct: 61 GLELCRLIRQ---TSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 209 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 14 NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 +L ++ GY + NG EAL+ D +++DI + E+ GL + K+I++ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVCKEIRK--- 57 Query: 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 58 TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 106 >gi|298528195|ref|ZP_07015599.1| response regulator receiver sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511847|gb|EFI35749.1| response regulator receiver sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 366 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D+ ++L D+ E + L NG A +A +PD+++MD+ + + G Sbjct: 5 ARILVVDDDANIVQLIADIFEDE-HEVLFALNGESAGRIADTTRPDLVLMDVVMPGMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + KE+ + IP+I +T+ DE R K G YI+KPI+ ++ + ++ ++ Sbjct: 64 ETCARFKENQKTAHIPIIFLTSMDCPDDETRGLKLGAVDYITKPINPAVLKQRVRTHL 121 >gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] Length = 243 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 69 TRRIRQEGIA--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124 >gi|91216473|ref|ZP_01253439.1| two-component system, transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] gi|91185267|gb|EAS71644.1| two-component system, transcriptional regulatory protein [Psychroflexus torquis ATCC 700755] Length = 240 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + Y +NGME E ++ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNSYDVTHAKNGMEGFEKFKKGNYDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+ +E +IP+I +TA AMK D + K G + Y++KP + + IK + Sbjct: 66 TLAKEIRAKNE--DIPIIFLTAKAMKDDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123 >gi|83956294|ref|ZP_00964735.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] gi|83839515|gb|EAP78696.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1] Length = 239 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D++ +E +G + E +H D+I++D+ + GL Sbjct: 5 AHILVVDDHDEIRNSVSSYLERNGMRTSVAESAAEMDAQRARHSFDLIVLDVMMPGEDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+++++ PV+ +TA D +GG + Y+SKP + + I+ + Sbjct: 65 TACKRLRQE---CGTPVLMLTALGEDDDRIEGLEGGADDYLSKPFNPRELLARIRAIMRR 121 Query: 123 A 123 + Sbjct: 122 S 122 >gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 248 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-----DVIIMDIQLQ 57 K+V++VED EL ++ ++ GY L +G AL + + D++I+D+ L Sbjct: 19 KQVLVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLP 78 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +++GL++ + ++ IP++ ++A A + D + G + Y++KP S+ + + Sbjct: 79 QVNGLDLCRLLR--YRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCR 136 Query: 118 KYIGE 122 I Sbjct: 137 ALIRR 141 >gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 775 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN + + + + Y L+ NG EAL + ++ + +I+ D+ + + GL++ Sbjct: 531 ILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDGLQL 589 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 KQIK++ IPVI ++A ++ + G + YI KP S+ + IK Sbjct: 590 CKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFR 646 >gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 4/123 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEI 59 +KK+++ ED + +GY ++ G AL+ ++ DV I+D+ + I Sbjct: 1 MKKILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+++ + I +I ++A + D+ G + Y++KP S S + + Sbjct: 61 DGFQVCKELRNRNGG--IGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSL 118 Query: 120 IGE 122 Sbjct: 119 YRR 121 >gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 867 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +N ++E G+ T NG +ALE+ + D + MDIQ+ + G+E Sbjct: 748 ILVVEDDRVNQLAISRMLEKMGHFPTCTPNGEKALEMLKGSIFDCVFMDIQMPVMDGMEA 807 Query: 65 TKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ L IP+IA+TA AM D E K G Y++KP+S E + + I Sbjct: 808 TRMIRTAPSLAGVASIPIIALTAHAMPADREAFLKAGMNDYVAKPVSFEQLAEVLSRII 866 >gi|253582051|ref|ZP_04859275.1| response regulator [Fusobacterium varium ATCC 27725] gi|251836400|gb|EES64937.1| response regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 3/112 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVED + +K+ D + +I + +G ALE+ +H PD+I++DI L +++ Sbjct: 1 MTKKILIVEDEKNLIKVIEDTLVEEDFITFKALDGETALEMFYEHNPDLILLDINLPKMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 G E+ + I+ +S IP+I +TA + DE + G + YI+KP SL + Sbjct: 61 GWEVCQNIRRES---NIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVL 109 >gi|298491243|ref|YP_003721420.1| GAF sensor-containing adenylate/guanylate cyclase ['Nostoc azollae' 0708] gi|298233161|gb|ADI64297.1| adenylate/guanylate cyclase with GAF sensor(s) ['Nostoc azollae' 0708] Length = 1180 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN +++ SGY + RNG E +A+ +PD+II D+ + ++G+E+ Sbjct: 826 VLVVDDNPDMRSYVAEILAHSGYQIITARNGYEGYNIAQGVRPDLIITDLMMPLLTGIEM 885 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ +++ IP+I +TA + + G +AY+ KP + + ++ + Sbjct: 886 IQMIRSQDQVRGIPIILLTAKVDEETRIEGIEHGADAYLGKPFNDRELLAEVRNLL 941 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62 K+++V+D N+ L Y L+ +G ALE LA++ VII D ++ +SG Sbjct: 10 KILVVDDEPDNLDLLYRSFYRE-YQVLRANSGPAALELLAQEGDIAVIISDQRMPMMSGT 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKKYI 120 E ++ +I I +T + D G Y++KP +++ + Sbjct: 69 EFLSL--TATQYPDIIRIILTGYTDVEDLVEAINSGKVFKYVTKPWEAEELKAVVRQAL 125 >gi|156743542|ref|YP_001433671.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM 13941] gi|156234870|gb|ABU59653.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM 13941] Length = 619 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I +D+ + + L+ G+ L +NG EAL + ++ PD++++D+ + EI G E Sbjct: 6 TILIADDDPGARLVLQRLLTREGHRVLMAQNGAEALRQSIEYTPDLLLLDVLMPEIDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +Q++ + L+EIP++ +T+ + G +I+KP ++ + ++ Sbjct: 66 VCRQLRNHTRLREIPILLITSLGDQQSRVEGLSAGANGFITKPFDMAELLAHVRTITR 123 >gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Marinomonas sp. MED121] gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine Kinase (STHK) with GAF sensor [Marinomonas sp. MED121] Length = 2241 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 69/118 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE+N + +L+ +G NG +A+ L + +I+MDIQ+ + GL Sbjct: 1892 ILLVEDNEINRHVALELLSETGIKVDIALNGQDAVNLVSVNDYHLILMDIQMPIMDGLTA 1951 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK+I++ +E+P+IA+TA AM ++E+ G +++KPI + + +++ + Sbjct: 1952 TKRIRQLKSKEELPIIAMTAHAMPSEKEKSLIAGMNDHLTKPIEPNYLFNALNQWLPK 2009 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 64/123 (52%), Gaps = 6/123 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59 +++V+DN ++ ++ ++ Q +G +A+E + D++IMD ++ + Sbjct: 1743 ILVVDDNPISQQVISRMLGHLNISCTQANDGSKAVECVQDAASKNTHFDMVIMDWKMPNM 1802 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G+E ++ IK++ EL P ++ ++A+ + + Y+ KP+S S +ETI + Sbjct: 1803 DGIEASRIIKQELELDTPPHILMLSAYDRDEVKLLGSPITIDHYLEKPVSQSTLVETIGE 1862 Query: 119 YIG 121 +G Sbjct: 1863 VLG 1865 >gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1099 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N ++ L+ G+ +G EALE R DV++MD+Q+ E+ GLE Sbjct: 852 RILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGLE 911 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ S IP++A+TA AM+GD++ G + YISKPI E + KY Sbjct: 912 ATRAIRSLASAAARIPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 968 Score = 80.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58 +V++V+DN +N + + G + + A +V ++D Q+ Sbjct: 705 RVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVIDSQMPV 764 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G E+ + ++ L +I ++ M +++ + +A++ KP+ S ++TI + Sbjct: 765 VTGSEMVRMMRAIPMLGGSRIIVTSSQGMPAEQQDGQPA-IDAFLHKPLRQSTLLDTIGR 823 Query: 119 YIG 121 +G Sbjct: 824 VLG 826 >gi|332665274|ref|YP_004448062.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334088|gb|AEE51189.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 239 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ + R +E Y ++G+E LE ++ D+ I D+ + + G Sbjct: 5 RILLVEDDQNFGDVLRSYLEMHDYDVTLAKDGVEGLESYKKGHYDLCIFDVMMPKKDGFT 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+E +E+P++ +TA MK D + G + YISKP + + I + + Sbjct: 65 LAREIREKD--REMPIVFLTAKTMKDDVLEGFRIGADDYISKPFNSEELLFRIHAILKRS 122 >gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 255 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G +G A+ AR+ +PDV+++D+ L ++ GL Sbjct: 28 RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPDMDGLA 87 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E+ ++PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 88 VLGRLRR--EIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS 145 >gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803] gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803] Length = 242 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ ++ + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01] gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 239 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + +E Y + +G +AL+L Q KP +I++D L G+ Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S ++P+I +TA D G + Y++KP + + I+ + Sbjct: 67 VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122 >gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 228 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E K ++ GY +G L+ A D+I++D+ L E++G Sbjct: 1 MSRILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E L+ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVARRVRE---LKNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum ATCC 6940] gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum ATCC 6940] Length = 231 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 61/111 (54%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E G+ + +G EA+ +++ PD+I++D+ L ++ Sbjct: 1 MAPKILVVDDDPAISEMLTIVLEAEGFEPIAVTDGNEAVPAFQENDPDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G++I + I+ +S +P++ +TA D + G + YI+KP Sbjct: 61 GVDICRAIRTES---SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKE 108 >gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 234 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 62/128 (48%), Gaps = 10/128 (7%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-------HKPDVIIMDI 54 + ++++VED E + + GY ++ +G A+EL + D++++D+ Sbjct: 1 MTRILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDL 60 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 L +SG E+ ++I+ S +PVI +TA + D+ + G + Y++KP S + Sbjct: 61 MLPRLSGTEVCRRIRRSS---NVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVA 117 Query: 115 TIKKYIGE 122 + + Sbjct: 118 RVHAVLRR 125 >gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] Length = 251 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + IVED+ ++ R ++ SGY + G + + P +I++DI L G Sbjct: 29 MATIYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLESKVPALILLDIMLPNEDG 88 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+I +I+ D ++P+I VTA + D+ + G + YISKP + + +K + Sbjct: 89 LDILTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALLR 148 Query: 122 E 122 Sbjct: 149 R 149 >gi|189465203|ref|ZP_03013988.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM 17393] gi|189437477|gb|EDV06462.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM 17393] Length = 1293 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I++DN+ + + +D++ Y L NG E LEL +Q P++II DI + +I G+ Sbjct: 1036 TILIIDDNKELLWMLKDILSNE-YAILTAENGEEGLELLKQETPNLIITDIMMPKIDGIT 1094 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +TKQ+K + IP++ ++A ++ + G +AYI KP + IK+ I Sbjct: 1095 LTKQLKNNKHTAHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRTIIKQLI 1151 >gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 258 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ L + +G +G E + H+ D+IIMD+ L + GL + Sbjct: 17 ILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLSL 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ S+ +P+I +TA D + G + Y++KP + + I + Sbjct: 77 CRKVRARSQ---VPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR 131 >gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D + Y + +G EALE+ + + +++MD+ + + G Sbjct: 1 MYNVLVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEEIHLVLMDVMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T +I+E+S +P+I ++A + D+ G + YI+KP + + + + Sbjct: 61 TSATIKIRENS---TVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 226 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I++D+E L +E G+ AL+ N + L L + + D+II+DI + +++ Sbjct: 1 MKDRILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G++ +I+E+ + +P+I ++A + D+ G + Y++KP + + +K I Sbjct: 61 GIDAAFKIREE---KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|167764902|ref|ZP_02437023.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183] gi|167697571|gb|EDS14150.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183] Length = 1501 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN R + + Y ++ NGME L A + PD+II D+ + E G+ +T Sbjct: 1233 LLVEDNSELRIFLRSIFASE-YRIVEAANGMEGLNKALKFLPDIIISDVMMPEKDGIAMT 1291 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D IP++ +TA + + + G + YI+KP S + +K + + Sbjct: 1292 RELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQ 1348 >gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 236 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ L ++ +GY+ G E D+II+DI L +G+E Sbjct: 5 TILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEPIDLIILDIMLPGTNGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+++ S ++P+I ++A + D + G + Y++KP M ++ + Sbjct: 65 LCRQLRQKS---DVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRR 120 >gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] Length = 229 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ +D + L +E G+ L +G+ A++ R PD+ ++D + ++GL+ Sbjct: 7 TVLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMPGMTGLD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I +++++ +PVI +TA D + G + +I+KP ++ + K + + Sbjct: 67 ICRRLRDTGVF--LPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRS 124 >gi|159900821|ref|YP_001547068.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] gi|159893860|gb|ABX06940.1| response regulator receiver modulated diguanylate cyclase [Herpetosiphon aurantiacus ATCC 23779] Length = 552 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 3 KKV---MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 K + +++ED++ ++ + +GY T +G E L LA + D+I++D+ L +I Sbjct: 236 KTIAELLVIEDDQEIQQVVSQGLSNAGYSITVTTSGEEGLRLAMRQPFDLIMLDLMLPDI 295 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +Q++E ++ P++ V+A ++ R + G + YI+KP + + I Sbjct: 296 DGWTVLRQLRERTQTATTPLMLVSALGKPEEKVRGFQLGADDYITKPFDWNELLARISAS 355 Query: 120 IGE 122 + Sbjct: 356 LRR 358 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED++ + + SGY + +GM L+LAR ++P II+D+ L ++G ++ Sbjct: 116 VLLIEDSQTYRAVVSARLTQSGYNVVTAPDGMAGLDLARAYQPVAIILDLMLPHLNGEQV 175 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDE 91 + ED E + IP+I T K E Sbjct: 176 AFVLGEDPETKHIPIIIYTGLEAKQTE 202 >gi|160879822|ref|YP_001558790.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428488|gb|ABX42051.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D++ + + ++E YI NG+EAL++ D++++DI + ++ G Sbjct: 1 MIHILVVDDDKNTRRFMKAVLEEEQYIVFTASNGVEALDILDTTHIDLVVLDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ ++ S E+P++ V+A + D ++ + G + +++KP+ + IK + Sbjct: 61 YEFTEILR--SVQNELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|71906648|ref|YP_284235.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71846269|gb|AAZ45765.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 655 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED+ LN ++ +++ G A NG +A+E + D+I+MD+Q+ + GL Sbjct: 536 KRVLLVEDDALNREIALSMLDDVGLAADIACNGRQAVEAIGNQRYDLILMDMQMPVMDGL 595 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + +P+IA+TA A D +R R G +++KP+ + + + + Sbjct: 596 AATREIRAMPQFDSVPIIAMTANAFDDDRQRCRDAGMNDFVAKPVEPYLLFAALLRCL 653 >gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] Length = 1201 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++ EDNELN ++ +L+ G + NG A+E R+ + D+++MD+Q+ E+ GL Sbjct: 944 RRVLLAEDNELNQQVAVELLSELGLVVDVVDNGRTAVERVRERRYDLVLMDMQMPEMDGL 1003 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ I+ +P++A+TA AM D +R G + +I+KPI ++ + Sbjct: 1004 SATRAIRALPGAARLPIVAMTANAMVDDVQRCLSAGMDGHIAKPIDPRRLASQLQGCLER 1063 >gi|311898710|dbj|BAJ31118.1| putative two-component hybrid sensor and regulator [Kitasatospora setae KM-6054] Length = 1549 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V+IV+D+ N+ ++E G L NG E +E+ QH+ +++MDI + E+ G Sbjct: 1429 RVLIVDDDIRNVFALTSVLEQYGLTVLYAENGREGIEMLEQHEEVALVLMDIMMPELDGY 1488 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI+ +P+IA+TA AMKGD E+ + G +I+KP+ + +++++ Sbjct: 1489 ATTEQIRRMPRFSGLPIIALTAKAMKGDREKSLQAGATDHITKPVETDHLLAVMRQHL 1546 >gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 233 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L +E +GY G E AR + PD++I+D+ L + G Sbjct: 1 MPNILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + +++DS +P++ +TA D+ + G + Y++KP + + ++ + Sbjct: 61 LQVCRLLRDDSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c] Length = 1388 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G +G + +E + D+++MD+ + E+ G Sbjct: 1258 RSVLVVDDDVRNVFAITSILEFYGASVDHAPDGRKGIEKLLANPSTDLVLMDVMMPEMDG 1317 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I+ + ++P+IAVTA AM D ++ G Y++KP+ + + ++ + Sbjct: 1318 YTTMAAIRAMTRFTDLPIIAVTAKAMPDDRQKCLDAGANEYVTKPVDVDELLARVQDVL 1376 >gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 222 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED E ++ G+ G AL + D++++D+ L E+SG E+ +Q Sbjct: 2 VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGADIVLLDLMLPEMSGTEVCRQ 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ S +P+I VTA + D+ + G + Y++KP S + I+ + Sbjct: 62 LRQRS---HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRR 113 >gi|294805989|ref|ZP_06764856.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294446871|gb|EFG15471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 945 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 700 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 758 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 759 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 814 >gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586] gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586] Length = 240 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 242 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 1 ML----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M+ KK+++V+D+ +L + + G+ + E + D++++D+ L Sbjct: 1 MMADQNKKILVVDDDVRLRELLQRYLTEQGFTVKTANDAKEMDSILGSDTIDLLVLDLML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 GL I ++++ ++ + +P++ +TA + D + G + Y+ KP + + I Sbjct: 61 PGEDGLSICRRMRGNATM--MPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARI 118 Query: 117 KKYIGE 122 + Sbjct: 119 NAVLRR 124 >gi|188992549|ref|YP_001904559.1| Two-component system sensor/response regulator fusionprotein, probable [Xanthomonas campestris pv. campestris str. B100] gi|167734309|emb|CAP52519.1| Two-component system sensor/response regulator fusionprotein, probable [Xanthomonas campestris pv. campestris] Length = 1046 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ D+++MDI + E+ G+ Sbjct: 926 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLAKHEVDLVLMDIMMPEMDGI 985 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D E + G YI+KPI + + + + Sbjct: 986 TAMRQIRANRQWQDLPIIALTAKAMADDREHCLQAGANDYIAKPIDVDKLVSLCRVWCSR 1045 Score = 100 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED + DL + + N EAL LA + +P I++DI L + SGL + Sbjct: 660 ILAVEDETRFAQALVDLAHELDFDCVVAPNAEEALRLAAELRPSGILLDIGLPDASGLSV 719 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K + + IPV V+A + + G Y+ KP + + I++ Sbjct: 720 LERLKRNPATRHIPVHVVSALERS---QIALELGAVGYLIKPATRELLAGAIRQL 771 Score = 70.2 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ L+ + EA++ D ++ D+ L + SG Sbjct: 780 RRLLIVEDDSALRANLELLLARDQLEIVAVGTIAEAMDQLGSATFDCMVTDLALPDGSGY 839 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 840 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 899 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 900 SVEASLPSDQQRLLREA 916 >gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] Length = 219 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED + L + + +GY Q +G L+ A + + ++I++D+ L I+G+E+ Sbjct: 5 ILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRINGIEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E +++ PVI +TA D+ + G + Y++KP ++ + I + Sbjct: 65 CRRLRE---IKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 119 >gi|148656813|ref|YP_001277018.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1] gi|148568923|gb|ABQ91068.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1] Length = 969 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ ++ + L+ +GY G EAL PD++++D+ L +SG Sbjct: 5 AHILVVDDDASVRRMLQILLSNAGYRVSLATTGEEALAYLELVTPDLVLLDVALPGVSGR 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++IK D + IPVI VT + + G + ++ KP+ L+ + ++ + Sbjct: 65 QVMERIKSDPDRPFIPVILVTGHSDPEAKVAALDAGADDFLVKPVDLAELLARVRAMLR 123 >gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24] gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans TK24] gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G A++ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ SE +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLR--SEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|332876950|ref|ZP_08444703.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685058|gb|EGJ57902.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 856 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDN + ++ Y ++ NG E E+A+++ PDV++ D+ + ++ G ++ Sbjct: 609 ILIVEDNPDMRRFIHYILSDD-YNIIEAENGEEGFEVAKKYLPDVVVSDVLMPKVDGFDL 667 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + IPVI +TA+AM ++ + G +AYI+KP ++ + ++K I Sbjct: 668 CQLLKTNVSTNHIPVILLTAYAMDEQKQVGFESGADAYIAKPFNIRLLRTRVRKLI 723 >gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 232 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D+ G + +I+KP S + + + Sbjct: 61 GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|237714241|ref|ZP_04544722.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229445733|gb|EEO51524.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1523 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1237 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1295 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S ++ + Sbjct: 1296 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLL 1350 >gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMPGMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIR--DERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|56965315|ref|YP_177047.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911559|dbj|BAD66086.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 224 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++IV+D + +L++ GY +GM A++L ++ D+II+DI + ++G Sbjct: 1 MEHILIVDDEIQITSIVGELLQEEGYQTTVANDGMNAIKLIKEQDFDLIILDIMMPYVNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + ++E ++P++ VTA D+ G + YI+KP + + IK ++ Sbjct: 61 LDVCRSVRE---FTDVPILFVTARTSMNDQINGLNIGGDDYINKPFTHEQLLARIKTHLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 258 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+I++D++ L + + A G E + + + ++I+DI + + Sbjct: 28 MKHKVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMD 87 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+E +PV+ +TA + + + G + Y++KP + F+ + I Sbjct: 88 GFQVLEKIRE---TNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLI 144 Query: 121 GE 122 Sbjct: 145 RR 146 >gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D +L + +E GY + NG EA EL + D+ I+DI + + Sbjct: 1 MDMTILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRTIDLAILDINMPLMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+ PVI ++A D+ G + +I+KP + + ++ + Sbjct: 61 GFALLKHIRTIHTF---PVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium resistens DSM 45100] Length = 224 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ +++ G+ + +G EA+ AR H PD+I++D+ L ++ Sbjct: 1 MAPKILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G+++ + I+EDS +P++ +TA D + G + Y+ KP Sbjct: 61 GVDVCRAIREDS---TVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKE 108 >gi|298242873|ref|ZP_06966680.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555927|gb|EFH89791.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + L R +E Y + +G +AL+LARQ +P +II+D L I Sbjct: 1 MQHTILVVDDDRKIVDLIRIYLEKERYQVIIASDGPQALKLARQKQPSLIILDWMLPSID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 GL++ + ++ + +IP+I +TA + + D+ G + Y++KP S Sbjct: 61 GLDVCRILRAE---CDIPIIMLTARSTEDDKLLGLNLGADDYLTKPFSPRE 108 >gi|325105279|ref|YP_004274933.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324974127|gb|ADY53111.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1363 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNE +D + S Y ++ +G E + A PD++I D+ + +SG+++ Sbjct: 1109 VLLVEDNEDFRSYLKDNLTKS-YRVIEACDGKEGWQKALSSHPDIVITDVSMPYLSGMDL 1167 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 K+I+ D + IPV+ +TA + DE + G Y+SKP + I I+ Sbjct: 1168 CKKIRADKRTKHIPVLLLTALTGEEDELSGLETGANDYMSKPFNFDILNIKIR 1220 >gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 240 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ + + + ++++D+ L GL Sbjct: 7 KVLVVDDDMRLRNLLERYLVEQGFQVRSAADSEQMDRHLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ EIP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQKGN--EIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVLRR 123 >gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] Length = 222 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L+R ++E +G+ + NG +AL+ ++II D+ + E+ G Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ + ++PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 225 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + +E +GY+ R+G+E LA + +I++D+ L I G Sbjct: 2 RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVMLPGIDGFA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ +PV+ +TA D + G + Y+ KP S S + I+ + Sbjct: 62 VLQAIR---RTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRR 117 >gi|218130333|ref|ZP_03459137.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697] gi|217987512|gb|EEC53841.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697] Length = 1331 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+ +GY NG EAL + R+ PD++I DI + E++G Sbjct: 1079 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMTGD 1137 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK + E+ IPV+ +TA + + K G +AYI KP S+ I T+K + Sbjct: 1138 ELCSIIKGNLEVSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILAN 1197 Query: 122 EA 123 A Sbjct: 1198 RA 1199 >gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] Length = 238 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ + +++ GY Q +G+E L++ + + D+ I+D+ + + G+ Sbjct: 7 RILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLEEREIDLAIVDVMMPRMDGIT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T +++E + PVI ++A + + D+ G + YI+KP + M + + Sbjct: 67 MTAKLREKYDF---PVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRR 122 >gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36] gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36] Length = 230 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED +L D + S + +G LEL D+I++D+ L G Sbjct: 1 MSKVLIVEDEVKIAQLLTDYLVQSNLETVMVHDGNAVLELVHNQYFDIILLDLMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K+I++ +P+I VTA + D + G + YI KP S + +K + Sbjct: 61 ITLCKEIRQ---FSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 229 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 K+++V+D++ +L I GY + +G EAL R + ++I+DI + ++G+ Sbjct: 2 KILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMNGI 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K++++DS+ IP+I ++A D+ + G + Y++KP + M +K + Sbjct: 62 EVVKEVRKDSQ---IPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 >gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 227 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN + G+ A +G+E + + D+II+DI L + G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E +P+I +TA + D+ + G + Y++KP S + IK I Sbjct: 62 ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117 >gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella buccae D17] Length = 884 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++++DN L+ + Y Q +G E L A + PD+II D+ + + GLE Sbjct: 642 LVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRDVPDLIICDVMMPVMDGLEFC 700 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D IPV+ +TA ++ G +AY++KP S + ++ + Sbjct: 701 RRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSGEVLKSRVRNLL 755 >gi|282895905|ref|ZP_06303945.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281199150|gb|EFA74019.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 369 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D N+ L R L+E+ GY +G AL+ Q PD+I++D+ + E+ G Sbjct: 10 ARILVVDDIRDNLILVRTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T+ I+ + + +P++ +TAF + G + +I KP + + ++ + Sbjct: 70 EVTRTIRSYTNIGYVPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLR 127 >gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 240 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VED+ L R ++ GY NG AL + D +I+D+ L + GL Sbjct: 5 RKILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++I++ +PVI ++A + + G + Y+ KP S+ + +K Sbjct: 65 EICRRIRQM--THYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRR 122 >gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELAKEIRKTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D++ + + GY L +G++AL++AR+ +IIMD+ + + Sbjct: 1 MSKLNILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREEDIHLIIMDLMMPNL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G T +++ + +EIP+I ++A + D+ G + Y++KP + + + Sbjct: 61 DGTRATIELRRE---KEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQ 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMD+ + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 AMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 >gi|104781516|ref|YP_608014.1| two-component response regulator [Pseudomonas entomophila L48] gi|95110503|emb|CAK15211.1| putative two-component response regulator [Pseudomonas entomophila L48] Length = 246 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L + ++ +G +G + + D+I++DI + GL Sbjct: 6 HILVVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLENNTVDLIVLDIMMPGDDGLL 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA + D + G + Y++KP S + I + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123 >gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris MG1363] gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris NZ9000] Length = 230 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK++I+ED + + +E GY NG +E A D+I++D+ L E+ G Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPELDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++++ ++ P+I +TA D G + YI+KP ++ + ++ + Sbjct: 63 FEVARRLRKE---KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80] gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587] gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3] gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457] gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33] gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2] gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX 330286] gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33] gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9] gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae 12129(1)] gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236] gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51] gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226] gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10] gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS 101] gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE 91/1] gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT 5369-93] gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80] gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587] gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3] gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51] gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457] gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33] gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226] gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2] gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae 12129(1)] gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9] gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33] gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX 330286] gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae MJ-1236] gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10] gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS 101] gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE 91/1] gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT 5369-93] gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae LMA3894-4] Length = 240 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] Length = 221 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + D + SGY +G E ++ RQ+ PD+I++D+ L GL+I Sbjct: 2 ILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWVRQYNPDLILLDLMLPNRDGLDI 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +IP+I TA + D + G + Y+ KP S + +K + Sbjct: 62 YRELRS---FSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRR 116 >gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 239 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED I G+ A +G A++ A+Q +PD++IMDI L + GL Sbjct: 12 RTILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGL 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I D + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 72 EATKRIVAD---RPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 128 >gi|307822388|ref|ZP_07652620.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] gi|307736954|gb|EFO07799.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylobacter tundripaludum SV96] Length = 352 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L L++ GY NG AL+ KPD+I++DI++ E+SG E+ Sbjct: 13 ILIVDDTLANLQLLSTLLKEEGYKVRPANNGAMALQAVATKKPDLILLDIKMPEMSGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K++ E + IPV+ ++A D+ + G YI+KP + ++ Sbjct: 73 CTALKDNPETKNIPVLFISALNDVTDKIQAFNVGALDYINKPFQFEEVKARVATHL 128 >gi|303236668|ref|ZP_07323249.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN] gi|302483172|gb|EFL46186.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN] Length = 232 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D ++ + +ET GYI + EALE + ++I++D+ + +ISG Sbjct: 7 HILIVDDEVDICEILKFNLETEGYIVDTANSAEEALE-LQLTDYNLILLDVMMGQISGFS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++KE+ E + IP+I +TA + D G + YISKP SL M I+ + Sbjct: 66 MAKRMKENVETKHIPIIFLTAKDTENDTITGFNLGADDYISKPFSLREVMLRIRAVLNR 124 >gi|284036649|ref|YP_003386579.1| histidine kinase [Spirosoma linguale DSM 74] gi|283815942|gb|ADB37780.1| histidine kinase [Spirosoma linguale DSM 74] Length = 1343 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ ED++ + T + L+ NG LE A + PD+II D+ + E++G Sbjct: 1088 MPYILLAEDDDDIASFILTTLSTE-WRVLRVNNGKAGLEAAIMNGPDLIISDVLMPELNG 1146 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+K + IP++ +TA G + Y++KP ++ I+ + Sbjct: 1147 YELCRQLKSNPITSHIPILLLTAKVSAESRLEGLNAGADDYLAKPFQVNELRARIRNRLA 1206 Query: 122 E 122 + Sbjct: 1207 Q 1207 >gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 226 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + K++IVED+E ++ +GY +G+EAL+ + P +I++DI L Sbjct: 1 MSQHKILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSE 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G+ + +++ ++PVI ++A + D+ + G + YI+KP L+ M + Sbjct: 61 NGIGVLGTLRQSGN--QVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAV 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|195977456|ref|YP_002122700.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974161|gb|ACG61687.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + ++ +GY +G +ALEL + + D+II D+ + + Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIISDVMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ E + P + +TA + D+ G + +ISKP S + +K + Sbjct: 61 GYDFIGEV--LLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118 Query: 121 GE 122 Sbjct: 119 NR 120 >gi|170749964|ref|YP_001756224.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] gi|170656486|gb|ACB25541.1| response regulator receiver protein [Methylobacterium radiotolerans JCM 2831] Length = 126 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+E ++ GY + +G + AR +PDVI++D+ L + G Sbjct: 1 MAKILLVEDHEEIWDFLSRRLKRRGYEVILAHDGEAGVRQARSGQPDVILLDMNLPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K ++ + IP+IA+TA AM GD ++ + GC+ Y KP+ S + I +G Sbjct: 61 WSVARTLKSGTDTRAIPIIALTAHAMSGDRDKAIQAGCDDYHPKPVDFSKLLSQISAALG 120 Query: 122 E 122 E Sbjct: 121 E 121 >gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991] gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991] Length = 250 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++D + L + GY + + +A+ + D+ ++DI + +I+ Sbjct: 22 MQTKILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIMMPKIN 81 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI K I+E PVI +TA D+ + G + YI+KP + + +K + Sbjct: 82 GFEICKMIREKYTF---PVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQL 138 Query: 121 GE 122 Sbjct: 139 RR 140 >gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] Length = 240 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%) Query: 1 ML---KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M+ +++V+D + + +G+ + EA + D++I+DI + Sbjct: 1 MMSDRPHLLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNANAIDLVILDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GL + + I+E EIPVI +TA + + D + G + Y+ KP S + IK Sbjct: 61 GEDGLSLCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIK 117 Query: 118 KYIGE 122 Sbjct: 118 VIFRR 122 >gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED++ +L + + T Y +G+E + + D+I++D+ + ++G E Sbjct: 5 HILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+ S +PVI +TA + D+ + G + YI+KP S + + ++ + + Sbjct: 65 VAKMIRSQS---NVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 121 >gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1090 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ ++E GY A +G E L DV++MD+Q+ E+ GLE Sbjct: 969 RILLAEDNLVNQKVAIRMLERLGYTADIAADGQEVLAALESRPYDVVLMDVQMPEMDGLE 1028 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T+ I+ + +IA+TA AMKGD E G YI+KP+ + + Sbjct: 1029 ATRSIRST-ACHQPYIIAMTAHAMKGDREVCLDAGMNDYIAKPVRIEELKAAL 1080 >gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21] Length = 818 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 75/121 (61%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N ++ R ++E+ G NG+ AL+ ++ K D+I MD Q+ + GL Sbjct: 563 RQVLLVEDNVVNQEVGRGMLESLGCRVKVAENGLAALKEVQRRKYDLIFMDCQMPVLDGL 622 Query: 63 EITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ E +P+IA+TA+AMKGD E G + Y+SKP S ++I++ + Sbjct: 623 GATRRIRQREEGSSSRVPIIALTAYAMKGDREACLAAGADDYLSKPFSREQLSKSIERRL 682 Query: 121 G 121 G Sbjct: 683 G 683 Score = 49.7 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 30/81 (37%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+ ++ D+ + +L G + AL D+++MD + G Sbjct: 426 SKRALLASDDPELQETLLELTGGLGMDLDCVGDAPGALCRLLAAPFDLVLMDHCVAGTDG 485 Query: 62 LEITKQIKEDSELQEIPVIAV 82 L + I+ + + ++ + Sbjct: 486 LALAATIRSIAVGHCVRLVLL 506 >gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 227 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED + R + +G++A +NG + L LA Q + D++I+D+ L + G + Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ ++PV+ +TA D + + G + Y+ KP S + + ++ + Sbjct: 62 VLQSLRNRGL--QMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118 >gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1237 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D+ N+ L++ G ++G+EA+ ++ D+I+MD+ + + G Sbjct: 1108 RRILLVDDDVRNVYALTALLDEVGLHVSSAKDGIEAIAAYQRDTFDLILMDMAMPNMDGY 1167 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ +K+ IP+IA+TA AMKGD E+ G + Y++KPI + +++++ Sbjct: 1168 TATRLLKQ-EHGCSIPIIALTAHAMKGDREKCITAGADDYMAKPIKRDELIALLERWL 1224 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 12/114 (10%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ + + G+ ++ R G++AL L +Q + +I+DI L ++SG ++ Sbjct: 854 LIVEDDANFAAVIAEEAHAHGFSSVHCRTGLQALGLLQQESFNAVILDILLPDLSGWQLF 913 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA----YISKPISLSIFMET 115 ++++ + PV ++ G Y+ KPI + Sbjct: 914 RRLRAQPSHRYTPVHIISCVPQP--------VGWNDDGTRYLVKPIGRDELEQV 959 Score = 56.7 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED + + +R+ + G++ N EA + +++D+ L + G + Sbjct: 974 LLVEDVAVEREHYREHLAQLGFVVTACANAEEARAAYANGEFAALVIDLDLPDQDGFALL 1033 Query: 66 KQIKEDSELQEIPVIAVTAFA 86 + + LQ + V+ T Sbjct: 1034 DSLNQLRPLQGMRVVINTGVD 1054 >gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator [Acidovorax sp. JS42] gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 227 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED + R + +G++A +NG + L LA Q + D++I+D+ L + G + Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ ++PV+ +TA D + + G + Y+ KP S + + ++ + Sbjct: 62 VLQSLRNRGL--QMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118 >gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 227 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED + + SG+I NG+ L +A D+II+D+ L +I+G E Sbjct: 2 KLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K ++ + P++ +TA + + G + Y+ KP S + ++ + Sbjct: 62 IAKSLRNSG--KNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRR 118 >gi|146342541|ref|YP_001207589.1| OmpR family two component response transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195347|emb|CAL79372.1| putative two component response transcriptional regulator (OmpR family) [Bradyrhizobium sp. ORS278] Length = 246 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED+ L + + +G E + H+ D++I+D+ L GL Sbjct: 7 HILVVEDDRETRTLIAKYLRNNACNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S+ +P+I +TA D + G + Y+ KP + + I + Sbjct: 67 LCRKLRAESQ---VPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRR 122 >gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 230 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++++D ++ R + GY +G EAL +A HKPDV+++D+ L +++G+E Sbjct: 7 RVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMAADHKPDVVVLDLGLPDMTGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ PVI ++A + D+ G + Y++KP + F+ ++ + Sbjct: 67 VLAGLR---GWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRR 122 >gi|148543300|ref|YP_001270670.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152710|ref|YP_001841051.1| two-component system response regulator [Lactobacillus reuteri JCM 1112] gi|227364368|ref|ZP_03848461.1| two component response regulator [Lactobacillus reuteri MM2-3] gi|325683567|ref|ZP_08163083.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|148530334|gb|ABQ82333.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224054|dbj|BAG24571.1| two-component system response regulator [Lactobacillus reuteri JCM 1112] gi|227070681|gb|EEI09011.1| two component response regulator [Lactobacillus reuteri MM2-3] gi|324977917|gb|EGC14868.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 221 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + + + SGY NG EA+E A+++ DVII+DI + SGLE Sbjct: 2 RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ ++ +TA + D+ G + Y+SKP SL + ++ Sbjct: 62 ALKEIRATGN--RTYIMMLTAMGEEDDKVTGLDAGADDYLSKPFSLKELLARLRSRQRR 118 >gi|323703413|ref|ZP_08115061.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] gi|323531594|gb|EGB21485.1| two component, sigma54 specific, transcriptional regulator, Fis family [Desulfotomaculum nigrificans DSM 574] Length = 454 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++++D E + GY L G + LEL R P ++I+D+++ E+ Sbjct: 1 MTRKILVIDDEEHMCWALEKGLRQEGYQVLTATRGKQGLELIRNEVPSLVILDLKMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++ + ++PVI +TA K G YI+KP L +K+ + Sbjct: 61 GLEVL--VRAKEMMPKLPVIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKLVVKQAL 118 >gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L I G Sbjct: 4 MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ ++I +I +TA D+ + G + YI+KP S I+ + Sbjct: 64 FQVCKSIREEN--KKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|254429063|ref|ZP_05042770.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195232|gb|EDX90191.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 713 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++M+VEDNE+N + R ++ G+ NG AL L Q D+++MD + E+ G E Sbjct: 583 RLMLVEDNEVNQLVTRGMLSKLGFQVKTVSNGETALALLEQEPFDLVLMDCMMPEMDGFE 642 Query: 64 ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T++++E + + PV+AVTA +G + R G + +++KP+ L +++++ Sbjct: 643 VTRRLREIEQDKASLRTPVVAVTANTAEGVQARCLAAGMDDFLAKPVHLDALETVLRRWL 702 Query: 121 GE 122 E Sbjct: 703 PE 704 >gi|168699248|ref|ZP_02731525.1| response regulator receiver domain protein (CheY-like) [Gemmata obscuriglobus UQM 2246] Length = 406 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDN+ N + + + G+ ++ NG EAL+ R+ D+++ DI + E+ G Sbjct: 161 KRILVVEDNDANRVMLCRRLGSRGFQTVEAANGREALDAVRRAPFDLVLCDIMMPEVDGY 220 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K D LQ +PVI V+A + R + G E Y+ KP + + + Sbjct: 221 EVLRQLKADQNLQSLPVIMVSAIDETAEVVRCIEMGAEDYLHKPYDPVLLHARVNACL 278 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 71/121 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED ++N ++FR +E GY L G+ A+ LAR +PDVI+MD+ L +I G Sbjct: 1 MPHVLLVEDEQVNREMFRRRLERKGYTVLPADTGLGAVALARSERPDVILMDLGLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+++K D IP+I ++A A +++ GC+ + +KP++ + +++ Sbjct: 61 WEATRRLKADPATAPIPIIVLSAHATFDAKDKAFAAGCQDFETKPVNWDALYRKLDEWLA 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|241205712|ref|YP_002976808.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859602|gb|ACS57269.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 233 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ L + +G+ +G EA D+IIMD+ + SG+ Sbjct: 12 AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++T+ ++ ++ +P+I +TA A G+ + G + Y+SKP + I + Sbjct: 72 DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|149178311|ref|ZP_01856903.1| putative response regulator [Planctomyces maris DSM 8797] gi|148842837|gb|EDL57208.1| putative response regulator [Planctomyces maris DSM 8797] Length = 157 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 66/118 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +DN N +L + GY +G E LE + PD+I++DI + ++SG E Sbjct: 11 KILIADDNHQNCELLDAYLLDEGYETFMAYDGKETLEKVAEIDPDLILLDIMMPKLSGYE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + Q+K+ E ++IP++ +TA GD E+ + GC+ +++KP++ ++ + Sbjct: 71 VCAQLKQSDETKDIPILVITALNEMGDIEKSVQAGCDDFLTKPVNRIELTTRVRSLLR 128 >gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein [Psychromonas ingrahamii 37] Length = 295 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 7/127 (5%) Query: 2 LKK-----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 +K V++V+D+ ++ + + + GY AL NG++AL +A + PDV+++D + Sbjct: 1 MKHNNSDVVLVVDDSPESLGMLNVALNSQGYTALVALNGLQALAIAEKVPPDVVLLDAMM 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++ G E +++K L P+I +T D + + G Y++KPIS + I Sbjct: 61 PQMDGFETCRRLK--LILPNTPIIFMTGLTDVEDVVKGFEAGGVDYVTKPISPDEVIARI 118 Query: 117 KKYIGEA 123 K++I A Sbjct: 119 KRHIETA 125 >gi|312887562|ref|ZP_07747156.1| two component transcriptional regulator, AraC family [Mucilaginibacter paludis DSM 18603] gi|311299932|gb|EFQ77007.1| two component transcriptional regulator, AraC family [Mucilaginibacter paludis DSM 18603] Length = 1363 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVEDNE RD ++ Y ++ NG+E + A P++I+ D+ + + GLE+ Sbjct: 1105 ILIVEDNEDFRFFMRDNLQQH-YKVIEATNGLEGWQKALACHPELIVSDVMMPYLDGLEL 1163 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++K D IPVI +TA + + + K G Y++KP S I IK + Sbjct: 1164 SRKLKTDKRTNHIPVILLTASSGEAKQLECLKSGANDYLNKPFSFEILNVRIKNLL 1219 >gi|300865282|ref|ZP_07110096.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300336755|emb|CBN55246.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 663 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ + SGY NG A+ AR PD+I++DI++ + +G E+ Sbjct: 13 ILIVDDTPENLQVLSATLSESGYKVRGVINGKMAVRAARSAPPDLILLDIRMPDTNGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K DS+ +IPVI ++A D+ + + G E YI+KP + + ++ + Sbjct: 73 CEELKADSQTSKIPVIFISALDEVLDKVKAFQVGGEDYITKPFQVEEVVARVEHQL 128 Score = 130 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 15/135 (11%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D + N L L++ G+ L+ NG +AL L +P +I++D ++ I G Sbjct: 427 SYRILVVDDTQENRLLLVKLLQPIGFEVLEAENGEQALTLWDSWQPHLILLDTRMPVIDG 486 Query: 62 LEITKQIKEDSELQ---------------EIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106 +E+ QI+ + +IA+TA A + + I GC+ ++ KP Sbjct: 487 MEVAIQIRAKEREKQEKSLINHQSPINSYHTVIIALTASAFEERRDEIIAAGCDDFVRKP 546 Query: 107 ISLSIFMETIKKYIG 121 + E + +++G Sbjct: 547 FQEQVIFEKMTEFLG 561 >gi|296133268|ref|YP_003640515.1| response regulator receiver modulated diguanylate cyclase [Thermincola sp. JR] gi|296031846|gb|ADG82614.1| response regulator receiver modulated diguanylate cyclase [Thermincola potens JR] Length = 301 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN L + +ET GY N +A + PD+II+DI L + G E Sbjct: 7 HILIVEDNPLTANQLKSFLETVGYKVSLCLNAEQARNFLTEETPDLIILDIILPDTDGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+E++ L+ IP+I V+A D+ + G + YI+KP ++ + I+ + Sbjct: 67 LCRWIREETRLRLIPIIFVSAKDGLDDKVVGLQAGGDDYITKPFAMEELLARIEVILQR 125 >gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 223 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ ED ++ ++ G+ R+G E L+ DV+I+DI + I GL Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PV+ +TA D G + Y++KP + I+ + Sbjct: 62 VLRTLRSRGNT--VPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118 >gi|293375525|ref|ZP_06621802.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325840212|ref|ZP_08166979.1| putative transcriptional regulatory protein ResD [Turicibacter sp. HGF1] gi|292645865|gb|EFF63898.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325490360|gb|EGC92685.1| putative transcriptional regulatory protein ResD [Turicibacter sp. HGF1] Length = 222 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + + ++ GY +G AL L Q+ D+I++D L ++SG E Sbjct: 2 RILMVDDEVKICEFVQACLDNEGYQTEVAHDGKTALSLFHQYTYDLILLDRMLPDVSGEE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I KQI++ S +IP+I +TA D + GC+ YI KP ++ + IK + Sbjct: 62 ICKQIRQQS---DIPIIMLTAKIEDEDRIEGFQLGCDDYICKPFNIMELLLRIKAILKR 117 >gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 242 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED +L D ++ + Y NG + +E RQH P +I++D+ L Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHSPSLILLDLMLPGCD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I + I++ +P+I VTA + + D + G + YI KP S + ++ + Sbjct: 69 GLTICRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|239502568|ref|ZP_04661878.1| AdeR [Acinetobacter baumannii AB900] Length = 242 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED + ++ G ++ NG +A+E+ D+I++DI+L E++G Sbjct: 13 KQILVVEDEYDIGDIIEQYLKREGMRVIRAMNGKQAIEIHASQPIDLILLDIKLPELNGW 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 73 EVLSKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 268 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ + G+ Q G++A++ AR+ PDV+++D+ L E+ GLE Sbjct: 42 RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 >gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] Length = 241 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. SK209-2-6] Length = 732 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN N + R +IE G NG A+E Q PD+++MD+ + E++G E Sbjct: 577 RILVAEDNRTNQLVIRKMIEKHGAEVEICANGQAAVESFAQSPPDLVLMDVSMPEMNGYE 636 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+E L + +P++A+TA A D E+ + G ++SKP+ ++ ++ I++Y+ Sbjct: 637 ATRRIREGETLAQQPPVPILALTANATPKDREKCLQSGMTDFLSKPVRKAVVLQKIEEYL 696 Score = 96.4 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 +V++V+D E+N + + + + + NG ALE ++ D+ I+D Q+ + G Sbjct: 435 RVLVVDDLEVNRLILQKTLTSWQAQVVLAENGPHALECLEKEEPFDLAILDFQMPGMDGN 494 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + ++ +E Q++PV+ +++ D + + G A + KP+ + + + Sbjct: 495 MLLERFREHPSAQKMPVVLLSSVDAGLDSGKTKGLGFAASLLKPMRAARLKQVL 548 >gi|187921731|ref|YP_001890763.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187720169|gb|ACD21392.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1646 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 58/113 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN + ++ +G+ +G ALE AR PD+++ D+ + + G Sbjct: 659 RLLVVDDNADLREYMSRILRAAGHDVRLASDGQAALEAARAEAPDLVLSDVMMPRLDGFG 718 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + ++ D L++ PV+ ++A A + + G + Y++KP S + + Sbjct: 719 LLRALRADPHLRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 771 Score = 72.1 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE-ISG 61 ++ VED+E +++ GY L+ ++ AL + P D++ D+ + + Sbjct: 1376 TILAVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDMLFTDVVMPGPLRS 1435 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERI-RKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++ +E L I V+ + + G +SKP + ++ + Sbjct: 1436 TELARKARE--RLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKVRYVL 1492 Score = 64.4 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+EL +L+ T + L+ +A ++ +H V++ D+ L SG++ Sbjct: 1531 RILLVEDDELIRVSTAELLRTFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1590 Query: 64 I-TKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +E +L+ VI +T + + +R + KP ++ +K + Sbjct: 1591 LALDVCRERPDLR---VIFLTGYDLVLTPAQRAVLPHAM-LMRKPYDPLDLIDALKTPLR 1646 >gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 230 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED ++ D + G+ NG EA + R PD +I+D+ L GL I Sbjct: 7 ILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEAEDAIRTKTPDCVILDLMLPGKDGLSI 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K +++ ++P+I +TA + D G + Y+ KP S + ++ + A Sbjct: 67 CKDVRK---FSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRA 122 >gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 236 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ VED+++ + + +E G++ +G+ LE R +PD+ ++D+ + + G+ Sbjct: 5 HVLFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP ++ + I+ + Sbjct: 65 LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120 >gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + ++ G+ +G + L LARQ DV+++DI L +SG Sbjct: 2 RVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGYN 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + KQ++ + +P++ ++A + D G + Y++KP S + + ++ + Sbjct: 62 VCKQLRAEENW--VPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRR 118 >gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++V++VED ++ + +E GY +G E+A + +++++D+ L E++ Sbjct: 1 MNERVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ +PVI +TA D+ + G YI+KP ++ + ++ + Sbjct: 61 GIEVLRRLRQ--AGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNIL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + R + +G++ R+G E L+LA Q +++I+D+ L + G + Sbjct: 2 KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ +++ PV+ +TA D + + G + Y+ KP S + ++ + Sbjct: 62 LLRELRK---VRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR 117 >gi|298387999|ref|ZP_06997547.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259265|gb|EFI02141.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1377 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED++ + L Y ++ NG E + +A ++ P +II DI + G E + Sbjct: 1127 LIIEDHDEMREYLCSLF-KEDYNVIEAGNGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1185 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E+ IPVI +TA A D + + G + YI KP + + E +K I + Sbjct: 1186 REIRENKRTFHIPVIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQ 1242 >gi|262408382|ref|ZP_06084929.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262353934|gb|EEZ03027.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 1524 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1238 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1296 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S ++ + Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLL 1351 >gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603] Length = 221 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED++ +L + + T Y +G+E + + D+I++D+ + ++G E Sbjct: 5 HILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+ S +P+I +TA + D+ + G + YI+KP S + + ++ + + Sbjct: 65 VAKMIRSQS---NVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 121 >gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 232 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + G+ R+G+ A++ A + +PD +++D+ L I G Sbjct: 1 MSTILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ D + +PV+ +TA + D G + Y++KP S+ + +K + Sbjct: 61 LEVCRRIQAD---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|212692265|ref|ZP_03300393.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855] gi|212665142|gb|EEB25714.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855] Length = 1357 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++EDNE L Y + NG E +++A PD+II DI + G Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAISKIPDLIISDIMMPVKDGFTCC 1166 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E IP++ +TA A D + K G + Y+ KP + + ++ I Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221 >gi|162453349|ref|YP_001615716.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161163931|emb|CAN95236.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED K+ + +G+ L G E + LA +PD++++D+ L +I G Sbjct: 1 MARILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQRPDLVLLDLMLPDIPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ Q IPV+ V+A + D + G Y+ KP S+ + ++ + Sbjct: 61 TEVCRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|149198961|ref|ZP_01876002.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155] gi|149137956|gb|EDM26368.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155] Length = 704 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 61/117 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN N+++ + L + G++AL + KP +I++DI + + G E+ Sbjct: 9 ILIVDDNANNLQVLFKTLAVLDAKVLVAKGGLQALVTVEKRKPSLILLDIMMPDKDGYEV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++KE+ E ++IP+I ++A D+ + G +I+KP + +K + Sbjct: 69 CAELKENEETKDIPIIFLSALGQVQDKVKGLDLGAVDFITKPFQAEEVVSRVKTQLR 125 >gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 235 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++L ++ G+ + +G EAL++AR+ +PD I+D+ + + G E Sbjct: 10 RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGFE 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ E + PV+ +TA G + Y++KP SL + ++ + Sbjct: 70 LLTKLR--GEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 >gi|110633701|ref|YP_673909.1| response regulator PleD [Mesorhizobium sp. BNC1] gi|110284685|gb|ABG62744.1| response regulator receiver modulated diguanylate cyclase [Chelativorans sp. BNC1] Length = 457 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D N++L + Y + R+G +A+++ K DV+++D+ + + Sbjct: 1 MTARILVVDDVPANLRLLEARLLAEYYDVVTARSGPDAIDICESSKIDVVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K D IPVI +TA D R + G + +++KP++ + +K Sbjct: 61 GFEVCRRLKADPLTTHIPVIMITALDQPSDRVRGLEAGADDFLTKPVNDLQLLTRVKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 77.5 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 44/118 (37%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++++++ + +++ + + E L A + + II+ L + Sbjct: 158 VLLIDEDKAAGRQLARMLQDH-FALDAVDDPQEGLVRAAERSYECIIVSSSFVAYDPLRL 216 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 Q++ + +P+I + R + Y+ +P+ + ++ I Sbjct: 217 CSQLRAMDRTRLVPIILFAGEGDETVIIRGLELAVNDYVLRPVERQELIARLRTQIRR 274 >gi|325859665|ref|ZP_08172795.1| response regulator receiver domain protein [Prevotella denticola CRIS 18C-A] gi|325482591|gb|EGC85594.1| response regulator receiver domain protein [Prevotella denticola CRIS 18C-A] Length = 716 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN+ + ++ + Y L +G + L+LA+++ PD+I+ D+ + + GLE Sbjct: 467 TVLVVDDNKDIRAYLQLTLQDT-YRVLLASDGRQGLQLAKENIPDLIVSDVMMPVMDGLE 525 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+++ IPV+ +TA + + G +AYI+KP S + I + Sbjct: 526 LCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKVRIGNLL 582 >gi|298483251|ref|ZP_07001430.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298270568|gb|EFI12150.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1314 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN + E GY + +G+EAL+L R H PD+I+ D+ + ++G Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K IKED + IPVI +TA + + K G + Y+SKP + + ME I+ + Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 >gi|295085850|emb|CBK67373.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1314 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN + E GY + +G+EAL+L R H PD+I+ D+ + ++G Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K IKED + IPVI +TA + + K G + Y+SKP + + ME I+ + Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 >gi|293369312|ref|ZP_06615899.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635642|gb|EFF54147.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1139 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN + E GY + +G+EAL+L R H PD+I+ D+ + ++G Sbjct: 883 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 940 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K IKED + IPVI +TA + + K G + Y+SKP + + ME I+ + Sbjct: 941 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 999 >gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus caldus ATCC 51756] gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus caldus ATCC 51756] Length = 240 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++V+D+ + +E + + + + D++++D+ + Sbjct: 1 MAKARILLVDDDPRLRSILLRYLEMQDFSVCGVASTALMDRMLEREFFDLLLLDVMMPGE 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E +++ ++P+I +TA D + G + Y++KP + I+ Sbjct: 61 DGFEACARLRRQE--PQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAV 118 Query: 120 IGEA 123 + + Sbjct: 119 LRRS 122 >gi|237722073|ref|ZP_04552554.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229448942|gb|EEO54733.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1314 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN + E GY + +G+EAL+L R H PD+I+ D+ + ++G Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K IKED + IPVI +TA + + K G + Y+SKP + + ME I+ + Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 >gi|237716960|ref|ZP_04547441.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262405729|ref|ZP_06082279.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294644469|ref|ZP_06722230.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294806819|ref|ZP_06765645.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229442943|gb|EEO48734.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356604|gb|EEZ05694.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292640191|gb|EFF58448.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294445989|gb|EFG14630.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1314 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY--IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+DN + E GY + +G+EAL+L R H PD+I+ D+ + ++G Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ K IKED + IPVI +TA + + K G + Y+SKP + + ME I+ + Sbjct: 1116 YKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174 >gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] Length = 245 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + K+++V+D++ + + +E GY + NG+EAL++ + ++I+DI + + Sbjct: 11 MAQPKILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGM 70 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL T +I+E + IP+I ++A + D+ G + Y+SKP + +K Sbjct: 71 DGLSATMKIRES---KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQ 127 Query: 120 IGE 122 + Sbjct: 128 LRR 130 >gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630] gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196] gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291] gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile] gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196] gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291] Length = 234 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++ +DN ++ L+ GY + NG EA+ L D+II+D+ + +G Sbjct: 7 KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDS-TIDLIILDVVMPVKTGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E + P++ +TA D+ G + Y+SKP S S + +K + Sbjct: 66 VACNEIREKTTA---PILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRR 122 >gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 250 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ + + +E GY +G+ LE R D++I+D+ L E+ G+ + Sbjct: 21 VLVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAHDLLILDVMLPELDGIGL 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E+S +PV+ ++A D + G + Y+ KP+ + + I+ + A Sbjct: 81 CRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRA 136 >gi|291619550|ref|YP_003522292.1| BaeR [Pantoea ananatis LMG 20103] gi|291154580|gb|ADD79164.1| BaeR [Pantoea ananatis LMG 20103] Length = 233 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V+I+ED+ + ++ GY + NGM LE + +PD+I++D+ L ++G Sbjct: 6 TKRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEHVGRWQPDLILLDVMLPVMNG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ I+ + PVI VTA D + G + Y+ KP + ++ + Sbjct: 66 TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 122 Query: 122 EA 123 A Sbjct: 123 RA 124 >gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1267 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 67/117 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN +N + +++E+ G NG EA+E R D+++MD+Q+ + G+E Sbjct: 905 HILLVEDNLINQMVAVEILESVGISVDVAENGREAVEKVRAGNYDLVLMDLQMPVMDGME 964 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ ++++ +++P+IA+TA A+ G E+ G +ISKP + + K + Sbjct: 965 ATRILRDEPLYRDLPIIALTAHAISGFREQCIGLGMNDFISKPFLPEDMLLILSKCL 1021 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61 +V+IV+DNE + ++ + + +G EA++L D++++D ++ + G Sbjct: 760 RVLIVDDNEASQEILASYLVDLNFDVTVLSSGQEAIDLLVKEGEAFDILVIDWKMPGLDG 819 Query: 62 LEITKQIKEDSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +E + IKE +L++IP+I + +A+ + + G +A+++KP + S M+ I Sbjct: 820 VETIRLIKEKMKLEKIPIIIMASAYDLDELRNVFSELGIKAFLNKPHTPSQLMDAI 875 >gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1] Length = 1378 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 53/115 (46%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ +DN + L+ +GY +G +AL R D+++ D+ + + GL Sbjct: 630 HVLVADDNADMREYLIRLLLGAGYQVSAVDDGRQALGAIRTKAFDLVVSDVMMPHLDGLA 689 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++ D +PV+ ++A A + + G + Y+ KP + + + ++ Sbjct: 690 LVAALRADPRTASVPVLLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRA 744 >gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 1195 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++ ED+ N+ ++E G RNG EALE +I+MDI + E+ G Sbjct: 1074 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDG 1133 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +I+ D +P+IA+TA AM D R + G + Y+SKPI + + + ++ Sbjct: 1134 LTAMGEIRRDPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1193 Query: 122 E 122 + Sbjct: 1194 Q 1194 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ ++ RDL + + + L L R +P +++D+ L + SGL + Sbjct: 808 IIAVEDDAAFAEILRDLTHELDFDFVHASSAASGLALVRDMRPAAVLLDVGLPDRSGLTV 867 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +K D + IP+ V+A ++ G Y KP + S I++ Sbjct: 868 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 919 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 47/94 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + R L+++ + EALE + D ++ D+ L + +G Sbjct: 928 KRVLVIEDDAPMRESIRALLQSENTEIVAVATLTEALEYLGKFSFDCVVTDLALPDGTGY 987 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ ++ +PVI T + +EE + Sbjct: 988 DLLERLAANTAHAALPVIVYTGRMLSDEEEHRLR 1021 >gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL J2-064] gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816] gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220] gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott A] Length = 231 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|313682907|ref|YP_004060645.1| pas/pac sensor protein [Sulfuricurvum kujiense DSM 16994] gi|313155767|gb|ADR34445.1| putative PAS/PAC sensor protein [Sulfuricurvum kujiense DSM 16994] Length = 467 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+++ ++++ + + NG +AL+ +++ D+I++D+ + + GL Sbjct: 8 TILVVDDEPRNIQVVSNVLKEINECHIIYAVNGEQALQRVEKNEIDLILLDMMMPLLDGL 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K++K DS IP++ +TA + + + G YISKP + + ++ Sbjct: 68 ETCKRLKADSRYSSIPIVFLTAKNDEESLIKGFEAGAVDYISKPFLRRELIARVTTHL 125 >gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces pristinaespiralis ATCC 25486] gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces pristinaespiralis ATCC 25486] Length = 228 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] Length = 226 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I++D+ L +E G+ A+ +G ++ A D II+D+ L +++ Sbjct: 1 MNGNILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+E E PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 61 GFEVLKAIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842] Length = 233 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IV+D + KL ++ GY LQ +G E LE+ ++ +I++DI + +I Sbjct: 1 MSKGTILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + +++E + E+P+I ++A D+ G + Y++KP + + IK Sbjct: 61 DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a] Length = 250 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + GY +G +AL+ + +PD++++D+ + I GLE Sbjct: 9 RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRDQPDIVVLDVMMPRIDGLE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 +Q++ + ++PV+ +TA D G + Y+ KP +L Sbjct: 69 TCRQLRARGD--DVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELF 116 >gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 233 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D L + +G+ NG +A+ + +PD+I++D+ L +++G Sbjct: 9 RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPDMNGFG 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK+++ P++ +TA D+ G + Y++KP SL + IK + Sbjct: 69 VTKRLRGAGYTA--PILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRR 125 >gi|16330585|ref|NP_441313.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653076|dbj|BAA17993.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 366 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 V+IV+D+ + + L++ Y G +AL +A P D+I++DI + EI G Sbjct: 11 ATVLIVDDSPDTLTMLSGLLKDH-YRIKIASKGEQALAIAASMPPPDLILLDIMMPEIDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++K D++ + IPVI +TA DE+ G YI+KPIS I + ++ ++ Sbjct: 70 YEVCTKLKADTQTKNIPVIFLTAKTDVADEQHGFSLGAVDYITKPISPPILLARVRTHL 128 >gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e] gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23] gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988] gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S] gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161] gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578] gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923] gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e] gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes] gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23] gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578] gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923] gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 231 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|312131048|ref|YP_003998388.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907594|gb|ADQ18035.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1336 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVEDNE L + + NG E ++ A Q PD+I+ D+ + ++GL Sbjct: 1084 QKLLIVEDNEDLRNYLVSLFHSH-FETHSAANGKEGMDKALQILPDIILSDVMMPVMNGL 1142 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++IK + + IP+I +TA A E + G + YI KP + + I I Sbjct: 1143 EFCERIKNNPKTAHIPLILLTARAATLHELEGLESGADDYIVKPFNPKVLHTKILSLI 1200 >gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162] Length = 968 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 73/121 (60%), Gaps = 5/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---QHKPDVIIMDIQLQEISG 61 +++VEDNELN ++ +++ G++ NG EA+E + K D+++MD+Q+ ++G Sbjct: 847 ILLVEDNELNREIAVEILNEYGFLVDTAENGAEAVEKVKNSTSGKYDLVLMDVQMPVMNG 906 Query: 62 LEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TKQI+ D L I ++A+TA A D ++ + G + ++SKPI + + T+++ Sbjct: 907 YEATKQIRALDDPALSGITILAMTANAFDEDRKKALEYGMDGFLSKPIVIEELISTLQRN 966 Query: 120 I 120 + Sbjct: 967 L 967 Score = 98.3 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 7/125 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 K ++V+D+ ++ G + T +G EA+ ARQ I+D +L + Sbjct: 704 KALVVDDDFNTCDSVTKMLVRVGMRSEWTLSGKEAVLRARQSMELGDAFHAYIIDWRLPD 763 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+E+T+QI+ + + P+I +TA+ E R G A+ +KP+ +S ET+ Sbjct: 764 MNGIEVTRQIRSLGD--DTPIIILTAYDWSDIEAEARAAGVTAFCAKPLFMSDIRETLMT 821 Query: 119 YIGEA 123 IG++ Sbjct: 822 AIGQS 826 >gi|294808197|ref|ZP_06766963.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294444606|gb|EFG13307.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1483 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + Y ++ +G E A ++ PD+II D+ + E G+E+T Sbjct: 1197 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1255 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S ++ + Sbjct: 1256 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLL 1310 >gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 231 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED L ++ Y + EALE ++ D+ I+DI L ++S Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLNICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis EAS054] gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] Length = 253 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + G+ +G A+ D +++D+ L I G E Sbjct: 24 RILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 84 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1] gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32] gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR [Shewanella putrefaciens 200] Length = 241 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ L IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQGSL--IPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 229 Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++IVED + ++ GY + NG E LE+A + D+I++D+ L E+ Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++++ ++ ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQQE---KDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002] Length = 225 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ ++ ++E G+ + +G A+E + +PD++++D+ L ++ Sbjct: 1 MPQKILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 G++I + I+++S +P++ +TA D + G + YI+KP + Sbjct: 61 GIDICRLIRQNS---TVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELI 110 >gi|284052122|ref|ZP_06382332.1| response regulator receiver sensor signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291571292|dbj|BAI93564.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 378 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++ ++ +GY + NG +A+ +A PD+I++DI + ++G ++ Sbjct: 13 ILIVDDKPENLQFLFTMLTENGYDVRRVINGKQAINVALFEPPDLILLDIMMPNLNGYDV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +KE SE ++IP+I ++A ++ + G YISKP L + ++ + Sbjct: 73 CKILKEKSETKDIPIIFLSALKDVSEKVKGFNVGGVDYISKPFELLEILARVENQL 128 >gi|251794919|ref|YP_003009650.1| signal transduction histidine kinase, LytS [Paenibacillus sp. JDR-2] gi|247542545|gb|ACS99563.1| signal transduction histidine kinase, LytS [Paenibacillus sp. JDR-2] Length = 1112 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 69/119 (57%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEISG 61 K+++V+D+ N+K+ ++L +S Y NG +AL+L +QH+ ++ +++D+ + +SG Sbjct: 772 KILLVDDDSSNIKVLQELFPSSRYHVFVAYNGEDALKLIKQHRGELSLVLLDVMMPGLSG 831 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I+E++ L ++PV+ +T D + G ++ KP S + ++ + Sbjct: 832 YEVCRRIREENPLYQLPVLLLTVRNSPADIALGFEAGANDFLVKPFSGKELLARVQTLL 890 >gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 968 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ L+ + ++E SGY ++G EAL+ + D+I+MD+Q+ + G+E Sbjct: 842 RILLAEDDSLSSITCKRMLEKSGYSVTAVKDGQEALQRLTKEDFDLILMDVQMPVMDGVE 901 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ S L IP++A+TA+AM GD+E G + YISKP+ + +E I++ I Sbjct: 902 ATKAIRGASNLGAKSSIPIVAMTAYAMTGDKESFLAAGMDDYISKPVDKAALVEVIERVI 961 >gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603] gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 7 RLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + Y+ KP I+ + + Sbjct: 66 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRS 123 >gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 231 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+I++D++ L +E G+ +G EA+ +Q + D +++DI L + Sbjct: 1 MKDHVLIIDDDKELCALLAQYLELQGFEVSSIHDGAEAVTHLQQQEYDTLVLDIMLPGMM 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++I+ + + PV+ +TA D + G + Y+ KP + ++ + Sbjct: 61 GLDVLRKIR---DFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|71909509|ref|YP_287096.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71849130|gb|AAZ48626.1| Response regulator receiver [Dechloromonas aromatica RCB] Length = 121 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 59/117 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D+ D++ +GY G E + A+ KPD+I+MD+ + ++G Sbjct: 4 KNILVVDDSPTERFFTVDVLTKAGYQVSTAETGEEGIAKAKATKPDLILMDVVMPGLNGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T+ + D E + IP+I T+ + D+ + G Y+ KP++ ++ I Sbjct: 64 QATRTLTRDEETKGIPIIVCTSKGQETDKIWGLRQGAIDYLVKPLNPEELLQRIAAL 120 >gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 991 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +N ++ ++ +G NG+EAL+ D+++MD Q+ E+ G E Sbjct: 736 RILVVEDSVVNQQVLVAMLSKNGCSVDIAENGVEALKALGTTPYDLVLMDCQMPEMDGFE 795 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI---FMETIK 117 T++I+ +I VIAVTA AMKGD ER G YI KP+ S +E I Sbjct: 796 ATRRIRSGEHGVLNPDIAVIAVTANAMKGDRERCLHAGMNDYIPKPVRTSDIVGLLERIG 855 Query: 118 KYIGE 122 +Y E Sbjct: 856 RYSRE 860 >gi|312130582|ref|YP_003997922.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907128|gb|ADQ17569.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1365 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVEDNE ++ +E + Y + NG E + R PD++I DI + G+ + Sbjct: 1107 VLIVEDNEEIRQVISQSLEKT-YAINEAANGQEGWQKVRSLLPDLVITDIMMPVEDGITL 1165 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK++ E IPV+ +TA + G + Y++KP + I+ + Sbjct: 1166 LRNIKQNLETNHIPVLLLTARTAMESVIEGLQSGSDDYLTKPFHPEVLSLKIRNIL 1221 >gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T17] gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T17] Length = 237 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + G+ +G A+ D +++D+ L I G E Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 84 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 232 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 +++++VED + D + SG+ A +G A+ PD+ ++DI L + G Sbjct: 6 QRILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIMLPGMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q + ++ P+I +TA + D + G + YI KP S + ++ + Sbjct: 66 LEVLRQARRRTDR---PIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLR 122 Query: 122 EA 123 + Sbjct: 123 RS 124 >gi|224535281|ref|ZP_03675820.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM 14838] gi|224523089|gb|EEF92194.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM 14838] Length = 1328 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE + L++ Y LQ RNG+EAL + + + ++I+ DI + E+ G+E+ Sbjct: 1080 LLVEDNEDLLSSMVRLLQGR-YHILQARNGVEALAVLEKEEVNLIVSDIMMPEMDGIELC 1138 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IKE E IPVI +TA D+ + G + YI KP+ LS+ + I + ++ Sbjct: 1139 RRIKEKFETCHIPVILLTAKITDEDQVMGYESGADGYICKPLRLSVLLAKIDNLLKKS 1196 >gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320] gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC 29906] gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response regulator) [Proteus mirabilis HI4320] gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC 29906] Length = 240 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV+IV+D+ L + G+ N + L + +I++D+ L G Sbjct: 4 SYKVLIVDDDLRLRSLLERYLTEQGFQIRTAANSDQMDRLLTRESIHLIVLDLMLPGEDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++++ + IP+I VTA + D + G + YISKP + + I+ + Sbjct: 64 LSICRRLRSQNN--PIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|209550328|ref|YP_002282245.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536084|gb|ACI56019.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 233 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ L + +G+ +G EA D+IIMD+ + SG+ Sbjct: 12 AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++T+ ++ ++ +P+I +TA A G+ + G + Y+SKP + I + Sbjct: 72 DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 222 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I ED ++ +G+ +G++AL+ A + D++I+D+ L G Sbjct: 1 MSRILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I KQ++ E ++P+I +TA D+ + G + Y++KP + + ++ + Sbjct: 61 FQILKQLRGQGE--KVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLR 118 >gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 233 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 7/125 (5%) Query: 2 LKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 +K +++V+D E + + + +E Y NG EA+E Q+ D +I+D+ L Sbjct: 1 MKTDGRNILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLMLP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++SG EI K+I+ +S+ +P++ +TA D G + Y+ KP S + + Sbjct: 61 DLSGEEICKKIRIESQ---VPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVN 117 Query: 118 KYIGE 122 Sbjct: 118 AIWRR 122 >gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] Length = 229 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 61 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 233 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IV+D + KL ++ GY LQ +G E LE+ ++ +I++DI + +I Sbjct: 1 MSKETILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + +++E + E+P+I ++A D+ G + Y++KP + + IK Sbjct: 61 DGIHMCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis ZC1] Length = 929 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K ++IV+D+ N+ + +E G L ++G+E LE+ + + D+++MDI + + G Sbjct: 790 KNILIVDDDNRNIYALKTALEKRGMHILVAKDGLECLEVLQANPDIDLVLMDIMMPNMDG 849 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E I++ + ++P+IA+TA AMK D ++ + G YISKP++L + ++ ++ Sbjct: 850 YEAMTIIRQQMKRIDLPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 908 >gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM 13479] gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM 13479] Length = 223 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D + L + +GY ++G EA+E+ + D+I++DI L I G Sbjct: 1 MIKILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHERFDLILLDIMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I + I+ IPVI +TA D + K G + Y+ KP + + ++ + Sbjct: 61 FDIMEYIRPME----IPVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 236 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 71 GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3] gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1055 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+ N + L+E +G+ L NG +A EL D I+MDIQ+ + G+E Sbjct: 931 HVLLVEDDPSNRLPIQKLLEKAGHEVLLAENGRQAFELLAASDIDCILMDIQMPVMDGIE 990 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+E + L +++P+IA+TA+AM GD+E+ G Y +KP+++ ++ + + + Sbjct: 991 ATRIIRESAALGPKKDVPIIALTAYAMDGDKEKFLAAGMNGYAAKPVTIENLLQKMDEVL 1050 >gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] Length = 240 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D++ ++ L+E GY L+ NGMEAL++ K +II+D+ + E++GL Sbjct: 11 TVLVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKVHLIILDVMMPELNGLS 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E + IPVI ++A + D+ G + Y++KP + + M +K + Sbjct: 71 ALMKIREKN---NIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRR 126 >gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] Length = 226 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED +++ + Y +G EAL D +++DI + ++ G+ Sbjct: 2 RILICEDEIDLADGLCTILKGNKYSVDVVYDGEEALTYLEAENYDAVVLDIMMPKVDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+E+ IPVI +TA + D+ G + Y++KP + + ++ Sbjct: 62 VLKTIRENGN--SIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLARLRAITRR 118 >gi|91774108|ref|YP_566800.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91713123|gb|ABE53050.1| PhoP-containing response regulator receiver [Methanococcoides burtonii DSM 6242] Length = 356 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +L R + T Y + NG +A++ + + PD+I++DI + ++ G E Sbjct: 227 KILVVDDEPDIPELIRLSLATEPYDFIVAYNGEDAVKKSIEELPDLILLDIMMPDMDGYE 286 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++KED ++I VI V+A D+ + + G + YISKP IK + Sbjct: 287 VVERLKEDPYARDIAVIMVSAKTEIEDKLKGMELGIDDYISKPFDKREINARIKMVMKR 345 >gi|37522691|ref|NP_926068.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213693|dbj|BAC91063.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 358 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D N+ L + L+ + GY +G E L ++ PD++++D+ + + G E Sbjct: 7 RILVVDDLPDNIALVQFLLASEGYEIETASSGAECLARVYKNSPDLLLLDVMMPGMDGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +T+++K D L +P++ VTA G + +I KPI + ++ + Sbjct: 67 VTRRLKSDGHLPFLPILLVTASDRPS-AVLGLDAGADEFIRKPIEPDELLARVRSLLR 123 >gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family [Cupriavidus metallidurans CH34] Length = 223 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + D + +GY+ +G++A L ++ D +I+D+ L ++ GL Sbjct: 2 RILLIEDEATLARQLADTLSQAGYVVDHASDGIDAEHLGTENPYDAVILDLGLPKLDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+ ++ +PV+ +TA ++ G + Y++KP + I+ I + Sbjct: 62 VLKRWRQAGNG--VPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRS 119 >gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 858 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V++ EDNE+N ++ ++ + G NG+EA++ + ++ +++MDIQ+ + G Sbjct: 740 KTVLLAEDNEINQEIAIAILNSFGLEVELAENGLEAVQKIQTNQYALVLMDIQMPIMDGY 799 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+ I++D+ +P+IA+TA AM D K G +I KP + K+ Sbjct: 800 QATRLIRKDNRFNALPIIAMTANAMNTDRAESLKAGMNEHIGKPFDPEALKRLLGKWCR 858 >gi|294643137|ref|ZP_06720968.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292641520|gb|EFF59707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 947 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 702 VLVIDDNADIRSYVRRLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 760 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 761 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 816 >gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ +H DV ++D+ L I G Sbjct: 4 MSTILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ +++ +I +TA D+ + G + YI+KP S I+ + Sbjct: 64 FQVCKAIREEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] Length = 229 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + ++ Y + G EAL K D+ ++D+ L +I G EI Sbjct: 3 ILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVMLPDIDGFEI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+E PVI +TA D+ G + YI KP + + +K + Sbjct: 63 LKRIREKYTF---PVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117 >gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571] gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571] Length = 245 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+ L D + GY +G + +PD++I+DI L GL Sbjct: 9 TLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLPGEDGLS 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++PV+ +TA + D + G + Y+ KP + + I+ + Sbjct: 69 LCRRLRAQG---DVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRR 124 >gi|312891036|ref|ZP_07750560.1| histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296503|gb|EFQ73648.1| histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1400 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++EDNE +D + Y + +G++ + P +I+ DI + ++G+++ Sbjct: 1144 VLLIEDNEDFRFYLKDNL-KEHYRVTEAVDGIDGWQKVLATHPSLIVSDISMPGMNGIDL 1202 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +IK DS + IPVI +TA + ++ + + G Y++KP + I + IK + + Sbjct: 1203 CHKIKNDSRTKHIPVILLTAITGQKEQLKGLETGASDYLTKPFNFEILLSKIKNQLSQ 1260 >gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 219 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + ++ +G+ T G +A+ LA Q D+II+D+ L +I G Sbjct: 1 MSRILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ PVI +TA + D +GG + Y+ KP S + I+ + Sbjct: 61 FEVLQQLRGQGVG--TPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118 >gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 319 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|257059245|ref|YP_003137133.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] gi|256589411|gb|ACV00298.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8802] Length = 715 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 61/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D N++L RD ++ GY GM AL A+ D+I++DI+L + G EI Sbjct: 10 LIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVTDLILLDIKLPDYDGYEIC 69 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + IPVI ++A D+ + G YI+KP + + + ++ Sbjct: 70 RRLKADEQTAHIPVIFLSALNETFDKVQGFAVGGADYITKPFQIEEVLARVATHL 124 >gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] Length = 222 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 71/123 (57%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++VED+ + +L + + ++GY +G+E +++ + ++I++DI + + Sbjct: 1 MEKYILVVEDDYKSQQLLQQFLTSNGYKVDCANDGLEGIQMYKDRNYNLILLDIVMPNLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+++S ++P+I VTA + + D+ + C+ YI KP S ++ ++ I+ + Sbjct: 61 GFSMCKMIRKES---DVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] Length = 231 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D + L ++ Y+ + +A+ D+ I+DI L +++ Sbjct: 1 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I++ P+I +TA + D+ G + Y++KP + +K + Sbjct: 61 GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 236 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 71 GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 250 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 9/126 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-------KPDVIIMDIQL 56 +++IVED E+ + +E GY AL +G ALEL + + D++++D+ L Sbjct: 20 RILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML 79 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I+GL+I + ++ + IP++ ++A A + D + G + Y++KP S+ + Sbjct: 80 PQINGLDICRLLRYHGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137 Query: 117 KKYIGE 122 + I Sbjct: 138 RALIRR 143 >gi|158521150|ref|YP_001529020.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] gi|158509976|gb|ABW66943.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfococcus oleovorans Hxd3] Length = 348 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D E N++L + GY NG EA+ A+ PD+IIMDI + + G E Sbjct: 5 KILLVDDEESNLRLLTQWLVPLGYDFELAANGKEAVRKAKDGMPDLIIMDIMMPVMDGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K D + IP+I VTA + + + ++SKPI S + ++ + Sbjct: 65 ACKILKTDKGTENIPIIMVTALHDRESKLKGLSVSANDFLSKPIDHSELIIRVQNLL 121 >gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 232 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 61/113 (53%), Gaps = 3/113 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E G+ + +G A++ R PD++++D+ L ++ Sbjct: 8 MAPKILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLMLPGMN 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 G++I + I+++S +P++ +TA D + G + YI+KP + Sbjct: 68 GIDICRIIRQESA---VPIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELI 117 >gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1888 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ + + ++ + G+ + NG EA+ L +Q +P +I MD+++ + G E Sbjct: 1668 RILVVDDSIDSRLVLVKILTSIGFAVQEAANGTEAIALWQQWQPHLIFMDMRMPIMDGYE 1727 Query: 64 ITKQIKEDSELQEIP-----VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 TK IK E IP +IA+TA A + E K GC+ YI+KP ++ + + Sbjct: 1728 ATKIIKAREETS-IPNRKTIIIALTANAFEEQREATIKAGCDDYINKPFREEELLKKLSE 1786 Query: 119 YI 120 Y+ Sbjct: 1787 YL 1788 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 55/117 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D N+ D++ Y +G A+ A PD+I+++ + +I+G E Sbjct: 7 KILLVDDKLENLHFLSDILHNQVYQVQSALSGELAINTALAFPPDLIVLNFLIAKINGYE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K + Q+IP+I +E + G YI++P + I+ + Sbjct: 67 VYQNLKSHHKTQDIPIIFFGVLDELSEEVNVCDLGDVDYITQPFQAKEVLLRIQNQL 123 >gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED+ ++ ++ + GY + R+G A+ A + +I++DI L + G++ Sbjct: 2 KVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGMK 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+E +++IPVI +TA + D+ G + YI+KP S + I + Sbjct: 62 VLSRIRE---VKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRR 117 >gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 224 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + +L + +++ G+ +G+ L++A + D+ I+D+ L ++ G+EI Sbjct: 3 ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPDLDGVEI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ P++ +TA D G + Y+ KP +++ + + + A Sbjct: 63 CRHLRA--ARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRA 119 >gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1355 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N K+ +++ GY A NG+E LE + DVI+MD+Q+ + GLE Sbjct: 1090 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALERQPYDVILMDMQMPIMDGLE 1149 Query: 64 ITKQIKEDSELQEIP------VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +QIK+ + QE P +IAVTA AM+ D G + YISKPI + ++ ++ Sbjct: 1150 AARQIKKRYDNQEKPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLR 1209 Query: 118 K 118 Sbjct: 1210 N 1210 Score = 66.3 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 57/124 (45%), Gaps = 12/124 (9%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+++I++ + N ++ ++ G + T + EA+ +Q K D+ I+++++ + G Sbjct: 942 KRLLIIDSHPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQGKTFDIAIVEMEIANLDG 1001 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMK-----GDEERIRKGGCEAYISKPISLSIFMETI 116 Q+++ S ++P++ + + + + A+++KPI S + Sbjct: 1002 FNFATQVRQTSAGVDLPLVMLISVGQQNFNPTDHRD------FVAFLNKPIKQSPLYNIL 1055 Query: 117 KKYI 120 + Sbjct: 1056 INVL 1059 >gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 795 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V++ EDN++N K+ R ++ +G+ +G EAL+ R + D++ MD Q+ ++G Sbjct: 670 SARVLVAEDNKVNQKVIRMMLGRAGFDCELVNDGKEALDRLRDEEFDLVFMDCQMPILNG 729 Query: 62 LEITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T++I++ S Q +P+IA+TA A+KG EE+ + G +++KPI + + K+ Sbjct: 730 FEATEEIRKSSGSQSGVPIIALTANALKGYEEQCLQAGMNDFMTKPIDPNDLRAMLGKW 788 >gi|254413669|ref|ZP_05027439.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179776|gb|EDX74770.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 810 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 65/117 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ ++ R L+ GY + NG +AL+ PD+I++DI + +I G + Sbjct: 22 TILIVDDSPDSLSFLRKLLAEQGYTVRVSLNGRQALQSVDLMPPDLILLDILMPDIDGYQ 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q+K + E Q IP+I ++A D+ + + G YISKPI+ + I+ + Sbjct: 82 VCQQLKANPETQAIPIIFISARKETFDKVKAFEIGAADYISKPIATQEVLVRIEHQL 138 >gi|166032342|ref|ZP_02235171.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC 27755] gi|166028065|gb|EDR46822.1| hypothetical protein DORFOR_02045 [Dorea formicigenerans ATCC 27755] Length = 859 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 5/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQEIS 60 V++VEDNELN+++ R L+E +G + +NG EAL++ R+ + D+I+MDI + + Sbjct: 736 HVLLVEDNELNLEIARYLLEEAGVQVIAAKNGQEALDIFEQSREQEIDLILMDIMMPVMD 795 Query: 61 GLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GLE T++I+ +P+IA++A A D ++ + G +++KP + + I + Sbjct: 796 GLEATRRIRTCTHPRGATVPIIAISANAFADDIQKAKNAGMNEHLAKPFEMEKVLRAISR 855 Query: 119 Y 119 Y Sbjct: 856 Y 856 >gi|160914841|ref|ZP_02077055.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991] gi|158433381|gb|EDP11670.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991] Length = 246 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 5/125 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + K++IVED+ L ++T+ Y NG AL H D++++D+ L + Sbjct: 1 MSQNIKILIVEDDGPIRNLIATALQTNAYKYDLAANGKTALLALSTHHYDIVLLDLGLPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G+EI Q++ P+I ++A D+ G + Y++KP S+ + ++ Sbjct: 61 KDGIEIIDQLR---TFSTTPIIVISARTNDEDKIAALDAGADDYLTKPFSVEELLARVRS 117 Query: 119 YIGEA 123 + A Sbjct: 118 TLRRA 122 >gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185] gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185] Length = 229 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ +I++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + ++P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|71083864|ref|YP_266584.1| phosphate regulatory protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062977|gb|AAZ21980.1| phosphate regulatory protein [Candidatus Pelagibacter ubique HTCC1062] Length = 226 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 67/123 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + IVED + + L + +E GY + NG E +E ++ PD++++D L + S Sbjct: 1 MSVSIHIVEDEQPIITLVKYNLEKEGYKVSSSDNGNEGIEDIKKLFPDLVLLDWMLPDFS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI K +K++ + +EIP+I +TA D+ + G + YI+KP S + IK + Sbjct: 61 GVEICKILKKEKKFKEIPIIMLTAKGEDEDKIKGLNSGADDYITKPFSFPELLARIKALL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|67925981|ref|ZP_00519251.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67852170|gb|EAM47659.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 174 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ L ++ GY + NG E L A++ P +II D + +SG Sbjct: 1 MVQILLIDDDSTIRLLLERTLKRQGYDVVCAGNGEEGLVKAKELHPAMIICDWVMPGVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ +Q+K +L I +T+ D + G + ++ KPI ++ F+ I+ + Sbjct: 61 LQVCRQVKSLPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGLR 120 >gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 225 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D + GY+ ++ +G +AL++ + K +II+D+ + + G Sbjct: 5 KILVVDDESRMRKLVKDFLVKDGYLVVEAEDGQQALDIFYEDKDISLIILDVMMPKRDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I+ +S+ +P+I +TA A + DE + G + YISKP S I + + Sbjct: 65 EVCKEIRTNSK---VPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILRR 121 >gi|296448200|ref|ZP_06890097.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] gi|296254284|gb|EFH01414.1| GAF sensor hybrid histidine kinase [Methylosinus trichosporium OB3b] Length = 1142 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 +++++VED+ N+ ++E G AL R G EALE R+ D I+MDI + E+ G Sbjct: 1022 RRILLVEDDVRNIFSLTAMLEREGAKALIARTGREALECLDREASIDFILMDIMMPEMDG 1081 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE +QI+ E +P+IA+TA AM D E + G Y++KPI + + +++ ++ Sbjct: 1082 LEAIRQIRARKEFAFVPIIALTAKAMSDDRENCLEAGANDYVAKPIDVEKLLSSMRVWMP 1141 Query: 122 E 122 + Sbjct: 1142 K 1142 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ L ++ RDL G+ + EAL LA +P+ +++DI L + SGL + Sbjct: 756 VLIVEDDPLFAQILRDLARELGFKCIVAGTADEALRLASAFRPEAVVLDIGLPDRSGLTV 815 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 + +K D ++ P+ V+ ++ + G YI KP + Sbjct: 816 LELLKRDPAMRHAPIHIVSVHD---YQQVALEMGAVGYILKPAKREHLV 861 Score = 84.4 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 44/89 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + DL+ T G + ALE R + D +++D+ L +SG E+ Sbjct: 878 ILIVEDEGMQRDALIDLLATEGTDIVAVETAEGALEKLRDQRFDCVVLDLMLPGVSGFEL 937 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEER 93 ++ + PVI TA ++ DEE+ Sbjct: 938 LGELSRNERHSLPPVIVYTARSLTIDEEQ 966 >gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 224 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + ++ + + Y NG EAL + + DV+I+DI + + GLE Sbjct: 2 RILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIVDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + +++PV+ +TA D + G + Y+ KP + + I+ + + Sbjct: 62 VLQTLRANG--KQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRK 118 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED E ++ + +E GY + + G EA+E D+I++D+ L IS Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ + + IP+I +TA D+ G YI+KP + + I+ + Sbjct: 61 GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] Length = 229 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++E +I +TA D+ + G + YI+KP S + I+ + Sbjct: 61 LEVCKAIRKENEKMG--IIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 250 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D + + + ++ + NG E L L + H D+I++D+ L +I G Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +QI+ P++ VTA + D+ G + YI+KP + I + Sbjct: 78 ELCRQIR---NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRR 134 >gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208] Length = 231 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1769 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 63/115 (54%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ EDNE N+ + GY +NG EA+ A PD+I+MDIQ+ + GLE Sbjct: 1641 LLAEDNEANISTISSYLTAKGYRIELAKNGQEAINQAVALSPDLILMDIQMPGMDGLEAM 1700 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+I+E EL P+IA+TA AM+ D + G Y+SKP+ L TI+ + Sbjct: 1701 KRIREIPELATTPIIALTALAMESDRKACLLAGANEYLSKPVRLKQLTMTIQDLL 1755 >gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1206 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 77/119 (64%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D + N++L + L+E++G+ RNG+EA L + ++ D+++MDIQ+ E+ GLE Sbjct: 836 ILIVDDVKQNVELIQILMESNGHKVNIARNGLEAFHLFQDNQFDLVLMDIQMPEMDGLEA 895 Query: 65 TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI+ + + P+IA++A + D+++ + G + ++SKPI + + I K+I Sbjct: 896 TRQIRSFEIQNNRTQTPIIALSASVFEEDKQQAKLAGMDGFLSKPIDVDELNQEISKWI 954 >gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1] gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1] Length = 238 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D + L ++ Y+ + +A+ D+ I+DI L +++ Sbjct: 8 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I++ P+I +TA + D+ G + Y++KP + +K + Sbjct: 68 GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 124 Query: 121 GE 122 Sbjct: 125 RR 126 >gi|88603926|ref|YP_504104.1| response regulator receiver domain-containing protein [Methanospirillum hungatei JF-1] gi|88189388|gb|ABD42385.1| response regulator receiver domain protein (CheY-like) [Methanospirillum hungatei JF-1] Length = 124 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 49/119 (41%), Positives = 79/119 (66%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+++EDN NM L L+E+ GY ++ NG+ ++ A++ +PD+I++DIQL E+ Sbjct: 1 MTHKVLVIEDNAQNMYLIHFLLESQGYTVIEAENGLIGIQKAKEERPDIILLDIQLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G EI + ++ + IP+IAVT++AM GD+ERI G YI KPI+ + F++ IK + Sbjct: 61 GYEIARILRSTPGIDTIPIIAVTSYAMAGDKERILAAGATDYIEKPINPATFVDQIKVH 119 >gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 236 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ GY G E+A D++I+D L +GLE Sbjct: 8 RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGLE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ ++ PV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 68 ICQELRRQGKI--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 125 >gi|75910898|ref|YP_325194.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75704623|gb|ABA24299.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 381 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D N + L+ Y +G EA+ +PD+I++D+ + + G+E+ Sbjct: 6 ILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNLFQPDLILLDVMMPGMDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK + Q +P+I VTA K D R K G + +ISKPI+ + + Sbjct: 66 CQRIKAMPQWQSVPIIMVTALTAKEDLARCLKSGADDFISKPINALELRARLHSMLR 122 >gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 226 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED E L+ G+ + +G AL ++ D++++D+ L +SG Sbjct: 1 MTSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKRLRA---VSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 228 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD++++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 226 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED E L+E G+ +G++A+ +H D++++D+ L G Sbjct: 1 MTRILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLMLPGQPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +QI+ +S+ +PVI +TA + D+ + G + Y++KP S + I+ + Sbjct: 61 TEVIRQIRLNSQ---VPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293] gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG E L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQRIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum DSM 5476] gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum DSM 5476] Length = 251 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+ED+ +K ++T+GY G+E L L + PDVI++D+ L +I GL Sbjct: 28 RILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANNPDVILLDLGLPDIDGLT 87 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+++ S +IP+I V+A + ++ G + YI+KP + + I+ + + Sbjct: 88 VLEQVRQSS---DIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALRK 143 >gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 219 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN R+++E +GY+ +G EAL DVII+D+ L +I GLE Sbjct: 2 KILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDIDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+ + PVI +TA D+ G + YI+KP + + I+ Sbjct: 62 VLKTIRNKGI--DTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRR 118 >gi|170721093|ref|YP_001748781.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169759096|gb|ACA72412.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 246 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L + ++ +G +G + + D+I++DI + GL Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA + D + G + Y++KP S + I + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123 >gi|290769939|gb|ADD61708.1| putative protein [uncultured organism] Length = 221 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 78/123 (63%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59 K++++VEDNELN ++ + ++E +G++ +G+EA++ Q + D+I+MDIQ+ + Sbjct: 96 KRILLVEDNELNQEIAQTILEDAGFMVETANDGVEAVKKMEQAVPGQYDLILMDIQMPVM 155 Query: 60 SGLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +G E KQI+ ++ E +P++A+TA A + D E+ + G Y++KP+S + TI Sbjct: 156 NGYEAAKQIRSLKNRETASVPIVAMTANAFEEDREKSYEAGMNGYLAKPVSAEALINTID 215 Query: 118 KYI 120 K + Sbjct: 216 KIM 218 Score = 64.0 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 51 IMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110 I+D + +++G+E ++I+ P+I +TA+ EE ++ G A+ KP+ +S Sbjct: 12 IIDWLMPDMNGIETVRRIRRVIGDSS-PIIILTAYDWSDIEEEAKEAGVTAFCEKPLFMS 70 Query: 111 IFMETI 116 E + Sbjct: 71 QLRELL 76 >gi|298292393|ref|YP_003694332.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gi|296928904|gb|ADH89713.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 310 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%) Query: 1 ML----KK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54 M+ ++ V++V+D+ + L D +E +G L G AL L + PDVI+MD Sbjct: 1 MMHSVERRDIVLVVDDSPETLSLLTDALEAAGATVLVAVEGANALALIERITPDVILMDA 60 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + + G E +++K + + +PVI +T + + + G Y++KPIS + Sbjct: 61 VMPGMDGFETCRRLKRNKSVAHVPVIFMTGLSETEQIVKGLEAGGVDYVTKPISPDELIA 120 Query: 115 TIKKYIGEA 123 I+ ++ A Sbjct: 121 RIRVHLANA 129 >gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 240 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + + + SGY +G EA E+ D+I++DI L ++ G Sbjct: 19 KLLVVEDEKELLDSIAEGLRLSGYAVDTASDGEEAQEMCYVENYDLIVLDINLPKMDGFT 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E+ +L VI +TA D + G Y+ KP I+ + Sbjct: 79 VLQKIREEDKLVN--VIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRR 135 >gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ + ++ GY Q NG +AL + R+ +PD++++DI L E +G Sbjct: 1 MANILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRETQPDLVLLDIMLPEKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K+I+E S PVI +TA G + YI KP + ++ + Sbjct: 61 WTILKEIRERS---TCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 598 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L ++ GY + +G AL+ PD+I++DI + +I G + Sbjct: 14 ILIVDDTPGNLHLLSRILSKKGYKVREAIDGKTALQEVNNKLPDLILLDIMMPDIDGYAV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+K + E+P+I ++A D+ + + G YISKP + +K + Sbjct: 74 CNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIRVKNQL 129 >gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 227 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + + ++E Y +G +AL A D+I++D+ + + SG+E Sbjct: 2 RILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPYDLILLDVMMPKKSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + PV+ +TA + D+ + G + Y++KP + + +K + Sbjct: 62 VVRELRSNGI--HTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRR 118 >gi|298490636|ref|YP_003720813.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] gi|298232554|gb|ADI63690.1| response regulator receiver modulated diguanylate cyclase ['Nostoc azollae' 0708] Length = 317 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +LN+++ +++ GY NG +AL+ R +PD+I++D+ + E+ GLE+ Sbjct: 11 ILVVDDVKLNLQIVAKILDNVGYECSFASNGYQALKRVRSARPDLILLDLMMPEMDGLEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+ + EL EIP+I ++A + + + G Y++KP + + ++ ++ Sbjct: 71 CEKIQANPELSEIPIIFISASQEQEHLLQAFQKGAVDYVAKPFHSAELLARVRMHL 126 >gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory protein (C-terminal) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 224 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D E L + +E G+ NGME L ++ PD II+D+ L I G++ Sbjct: 2 KILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLMLPGIGGMD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+IKE + +IP++ VTA + D + G + YI KP ++ + ++ Sbjct: 62 LCKRIKE--KYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRR 118 >gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158] gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158] Length = 286 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + T +G + L L Q D +I+D+ L + GL Sbjct: 52 KRILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLMLPGVDGL 111 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 112 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 169 >gi|75906872|ref|YP_321168.1| response regulator receiver signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700597|gb|ABA20273.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Anabaena variabilis ATCC 29413] Length = 387 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 67/116 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED+ + DL+E G+ L+ NG+ ++LA++ PD+II D+ + E+ G Sbjct: 1 MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEEIPDLIICDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E+ K +++ E IP+I +TA + K D + + G + YI KP + + + I Sbjct: 61 YEVLKVLRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIA 116 >gi|84623104|ref|YP_450476.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367044|dbj|BAE68202.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 229 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++VED+ + + + G+ +G A++L RQ PD++++D+ L ++SG+ Sbjct: 4 KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I+ + PVI VTA + ++ + G + Y+ KP S + + + Sbjct: 64 EVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] Length = 232 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEI 59 +KK++I +DN+ + + G+ + +G EAL+ +H+ V+++D+ + EI Sbjct: 1 MKKMLIADDNKQITTILSGYAKKEGFEPVVALDGAEALDKYLQYEHEIAVVLLDVMMPEI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++++++S +P+I +TA D+ G + Y+ KP S M ++ Sbjct: 61 DGFEVCRRLRKESM---VPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED +L RD E G+ A +G E A D+II+D+ L G Sbjct: 1 MKRILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNLPGADG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I+ ++P++ V+A + D+ R G + +++KP S + + K ++ Sbjct: 61 LEVCRSIRAQL---DVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLS 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium intracellulare ATCC 13950] Length = 226 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++++D ++ R + GY + +G AL A +HKPDV+I+D+ L +ISG Sbjct: 1 MTRVLVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGLPDISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++ PVI ++A D+ G + Y++KP + F+ ++ + Sbjct: 61 IDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 245 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M + K+++V+D++ + + +E GY + NG+EAL++ + ++I+DI + + Sbjct: 11 MAQPKILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGM 70 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL T +I+E + IP+I ++A + D+ G + Y+SKP + +K Sbjct: 71 DGLSATMKIRES---KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQ 127 Query: 120 IGE 122 + Sbjct: 128 LRR 130 >gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2] gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2] Length = 226 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E + R E G+ + +GM+A+E +Q + D+IIMDI + + G Sbjct: 1 MSKLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAEYDLIIMDIMMPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+I++D + PVI ++A + D + G + Y+ KP S M + + Sbjct: 61 FSAVKEIRKDVQT---PVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|303248480|ref|ZP_07334738.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490100|gb|EFL50020.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 667 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED +N L+ G+ ++ +G +ALE+ + DV+++DIQ+ + GL Sbjct: 544 RRILLVEDERINRMAVGLLLRHQGHTVIEAASGQDALEIFGREPFDVVLLDIQMPGMDGL 603 Query: 63 EITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E +++ P++A+TA AM GD ER + G + Y++KP+ S + + Sbjct: 604 ETLALLRDTTIYGPRSATPIVALTAHAMAGDRERFLEAGMDDYLAKPVEASALAAVLARL 663 Query: 120 IGE 122 Sbjct: 664 TAR 666 >gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 950 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 7/123 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N KL +++ GY NG EA+ + I+MD Q+ + G E Sbjct: 687 RILVAEDNVVNQKLAVRMLDRLGYQPDIVSNGQEAVAAFERGLYAAIVMDCQMPTMDGYE 746 Query: 64 ITKQIKEDSELQ-------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T++I+E + IP+IA+TA AM GD ER + G + Y+SKP+ + Sbjct: 747 ATRRIREQEQKPAASGTRAHIPIIALTANAMPGDRERCKAAGMDDYLSKPVKTDDLGRLL 806 Query: 117 KKY 119 +++ Sbjct: 807 QRW 809 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 ++++IV+DNE N + L+ G Q R+ EA+ + Q D ++D+ + Sbjct: 528 RRILIVDDNESNRTILHHLVSGWGMQDGQARHADEAILMLEQAAAQGRPYDAAVLDMLMP 587 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GL++ ++I+ + + +I +T+ G ER R+ G AY++KP+ ++ Sbjct: 588 GKDGLQLAQEIRAHPQGAGVRLIVLTSLIQPGHAERARRAGFTAYLTKPVRHDQLQGCLR 647 Query: 118 KYIG 121 G Sbjct: 648 VVFG 651 >gi|289640898|ref|ZP_06473068.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289509213|gb|EFD30142.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 267 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ ++ R + GY + +G AL +PD+I++D+ L ++ G Sbjct: 1 MTRVLIVDDDTQILRALRITLHARGYEVMTATSGRHALAATTSGRPDIILLDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ PVI ++ D+ G + Y++KP + + ++ Sbjct: 61 AEVIHALRS---WTTTPVIVLSGRGGSTDKVGALDAGADDYVTKPFRVDELLARLRAVAR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 225 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VED L + ++ + +G E + +A DV+I+DI L Sbjct: 1 MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI K ++E+ PV+ +TA + + G + Y+ KP L + ++ I Sbjct: 61 GWEILKSMRENGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALI 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED E ++ + +E GY + + G EA+E D+I++D+ L IS Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ + + IP+I +TA D+ G YI+KP + + I+ + Sbjct: 61 GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|21241531|ref|NP_641113.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106880|gb|AAM35649.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 238 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ G E L L +++++DI L + G Sbjct: 11 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 71 EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 228 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D K R + +GY + +G L+ R PD++I+D+ L ++ G Sbjct: 1 MSRILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI +++D +IP+I ++ A + D+ G Y++KP ++ M ++ + Sbjct: 61 QEIISAVRQD---CDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLR 117 >gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435] gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + + + Y G L+ A + D+II+D+ L I+G Sbjct: 1 MTNILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPNING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++++++ Q P+I +TA + D+ G + YI KP + I+ + Sbjct: 61 LEICRRVRQE---QSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G E LE + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 >gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126] Length = 637 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 75/126 (59%), Gaps = 7/126 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEI 59 ++++VEDN +N + +++E+ GY+ NG+EALEL + + I+MD Q+ E+ Sbjct: 510 RILLVEDNAINQIVATNVLESEGYVVDVANNGVEALELLKSSKLKAHYSAIVMDCQMPEM 569 Query: 60 SGLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G E TK I+ + +P+IA+TA AM+GD++ K G + +++KPI + T+ Sbjct: 570 DGFEATKLIRYGAAGEVYKRVPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTL 629 Query: 117 KKYIGE 122 + ++ + Sbjct: 630 QHWLNK 635 Score = 42.4 bits (100), Expect = 0.024, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 48/124 (38%), Gaps = 16/124 (12%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--------KPDVIIMDIQLQ 57 +I++DN + + ++ G + L + EA+ L + DV+ ++ + Sbjct: 342 LIIDDNASTRRAMQSQLKLWGVLTLTASSIEEAISLYLKDSEQEIPAIPIDVVFLEKAEE 401 Query: 58 EISGLEITKQ----IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 E E ++ + ++ + ++ +T + + + KP++ S + Sbjct: 402 E----EFSQHFGQILLDNHRTKHTRLVLMTQLSDMESSVVYGGVDVDESLPKPLTSSDLI 457 Query: 114 ETIK 117 ++ Sbjct: 458 RIVE 461 >gi|254411539|ref|ZP_05025316.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182040|gb|EDX77027.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420] Length = 505 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ N++ ++ ++GY + +G ALE R + PD+I++D+++Q++ G + Sbjct: 8 ILIVDDHPDNLRSLAAILISAGYKVRKAISGKMALETIRSYPPDLILLDVKMQQMDGYTV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K ++ Q IPVI ++A D+ + G YI KP + +K + Sbjct: 68 CSTLKANAATQRIPVIFLSALDDVEDKVKAFNVGGSDYIVKPFQAQEVLIRVKNNL 123 >gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium abscessus ATCC 19977] gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium abscessus] Length = 227 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D + GY NG++A+ R++ PD++++D+ L + GL Sbjct: 5 RRILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHCRENPPDLMVLDVMLPGLDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +Q++ + IPV+ +TA + D G + Y+ KP S+ + + + + Sbjct: 65 EVCRQVQAHAP---IPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRR 121 >gi|144897465|emb|CAM74329.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Magnetospirillum gryphiswaldense MSR-1] Length = 382 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLE 63 +++V+D N+K+ L++ Y G +AL +A + +PD+I++DI + ++ G E Sbjct: 9 ILVVDDTPDNLKVMSGLLKDL-YRVKIANGGEKALAIAVSETQPDLILLDIMMPDMDGHE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K D ++IPVI +TA + DEE G YI+KPIS I M + ++ Sbjct: 68 VCRRLKSDERTRDIPVIFLTAKSEVEDEEIGLSLGAVDYITKPISPPIVMARVAAHL 124 >gi|332826438|gb|EGJ99267.1| hypothetical protein HMPREF9455_00300 [Dysgonomonas gadei ATCC BAA-286] Length = 1371 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+DNE + L + Y + +G E L + P++I+ D+ + ++ G E Sbjct: 1124 LIVDDNEDFCEFITSLFIDN-YNIVTANDGEEGLRIVLDQLPEIILCDVMMPKMDGYEFC 1182 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D IP+I +TA + + + + G + YI+KP ++ + I K I Sbjct: 1183 RQVKGDIRTSHIPIILLTAKSSEENRYSGIEAGADDYIAKPFNIDMLTLKIAKII 1237 >gi|329957698|ref|ZP_08298173.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328522575|gb|EGF49684.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 1347 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDNE + + + + ++ NG +ALEL + + D+I+ D+ + + G++ Sbjct: 1100 TILIVEDNEELRQYLSNGLSVQ-FNLIEAENGQKALELLKDNDVDLILSDVMMPIMDGVK 1158 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K IK++ IPV ++A + + + G + YI KP S+ + + I + Sbjct: 1159 LCKLIKQNLRTCHIPVYLLSAKVDIKYQLKGLQVGADDYIPKPFSMEVLVAKILNMLR 1216 >gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] Length = 226 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I++D+ L +E GY A+ +G ++ A D +I+D+ L +++ Sbjct: 1 MNGNILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLPKLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+E E PV+ +TA D + G + Y+ KP + + ++ + Sbjct: 61 GFEVLKSIREHLET---PVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1] gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1] Length = 225 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 65 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118 >gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] Length = 216 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED + L + + + Y Q +G L A ++I++D+ L I+G+E+ Sbjct: 2 ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDYELILLDLMLPRINGIEV 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ ++ P+I +TA D+ + G + Y++KP ++ + I + Sbjct: 62 CRQLR---LKKQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 116 >gi|163742633|ref|ZP_02150019.1| response regulator [Phaeobacter gallaeciensis 2.10] gi|161384218|gb|EDQ08601.1| response regulator [Phaeobacter gallaeciensis 2.10] Length = 422 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ L ++ ++ G+ ++ +G A+E+ PD+I+ D + ++GL Sbjct: 18 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 77 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119 E + + S+ I +T+ + K + + G + +++KP+S I ++ Sbjct: 78 EFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGERI 137 Query: 120 IG 121 + Sbjct: 138 LR 139 >gi|15896015|ref|NP_349364.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025797|gb|AAK80704.1|AE007774_1 Response regulator (CheY receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510169|gb|ADZ21805.1| Response regulator (CheY receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+V+D E ++ + +E G+ NG +A+ +R+ P++II+D+ L ++G E+ Sbjct: 11 IMVVDDEEHIVEFLKMGLEAEGFTVYTAFNGNDAVIYSRKLNPNLIILDVMLPYMNGYEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 IK+ IP+I +TA D+ G + Y+ KP S + I + + Sbjct: 71 CSLIKK---ASNIPIIMLTAKDEIDDKVLGLNLGADDYMIKPFSFKELLARINARLRNS 126 >gi|332525017|ref|ZP_08401198.1| Signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] gi|332108307|gb|EGJ09531.1| Signal transduction histidine kinase-like protein [Rubrivivax benzoatilyticus JA2] Length = 331 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 68/118 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN +N +L +L+ +G +G+EAL + + D ++MD+Q+ + GLE Sbjct: 66 RVLLAEDNPVNQELTLELLRQAGASTALAGDGLEALAWLARERFDAVLMDVQMPVLDGLE 125 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++++ L+ +PVIA+TA AM D E G +++KP + +E ++ + G Sbjct: 126 ATRRLRRLPGLEALPVIAMTAHAMASDREACLAAGMNDHLAKPFEPDVLIERLRHWTG 183 >gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 228 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED L + +E +GY + +G+ L L + H D++I DI L ++ G Sbjct: 1 MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + IP++ +TA D+ G + Y+ KP IK + Sbjct: 61 FELAKEIRRTN--PNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|295696488|ref|YP_003589726.1| response regulator receiver protein [Bacillus tusciae DSM 2912] gi|295412090|gb|ADG06582.1| response regulator receiver protein [Bacillus tusciae DSM 2912] Length = 168 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV++V+D+E +L + + GY NG ALEL + +PD++I+D+ L +++G+ Sbjct: 5 QKVLVVDDDEELRELVELYLRSHGYRTASAENGRRALELLCREQPDLLILDVLLPDVNGV 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I+ S ++PV+ ++ GD + G + Y++KP + + +K + Sbjct: 65 ELCRMIRRSS---DVPVLFLSWKGTPGDIVAGLEEGGDDYLTKPFDPMVLVARVKARLRR 121 >gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 240 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%) Query: 1 ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+ K+++ VED + R +E G+ G +AL+ + D II+D+ L + Sbjct: 1 MMNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPD 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +G E+ KQ+++ + P++ +TA + D + G + Y +KP S + IK Sbjct: 61 QNGFEVCKQLRQKYQT---PLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKA 117 Query: 119 YIGE 122 Sbjct: 118 IWRR 121 >gi|257884194|ref|ZP_05663847.1| two component transcriptional regulator [Enterococcus faecium 1,231,501] gi|257820032|gb|EEV47180.1| two component transcriptional regulator [Enterococcus faecium 1,231,501] Length = 222 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN KL +E +GY G EA ++ Q + D+ ++DI L EI G E Sbjct: 6 KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++E ++PVI +TA D + G E YI+KP L + ++ + Sbjct: 66 VFAYMRE----YDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 120 >gi|171912783|ref|ZP_02928253.1| two component, sigma54 specific, transcriptional regulator, Fis family protein [Verrucomicrobium spinosum DSM 4136] Length = 488 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++I +D ++ L +++E GY L NG +AL+LA + KPD+I++D+ + G Sbjct: 4 QRILIADDTPASLSLISNVLEPRGYEILAVSNGRDALQLAPKAKPDLILLDVMMPGQDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K E + IPVI VT+ R + G YI KP + + ++ Sbjct: 64 MVCRELKAADETRNIPVIFVTSRNEIESVVRGFQVGAVDYIYKPFQAQEVVTRVATHL 121 >gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 228 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRSRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|83646635|ref|YP_435070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634678|gb|ABC30645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 659 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 72/123 (58%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVEDN++N K+ ++ G NG EAL+ R K D+I MD Q+ + G + Sbjct: 519 RVLIVEDNQVNQKVTCGILNKLGIETENANNGEEALQKVRGGKYDLIFMDCQMPVMDGYQ 578 Query: 64 ITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I++ ++ P++A+TA A++G + RK G + Y+SKPI +E ++ ++ Sbjct: 579 ATAKIRQMETRAGVKPTPIVALTANALEGAADACRKAGMDDYLSKPIKKQQLVECLQTWL 638 Query: 121 GEA 123 G++ Sbjct: 639 GDS 641 >gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 226 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PVI +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALRTAHQS---PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|86144202|ref|ZP_01062538.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85829332|gb|EAQ47798.1| two-component system, transcriptional regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 238 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + Y +NGME E ++ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGTVLKDYLSMNDYDVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IG 121 + K+I+E +E ++P+I +TA AMK D + K G + Y++KP + + IK + Sbjct: 66 TLAKEIREKNE--DVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMLR 123 Query: 122 EA 123 +A Sbjct: 124 KA 125 >gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 231 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D + L ++ Y+ + +A+ D+ I+DI L +++ Sbjct: 1 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I++ P+I +TA + D+ G + Y++KP + +K + Sbjct: 61 GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D +L + +G+ +G EA+E+ + +PD+I++D+ L +I G + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+++ PV+ +TA D+ G + Y++KP SL + I+ + Sbjct: 74 TRRIRQEGIA--TPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 129 >gi|172038233|ref|YP_001804734.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699687|gb|ACB52668.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 384 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ L ++ GY + G E L A++ P +II D + I+G Sbjct: 1 MVQILLIDDDRTIRSLLERTLKRQGYDVVCVDKGAEGLIKAKELHPAMIICDWVMPGITG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q+K +L I +T+ D + G + ++ KPI ++ F+ I+ + Sbjct: 61 LEVCRQVKRIPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGLR 120 >gi|144901020|emb|CAM77884.1| Alkaline phosphatase synthesis transcriptional regulatory protein, fragment [Magnetospirillum gryphiswaldense MSR-1] Length = 123 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 65/121 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + V++V+D + L++ GY R+G AL +H+P ++++D+ + + Sbjct: 1 MARSVLVVDDEPNIVLSLEFLLKQVGYDVHVARDGDAALAAIAEHRPGLVLLDVMMPKRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + ++ + + +I +I +TA + + E+ G + Y++KP S +E ++ ++ Sbjct: 61 GYDVCQTVRANPDWADIRIIMLTAKGREVEREKGMALGADEYVTKPFSTRDVVEKVRSFL 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33] Length = 651 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+++ +K+ + T YI ++G + D+II+DI L + G+ Sbjct: 2 KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+ + +P++ +TA + + G + Y+ KP + I+ + Sbjct: 62 LCKRFRAQGYT--VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR 118 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVMI++D++ ++ L++ G+ + + + + PD +++D+ + +I+G E Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ D Q +PV+ ++ + + G + Y+ KP+ I + Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 Score = 38.6 bits (90), Expect = 0.33, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 24/134 (17%) Query: 10 DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--------PDVIIMDIQLQEI-S 60 DNE N + + G A + PDVI+M +L + S Sbjct: 391 DNEFNQSIVAVA-ASRGIRIQIAPTPDIAPAMLTNEPVLDGFGEDPDVILM--RLPSMPS 447 Query: 61 GLEITKQ--------IKED----SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108 E+ +Q K ++P++ + D + G + ++ P Sbjct: 448 RAEVIEQPNSELSNIWKTLQTFAERYPKLPIVVIGDRGEMSDRLEAMRRGGKLFLVTPTP 507 Query: 109 LSIFMETIKKYIGE 122 ++T+ + + Sbjct: 508 PEQIVDTVVNLLRD 521 >gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 236 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 71 GLQVLQRLRADNNT--TPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|319782570|ref|YP_004142046.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168458|gb|ADV11996.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 242 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + +++ G+ + E + + D+I++D+ L + SGL+ Sbjct: 6 HILVVDDDREIRTLLQRYLDSQGFRVTAAADRRECEQRLGSGQFDLIVLDVMLPDGSGLD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + ++ P+I +TA D + G + Y+ KP + + I+ + + Sbjct: 66 ICRGLR--DRKPHTPIILLTALKEDVDRIIGLELGADDYLGKPFNPRELIARIRAVLRRS 123 >gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D ++L + SG+ G +AL A + PD++++D+ L + G Sbjct: 9 ARVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGF 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E +L +PV+ +TA D G + Y++KP SL + ++ + Sbjct: 69 SVARRLREGGDL--VPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRR 126 >gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 226 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 61 GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|157964306|ref|YP_001499130.1| response regulator PleD [Rickettsia massiliae MTU5] gi|157844082|gb|ABV84583.1| Regulatory components of sensory transduction system [Rickettsia massiliae MTU5] Length = 456 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D+I++D+ + EI G Sbjct: 7 MTTILVVDDIEPNIKLLTAKLLQEYYTVLTANSGKEALAILKKEKIDIILLDVMMPEIDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 67 FEVCKTIKTDPATTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 124 Score = 63.6 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 158 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 216 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI S + I+ + Sbjct: 217 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLKR 276 >gi|117925904|ref|YP_866521.1| histidine kinase [Magnetococcus sp. MC-1] gi|117609660|gb|ABK45115.1| histidine kinase [Magnetococcus sp. MC-1] Length = 667 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+E N L + + + NG EAL L ++ D+I MDIQ+ + GL Sbjct: 545 KRILLVDDSEDNRSLIQAYLRRYPHALTTAENGKEALTLVKEKHFDIIFMDIQMPVMDGL 604 Query: 63 EITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+ + +P+IA+TA M DE++ GC +++KPI + ++ I Sbjct: 605 SATRAIRAWELTQQSNRNVPIIALTAHVMLEDEKKSIDAGCNFHLTKPIKKARLIDIIDN 664 Query: 119 Y 119 + Sbjct: 665 H 665 >gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 240 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 3/115 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + K+ +E GY +G AL+ AR+ +PDV+++D+ L + G+E Sbjct: 14 RVLVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLDGVE 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++++ + VI +TA + D+ G + Y++KP S + + Sbjct: 74 VCRRLRA---FSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAA 125 >gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 1407 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +N K+ ++ GY NG EA+ D++IMD+Q+ E+ GLE Sbjct: 1288 RLLLAEDTSINQKVVIGILGKLGYHIDVVVNGAEAVRALETTPYDLVIMDLQMPEMDGLE 1347 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ IPVIA+TA M+GD E G Y+SKPI +I +ETI+K++ Sbjct: 1348 ATRIIRSPDSAVLNHRIPVIALTAHTMEGDRELCMHAGMTDYVSKPIDSAILVETIRKWL 1407 Score = 96.7 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +++IV+DN N + R + G + + G + + ++ + ++D+Q+ + Sbjct: 1134 RILIVDDNATNRTVLRRQFLSWGAVVTELSGGAQVVAELKRAHESGEPYRLALIDMQMPD 1193 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + + IK+D +L ++ +++ K EE +++ GC A +SKPI S +T Sbjct: 1194 MDGATLCRSIKDDEKLAPTVLVMMSSLGSKCSEEDLKRMGCSACLSKPILQSDLFDTFAA 1253 Query: 119 YI 120 I Sbjct: 1254 II 1255 >gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 226 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +KK +M+VED E +E GY + ++G EALE+ ++ +I++D L Sbjct: 1 MKKAVIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPIY 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + ++I++ S +P+I +TA + D G + YI+KP + + I+ Sbjct: 61 DGLTVLRRIRQSS---NVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20] Length = 248 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ L + G+ G+ A+ A++ PDVI++DI L + GLE Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 78 VMRRVR--GHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 >gi|319654445|ref|ZP_08008532.1| hypothetical protein HMPREF1013_05152 [Bacillus sp. 2_A_57_CT2] gi|317393944|gb|EFV74695.1| hypothetical protein HMPREF1013_05152 [Bacillus sp. 2_A_57_CT2] Length = 160 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D +KL + ++ + A++ +G EAL + +++K D I++DI + E+ Sbjct: 11 MEKTILVVDDERDIVKLITESLKFEQFNAIRAYSGKEALSILKENKIDFIVLDIMMPEMD 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+++ IP++ ++A D+ + G + Y++KP S+ IK + Sbjct: 71 GLEVCRKIRKE---YNIPILLLSARNRDMDKIIGLEIGADDYMTKPFSIQELTSRIKAHF 127 Query: 121 GE 122 + Sbjct: 128 RK 129 >gi|303328169|ref|ZP_07358608.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3] gi|302861995|gb|EFL84930.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3] Length = 238 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++EDNE + +E GY R+G L +A + + D I++D+ L + Sbjct: 1 MPVSLLLIEDNEDILANLYAYLEPLGYELDCARHGRTGLSMALEGRFDCIVLDVMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + + ++E +PV+ +TA D R + G + Y+ KP +L I+ + Sbjct: 61 GVSLCRNLRE-EHHSAVPVLMLTARDTVADRVRGLEAGADDYLVKPFALKELEARIRALL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 651 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED++++ R L+E G++ + +G +AL+L + D++ MDIQ+ + G+E Sbjct: 513 RILLAEDDQISAIACRHLLEHMGHVVVTAADGRQALDLFAKENFDLVFMDIQMPTLDGVE 572 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++++ + P+IA+TA+AM GD +R G YI+KP+ + ETI + + Sbjct: 573 ATREMRNRDAYADKADTPIIAMTAYAMDGDAQRFLDAGMNGYIAKPVEKATLRETIARVM 632 Query: 121 GEA 123 EA Sbjct: 633 REA 635 >gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 232 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+E + +E Y +G+EAL++ + D+I++DI ++ I G+ Sbjct: 4 KKILLVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMM-NNDFDLIVLDIMMEGIDGM 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + I+E ++P++ V+A ++ D+ + G + YI+KP SL I ++ Sbjct: 63 ELCRLIRERV---DVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLRR 119 >gi|293608084|ref|ZP_06690387.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828657|gb|EFF87019.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122199|gb|ADY81722.1| two component transcriptional regulator, winged helix family [Acinetobacter calcoaceticus PHEA-2] Length = 243 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ G ++ NG +A+E+ D++I+DI++ E+SG E+ Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHAAQPIDLVILDIKMPELSGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA + D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQKAAT---PVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 65 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118 >gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 233 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L ++ + + G LE RQ KPD++I+D+ L I G Sbjct: 1 MPNILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + ++++S Q +P++ +TA D+ + G + Y++KP + + ++ + Sbjct: 61 LQVCRLLRQES--QSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 233 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60 + +++IV+D++ L D +E G+ + +G EALE + + ++I+DI + ++ Sbjct: 1 MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ + P+I V+A + D + G + YI KP + + +K ++ Sbjct: 61 GLELCRRVRDQLKA---PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 227 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 66/119 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +++ ++++GY + ++G EA++ A+ +PD+I++DI + +G++ Sbjct: 9 KILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKAKVFRPDLIMLDIMMPNKNGID 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ E ++ V+ +TA + E G + YI+KPI + + I Sbjct: 69 TCREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRR 127 >gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED E ++ G+ G +AL+ + D++++D+ L +SG Sbjct: 1 MTRVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLPGLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ +PVI V+A + D+ + G + Y++KP S + IK + Sbjct: 61 TEVCRALRTRG---NVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + L D ++ G+ L +G +EL++Q PD+II+DI + ++ G Sbjct: 1 MSKILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQE-PDLIILDIMMPKMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I++D PVI ++A + D+ + G + Y++KP L M I+ + Sbjct: 60 FEVCQAIRDDVL---CPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] Length = 238 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 60/135 (44%), Gaps = 14/135 (10%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------------HKPD 48 M ++++VED+E + ++ +E G+ NG +AL ++ Sbjct: 1 MRARLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFA 60 Query: 49 VIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108 ++++D+ L + GL++ + ++ S P++ V+A + D + G + Y+ KP Sbjct: 61 LVVLDLMLPGLGGLDVCRALRAASNF--TPILVVSARDSETDRVLGLEVGADDYLVKPFG 118 Query: 109 LSIFMETIKKYIGEA 123 + + + + + Sbjct: 119 MRELVARCRALLRRS 133 >gi|172039491|ref|YP_001805992.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700945|gb|ACB53926.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 335 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 72/116 (62%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++++TSGY +G +ALE A+ +PD+I++D+ + E++GLE+ Sbjct: 14 ILVVDDIRKNLQLLIEILDTSGYGTTFAISGKQALERAKVTEPDLILLDLMMPEMNGLEV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 KQ+K++++ ++IPVI +TA + G Y++KP + IK ++ Sbjct: 74 CKQLKKNAKTEQIPVIFLTAATETNYLIEAFESGAVDYVTKPFKTPELLARIKTHL 129 >gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 240 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+I++D +L +K R E G+ +G EAL + D II+D+ L +I G+ Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I++ S ++ +I +TA D+ + G + Y++KP + + ++ I Sbjct: 78 LCNRIRQQS---DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 >gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1326 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ EDNE N ++ L+ G +G +AL + D ++MD+Q+ E+ GL Sbjct: 981 VLLAEDNEFNQQVATGLLNEVGVNVEIAGDGKQALARLAERTYDAVLMDMQMPEMDGLAA 1040 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ + +++P+IA+TA AM+ D+ER G +I+KPI T+ K+I Sbjct: 1041 TREIRKQARFKDLPIIAMTANAMEQDKERCIAAGMNDHIAKPIDPDHLFNTLLKWI 1096 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 ++V++V+DNE K+ +++ + + G EA++ R + D+ +D ++ Sbjct: 830 RRVLVVDDNESARKVLDEMLSSMTFQVTTANGGHEAIDQVRQAAQAESPYDIAFLDWRMP 889 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E K I+ + ++ VTA+ + + G E + KP+ S+ +TI Sbjct: 890 GMDGIETAKAIRGLGLERSPRMVMVTAYGREEVMRGAAEAGIEDVLIKPVGASLLFDTIM 949 Query: 118 KYIG 121 +G Sbjct: 950 AVLG 953 >gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 2095 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K ++V+D+ N+ ++E G L G EA+ L + +++MDI + ++ G Sbjct: 1975 KTALLVDDDARNIFALSSVLERRGMKVLTATTGREAVTLVESNPEIAIVLMDIMMPQMDG 2034 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I+E+ +P+IA+TA AMKGD E+ + G Y++KP++ + I+ ++ Sbjct: 2035 YQTIGVIRENPAFLRLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTDQLLLAIRMWLH 2094 Query: 122 E 122 Sbjct: 2095 R 2095 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED+ ++ DL G+ L G EALELA+Q++P + +D+ L ++ G + Sbjct: 1710 LIVEDDPHYARVLVDLARDKGFKVLVAARGAEALELAKQYQPRAVSLDVFLPDMLGWTVL 1769 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKP 106 Q+K + + IPV +T + D + G ++++KP Sbjct: 1770 SQLKHNPLTRHIPVQIIT---LDEDRQHALARGALSFVNKP 1807 Score = 97.1 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVEDNE R+L+ + T G AL R+ D +++D++L ++SG Sbjct: 1829 KRLLIVEDNEAEQLSIRELLHHDDIEIVTTDTGAGALSTLREAPCDCVVLDLRLPDMSGF 1888 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ QI+ D L IPV+ T + +E+ + + K + S ++ Sbjct: 1889 EVLDQIRHDEALSNIPVVVFTGRELSAEEDAELHTMARSIVVKGVESPERLLD 1941 >gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1236 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 74/116 (63%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL++ D ++MDIQ+ + GL Sbjct: 1112 VLLVEDNFINQQVASELLKSAGYEVVIADNGQVALDVIDSKPFDAVLMDIQMPVMDGLTA 1171 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T ++++ Q++P+IA+TA AM GD+E+ G A+I+KPI L+ ET+ +I Sbjct: 1172 TAELRKRYSKQQMPIIAMTAHAMSGDKEKSLAAGMNAHITKPIVLTELFETLSHWI 1227 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 4/115 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+DN ++++ L+ + +G +AL++ R+ D++++D + E++G ++ Sbjct: 970 LVVDDNPSALQIYSTLMTDFSFGVNTADSGQKALDILRKKPVDLLLLDWMMPEMNGCDVI 1029 Query: 66 KQIKE---DSELQEIPVIAV-TAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 K I E D + + P+I + TA+A + + ++K A + KP S + I Sbjct: 1030 KAIDEMVADGSIAKRPIIILMTAYAAEPLDHELQKNSVYAVLQKPFKASALFDEI 1084 >gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 61 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|189910583|ref|YP_001962138.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775259|gb|ABZ93560.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] Length = 812 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++I +D+ +N+K+ + ++ GY+AL NG + LE+ + PD+I++D+Q+ +I G+ Sbjct: 690 AKILIADDDSINLKVSKMFLKKLGYVALIAENGEKTLEVVEKENPDLILLDVQMPDIDGI 749 Query: 63 EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++TKQI+++ L+ P +IA+TA M+ ++E G + +++KP+ + + IKK+ Sbjct: 750 QVTKQIRKNKNLKRQPIIIALTANVMEEEKENCLSSGMDDFMTKPLLMQDLVYMIKKW 807 >gi|153876951|ref|ZP_02004011.1| response regulator receiver protein [Beggiatoa sp. PS] gi|152066585|gb|EDN65989.1| response regulator receiver protein [Beggiatoa sp. PS] Length = 144 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D+ N++L ++ Y L G A+E+ KPD+I++D+ + +++G Sbjct: 1 MTTILIVDDSSENIELLMAVLNNIDYKFLTATTGKSAIEIVLSQKPDLILLDVVMPDMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +K + + IP+I +TA + DE + + G YI+KP +I +K ++ Sbjct: 61 YEVCTILKANLTTKRIPIIFITAKDDEDDESKGFEVGAVDYITKPFRPTIIQARVKTHL 119 >gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 224 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + ++ + + +G EALE DVII+D+ + +++G E Sbjct: 2 KILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVMMPKMNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ + E V+ +TA ++ + G + Y+ KP + I+ + Sbjct: 62 VVKNLRANKN--ETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR 118 >gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132] gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1314 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVEDN ++ ++ NG EA ++ ++ PD ++ D+ + E+ Sbjct: 1059 MDAHLLIVEDNADLRNYLEEIFGST-LKVSMATNGKEAWDMIQKDTPDAVLSDVMMPEMD 1117 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++K + +P++ +TA A E + G + YI KP + I + + Sbjct: 1118 GLELCSKVKNHPKFAHLPIVLITARAAAVHELEGIESGADDYIVKPFNPKILFSKVTALL 1177 >gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 838 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +N + ++E +GY +G E L L + D I+MDI++ +GLE Sbjct: 710 RILLAEDEAINRLAAQKMLEKAGYAVTPAGSGEEILRLLAERPFDCILMDIRMPGKNGLE 769 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T++I+ L IP+IAVTA+AM GD E+ G + Y+SKPI ++ ME +K+ + Sbjct: 770 VTREIRHSPRLGPMAAIPIIAVTAYAMSGDREKFLAAGMDGYVSKPIDIAHLMEELKRIM 829 >gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ ++ + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|223935713|ref|ZP_03627629.1| response regulator receiver protein [bacterium Ellin514] gi|223895721|gb|EEF62166.1| response regulator receiver protein [bacterium Ellin514] Length = 120 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D ++L R I + G+ + +G +A+E+A + PD++++D+ L + G Sbjct: 1 MAKILIVDDLPTEVQLMRSAIASLGHSVVVATDGEQAVEMAHRESPDLMLLDVVLPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++IK+D I VI +++ + D+ K G AYI KP S ++ +KK + Sbjct: 61 FQVCRKIKKDPNTSNIQVILISSKTQESDKFWGLKQGANAYIFKPFSPQELVDAVKKNLR 120 >gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + ++ GY ++ NG LE+A + + D+I++DI L EI+G Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++++ +IP+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1159 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56 + +++VED+ N+ ++E +G RNG EALE + + D+++MDI + Sbjct: 1034 RSILVVEDDVRNIFALSSVLEPTGAKVQIARNGREALEALERSQAGDAPQVDLVLMDIMM 1093 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G ++I++ E + +P+IA+TA AMK D+E+ G YI+KP+ + + + Sbjct: 1094 PEMDGFTAMREIRKRQEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1153 Query: 117 KKYIGE 122 + ++ + Sbjct: 1154 RVWMPK 1159 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 10/127 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED+ ++ DL G+ + T +G E L A + P +++D+ L + SGL Sbjct: 766 RTILVVEDDTRFARILYDLAHEMGFQCIVTHSGGEGLAAATDYMPSAVVLDMNLPDFSGL 825 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK---- 118 + Q+K + + IPV V+ + + G Y KP+ ++ +++ Sbjct: 826 GVLDQLKRNPATRHIPVHVVS---VADYSQEALGLGAMGYALKPVKRDELVQALQRMEAK 882 Query: 119 ---YIGE 122 + Sbjct: 883 FTQALRR 889 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 50/94 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED++ + R L+ + AL+L R+ D ++MD+ L ++SG Sbjct: 888 RRVLVVEDDDRQRESMRHLLANGDVEIVGAETAQRALQLLRESTFDCMVMDLNLPDLSGY 947 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 E+ +Q+ E+ PVI T ++ DEE+ + Sbjct: 948 ELLEQMAGQEEVAFPPVIVYTGRSLSRDEEQRLR 981 >gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 228 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRSRS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D+ +L ++ GY + +G EAL + ++I+D+ + ++GL Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMNGL 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K +++DS IP++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 62 EVVKTVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 123 A 123 A Sbjct: 119 A 119 >gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1160 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56 + +++VED+ N+ ++E +G RNG EALE + + D+++MDI + Sbjct: 1035 RSILVVEDDVRNIFALSSVLEPTGAKVQIARNGREALEALERSQSGDAPQVDLVLMDIMM 1094 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G ++I++ E + +P+IA+TA AMK D+E+ G YI+KP+ + + + Sbjct: 1095 PEMDGFTAMREIRKRQEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1154 Query: 117 KKYIGE 122 + ++ + Sbjct: 1155 RVWMPK 1160 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 10/127 (7%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED+ ++ DL G+ + T +G E L A + P +++D+ L + SGL Sbjct: 767 RTILVVEDDTRFARILYDLAHEMGFQCIVTHSGGEGLAAATDYMPSAVVLDMNLPDFSGL 826 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK---- 118 + Q+K + + IPV V+ + + G Y KP+ ++ +++ Sbjct: 827 GVLDQLKRNPATRHIPVHVVS---VADYSQEALGLGAMGYALKPVKRDELVQALQRMEAK 883 Query: 119 ---YIGE 122 + Sbjct: 884 FTQALRR 890 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 50/94 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED++ + R L+ + AL+L R+ D ++MD+ L ++SG Sbjct: 889 RRVLVVEDDDRQRESMRHLLANGDVEIVGAETAQRALQLLRESTFDCMVMDLNLPDLSGY 948 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 E+ +Q+ E+ PVI T ++ DEE+ + Sbjct: 949 ELLEQMAGQEEVAFPPVIVYTGRSLSRDEEQRLR 982 >gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 64/117 (54%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+V+D+E L R ++E +GY +G E L L KPD++++D+ + ++G ++ Sbjct: 1 MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVMMPGMNGFDVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E E + IP++ ++A D+ K G + Y+ KP S + I+ ++ Sbjct: 61 RRMRE--EGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRR 115 >gi|261879166|ref|ZP_06005593.1| response regulator PhoB [Prevotella bergensis DSM 17361] gi|270334265|gb|EFA45051.1| response regulator PhoB [Prevotella bergensis DSM 17361] Length = 231 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + ++ + +ET GY + + EALE+ D++++D+ + +SG + Sbjct: 10 ILVVDDEDDLCEILKFNLETEGYHVEKANSAEEALEM-DLPAFDLLLLDVMMGGMSGFAM 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++K + IP+I +TA + D G + YISKP S+ + ++ I Sbjct: 69 AQKLKANPATANIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRVRAVIRR 126 >gi|300022156|ref|YP_003754767.1| response regulator receiver protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523977|gb|ADJ22446.1| response regulator receiver protein [Hyphomicrobium denitrificans ATCC 51888] Length = 144 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 84/119 (70%), Positives = 103/119 (86%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVEDNELNMKLF DL+ GY +QTRNG EALELAR+H+PD+I+MDIQL E+SGLE+ Sbjct: 24 VLIVEDNELNMKLFNDLLAAHGYKTIQTRNGFEALELARKHRPDLILMDIQLPEVSGLEV 83 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 TK +K+D EL IPV+AVTAFAMKGDEERIR GGCEAY+SKPIS+ F+ET++K+IG + Sbjct: 84 TKWLKDDDELCRIPVVAVTAFAMKGDEERIRSGGCEAYVSKPISVMTFLETVRKFIGPS 142 >gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IVED E L+ G+ A +G AL + D++++D+ L +S Sbjct: 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMS 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 63 GTDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|88608688|ref|YP_506396.1| response regulator PleD [Neorickettsia sennetsu str. Miyayama] gi|88600857|gb|ABD46325.1| response regulator/GGDEF domain protein [Neorickettsia sennetsu str. Miyayama] Length = 456 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D N+K+ + Y + +G+ A+ELA+QH+PDVI++D+ + E+ Sbjct: 1 MTALILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQPDVILLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E +++K D IPVI VTA ++ G + ++ KP IK + Sbjct: 61 GFETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKDFTLFIRIKSLL 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 48.2 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 42 ARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGG 98 A DV+I++I L + L + IK + + IP++A+ + DE I + G Sbjct: 191 AEYASFDVLIVNISLSK-DLLRLCSAIKSHLKTRSIPIMAI--VDDEDDESLITEITELG 247 Query: 99 CEAYISKPISLSIFMETIKKYIGE 122 YI PI+ S F+ + + Sbjct: 248 INDYICVPINKSEFIARVTTQVKR 271 >gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833] Length = 1214 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K++I++D+ N+ ++E G + NG E +E R +++MDI + E+ G Sbjct: 1073 AKILIIDDDIRNVFALTSVLERHGATVVYAENGREGIEQLERNEDVALVLMDIMMPEMDG 1132 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I++ + ++P+IA+TA M GD E+ G Y+ KP+ + + ++ ++ ++ Sbjct: 1133 WATTSAIRKMPQFADLPIIALTAKVMHGDREKSIASGASDYVPKPVDVDLLLDRLRGWLA 1192 Query: 122 EA 123 ++ Sbjct: 1193 QS 1194 >gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+E +L R ++ GY+ + ++G EA L + + ++DI + G Sbjct: 1 MIHILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQHIHLAVVDIMMPHKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ + P+I +TA D+E+ G + Y++KP + IK + Sbjct: 61 YEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium kansasii ATCC 12478] Length = 227 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTNVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium 1_7_47FAA] Length = 243 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++ +D+ ++ R L+E+ GY ++ NG +A +A D+II+D+ + +G Sbjct: 17 RKILFADDDPEIREVVRILLESEGYQVVEAENGEQAASMADD-TFDLIILDVMMPGRNGF 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ P++ +TA D+ G + Y+SKP S + +K I Sbjct: 76 SACAEIRRRL---NTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRR 132 >gi|224537028|ref|ZP_03677567.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM 14838] gi|224521336|gb|EEF90441.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM 14838] Length = 1345 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 3 KKV-MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++ +IVEDN+ + + NG + +E A PD+I+ DI + ++G Sbjct: 1090 KRIMLIVEDNQDICNYIAESFSDD-FEVKTAANGEQGMEQALNSIPDIIVSDIMMPVMNG 1148 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + K +KED IP+I +TA D+E + G ++Y++KP S ++ I + Sbjct: 1149 IMMCKILKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1207 >gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 235 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMDI + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 >gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 224 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I+GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 62 VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|163737971|ref|ZP_02145387.1| response regulator receiver modulated serine phosphatase [Phaeobacter gallaeciensis BS107] gi|161388587|gb|EDQ12940.1| response regulator receiver modulated serine phosphatase [Phaeobacter gallaeciensis BS107] Length = 423 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ L ++ ++ G+ ++ +G A+E+ PD+I+ D + ++GL Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119 E + + S+ I +T+ + K + + G + +++KP+S I ++ Sbjct: 79 EFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGERI 138 Query: 120 IG 121 + Sbjct: 139 LR 140 >gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R] gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++L ++ G+ + +G EAL++AR+ +PD I+D+ + + G E Sbjct: 15 RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + PV+ +TA G + Y++KP SL + ++ + Sbjct: 75 LLTKLRSEGLDS--PVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 131 >gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5] gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5] Length = 238 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IV+D + L ++ + + + EA E + +PD+ +MD+ + EI Sbjct: 8 MREKILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVREEPDLALMDVMMPEID 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QI+E PVI +TA + D+ G + YI+KP + +K + Sbjct: 68 GFTLCRQIRERYHF---PVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQL 124 Query: 121 GE 122 Sbjct: 125 RR 126 >gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612] gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612] Length = 231 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D + ++ GY + +G EALE+ ++ +I+MDI + E+ G+ Sbjct: 3 ILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIVSENTIHLILMDIMMPEMDGIHA 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E IP+I ++A A D+ G + YI+KP + + +K + Sbjct: 63 TLKIRE---TANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRR 117 >gi|304309732|ref|YP_003809330.1| predicted histidine kinase [gamma proteobacterium HdN1] gi|301795465|emb|CBL43663.1| predicted histidine kinase [gamma proteobacterium HdN1] Length = 920 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+DNE N +L ++ + + NG A+++ + PD+I+MDI++ E+ G Sbjct: 708 RRILIVDDNENNRELLHKILLPFDFCLNEASNGQSAVQICQDWHPDLILMDIRMPEMDGH 767 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I++ ++P+I +TA + GD E+ + G Y+SKP + I K + Sbjct: 768 QAIREIRKIHSRDQLPIIVLTAGTLAGDVEKSTQEGANDYLSKPFKADDVLSRIGKQL 825 >gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 236 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M ++++V+D +L + +G+ +G+ A++L PD++++D+ L ++ Sbjct: 1 MSEARLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+T++++ PV+ +TA D+ G + Y++KP SL + I+ Sbjct: 61 DGFEVTRRLRSKDIHS--PVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAI 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 248 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A+ AR +PD +++D+ L ++ GL Sbjct: 22 RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGLS 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 82 VLGRLRR--EYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 139 >gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus C3-41] gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Lysinibacillus sphaericus C3-41] Length = 230 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + ++ ++ SGY +G EALEL ++ D+II+D+ L ++ G+E Sbjct: 2 KLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +QI+ +E ++ ++ ++A + D+ G Y+ KP I+ + + Sbjct: 62 VLEQIRVQNE--DVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRS 119 >gi|183220472|ref|YP_001838468.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167778894|gb|ABZ97192.1| Putative two-component response regulator; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 807 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 78/118 (66%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++I +D+ +N+K+ + ++ GY+AL NG + LE+ + PD+I++D+Q+ +I G+ Sbjct: 685 AKILIADDDSINLKVSKMFLKKLGYVALIAENGEKTLEVVEKENPDLILLDVQMPDIDGI 744 Query: 63 EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++TKQI+++ L+ P +IA+TA M+ ++E G + +++KP+ + + IKK+ Sbjct: 745 QVTKQIRKNKNLKRQPIIIALTANVMEEEKENCLSSGMDDFMTKPLLMQDLVYMIKKW 802 >gi|260946877|ref|XP_002617736.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720] gi|140083809|gb|ABO84860.1| histidine kinase receptor NIK1 [Clavispora lusitaniae] gi|238849590|gb|EEQ39054.1| hypothetical protein CLUG_03180 [Clavispora lusitaniae ATCC 42720] Length = 1082 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E R++K DV++MD+Q+ + G E Sbjct: 866 KILLAEDNLVNQKLAVKILEKQGHKVHVVENGLEAFEAIRKNKYDVVLMDVQMPVMGGFE 925 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 926 ATEKIRQWEKKSNPIDSLSFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 985 Query: 116 IKKYI 120 I K I Sbjct: 986 IAKCI 990 >gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 229 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED E + D + GY RNG E ++ D+II+DIQL + + Sbjct: 1 MNEHILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKRN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I++ P++ +TA D+ K G + Y++KP + M I+ + Sbjct: 61 GFDVCRDIRQAGVA--TPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|146299834|ref|YP_001194425.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146154252|gb|ABQ05106.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1373 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+++EDNE + D++ Y L+ +G+ ALE + PD+I+ D+ + E+ G Sbjct: 1124 KTVLVIEDNEEVLSFVYDIL-YHDYRVLKFTDGIHALEYMEKEIPDLIVTDVMMPEMDGF 1182 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +K + IPVI +TA + + G +AYISKP S+ TI + Sbjct: 1183 ELCTILKTNQNTNHIPVILLTAKSSTLNRIEGLSTGADAYISKPFSIEELKLTIANLL 1240 >gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I +D+ +K+ +E GY + ++G +A++LA KPD++IMDI + ++ GLE Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++IK ++P+I ++A D+ K G + Y +KP S + +K + + Sbjct: 65 ASQKIK---MKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRS 121 >gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297] gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297] Length = 951 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+ V+DN N+KL L+E+ G +G EA++LA D++ MDIQ+ + G+ Sbjct: 669 VLAVDDNPANLKLIVTLLESLGVEVTSASSGEEAVKLATDTVFDLVFMDIQMPSMDGMAA 728 Query: 65 TKQI-KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+QI + + + +P+IA+TA A+ + E + + G + Y++KPI T+ K+ G Sbjct: 729 TRQIRRAEPSNRHVPIIALTAHALAEEREAMLEAGMDDYLAKPIDEDQLQRTLFKWTG 786 Score = 37.4 bits (87), Expect = 0.69, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGM---EALELARQHKPDVIIMDIQLQEISGLE 63 +VE E+ ++ IE G +A + + E+L+ Q+ + I+D+ QE + E Sbjct: 530 VVEPREMTRLAYQHQIEGWGAVAREFESAAALAESLQSGNQYGVTLAILDVSSQEHN-DE 588 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + I P + + A A + + + G Y+++P + + K I Sbjct: 589 LYRTILTIDRELSCPTLVI-ANANDENINAHLLEQGAHYYLTRPFRSGELYQALLKLI 645 >gi|313157579|gb|EFR56995.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Alistipes sp. HGB5] Length = 849 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN R +E Y RNG EA A +PD+++ DI + +SG+E+ Sbjct: 579 ILVAEDNTALRDYLRSALENR-YNVSTARNGEEAYCQAINEQPDLVLTDIVMPGMSGIEL 637 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++IKE+S I VI +TA ++ E + G +AY++KP SL + I + Sbjct: 638 CRKIKENSRTSAIGVILLTAHNLQNYEVSGYRVGADAYVAKPFSLEVLFSRIDNLVAR 695 >gi|301057759|ref|ZP_07198828.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300448070|gb|EFK11766.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 438 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 20/139 (14%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL--ARQHKPDVIIMDIQL 56 M + ++++VEDN +N KL + +++ +GY NG EA+E+ A Q+ D+I MD+Q+ Sbjct: 296 MKRSVRILLVEDNPVNQKLAKMMLKKAGYQVQVANNGKEAVEMLMASQNGFDLIFMDVQM 355 Query: 57 QEISGLEITKQIKEDSE----------------LQEIPVIAVTAFAMKGDEERIRKGGCE 100 E+ GL T++I+ + + IP+IA+TA AMKGD+E G + Sbjct: 356 PEMDGLTATREIRRLEKEHVLRPPRGRDFHPLTRRRIPIIAMTAHAMKGDQETCMDAGMD 415 Query: 101 AYISKPISLSIFMETIKKY 119 Y++KPI + ++K+ Sbjct: 416 DYVAKPIKRDVVFSVVEKW 434 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 14/132 (10%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 KK ++V+DNE N+K+ +E G + GM+ L L Q D+ I DIQ+ Sbjct: 140 KKALLVDDNETNLKILARYLEPVGMRLVLLDKGMDVLPLLEKSIDEQDPFDICIADIQMP 199 Query: 58 EISGLEITKQIK--EDSE------LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109 ++SG E+ +QI+ E ++ +P++A+++ M+ D +R + G + +++KP+ Sbjct: 200 DMSGYEVARQIRLFESPHARLRMSIRSLPLMALSSM-MERDAKRCGEVGFDGFLAKPVRR 258 Query: 110 SIFMETIKKYIG 121 +++ +G Sbjct: 259 ERLYRMLERILG 270 >gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 233 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 3 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 63 GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|190892751|ref|YP_001979293.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698030|gb|ACE92115.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] gi|327188375|gb|EGE55592.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 233 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ L + +G+ +G EA D+IIMD+ + SG+ Sbjct: 12 AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++T+ ++ ++ +P+I +TA A G+ + G + Y+SKP + I + Sbjct: 72 DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|192361562|ref|YP_001984105.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] gi|190687727|gb|ACE85405.1| hipothetical sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107] Length = 688 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D N+ + ++E G L +G ALELA + PD++++D+ + +++G Sbjct: 79 ARILLVDDTPENLDILSAILEDLGCQLLVATSGERALELATRRLPDLVLLDVMMPDMNGF 138 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++K D EIP++ VTA D + + G YI+KPI+ +K + Sbjct: 139 EVCTRLKADLATTEIPIVFVTART--EDISQGFQVGGADYITKPINADEVRARVKYQLER 196 >gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W] gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820] gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W] gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 224 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I+GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 62 VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|86358612|ref|YP_470504.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86282714|gb|ABC91777.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 233 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D+ L + +G+ +G EA D+IIMD+ + SG+ Sbjct: 12 AHLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++T+ ++ ++ +P+I +TA A G+ + G + Y+SKP + I + Sbjct: 72 DVTRGLRA---IKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128 >gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B] gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 241 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ +P+I +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQTG--SPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia enterocolitica W22703] Length = 670 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED +L D ++ +GY NG E + RQ P +I++D+ L G+ Sbjct: 474 TVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGIS 533 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+ ++P++ VTA + D + G + YI KP S + +K + Sbjct: 534 ICREIR---RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 589 >gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase [Acinetobacter calcoaceticus PHEA-2] Length = 319 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IP+I +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPIIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|284054063|ref|ZP_06384273.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca] Length = 232 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+DNE+N L ++ GY L NG EAL++ R D++++DI + +++G ++ Sbjct: 8 VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPLDLVLLDIMMPQMNGYQV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D +L+ IPVI ++A R + G E Y+SKP + + I + Sbjct: 68 LESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACL 123 >gi|260172966|ref|ZP_05759378.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2] gi|315921245|ref|ZP_07917485.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695120|gb|EFS31955.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1355 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED++ + L+ YI + NG E L+ A + PD+I+ D+ + + GLE Sbjct: 1107 RVLVVEDDDDMRQYIVSLLSQQ-YIVYEASNGKEGLKEAVEQIPDLIVSDVMMPVMDGLE 1165 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K IKE+ IPV+ +TA A+ E + Y+ KP + + + + I Sbjct: 1166 LCKAIKEEMITAHIPVVLLTAKALNEHIEEGYSVMADDYVLKPFAPKVLLAKLDSLI 1222 >gi|218779449|ref|YP_002430767.1| response regulator receiver protein [Desulfatibacillum alkenivorans AK-01] gi|218760833|gb|ACL03299.1| Response regulator receiver domain protein (CheY-like) [Desulfatibacillum alkenivorans AK-01] Length = 122 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 79/118 (66%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+I+EDNE N+ L L+E SGY R+G + +A +PDVI++DIQL + G Sbjct: 4 KKVLIIEDNEQNLYLITYLLENSGYEVTPARDGAQGCAMAEVVQPDVILLDIQLPGMDGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +++ ++E P++AVT++AM GD+E+ GC YI KPI ++F++ +++++ Sbjct: 64 EVAKALRKKPLVKETPIVAVTSYAMPGDKEKALSAGCTGYIEKPIDPAVFIDQLEEHL 121 >gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22] gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22] Length = 1793 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1673 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1732 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1733 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVDPDHLLGVMEQWMR 1791 >gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] Length = 232 Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++VED + + + GY G + L A K D+II+D+ L +SG Sbjct: 1 MKEILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLMLPNLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI ++++ + P+I +TA + D+ G + Y++KP ++ + I+K + Sbjct: 61 IEICRRLRANKIT--TPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILS 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 225 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED +L ++ +E G++A +G E L +A DVI++DI L +++G + Sbjct: 2 KILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMALNGPFDVIVLDILLPKLTGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ IPV+ +TA D+ R G + Y+ KP + + I+ + A Sbjct: 62 VLEKIR--DSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRA 119 >gi|294627710|ref|ZP_06706292.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664634|ref|ZP_06729971.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598062|gb|EFF42217.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605594|gb|EFF48908.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 238 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ G E L L +++++DI L + G Sbjct: 11 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGH 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 71 EVLHEIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|282880384|ref|ZP_06289095.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305740|gb|EFA97789.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] Length = 231 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + ++ + +ET GY + EA+ + +++++D+ + +SG Sbjct: 7 RILVVDDEQDLCEILKFNLETEGYAVDTANSAEEAMNM-ELTSYNLLLLDVMMGAMSGFA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++KE+S IP+I +TA + D G + YISKP S+ + I+ I Sbjct: 66 MAKKLKEESATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124 >gi|225012590|ref|ZP_03703025.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] gi|225003123|gb|EEG41098.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] Length = 230 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D +++ R +E GY +G+EAL++A + P +II+D+ + ++G+E Sbjct: 7 KILLVDDEPDIIEIVRYNLEQVGYQIFSASDGLEALKVADKELPHLIILDVMMPNLNGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++D ++ +TA G + Y++KPI + + +K + Sbjct: 67 TCEKLRQDDRFLNTIIMFLTARGEDYSFVAAFDVGADDYVTKPIKPKVLVSKVKGLLRR 125 >gi|168069753|ref|XP_001786566.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660993|gb|EDQ48622.1| predicted protein [Physcomitrella patens subsp. patens] Length = 717 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 3/124 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 V++V+D+ +N+++ R+L+ GY + NG EALE + + D++I D + +SG Sbjct: 400 ATVLMVDDDPVNLQVLRNLLALEGYRLMTASNGQEALEKIQSGQSIDLVIADWMMPGMSG 459 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-- 119 L++ + ++ L +P++ +TA ++ D G ++ KP+ ++ Sbjct: 460 LDLCRSVRRQFSLSALPILLLTARSLPEDVRIGLSAGANDFLRKPVDAEELRARVRTLLE 519 Query: 120 IGEA 123 + + Sbjct: 520 LRRS 523 >gi|158520639|ref|YP_001528509.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158509465|gb|ABW66432.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 240 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++I+ED + + + GY + NG L + H PD+I++DI L + GL Sbjct: 7 KQILIIEDEAHIAQGLQLNLSLKGYDVMVAENGSRGLAAWKAHNPDLIVLDIMLPGMDGL 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + E +IP++ ++A D+ + G + Y++KP L F+ + + + Sbjct: 67 SVLQHIRLEDE--KIPILILSAKKEPIDKRKGLTYGVDDYLTKPFDLEEFLLRVDRLLTR 124 Query: 123 A 123 A Sbjct: 125 A 125 >gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 223 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + +E + NG E L +A + D+I+MDI L + GL Sbjct: 2 KILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ PV+ +TA D G + Y++KP + + + +K + Sbjct: 62 VIKELRSKEVT--TPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRR 118 >gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] Length = 1692 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 68/116 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N+K+ ++ GY A RNG+E L D++ MD+Q+ ++ GLE Sbjct: 1461 RILVAEDNPVNLKVVLMMLSHLGYRADSARNGLEVLSALEHRDYDLVFMDVQMPDMDGLE 1520 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++I++ + ++A+TA+A++GD +R G + YISKP+++ I+ Sbjct: 1521 AARRIRDMKGYEGPRIVAITAYALEGDRDRCIAAGMDDYISKPVTMEKLKAAIENV 1576 >gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator [Actinomyces oris K20] Length = 219 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IVED + ++ +G+ T G +A+ LA Q D+II+D+ L +I G Sbjct: 1 MSRILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ PVI +TA + D +GG + Y+ KP S + I+ + Sbjct: 61 FEVLQQLRGQGVGA--PVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118 >gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 232 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++ + Q P + TA + D+ G + +I KP S + + + Sbjct: 61 GYDFISEVQYIAPAQ--PFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1287 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++ +DN L+E Y +G AL + +PD+++ D+ + + G Sbjct: 655 ARIVCADDNADMRSYIGQLLEPL-YEVEIVGDGRAALASIHRQRPDLVLADVMMPVLDGF 713 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++ D + IPVI ++A A + + + G + Y+ KP S + I + Sbjct: 714 ELLHALRSDETTRAIPVIMLSARAGQEAQVEGLRAGADDYLVKPFSARELLARIASLL 771 Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN L+ G R+G AL + +P+V+++DI L + GLE Sbjct: 1168 RILVVDDNIDAADTLAMLLRLLGAEVEIARDGPGALAMHAAFRPEVVLLDIGLPGMDGLE 1227 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ + ++ +IA+T + + D R R+ G + ++ KP+S E + + Sbjct: 1228 VARRIRAEHGRDQVVLIALTGWGQEEDLRRSREAGMDHHLVKPVSFDTL-ERLLAGLR 1284 >gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W] gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W] gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED E ++ + +E GY + + G EA+E D+I++D+ L IS Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ + + IP+I +TA D+ G YI+KP + + I+ + Sbjct: 61 GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596] gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596] Length = 231 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY +G E L ++ +P ++I+DI + E+ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++ + L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRSEGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|309790317|ref|ZP_07684884.1| response regulator receiver protein [Oscillochloris trichoides DG6] gi|308227651|gb|EFO81312.1| response regulator receiver protein [Oscillochloris trichoides DG6] Length = 126 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 75/122 (61%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+E ++ + SG+ +G++AL R +P++IIMD+ + +++G Sbjct: 1 MPRILVVEDDETIREMVATYLRLSGFTVELAVDGIDALTKVRSVQPELIIMDMGIPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T++++ E + P+IA+TA+A++ D ER GC+A+ SKPI + +E I+ + Sbjct: 61 WQTTQRLRARKETAQTPIIALTAYALEEDRERAFNVGCDAFESKPIDFTSLIEKIQTLLA 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ + +G AL + D++++D+ L + G Sbjct: 1 MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S I+ + Sbjct: 61 NDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++I++D+E L +E G+ AL+ N + L L + + D+II+DI + +++ Sbjct: 1 MKDRILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E +I+E+ + +P+I ++A + D+ G + Y++KP + + +K I Sbjct: 61 GIEAAFKIREE---KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|254419790|ref|ZP_05033514.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196185967|gb|EDX80943.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 238 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 3/118 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ L + +E G+ ++ +G D++++D+ L + GL + Sbjct: 11 LVVDDDRDIRNLLSEHLEQHGFRTVKAADGRAMRAALEAGPVDLVVLDLNLPDEDGLSLC 70 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + I+ PVI +TA D + G + Y++KP + I+ + A Sbjct: 71 RAIRA---TSRTPVIMLTARGDPIDRIVGLEMGADDYMAKPFEPRELVARIRTVLRRA 125 >gi|157373328|ref|YP_001471928.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] gi|157315702|gb|ABV34800.1| response regulator receiver protein [Shewanella sediminis HAW-EB3] Length = 120 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 66/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++ V+D+ ++ ++T+G+ + NG EAL++A++ + D++I D+ + + G Sbjct: 1 MKRILAVDDSASMRQMVGFTLKTAGFDVTEASNGDEALKVAQKGEYDLVISDVNMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++ + P++ +T + ++ R G +I KP + + T++K +G Sbjct: 61 LTLIRNLRTLPAYKFTPLLMLTTESGTDKKQEGRSAGATGWIVKPFNPDQLLATVRKVLG 120 >gi|83945804|ref|ZP_00958147.1| two-component system response regulator [Oceanicaulis alexandrii HTCC2633] gi|83850807|gb|EAP88669.1| two-component system response regulator [Oceanicaulis alexandrii HTCC2633] Length = 234 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +V+D+E + +E GY +G AL + PD+ I DI++ + G Sbjct: 1 MATIALVDDDENILTSVSMFLENEGYNVRTFTDGSAALPHLTETPPDLAIFDIKMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ S +PVI +T+ + DE G + YI+KP S + IK + Sbjct: 61 LELLRRVRQSS---NLPVIFLTSKDGEFDEALGLDLGADDYIAKPFSHQLLARRIKAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] Length = 229 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D++ ++L I GY L +G EAL + +++I+D+ + E+ G+ Sbjct: 2 KILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ KQ+++DS +IP++ ++A D+ + G + Y++KP + M +K + Sbjct: 62 EVIKQVRKDS---DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 >gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ + + G+ +G A++ A +PD++++D+ L GL Sbjct: 20 RRVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVMLPGFDGL 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 80 EVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136 >gi|299147659|ref|ZP_07040723.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298514446|gb|EFI38331.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1343 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+++TS Y NG +AL + R+ PD++I DI + E+SG Sbjct: 1078 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1136 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK D E+ IPV+ +TA + + + G +AYI++P S+ I TIK + Sbjct: 1137 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITRPFSVGILKATIKNLLAN 1196 Query: 122 EA 123 A Sbjct: 1197 RA 1198 >gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] Length = 228 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED + L R +E +GY L +G L + R + D++I DI L ++ G Sbjct: 1 MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ IP++ +TA D+ G + Y+ KP I+ + Sbjct: 61 FELCKEIRA--ANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 226 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y +G +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator [Acaryochloris marina MBIC11017] gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator, putative [Acaryochloris marina MBIC11017] Length = 636 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ + GY NG AL AR PD+I++DI++ E+ G + Sbjct: 23 ILIVDDTPHNLQILSTALTKQGYQVRGAANGSMALIGARNIMPDLILLDIKMPEMDGYTV 82 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K ++ Q+IPVI ++A D+ + G YI+KP L+ + ++ + Sbjct: 83 CERLKSEALTQDIPVIFISALDDALDKVKAFTVGGVDYITKPFQLAEILARVENQL 138 >gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 228 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IVEDNE + ++ + GY + +A ++ + D +++D+ L I+G E Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++E L +P++ +TA D+ R G + Y++KP + IK I + Sbjct: 67 FVEHLRES--LINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRS 124 >gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G AL AR+ +PD +I+DI L ++ GL Sbjct: 23 RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLS 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +I+ EL ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 83 LLGRIRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 140 >gi|325660770|ref|ZP_08149398.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085492|ref|ZP_08334577.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472844|gb|EGC76054.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407730|gb|EGG87228.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 219 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D +++ R +E G+I ++G E + + D+I++D+ + I G Sbjct: 1 MAKILAVDDEAKILQIIRKALEKDGHIVQTVQDG-EVVRQMELSRYDLILLDVMMPGIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+E + P++ +TA ++ D G + YI KP L ++ ++ Sbjct: 60 FTLCREIRE---TVDCPIVFLTAKTLEEDLMAGLGSGADDYICKPFGLGELRARVQAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1624 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 66/117 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDNELN + +L+ +G+I +G AL+ + DV++MD+Q+ + G Sbjct: 1269 VLLVEDNELNQLVAVELLRGAGFIVDVAAHGQAALDCVAHTEYDVVLMDMQMPVMDGETA 1328 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++++ D +P+IA+TA AM+ D R + G ++ KPI + + +++ Sbjct: 1329 TRRLRTDPRHARLPIIAMTANAMEADRRRCFEAGMNDHVPKPIEPGMLWRALARWVR 1385 Score = 100 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 5/120 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V+IV+DN + +++ G+ ++ G +AL++ R ++++D ++ Sbjct: 1120 RVLIVDDNHTAAAVLSEMLRNMGFETRESHAGAQALDMLRDAAADGEPYGLLLIDWRMPG 1179 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+E+ ++I E Q ++ VTA+ R+ G E + KP+S S+ +T+ + Sbjct: 1180 MDGIELARRIHELGLDQAPQMLMVTAYGRDEIMPAAREQGIETVLVKPVSASLLYDTLAQ 1239 >gi|302556930|ref|ZP_07309272.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] gi|302474548|gb|EFL37641.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus Tu4000] Length = 1334 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG + +E + +++MD+ + E+ G Sbjct: 1214 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRKGIERLVDNPEVALVLMDVMMPELDG 1273 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ + ++P++AVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 1274 YAATAEIRSMPQYADLPIVAVTAKAMPGDREKSIASGASDYVTKPVDTQDLIACVRRWL 1332 Score = 41.3 bits (97), Expect = 0.048, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 13/100 (13%) Query: 28 IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK---QIKEDSELQEIPVIAVTA 84 + EA +++++ + E E+ + ++ DS L +PV+ + Sbjct: 1088 DIITAVGAQEAAGALATESCHCVVLELGMAEE---EVARFLEALRGDSALASVPVLVHSG 1144 Query: 85 F---AMKGDEERIRKGG-CEAYISKPISLSIFMETIKKYI 120 ++ R R G ++S SL E I ++ Sbjct: 1145 HRADTAVEEDLRSRARGTALEFLS---SLDELRERIALHL 1181 >gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 959 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+E ++ + ++ G +G EAL + + D+++MDIQ+ + G+E Sbjct: 836 RILLVEDDEFSLFAGKRMLHKMGCSVTTAPDGREALAILHEQDFDLVLMDIQMPVMDGVE 895 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ S+L IP+IA+TA+AM GD+E G + YISKP+ +++ I Sbjct: 896 ATKAIRGSSDLGEKSHIPIIAMTAYAMTGDKELFLAAGMDGYISKPVERDELKVVVERAI 955 >gi|224540428|ref|ZP_03680967.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM 14838] gi|224517942|gb|EEF87047.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM 14838] Length = 1369 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED++ +E Y ++ NG++ + A Q PD+++ DI + + +GLE+ Sbjct: 1116 VLLVEDDKDVRDYLHKSLEND-YEIIEAANGVKGYDKAVQFFPDLVLSDIMMPKRNGLEL 1174 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 IK D + IPVI +TA +M + G + Y+ KP S+ + I+ + Sbjct: 1175 CSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLL 1230 >gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens Pf0-1] gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator [Pseudomonas fluorescens Pf0-1] Length = 633 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VEDN +N + ++ + G+ +G++A+ A ++ + I+MD +L I G Sbjct: 515 RNVLLVEDNPVNQTVIEAMLRSLGFTVSVATDGVQAVRSAGDNRFEAILMDCRLPLIDGY 574 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I++ ++P+IA+TA A++GD E G Y++KP + + +++++ Sbjct: 575 EATRRIRQLPGCGQVPIIALTANALQGDRENCLAAGMNDYLAKPFKHNDLQQILQRWV 632 >gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 228 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1236 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL++ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E +P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWI 1229 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + + + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus prevotii ACS-065-V-Col13] Length = 223 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IVED ++L ++ ++ GY+ ++G EAL+LA D+II+DI L + G E Sbjct: 2 KVLIVEDERKLLRLLKEGLDLLGYVTDVAKDGEEALDLAYVECYDIIILDINLPKKDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ + +E+ +I +TA + D + G Y++KP L ++ + Sbjct: 62 VLRDIRQFN--KEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLRR 118 >gi|317407497|gb|EFV87452.1| winged helix family Two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 195 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+++ED+ + + GYI +G+ +A + D+I++D+ L + G + Sbjct: 67 RVLVIEDDPDILANITHHLTRRGYIVDCAEDGLRGYAMAAEGGFDLIVLDLMLPRLDGYD 126 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ P+I VTA + G + Y+ KP +L+ +K + A Sbjct: 127 LCRQLRA-EAGCGTPIIIVTARDTLDNRLAGFDAGADDYLVKPFALAELAARVKALLHRA 185 >gi|162453232|ref|YP_001615599.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161163814|emb|CAN95119.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 376 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+DNE N L + +E GY + G E ++ HKPD +++D+++ + G Sbjct: 9 RVLVVDDNEQNRALAQATLEDDGYEVVLAVTGEEGIQQFELHKPDCVLLDVRMPGMDGFA 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+ E P++ +TA + + G + +++KPI S + ++ + Sbjct: 69 VCSRIRGLPEGASTPIVFLTALRDVDTFDSALRAGGDDFLTKPIRPSELLVRVQAALR 126 >gi|114568628|ref|YP_755308.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339090|gb|ABI64370.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 236 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +V+D+E + +E GY +G AL + PD+ I DI++ + G Sbjct: 1 MATIALVDDDENIITSVSIFLEGEGYNVRTYNDGASALTALAEDPPDLGIFDIKMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++++ S +PVI +T+ + DE G + YI+KP S + E +K + Sbjct: 61 LELLRRLRQSS---NLPVIFLTSKDDEFDEALGLNLGADDYIAKPFSQRLLGERVKAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] Length = 247 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 55/110 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L +E GY NG EA + PD++I+D L +SGLE Sbjct: 19 RILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEAELRIAETPPDLVILDWMLPGVSGLE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 I ++++ +++P+I +TA + + R G + Y+ KP S M Sbjct: 79 ICRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELM 128 >gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IVED E L+ G+ + +G AL + D++++D+ L + G Sbjct: 1 MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLMLPGMGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S I+ + Sbjct: 61 NDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 242 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+IVED+ +L R + GY +G L + D +++D+ L + GL Sbjct: 5 KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I ++A + + + G + Y++KP S+ + +K + Sbjct: 65 EICRRARAMARY--TPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRR 122 >gi|325103127|ref|YP_004272781.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM 12145] gi|324971975|gb|ADY50959.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM 12145] Length = 349 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I+EDN + +++E +GY L NG +E+A+ + PD+II DI + E+ Sbjct: 1 MKNKILIIEDNLDIREGTAEILELAGYEVLTAPNGKAGVEMAQNNLPDLIICDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + ++ + IP I +TA A + D + + G + Y++KP + I+ + Sbjct: 61 GYGVLYLLGKNPDTASIPFIFLTAKAERIDLRKGMEMGADDYLTKPFDDIELLNAIESRL 120 >gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1620 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 72/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV++VEDN +N ++ R+L+ +G NG A+E+ ++ + D ++MD Q+ + G Sbjct: 1134 AKVLLVEDNAINQEVARELLARNGVRTKVADNGRTAMEMLQKERFDGVLMDCQMPVMDGY 1193 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ +++P+IA+TA M GD+E+ G A+I KPI+ +T+ ++I Sbjct: 1194 EATRKIRAMGGFEDLPIIAMTANVMAGDKEKCLACGMNAHIGKPINFKELSQTLGRWI 1251 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 20/132 (15%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA----RQHKPDVIIMDIQLQEI 59 V++V+DN +F ++ G+ A +G EAL L ++ D+ I+D L ++ Sbjct: 984 HVLVVDDNSAARDIFLGMLTRFGFQAEAAASGKEALALLEEKGQERPYDMAIIDWVLPDM 1043 Query: 60 SGLEITKQIKEDSELQEIP--VIAVT-------AFAMKGDEERIRKGGCEAYISKPISLS 110 SG E+ + +++ ++ P ++A T A + D E + KP S Sbjct: 1044 SGRELCQALRDAPKIDPKPKIILAATHGRPTLKALTEELDTE-------NTVLHKPFMPS 1096 Query: 111 IFMETIKKYIGE 122 I +G Sbjct: 1097 SLFNAIMDAMGR 1108 >gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231] gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19] Length = 232 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D+ ++ ++E G+ + +G A+E + +PD++++D+ L ++ Sbjct: 8 MPQKILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMN 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 G++I + I+++S +P++ +TA D + G + YI+KP + Sbjct: 68 GIDICRLIRQNS---TVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELI 117 >gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] Length = 1778 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1658 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 1717 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1718 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIGSGASDYVTKPVDPDHLLSVMEQWMR 1776 >gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] Length = 232 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D++ ++ + GY L+ +G EA+++ ++++ D++IMD+ + + G Sbjct: 1 MAKILVCDDDKDIVEAIDIYLTQEGYEVLKAYDGDEAIKVLKRNEVDLLIMDVMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E+ +P+I ++A + D+ G + Y++KP + + +K + Sbjct: 61 IRATLKIREN---MSLPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|209522707|ref|ZP_03271265.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] gi|209496756|gb|EDZ97053.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328] Length = 580 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 66/115 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED L + +L+ + L+ +G+ ++LA Q +PD+I+ D+ + + G Sbjct: 1 MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQEQPDLILCDVMMPILDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + Q++++ + IP I +TA A + + + + G + YI+KP S + M +I Sbjct: 61 YGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSI 115 >gi|160936076|ref|ZP_02083449.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC BAA-613] gi|158440886|gb|EDP18610.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC BAA-613] Length = 219 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IV+D + L + SGY ++G EAL L D+I++DI L + G Sbjct: 1 MIKVLIVDDEKPICDLIDLNLSASGYHCTSVQDGAEALRLIENQFFDLILLDIMLPGVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I I+ +IPVI +TA D + + G + Y+ KP + + ++ + Sbjct: 61 YDIMSYIRPM----DIPVIFITARHEVKDRVKGLRLGADDYLVKPFDVVELVARVEAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|167033014|ref|YP_001668245.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166859502|gb|ABY97909.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 246 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L + ++ +G +G + + D+I++DI + GL Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA + D + G + Y++KP S + I + Sbjct: 66 LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123 >gi|22298114|ref|NP_681361.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294292|dbj|BAC08123.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 120 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED M L ++ SGY + + EALE Q+KPDV++ D+ + +SG Sbjct: 1 MTKVLVVEDIPSEMALISSFLQESGYAVITATDAKEALEKVAQYKPDVVVTDVVMPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + +K++ E +++P++ T+ + D K G +AY++KP S + +K + Sbjct: 61 FELCRSLKKNPETEKLPIVVCTSKNQELDRLWAMKQGADAYVTKPFSREDLVRALKSVV 119 >gi|148265171|ref|YP_001231877.1| response regulator receiver protein [Geobacter uraniireducens Rf4] gi|146398671|gb|ABQ27304.1| response regulator receiver protein [Geobacter uraniireducens Rf4] Length = 124 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/119 (41%), Positives = 76/119 (63%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E +KL L+ + GY+ +G ALE + ++PD++I+DI L EI G E Sbjct: 5 KILVVEDEESLLKLESILLTSKGYLVTGVMDGRAALEEIKTNRPDLVILDIMLPEIDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+IKE++E + IPV+ +TA D ER R+ G +AYI+KP + ME I+ IG+ Sbjct: 65 VCKRIKENNETKSIPVVMLTAKKSNQDVERGRQVGADAYITKPFRSARVMEVIEGLIGK 123 >gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + D + +GY+ Q +G E L +AR + D+ I+D+ L SGLE Sbjct: 2 RLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ D +PV+ +TA D + G + Y+ KP + + ++ + A Sbjct: 62 LIRALRADGRT--LPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRA 119 >gi|301308087|ref|ZP_07214041.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] gi|300833557|gb|EFK64173.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] Length = 1369 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++ VEDNE + + +T Y + +NG LE A + PDVI+ D+ + ++G+ Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKAMEILPDVIVSDVMMPVMNGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + +K D IPVI +TA A + + G + Y+ KP SL++ IK + Sbjct: 1165 ECCEALKMDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKIKNLLKR 1224 Query: 123 A 123 + Sbjct: 1225 S 1225 >gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 222 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + GY +G+E L A + D++I+DI L ++G Sbjct: 2 RLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLPGMNGYR 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ ++P++ +TA + DE G + Y++KP S + + +K + Sbjct: 62 VCAALRA--AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118 >gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAEGHG--FPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC 13950] Length = 227 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] Length = 231 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED++ L + +E +GY + +G L L + H ++I DI L ++ G Sbjct: 1 MYSILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I++ IPV+ +TA D+ G + Y+ KP IK + Sbjct: 61 FELCKEIRK--ANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|254411375|ref|ZP_05025152.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181876|gb|EDX76863.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 779 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++++D N+K D ++ +GY ++G++ L+L Q PD+II+D+ + E+ G E Sbjct: 15 KILLIDDRVENLKPISDCLQNTGYEVRIAKSGIKGLKLLEQLTPDLIILDVIMPEMDGFE 74 Query: 64 ITKQIKEDSELQEIPVIAVTA---FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + ++IPVI +TA + + + G YI+KPI + + IK ++ Sbjct: 75 TCRHLKTWEKTKDIPVIFMTAAMDTSNSEAKVKGLSLGAVDYITKPIQVDEVLARIKTHL 134 >gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 225 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAEGHG--FPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT] gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT] Length = 234 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++ED+ + + + Y + G E LE ++ D+II+DI L EI Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+ L +P++ ++A + D+ + K G + YI+KP SL ++ I Sbjct: 61 GFTVCKNIR---LLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNI 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|90414906|ref|ZP_01222870.1| transcriptional regulatory protein CpxR [Photobacterium profundum 3TCK] gi|90323962|gb|EAS40558.1| transcriptional regulatory protein CpxR [Photobacterium profundum 3TCK] Length = 231 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ L D++E G+ ++ NG+E L D+I++D+ + +++G Sbjct: 1 MAKILLVDDDVELTSLLTDILEMEGFDIVEANNGIEGLAKIDT-SIDLILLDVMMPKMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 TQMLRKLRESFAT---PVLMLTAKGEEIDRVLGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|332523095|ref|ZP_08399347.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176] gi|332314359|gb|EGJ27344.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D + + ++ +G++ +G +ALE RQ++ D+II DI + + Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGHLVTVASDGSQALEKFRQNQYDLIISDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ E P + +TA + D+ G + +ISKP S + +K + Sbjct: 61 GYDFIGEV--LLEKPNQPFLFITAKISEPDKIYSLSLGADDFISKPFSPRELVLRVKNIL 118 Query: 121 GE 122 Sbjct: 119 NR 120 >gi|329888730|ref|ZP_08267328.1| transcriptional regulatory protein chvI [Brevundimonas diminuta ATCC 11568] gi|328847286|gb|EGF96848.1| transcriptional regulatory protein chvI [Brevundimonas diminuta ATCC 11568] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +V+D+E + +E+ G+ +G LE PD+ I+D+++ + G Sbjct: 1 MANITLVDDDENIVASVSLALESHGHTVTAYHDGASGLEALETTPPDLAILDVKMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++++ IPVI +T+ + DE G + YI KP S + +E +K + Sbjct: 61 MEVLRRLRQ---TSSIPVIMLTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|294055133|ref|YP_003548791.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614466|gb|ADE54621.1| response regulator receiver sensor signal transduction histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 382 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 68/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+E+ KL R ++E SG+I ++ +G A++ +++PD+I++D+ + I G Sbjct: 13 RILVVDDDEIIRKLLRRVLERSGFIVDESDSGEAAIQCIVENQPDLILLDVVMDGIDGFI 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK ++ +P+I VT + G G YI+KPI+ + I+ ++ Sbjct: 73 TCRKIKSMEGMESVPIIFVTGRSDTGSIVEGLDAGGSDYITKPINRHESLARIRNHL 129 >gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 227 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|149908621|ref|ZP_01897283.1| FOG: CheY-like receiver [Moritella sp. PE36] gi|149808455|gb|EDM68392.1| FOG: CheY-like receiver [Moritella sp. PE36] Length = 120 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 62/120 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++ V+D+ ++ + ++ +GY +G++ L A+ D+II DI + + G Sbjct: 1 MKRILAVDDSVSIREMVQFTLKQAGYQVDSAVDGVDGLAKAKTGNFDLIISDINMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++ +S + P++ +T + + + G +I KP + + T+KK + Sbjct: 61 ISLIRKLRSESAYKFTPILMLTTESGTDKKMAGKSAGATGWIVKPFNPEKLIATVKKVLR 120 >gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1236 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL++ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E +P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWI 1229 Score = 97.1 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + + + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 914 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ EDN +N +L L+E G+ +G +A+E Q DV++MD+Q+ E+ G + Sbjct: 782 HVLVAEDNAVNQRLALRLLEKRGHRVKIVGDGAQAVEALAQDSFDVVLMDVQMPEMDGFQ 841 Query: 64 ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T I+E Q +P++A+TA AM+GD ER G + YISKP+ F E ++ Sbjct: 842 ATAAIRERERGTGQHMPIVAMTAHAMRGDRERCLAAGMDDYISKPLRAEDFYEVVE 897 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 5/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 V+IV+DN N ++ ++I G L +G +AL R ++++D+ + ++ Sbjct: 640 VLIVDDNATNRRILDEMIRGWGMKPLAVESGPKALAALRNAAGIGRPLRLVLLDMMMPDM 699 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + K+I + VI +++ R G A++ KP+ S +E I Sbjct: 700 DGFAVAKEIARGGGDERPAVIMLSSAQKDEMARRNWATGIAAFLLKPVRQSELLEAIFAV 759 Query: 120 I 120 + Sbjct: 760 L 760 >gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 65 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118 >gi|3243089|gb|AAC23929.1| histidine kinase [Candida albicans] Length = 1081 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G E Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994 Query: 116 IKKYI 120 I K I Sbjct: 995 INKCI 999 Score = 33.6 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 + + RD I G I + RN +A L K D+I+ I +EI K+++ SE+ Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813 Query: 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + IP++ V + + G +Y + P S++ I Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855 >gi|78223511|ref|YP_385258.1| response regulator receiver protein [Geobacter metallireducens GS-15] gi|78194766|gb|ABB32533.1| response regulator receiver protein [Geobacter metallireducens GS-15] Length = 123 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 68/118 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED E +KL L+ + GY + +G+ ALE +PD++I+DI L EI G Sbjct: 4 KKILIVEDEESLLKLESILLTSRGYEVVGATDGVAALEQVGLTRPDLVILDIMLPEIDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++IK++ E PV+ +TA + D R G AY++KP + +E I+ + Sbjct: 64 EVCRRIKQNPETAHTPVVMLTAKKSEQDCARGMAAGASAYVTKPFKSAKIIEIIQDLL 121 >gi|301059812|ref|ZP_07200706.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [delta proteobacterium NaphS2] gi|300446138|gb|EFK10009.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [delta proteobacterium NaphS2] Length = 246 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + + + GY +G AL+ Q +PD+I++DI L EI GL + Sbjct: 8 ILVVEDEAHLAEGLKLNLALKGYDVRIAMDGTSALQTWEQWRPDLIVLDIMLPEIDGLSV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + E IP++ ++A D + G + Y++KP +L F+ +K+ + Sbjct: 68 LRKIRLEDE--RIPILILSARGDPDDRVKGFTYGVDDYLAKPFNLDEFLLRVKRLLTR 123 >gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 3/114 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED + ++ GYI + +G + LE A D+II+D+ L ++G+E Sbjct: 5 KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVMLPSLNGME 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + ++++++SE +PVI +TA D+ G + YI+KP ++ + I+ Sbjct: 65 VLRRLRQNSE---VPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIR 115 >gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 229 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED L R + G+ +G +A+ A + DVI++D+ L + G E Sbjct: 2 RVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ ++A D R G + Y+ KP S ++ I Sbjct: 62 VCRRLRAAERWA--PVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRR 118 >gi|218261992|ref|ZP_03476633.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii DSM 18315] gi|218223650|gb|EEC96300.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii DSM 18315] Length = 372 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 64/114 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + +++ GY L T +G +AL +A++ P++I++DI + E+ G E Sbjct: 9 TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIAQERHPNLILLDIMMPEMDGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + +K + E IPVI ++A + + + G Y++KP ++ + Sbjct: 69 VLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122 >gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis HI4320] gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC 29906] gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320] gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC 29906] Length = 235 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED +L D ++ S Y +G E ++ +Q D++++D+ L G+ + Sbjct: 10 ILIVEDEPKLAQLLIDYLQASDYQTQWLADGTEVIQHIKQSHYDLVLLDLMLPGKDGITL 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K++++ +IP+I VTA + D + G + YI KP S + +K + Sbjct: 70 CKELRQ---FSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRR 124 >gi|166711394|ref|ZP_02242601.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575701|ref|YP_001912630.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520153|gb|ACD58098.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 229 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++VED+ + + + G+ +G A++L RQ PD++++D+ L ++SG+ Sbjct: 4 KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I+ + PVI VTA + ++ + G + Y+ KP S + + + Sbjct: 64 EVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum] Length = 1762 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDV--IIMDIQLQEIS 60 KKV++V+D+ N+ +++ + G A+E+ ++ PD+ ++MDI + E+ Sbjct: 1642 KKVLVVDDDVRNIFAMTTILDAQQMKTVYVETGRAAIEMLQR-TPDIEIVLMDIMMPEMD 1700 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+ E +P+IAVTA AMKGD E+ + G YISKP+ + ++ ++ Sbjct: 1701 GYDTIRAIRAKPEHHALPIIAVTAKAMKGDREKCFEAGANDYISKPVDPEHLLAMLRLWL 1760 Query: 121 GE 122 Sbjct: 1761 HR 1762 Score = 93.7 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 4/116 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVE++ D+ G+ A+ G AL + R+ + + I +DI L ++ G + Sbjct: 1375 VLIVENDASFAHFVMDVAHDHGFKAILAYRGGAALSIVRERRVNAITLDINLPDMDGWRV 1434 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKY 119 ++K D + IPV +T + ER + G + KP+ + ET ++ Sbjct: 1435 LDRVKRDLATRHIPVQVIT---TDEERERALRMGATGVLCKPLKTRDALDETFRRL 1487 Score = 53.2 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++ E +E + +L+ +G EAL+ DV+I+ + L ++ Sbjct: 1496 RTVVLAEPDEAERQELVELLGGDDVTIRSVASGEEALDALLTEGADVLILHLDLPDMRCF 1555 Query: 63 EITKQIKEDSELQEIPVIA 81 ++ Q+ + S E+PV+ Sbjct: 1556 DLIGQLAQGSGPTELPVLV 1574 >gi|117925955|ref|YP_866572.1| histidine kinase [Magnetococcus sp. MC-1] gi|117609711|gb|ABK45166.1| histidine kinase [Magnetococcus sp. MC-1] Length = 667 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++V+D+E N L + + + NG EAL L ++ D+I MDIQ+ + GL Sbjct: 545 KRILLVDDSEDNRSLIQAYLRRYPHALTTAENGKEALTLVKEKHFDIIFMDIQMPVMDGL 604 Query: 63 EITKQIKEDSEL----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+ + +P+IA+TA M DE++ GC +++KPI + ++ I Sbjct: 605 SATRAIRAWELTQQSNRNVPIIALTAHVMLEDEKKSIDAGCNFHLTKPIKKARLIDIIDN 664 Query: 119 Y 119 + Sbjct: 665 H 665 >gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1] gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1] Length = 239 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED E + +E Y + +G +AL+ Q KP +I++D L G+ Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWMLPVYDGMT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S ++P+I +TA D G + Y++KP + + I+ + Sbjct: 67 VLRRIRKQS---DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122 >gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 233 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++MI++D+ ++ + YI N +EA+E +P +II+D+ + I+ Sbjct: 1 MKTRIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPLEAIEALENDEPSIIILDVMMPHIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E K+I++ + ++P+I +TA D + G + Y+SKP + I + Sbjct: 61 GFETCKRIRK---ISDVPIIMLTARGDVSDRIAGLESGVDDYMSKPFEPRELVARISAIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|119898693|ref|YP_933906.1| putative sensor-regulator protein [Azoarcus sp. BH72] gi|119671106|emb|CAL95019.1| putative sensor-regulator protein [Azoarcus sp. BH72] Length = 1012 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN +N ++ + + +G +G E ++ A D+I+MD+Q+ + GL Sbjct: 672 ARVLLVEDNPINQQVATEFLRQAGLQVDLAGDGYEGVDRAVATAYDLILMDVQMPGMDGL 731 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ P++A+TA A+ D ER R G +++KPI + T+ ++I Sbjct: 732 EATRRIRARD--SHTPIVAMTAHALDTDRERSRAAGMNGHLTKPIDPAELETTLVRWI 787 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---QHKPDVIIMDIQLQEI 59 K +++V+DN + R +IE ++A +G EA+ R + V++MD + + Sbjct: 523 KPILVVDDNPTARAMLRTMIEHFHFVADTAASGEEAILKIREAGEQGYAVVLMDRDMPGL 582 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGD--EERIRKGGCEAYISKPISLSIFMETIK 117 G+E ++IK D L P I + A K +E G + ++KP+ S+ ++ Sbjct: 583 DGIEAARRIKLDLSLPTPPRILLMASYTKDHALQEAGHGAGLDGILTKPVGPSLLFNSLL 642 Query: 118 KYIGEA 123 K +G A Sbjct: 643 KVLGHA 648 >gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1627 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED N L L+++ G+ + NG EA+ + KPD+I MDI++ ++G E Sbjct: 1419 RILVVEDKFSNRLLLLKLLQSIGFDVKEAHNGQEAITIWSSWKPDLIFMDIRMPVMNGYE 1478 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ IK E + +IA+TA A + D + I GC+ +I KP + I++++G Sbjct: 1479 ATQYIKSTPEGNQTVIIALTASAFEEDRQMILSAGCDDFIRKPFQEEEILTVIRQHLG 1536 >gi|59713364|ref|YP_206139.1| transcriptional regulator SyrB [Vibrio fischeri ES114] gi|59481612|gb|AAW87251.1| probable transcriptional regulator SyrB [Vibrio fischeri ES114] Length = 221 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ L +++++ GY G ALE + H D++++D+ L ++ G Sbjct: 1 MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHSIDLVLLDVMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I + P++ +TA + + G + +I+KP ++ + I + Sbjct: 61 YQVARRICQRFAT---PILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1236 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL++ D ++MDIQ+ + GL Sbjct: 1114 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTA 1173 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E +P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1174 ARALRERFSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWI 1229 Score = 97.5 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 968 RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGGD 1027 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + + + P +I +TA+A + + + A + KP S + I Sbjct: 1028 VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFAVLQKPFKASSLFDEI 1084 >gi|313204235|ref|YP_004042892.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] gi|312443551|gb|ADQ79907.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] Length = 229 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +ET GY+ + EAL+ +++++D+ + E+SG + Sbjct: 5 RILVVDDEEDLCEILQFNLETEGYLVDVAYSAEEALKK-DISIYNLLLLDVMMGEVSGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++E+ ++ IP+I +TA + D G + YISKP S+ + +K I A Sbjct: 64 MARILRENPKMANIPIIFLTAKDSETDRLTGFNIGADDYISKPFSIREVLARVKAVIRRA 123 >gi|299138655|ref|ZP_07031833.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298599291|gb|EFI55451.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 251 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L ++ +G +G + + D+I++DI + GL Sbjct: 11 HILVVDDDREIRELVSSYLKKNGLRVTIAADGRQMRSFLEANTVDLIVLDIMMPGHDGLV 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + IPV+ +TA + + D + G + Y++KP + + IK + Sbjct: 71 LCRELRS-GKHKAIPVLLLTARSDEMDRIIGLEMGADDYLTKPFAARELLARIKAILRR 128 >gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 229 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 K+++V+D++ +L I GY + +G EAL R + ++I+DI + ++G+ Sbjct: 2 KILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNGI 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K++++DS+ IP+I ++A D+ + G + Y++KP + M +K + Sbjct: 62 EVIKEVRKDSQ---IPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118 >gi|226227265|ref|YP_002761371.1| two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090456|dbj|BAH38901.1| two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 347 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+++ R ++ Y L R+G +ALELAR PD+++MDI + +SG + Sbjct: 10 TLLLVDDESTNLQVLRHTLQDQ-YRLLFARDGHKALELARTDPPDLVLMDIMMPGLSGYD 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K+D+ + IP+I VTA A +E+ G YISKP + I ++ ++ Sbjct: 69 VCRALKQDAFTEHIPIIFVTALADAANEQLGLDLGAVDYISKPFNPHIVKARVRTHL 125 >gi|126650201|ref|ZP_01722429.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905] gi|126592851|gb|EAZ86833.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905] Length = 1021 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 64/117 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +N+++ ++ Y + +G++AL + H+ D++I D+ + ++SG E Sbjct: 689 RILVVDDEPINLRVVETILANEQYDIVTVTSGLDALVSIQSHEWDLVISDVMMPKMSGYE 748 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + I++ + ++P++ +TA + + E+ G Y++KP+ + I Sbjct: 749 LVRLIRKQFSITDLPILLLTARSQPQNLEKGFLAGANDYVTKPVDALELRSRVAALI 805 >gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis C] gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis C] Length = 250 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 4 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 64 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|153005118|ref|YP_001379443.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] gi|152028691|gb|ABS26459.1| response regulator receiver modulated diguanylate cyclase [Anaeromyxobacter sp. Fw109-5] Length = 509 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ +++E Y + +G A++LAR+ PDV++MD+ + + GL+ Sbjct: 195 RLLVVDDEADAREVLTEVLEPE-YEVMLAEDGEAAVDLAREEHPDVVLMDLFMPRLDGLQ 253 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++++ D+ +IPVI V+ + R G Y+ KP S +++ + Sbjct: 254 ALERLRSDASTSDIPVIFVSGHGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLR 311 >gi|71279117|ref|YP_269981.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H] gi|71144857|gb|AAZ25330.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H] Length = 232 Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L D + +GY G E + + D+I++D+ L G Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L I ++I+E I +I VTA + D + G + YI KP S + +K + Sbjct: 61 LTICREIQE---FSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + +E GY+ NG EA+ L + D++++D+ + I G E Sbjct: 6 RILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++K +++ +I +TA D+ + G + Y++KP + + I+ + + Sbjct: 66 VCKRMKAQ---KDVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRK 121 >gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 65 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118 >gi|260778745|ref|ZP_05887637.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604909|gb|EEX31204.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 749 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN+ N + R++ + G NG A+E+ Q+ D+I MDI + E+ G+E Sbjct: 475 ILVAEDNKANQLVIREMFKRMGLSMDIAENGRRAIEMVEQYHYDLIFMDISMPEMDGMET 534 Query: 65 TKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ D + +IP+IA+TA ++ GD+E+ G Y+SKPI LS +E I ++ Sbjct: 535 CRAIRSMTDEKTCQIPIIALTAHSLSGDKEQFLDAGMNDYLSKPIRLSQLIEKINLFL 592 >gi|3851457|gb|AAC72284.1| Nik1p [Candida albicans] Length = 1081 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G E Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994 Query: 116 IKKYI 120 I K I Sbjct: 995 INKCI 999 Score = 33.6 bits (77), Expect = 9.6, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 + + RD I G I + RN +A L K D+I+ I +EI K+++ SE+ Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813 Query: 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + IP++ V + + G +Y + P S++ I Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855 >gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+ED + ++ +E + +G LEL + D+ ++D L ++SG+E Sbjct: 2 RLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+++ +PVI +TA D G + Y+ KP + + I+ + + Sbjct: 62 VCRQLRK--AGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQ 118 >gi|21241604|ref|NP_641186.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|84625209|ref|YP_452581.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|294626081|ref|ZP_06704689.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665691|ref|ZP_06730966.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325915004|ref|ZP_08177335.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325922400|ref|ZP_08184169.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|21106962|gb|AAM35722.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|84369149|dbj|BAE70307.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|292599617|gb|EFF43746.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604533|gb|EFF47909.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325538792|gb|EGD10457.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325547097|gb|EGD18182.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E G+ ++G++ LA ++ DV+++D+ L + G+E+ Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 82 CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138 >gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 222 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++EDN ++ + +E SGY L +G+ L AR++ PD++I+D+ L + Sbjct: 1 MEQRILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDFD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI +++++ +P+I +TA + + + G + Y++KP + +K + Sbjct: 61 GAEIARRLRK---TSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIM--DIQLQEISG 61 K+++V+D+ +L ++ GY + +G EA+ + PD+ +M D+ + ++G Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTN-PDIALMVLDVMMPNMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++DS IP++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 61 LEVVKIVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3] gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ GY + +G L LA + D++++D+ + +++G Sbjct: 1 MANILLIDDDTELTSLLKEVLSFEGYEVSEANDGEAGL-LAINSEIDLVLLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|322418618|ref|YP_004197841.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] gi|320125005|gb|ADW12565.1| response regulator receiver modulated diguanylate cyclase [Geobacter sp. M18] Length = 338 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+++ +++ Y L ++G + + + +QH PD+I++DI + + G E+ Sbjct: 26 VLIVDDTPANIEILYKILKDR-YDILFAKSGADGIRMVQQHMPDLILLDIMMPGMDGYEV 84 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K D IPV+ VTA DE++ + G Y++KPI I + ++ ++ Sbjct: 85 CSILKRDPVTARIPVVFVTAMGNDEDEKKGLELGAIDYLTKPIRPPIVLARVRNHL 140 >gi|288942102|ref|YP_003444342.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] gi|288897474|gb|ADC63310.1| response regulator receiver modulated diguanylate cyclase [Allochromatium vinosum DSM 180] Length = 304 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLE 63 ++IV+D N+++ D +++ Y +G++ALE+A PD+I++D+ + E+ G E Sbjct: 13 ILIVDDLPANIRVLADTLKSD-YRVRVATSGLKALEVAAGDPPPDLILLDVMMPEMDGYE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K+D IP+I VTA +E R + G YI+KP L I ++ ++ Sbjct: 72 VCRRLKDDPRTSTIPIIFVTAKDEAEEEARGLELGAVDYITKPFHLPIVRARVRTHV 128 >gi|239997164|ref|ZP_04717688.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonas macleodii ATCC 27126] Length = 333 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 73/117 (62%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D +N+++ + L+ + Y + RNG EAL+L +P++I++D+ + ++G E Sbjct: 10 TLLLVDDEPVNLRVLKQLL-ANDYQLIFARNGEEALKLTETRQPNLILLDVMMPGLTGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q+K+ ++ + IPVI VTA + +E + G YI+KPIS +I +K ++ Sbjct: 69 VCRQLKQQADTRHIPVIFVTALNDEHEETEGFEAGAVDYITKPISPAIVKARVKTHL 125 >gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K++IV+D++ ++L ++ GY + NG EA+ + PD ++I+DI + ++ G Sbjct: 2 KILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTN-PDIGLMILDIMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + +++++DS+ IPV+ ++A D+ + G + Y++KP + M +K + Sbjct: 61 LAVVREVRKDSQ---IPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D ++L ++ G+ +G++ALE+A + KPD I+D+ + + G Sbjct: 5 STKVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVMMPGMDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++ E PV+ +TA G + Y++KP SL + ++ + Sbjct: 65 FELLPKLRALGF--EGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILR 122 Query: 122 E 122 Sbjct: 123 R 123 >gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQE 58 M K+V+IVED+ L R + GY +G L L Q P D +++D+ L Sbjct: 1 MSTKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL++ ++ + + +P+I ++A + + G + Y++KP S+ + ++ Sbjct: 61 VDGLQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRA 118 Query: 119 YIGEA 123 + A Sbjct: 119 LLRRA 123 >gi|91774039|ref|YP_566731.1| response regulator receiver protein [Methanococcoides burtonii DSM 6242] gi|91713054|gb|ABE52981.1| response regulator receiver [Methanococcoides burtonii DSM 6242] Length = 123 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/119 (40%), Positives = 80/119 (67%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VEDN +NM+L +L+E+ GY Q +G AL+ ++ K D+I++D+QL + G Sbjct: 1 MAQILVVEDNPMNMELTVNLLESWGYEVGQAEDGPIALDKVKEAKYDLILLDMQLPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ +KEDSE IPV+A+TA +M GD+++ GC YISKPI + F + I +++ Sbjct: 61 LEVLSHLKEDSETAGIPVVALTAHSMAGDQDKFLDAGCTGYISKPIDIHEFKKRIVEFL 119 >gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans] Length = 934 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 69/127 (54%), Gaps = 9/127 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH----KPDVIIMDIQLQEI 59 +++VEDN +N K+ ++ GYI +G +AL+ P ++MD + + Sbjct: 801 HILLVEDNPINRKVISLALQKLGYIVTAVCDGQQALDYLCTSSPHPPPHALLMDCMMPNV 860 Query: 60 SGLEITKQIKEDSEL-----QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 G + T++I+ D L + +P+IA+TA A+KGD E+ + G + +++KP + Sbjct: 861 DGYQATRRIRTDETLFSESVRRLPIIALTASAIKGDREKCFEAGFDDFLTKPAARDDLKR 920 Query: 115 TIKKYIG 121 T+ +++G Sbjct: 921 TLLRWLG 927 >gi|308069099|ref|YP_003870704.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858378|gb|ADM70166.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++IVED+ L + +E GY + N + L + ++ KPD++++D+ L G Sbjct: 1 MQKILIVEDDPQISSLLQSYLEKYGYQGINVSNFDQVLAIFQEVKPDLVLLDVNLPRFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QI+ S P++ V+A K D+ + G + YI+KP + + ++ + Sbjct: 61 FYWCRQIRTQS---TCPILFVSARDDKMDQVIALQNGADDYITKPFYPEVLLAKVESNLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI] gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + Y NG +AL+ D+I++DI + I+ Sbjct: 1 MLMRVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103] gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103] gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED +L D ++ S Y +G E L+ Q PD+I++D+ L GL + Sbjct: 10 ILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLMLPGKDGLTL 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ DSEL P+I VTA + D + G + Y+ KP S + +K + Sbjct: 70 CREIRRDSEL---PIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRR 124 >gi|262273414|ref|ZP_06051228.1| signal transduction response regulator [Grimontia hollisae CIP 101886] gi|262222392|gb|EEY73703.1| signal transduction response regulator [Grimontia hollisae CIP 101886] Length = 318 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D N+ + R +++ Y + ++G A+ELA Q +PD+I++DI + ++G E+ Sbjct: 2 LVVDDEPSNLHVMRTILQEH-YTLIFAKSGERAIELAIQQRPDLILLDIMMPGMNGYEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +K + + IPVI V+A E K G ++ KP+S + + +GEA Sbjct: 61 RALKHEDSVSHIPVIIVSALDEYQSEVEGLKSGAADFLIKPVSPDLVKSRVANLLGEA 118 >gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K++ VED+ + + +E+SGY R EAL L R + D++++D+ L + +G Sbjct: 1 MQKILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHYDLLLLDVTLPDGTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++ S IP+I +TA + + G + YI+KP L+ + IK + Sbjct: 61 FDVCKEVRSSS---TIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 241 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+IVED+ +L R ++ GY +G L + D +++D+ L + GL Sbjct: 5 KRVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + ++ + Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRR 122 >gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ GY + NG +AL+ + D+ I+DI L ++ Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E PVI +TA GD+ + YI+KP + + +K + Sbjct: 61 GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLELVARVKAQL 116 Query: 121 GE 122 + Sbjct: 117 RQ 118 >gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea sp. MED297] Length = 1090 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 KV++V+D+ N ++ G+ NG AL+ + +I+MDI + + G Sbjct: 965 KVLVVDDDLRNTYTLSKILSNEGFRVSIADNGQLALDKLSKDSNIALILMDIMMPVMDGY 1024 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +I+ + +P+IA+TA AM D ++ G + Y+ KP+ L + ++ +I Sbjct: 1025 ETIARIRAQHS-ETLPIIALTAKAMPEDRQKCLSAGADDYLPKPVDLEQLLVKVRGWI 1081 Score = 94.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +I+ED+ G AL T G++AL + P +I+D+ L +I G EI Sbjct: 806 LIIEDDPSFAAYLEKAARKQGMSALVTGYGLQALSYCLRKPPGAVILDLGLPDIDGCEIL 865 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + ++ + IPV ++A R + G E Y++KPI+L Sbjct: 866 QVLQNLQHHRNIPVHVISALDDPA---RAMQLGAEEYLAKPINLEQL 909 >gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] Length = 247 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++I+ED E + + GY + G E +++ D+II+D+ L IS Sbjct: 13 MKENILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLMLPGIS 72 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I + +IP+I +TA D+ + G + YI+KP + + IK + Sbjct: 73 GYDVCREI---NPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCL 129 Query: 121 GE 122 Sbjct: 130 RR 131 >gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407] gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407] gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC H10407] Length = 240 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ L R ++ GY + +G ++L L + D +++D+ L + GL Sbjct: 5 KKILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++I++ + +PVI ++A + + G + Y+ KP S+ + +K Sbjct: 65 EICRRIRQMAGY--LPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRR 122 >gi|295687624|ref|YP_003591317.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295429527|gb|ADG08699.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +++D+E + ++ G+ +G+ LE + PD++I+D+++ + G Sbjct: 1 MATITLIDDDENIVASIAMTLQAHGHTVNHFHDGVSGLEGVEANPPDLVILDVKMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++++ SE IPVI +T+ + DE G + Y+ KP S + +E +K + Sbjct: 61 MEVLRRLRQHSE---IPVIMLTSKDEEIDEVLGFNLGADDYMHKPFSQRLLVERVKAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|260220090|emb|CBA27281.1| hypothetical protein Csp_A01490 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 305 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+IV+D++ + ++++ +GY N EA + + KP +I+MD+ + +G Sbjct: 59 QKVLIVDDSKTELLYLTEILQKNGYTVRAAENADEAFKRLAEEKPQLILMDVVMPGQNGF 118 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++T+ I E +IP+I T+ +++ D + G + YI+KP+ S + IK Sbjct: 119 QLTRAINRTPEYADIPIIMCTSKSLETDRVWGMRQGAKDYITKPVDASELLAKIKAL 175 >gi|170761007|ref|YP_001787015.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407996|gb|ACA56407.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D + + ++ G + ++G++AL L H +IIMDI + ++ G++ Sbjct: 5 KVLIVDDEDEIREAVEIYLKNEGIAVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ + IP+I ++A + D+ G + Y++KP ++ + +K + Sbjct: 65 ATFKIREN---KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120 >gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii M21/2] Length = 648 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 73/123 (59%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59 K +++VEDN LN ++ ++++ +G++ +G+EA+E Q + D+I+MDIQ+ + Sbjct: 525 KHLLLVEDNALNREIAIEILKEAGFLVDTAGDGVEAVEKMEQSVPGQYDLILMDIQMPRM 584 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G E T++I+ D IP+ A+TA A + D++ G +I+KP+ + ++ ++ Sbjct: 585 DGYEATRRIRALPDPRKAGIPIFAMTANAFEEDKQNALNAGMNGHIAKPLDIPHLLKVLE 644 Query: 118 KYI 120 + + Sbjct: 645 EAL 647 Score = 84.8 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 10/124 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQE 58 + ++ +D+ ++ G T +G EA+ + + V I+D + + Sbjct: 386 RALVADDDTNTCLSVSTMLSKIGMRPEWTISGKEAVIRTKYAVEQGDAFSVYIIDWLIPD 445 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+EI +QI++ P+I +TA+ EE R G A+ KP+ LS +K Sbjct: 446 MNGIEIVRQIRK-VIGDSCPIIILTAYDWADIEEEARAAGVTAFCEKPLFLSEL----RK 500 Query: 119 YIGE 122 + E Sbjct: 501 VLAE 504 >gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] Length = 241 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQLQEI 59 ++++VED++ + + + + G+ +G ALE + D++++D+ L + Sbjct: 13 RLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGV 72 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ + ++ P+I V+A + D + G + Y+ KP + + + Sbjct: 73 SGLDVCRYMRRRGF--STPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRAL 130 Query: 120 IGEA 123 + + Sbjct: 131 LRRS 134 >gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D+ + + + GY NG +AL LA + PD+II+DI L I Sbjct: 1 MRARILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALA-ANNPDLIILDIMLPGID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 GL + +QI+ +S +IP++ +TA D G + Y+ KP +L Sbjct: 60 GLAVCRQIRSNS---DIPILMLTARDDTADRVLGLDTGADDYLVKPFALEE 107 >gi|87119492|ref|ZP_01075389.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Marinomonas sp. MED121] gi|86164968|gb|EAQ66236.1| Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase [Marinomonas sp. MED121] Length = 560 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 1/121 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K++IV+D E N + ++ GY + NG ALE+ + + D+I++D+ + + Sbjct: 1 MSVKILIVDDYEDNRYTLKRRLKRDGYKECDEAENGQIALEMMSKKQYDLILLDLMMPIM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + +K E + +PVI ++A + G E Y+ KP + I +K Sbjct: 61 DGFEVLEHMKLKDEFRHLPVIMISAADDLEKIAQGIALGAEDYLPKPFNPIILKARVKSA 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606] Length = 319 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|189465197|ref|ZP_03013982.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM 17393] gi|189437471|gb|EDV06456.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM 17393] Length = 1357 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN+ + + +D++ Y L NG E L + +Q PD+II DI + +I G+ Sbjct: 1100 TILMIDDNKELLWMLKDILSDE-YSVLTAENGEEGLTILKQKTPDLIITDIMMPKIDGIT 1158 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + KQ+K + IP++ ++A ++ + G +AYI KP + IK+ + Sbjct: 1159 LIKQLKSNKHTMHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLKSIIKQLL 1215 >gi|189466658|ref|ZP_03015443.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM 17393] gi|189434922|gb|EDV03907.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM 17393] Length = 1369 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED++ +E Y ++ NG++ + A Q PD+++ DI + + +GLE+ Sbjct: 1116 VLLVEDDKDVRDYLHKSLEND-YEIIEAANGIKGYDKAVQFFPDLVLSDIMMPKRNGLEL 1174 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 IK D + IPVI +TA +M + G + Y+ KP S+ + I+ + Sbjct: 1175 CSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLL 1230 >gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104] gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis NCTC 9343] gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis NCTC 9343] gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis 638R] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ ++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NISSYHLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + ++P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622] gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus] gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + L + +G+ G L AR H PD++++D+ L +++G Sbjct: 1 MSRILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +K D+EL++ VI V+A + D + + G + Y+ KP S+ + +K + Sbjct: 61 SEVLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|124265328|ref|YP_001019332.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258103|gb|ABM93097.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 251 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 6/125 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQ 57 + + ++IVED + T G+ L G AL+ + P ++I+D+ L Sbjct: 1 MARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +++G E+ K+I+E ++PV+ +TA + + D + G + Y++KP S + ++ Sbjct: 61 DLNGFELFKRIRE--RAADLPVVFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVR 118 Query: 118 KYIGE 122 + Sbjct: 119 TVLRR 123 >gi|326410769|gb|ADZ67833.1| Response regulator receiver [Brucella melitensis M28] gi|326554061|gb|ADZ88700.1| Response regulator receiver [Brucella melitensis M5-90] Length = 118 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 89/118 (75%), Positives = 107/118 (90%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 MIVEDNELNMKLFRDLIE SGY ++TR+G+EAL+LAR+H PD+I+MDIQL E+SGLE+T Sbjct: 1 MIVEDNELNMKLFRDLIEASGYETIRTRSGLEALDLAREHHPDLILMDIQLPEVSGLEVT 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K +K+D EL+ IPVIAVTAFAMKGDEERIR+GGCEAYISKPIS+ F+ETIK Y+G+A Sbjct: 61 KWLKDDEELRHIPVIAVTAFAMKGDEERIRQGGCEAYISKPISVPRFIETIKSYLGDA 118 >gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I +D + +++ S Y NG +AL+ A D II+DI + + G E Sbjct: 6 KLLIADDETELVNALVAILKHSNYTVDAVYNGTDALDYALAGDYDGIILDIMMPGMDGTE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E PV+ +TA D R G + Y+ KP + + ++ + Sbjct: 66 VLKKIREKGL--STPVLFLTAKTEVDDRIRGLDLGADDYLPKPFDMGELLARVRAMLRR 122 >gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126] Length = 240 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ ++P+I +TA + D + G + Y+ KP + + K + Sbjct: 67 ICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 >gi|237725959|ref|ZP_04556440.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229435767|gb|EEO45844.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1448 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+EDNE ++ Y+ L+ NG + LE+ + PD++I DI + E+ G+E Sbjct: 1182 RILIIEDNEELRHFICGVLARE-YVVLEAGNGCQGLEMTLRELPDIVISDIMMPEMDGIE 1240 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++K ++++ IP+I ++A + D+ + + G + YI+KP S + + + Sbjct: 1241 YLKRVKGNNDICHIPIILLSAKSSLNDQIQGLEYGADEYITKPFSSAYLKARVDSLL 1297 >gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] Length = 219 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED++ KL + SGY ++ +G EA+ + R + D+I++DI L + G Sbjct: 1 MPKILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEEFDLILLDIMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+E PVI +TA D + K G E YI KP + I+ + Sbjct: 61 FQVMEKIRETG----TPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R] gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ + +G AL +++ D++++D+ L +SG Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKELRS---VSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|120610912|ref|YP_970590.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] gi|120589376|gb|ABM32816.1| response regulator receiver protein [Acidovorax citrulli AAC00-1] Length = 140 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60 +K V+IV+D+ +L R +E G + +G AL +AR +PD++++D+ + + Sbjct: 13 MKTVLIVDDHAEIRRLLRMTLEDQGVALHEAASGEAALAMARAQRPDLVLLDLMMPGSLD 72 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E+ ++I+ D +L VI ++A D + G +ISKP S + ET+++ Sbjct: 73 GMEVCRRIRNDPDLSHTRVIILSARDGLQDRAAGMQAGASGFISKPFSPAYLAETVRRL 131 >gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 223 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + +E Y +G E L+ A+ + + I+D+ + + GL Sbjct: 2 KILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKKDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E ++PV+ +TA D + G + Y++KP + + + ++ + + Sbjct: 62 VIRELRE--GGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRS 119 >gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++V+D +++ ++ G+ +G AL+LAR+ PDVI++D+ L + G Sbjct: 11 SPRALVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGLPGMDG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + ++ + V+ +TA A + D G + YI+KP S M ++ + Sbjct: 71 IEVCRTLR---TFTDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|291516107|emb|CBK65317.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301] Length = 1357 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 VM+V+D+ + ++ + Y + T +G +AL L R + PD+++ DI + +I G+E Sbjct: 1104 TVMVVDDDSNILDFLVKVL-GNDYFVISTDSGSQALNLLRNNDPDLVVSDIMMADIDGIE 1162 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++IK D IPVI +TA + + G +AYI KP S I + Sbjct: 1163 LCRRIKNDISTSHIPVILLTARTGISSKIEGFECGADAYIEKPFSPDQLKAQIFSLLR 1220 >gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3] gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 241 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQVGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] Length = 224 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED++ +L +++ GY + +G+EAL+L H D++I+DI + + G E Sbjct: 4 ILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHVDLVILDIMMPGMDGYEF 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+Q++ +P++ VTA + D+ + G + Y++KP+ + I+ + A Sbjct: 64 TRQLRATDYT--LPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALLRRA 120 >gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032] gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+++VED + ++ ++ GY G++ L+ + D++++D+ L E+ Sbjct: 1 MNKGKILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPEL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGLE+ +++++ + P++ +TA D+ G YI+KP + + I+ Sbjct: 61 SGLEVLRRVRKTNTA--TPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQ 118 Query: 120 IG 121 + Sbjct: 119 LR 120 >gi|71905649|ref|YP_283236.1| response regulator receiver modulated metal dependent phosphohydrolase [Dechloromonas aromatica RCB] gi|71845270|gb|AAZ44766.1| response regulator receiver modulated metal dependent phosphohydrolase [Dechloromonas aromatica RCB] Length = 379 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 69/117 (58%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLE 63 +++V+D+ N+ L +++ Y +G +AL++ PD+I++DI + +SGLE Sbjct: 10 ILVVDDSPENIDLLSEVLRDE-YRIRVATSGEKALKIVYSDEPPDLILLDIMMPGLSGLE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I +++K + + + IPVI VTA + DE+R + G YI+KPIS I ++ ++ Sbjct: 69 ICRRLKANPDRRRIPVIFVTAMSSMDDEKRGLETGAVDYITKPISPPIVKARVRTHL 125 >gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104] gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium subsp. avium ATCC 25291] gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium 104] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++++D ++ R + GY + G AL A +HKPDV+I+D+ L +ISG Sbjct: 1 MTRVLVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGLPDISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++ PVI ++A D+ G + Y++KP + F+ ++ + Sbjct: 61 IDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|120600124|ref|YP_964698.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146291948|ref|YP_001182372.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560217|gb|ABM26144.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145563638|gb|ABP74573.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319425239|gb|ADV53313.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++VED+ + D + GY G ALE+ PD++++D+ + +G Sbjct: 5 KHILVVEDDTSLAEWISDYLLDHGYEVTVASQGDFALEMIADETPDLVLLDVMMPVKNGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+ + P++ +TA GDE R G + Y++KPI + + IK + Sbjct: 65 DVCKEARAFYAG---PILFMTACVEDGDEIRGLDAGADDYLTKPIRPQVLLARIKALLRR 121 >gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis ATCC BAA-1200] gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis ATCC BAA-1200] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ + +L + + G +G + + DV+++D + +++G Sbjct: 1 MSRVLLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQYDVVVLDSMMPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K ++ S IP+I +TA D + G + Y+ KP + + I + Sbjct: 61 LDVLKTVRTQS---SIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1273 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 77/125 (61%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNE+N + +++IE +G+ NG EA++L ++ K D+++MD Q+ G Sbjct: 1003 RILVTEDNEINQIVTQEIIERAGFQCRLANNGQEAIDLLKKRKFDLVLMDCQMPVKDGFT 1062 Query: 64 ITKQIKE--------DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T +I++ Q +P++A+TA A+KGD+ER K G +AY++KPI + + T Sbjct: 1063 ATAEIRQIQPKGELNKDLPQHLPIVALTANAVKGDQERCLKAGMDAYVAKPIDPQLLIST 1122 Query: 116 IKKYI 120 I+K + Sbjct: 1123 IRKLL 1127 Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 +++ V+D E N + + I T G + + EAL+ + + ++ I D + E Sbjct: 854 RILAVDDVETNRVILQTQIATWGAEVVTVSSANEALQELQTAAREERPFEICITDYNMPE 913 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL++++ + D +L++ + +T+ ++ + G A KPI S + Sbjct: 914 MDGLQLSRSVSNDPDLKDTRFLLLTSSDGIE-RRQLEENGIHACSCKPIRPSRLFNELLA 972 Query: 119 YI 120 + Sbjct: 973 LL 974 >gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum DSM 43021] gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum DSM 43021] Length = 1392 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K++IV+D+ N+ ++E G + NG E +E R +++MDI + E+ G Sbjct: 1261 AKILIVDDDIRNVFALTSVLERYGSTVVYAENGREGIEQLERNEDVALVLMDIMMPEMDG 1320 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + ++P+IA+TA M+GD E+ G Y+ KP+ + +E ++ ++ Sbjct: 1321 WATTSAIRRMPQFADLPIIALTAKVMQGDREKSIASGASDYVPKPVDVDRLLERLRGWLT 1380 Query: 122 E 122 Sbjct: 1381 R 1381 >gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|91785401|ref|YP_560607.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689355|gb|ABE32555.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 245 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + +L ++ G+ ++GM + +P +I++DI + E+ Sbjct: 1 MNPSILVVDDDPVVRELVSGYLQGRGFKVDTLQDGMALQRQLQHERPALIVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA A D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D++ L RD +E + L N EA E +Q D +I+DI + +G Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ S ++P++ ++A + D+ R G + YI K S + +K + Sbjct: 64 AFCRRIRAKS---DVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp. subtilis str. 168] gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp. subtilis str. 168] gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yclJ gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis] gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp. subtilis str. 168] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN + G+ A +G+E + + D+II+DI L + G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E +P+I +TA + D+ + G + Y++KP S + IK I Sbjct: 62 ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117 >gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 254 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++VED+ + + +G+ + +G+ AL+ R+ +PDV+I+D+ L +SGL Sbjct: 23 ATVLVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAWRERRPDVVILDVMLPLMSGL 82 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++ + + + VI ++A + D + G + Y+ KP S + ++ + Sbjct: 83 EVLRRRRAEDDHAA--VIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRR 140 Query: 123 A 123 A Sbjct: 141 A 141 >gi|327405174|ref|YP_004346012.1| Crp/Fnr family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320682|gb|AEA45174.1| transcriptional regulator, Crp/Fnr family [Fluviicola taffensis DSM 16823] Length = 352 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 62/121 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++EDN + +++E + Y + NG E + LA + PD+II DI + + G Sbjct: 1 MKKILLIEDNIDIRENTAEILELAQYEVITAENGKEGVRLAIKETPDLIICDIMMPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++ E IP I +TA A + D + G + Y++KP M I+ + Sbjct: 61 HGVLHLLSKNEETAGIPFIFLTAKAERSDVRKGMAMGADDYLTKPFDDQELMNAIETRLN 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1] gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1] Length = 319 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+I++D+ +++ + +E + + T++G+ AL L + ++ D+I++D+ L +I+ Sbjct: 1 MQYKVLIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGLPDIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I K+I+E SE P+I +TA ++ + GC+ YI KP + IK + Sbjct: 61 GEHICKKIREMSET---PIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAIL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|283850562|ref|ZP_06367850.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574133|gb|EFC22105.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++V+D+ N+ ++ G L+ +G +ALE+ R D ++MDI + + G Sbjct: 1110 KKVLVVDDDMRNLFALSKVLTEKGLRVLKADDGAKALEILRAEPDVDAVLMDIMMPGLDG 1169 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+E+S +P+IA+TA AMK D + G Y++KP+ + + ++ ++ Sbjct: 1170 YEAMRRIREESRFAGLPLIALTAKAMKEDRGKCLAAGANDYLAKPVDVDKLLSMLRVWL 1228 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 51/108 (47%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED+ + RDL G+ A+ G E L LA + P +I+D++L ISG + Sbjct: 841 ILIIEDDPDFAAILRDLSRGKGFRAVAAATGEEGLSLAERLCPLGVILDLRLPGISGWTV 900 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 +K + + IPV V+ D + G +++KP+ Sbjct: 901 LGALKRNHATRHIPVHVVSVHDAPRDAVNSQIMGAVGFLNKPVDGEEL 948 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 49/100 (49%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ + R L+ + +G +ALE D +I+DI L ++ G E+ Sbjct: 967 LLVEDDPDLRRGIRRLVADLDVNVTEAGSGAKALEALAGRSFDCMILDIGLSDMCGFELL 1026 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 +++++D E+ PVI T + +EE ++ I K Sbjct: 1027 QRLEKDREVPVPPVIVYTGRDLTREEEMELYRHADSIIIK 1066 >gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 210 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L RD + GY L NG AL + Q PD+II D+ + E+ G Sbjct: 5 KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGQRALGILEQDIPDMIICDVMMPEMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q++++ +PV+ ++A D + G + Y+ KP + ++ + Sbjct: 65 TFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 122 >gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + +G L D+I++D+ + +++G Sbjct: 1 MAHILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAALNDE-IDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENW---TTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366] gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1196 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V+I +D+ N+ +E L +G EAL+ + + D+++MD+ + E+ G Sbjct: 1074 KTVLIADDDVRNIFSLTKALEQHKMKVLAATDGKEALQTLKDNPLVDIVLMDMMMPEMDG 1133 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E TK+I++ + +++PV+AVTA AM GD E+ G YISKP+ + + ++ ++ Sbjct: 1134 YETTKEIRKIAAYKQLPVLAVTAKAMMGDREKCIAAGASDYISKPVDIDQLISLLRVWL 1192 Score = 88.6 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED+ K Y + G +ELA ++P I++DIQL G ++ Sbjct: 806 ILIIEDDTNFAKTLLRFTRKRNYKGIVAVRGDAGIELANHYRPLAILLDIQLPVKDGWQV 865 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K + + IPV +++ ++ G +I+KP++L + +K Sbjct: 866 MEELKSNPLTRPIPVHIMSSL---EVKKESLLKGAVDFINKPVALEQMQQIFQKL 917 Score = 68.6 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 47/103 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IVE+N+ + + + N +++ + + D +I+D+ + + S Sbjct: 926 KKVLIVEENKQHAEALSYFLSNYNIQTEVADNVTQSIGALNKQEVDCVILDMGIPDKSAY 985 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E IK+ L+ +P+I T + EE K ++ + K Sbjct: 986 ETLDTIKKSKGLENLPIIIFTGKNLSKGEESRIKQYADSIVVK 1028 >gi|253688514|ref|YP_003017704.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755092|gb|ACT13168.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+EDN + + E GY+ R+G L +A Q+ D I++D+ L + G Sbjct: 1 MTRLLIIEDNPELVANLYEFFEPLGYVLDDARDGATGLRMATQNDYDAILLDLMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++++ + +PV+ +TA D + G + Y+ KP SL IK + Sbjct: 61 MTLCRKLRQEFQNP-VPVLMLTARDPIDDRVQGLALGADDYLVKPFSLKELDARIKALVR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1] gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1] Length = 255 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G +G A+ AR +PDV+++DI L ++ GL Sbjct: 28 RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPDMDGLA 87 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q++ E+ ++PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 88 VLGQLRR--EIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS 145 >gi|172039201|ref|YP_001805702.1| putative two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700655|gb|ACB53636.1| putative two-component response regulator [Cyanothece sp. ATCC 51142] Length = 608 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ GY + G AL++ + PD+I++DI + ++SG E+ Sbjct: 26 ILIVDDTIENLRVLSSILIEQGYSVRKATGGKMALKVVKTLPPDLIMLDIMMGDMSGYEV 85 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++KE+ + +IPVI ++A D+ + + G YISKP + + +K + Sbjct: 86 CQKLKENPDTADIPVIFLSALDDVFDKVKAFEMGGVDYISKPFQMEEVLVRVKNQL 141 >gi|170748282|ref|YP_001754542.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] gi|170654804|gb|ACB23859.1| response regulator receiver modulated diguanylate cyclase [Methylobacterium radiotolerans JCM 2831] Length = 457 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D N++L + + L NG +A+ + + D++++D+ + + Sbjct: 1 MSARVLIVDDLFPNVRLLETKLGLEYFDTLAAMNGRDAIAICEKGLCDLVLLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + +K + IPV+ VTA D R G + +++KP+ + ++ + Sbjct: 61 GFEVCRHLKNNPLTAHIPVVMVTALDQPADRLRGLDAGADDFLTKPVDDTALFTRVRSLV 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ED + + + ++ + EAL A + D+ ++ + L GL Sbjct: 156 ARILLIEDRPGSAERLAGALRQH-HVVTVEPDPQEALRRAAEETFDLALVSLDLTGFDGL 214 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDE---ERIRKGGCEAYISKPISLSIFMETIKKY 119 + Q++ + +P+I + A + D R G ++ +P+ + M ++ Sbjct: 215 RLCSQLRSLDRTRAMPLIML---AEEYDRARVVRGLDFGVHDFLMRPVDRNELMARVRTQ 271 Query: 120 IGE 122 + Sbjct: 272 VKR 274 >gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1187 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K V+I +D+ N+ +E G + +G EAL H +++MD+ + E+ G Sbjct: 1065 KTVLIADDDVRNIFSMTKSLEKHGMKVISATDGKEALHQLDSHPETAIVLMDMMMPEMDG 1124 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T +I++ + +PVIAVTA AM GD E+ G YISKP+ + ++ ++ Sbjct: 1125 YESTARIRQHPHFKHLPVIAVTAKAMLGDREKCIAAGASDYISKPVDIDQLTSLLRVWL 1183 Score = 93.7 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ K GY + G + LA+Q++P I++DIQL G E+ Sbjct: 799 VLIVEDDTAFGKALLGFTRKRGYKGIVAVRGDHGIALAQQYQPVAILLDIQLPVKDGWEV 858 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K +S + IPV ++ +M+ E K G +I+KPI++ + +K Sbjct: 859 MEELKSNSATRHIPVHIMS--SMEVKRESRMK-GAVDFINKPIAMDQMKQMFQKL 910 Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 52/103 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IVE+N + + +ET + + E+++ + + D +IMD+ + + + Sbjct: 919 KKVLIVEENARHAQALSYFLETFKVSSAIAGSVNESVDALKNKEVDCVIMDMGIPDKNAY 978 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E+ + IK + L+++P+I T + EE + + + K Sbjct: 979 EMLETIKHNPGLEDLPIIIFTGKHLSSGEESRIRQYADTIVVK 1021 >gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] Length = 1819 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1699 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1758 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1759 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1816 >gi|283852211|ref|ZP_06369484.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] gi|283572437|gb|EFC20424.1| response regulator receiver modulated diguanylate cyclase [Desulfovibrio sp. FW1012B] Length = 305 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++V+D+ ++ + + + + + +G EAL L + PD+I++DI + ++ G Sbjct: 8 ARVLVVDDSPSHLAILTESLRSE-FDVRVATSGAEALRLVDETPPDLILLDILMPDMDGY 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K D + IPVI +TA DE + G YI KP+++ I ++ ++ Sbjct: 67 EVCRRLKADFATRNIPVIFLTAKNDVADETQGLAIGAVDYIIKPVTVPIVQARVRTHV 124 >gi|238026723|ref|YP_002910954.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN L+ + Y +G L+ AR+ +PD+++ D+ + + G Sbjct: 610 ARILVADDNADMRHYLNSLLGGA-YRVEAVADGARLLDAARRERPDLVLTDVMMPNLDGF 668 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ED L+E+PVI ++A A + G + Y+ KP S + I + Sbjct: 669 AVRGALREDPRLREVPVILLSARAGEEARIAALDAGVDDYLVKPFSARELLARIGAVLER 728 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 25 SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQEIPVIAVTA 84 G+ + ++AL LA +P I++DI L + G E+ ++++ ++ ++AVT Sbjct: 1153 EGHQVKVAYSALDALALAPSFEPSAILLDIGLPGMDGHEVARRLRAMPAGRDAQLVAVTG 1212 Query: 85 FAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + D ER G +A++ KP++++ ++ G Sbjct: 1213 YGQAADRERALAAGFDAHLVKPVAMAQL----QRLFGR 1246 >gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++ ++IV+D +++ R +E G+ L+ R+G AL ++ K D+ I+DI + I+ Sbjct: 1 MVRTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++++ + +P+I ++A + D+ G + +ISKP SL + I+ + Sbjct: 61 GYELIKIVRKEYK---MPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED++ + +++ GY Q +G+E L++ + + + I+D+ + + G Sbjct: 3 MNHVLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVMMPRMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++T +++E + PVI ++A + + D+ G + Y++KP + + + + Sbjct: 63 IQMTIKLREKYDF---PVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810] gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + +G L D+I++D+ + +++G Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAVNS-DIDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|3850150|emb|CAA21950.1| histidine kinase [Candida albicans] gi|238883421|gb|EEQ47059.1| hypothetical protein CAWG_05614 [Candida albicans WO-1] Length = 1081 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G E Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994 Query: 116 IKKYI 120 I K I Sbjct: 995 INKCI 999 Score = 33.6 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 + + RD I G I + RN +A L K D+I+ I +EI K+++ SE+ Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813 Query: 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + IP++ V + + G +Y + P S++ I Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855 >gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator [Ralstonia eutropha JMP134] gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 224 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + R + S ++ G + L A +H+ D+II+D+ L +SG + Sbjct: 2 KILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLPGMSGWD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++E ++ PV+ +TA D R + G + Y++KP + + ++ + Sbjct: 62 VLRQLRER---KDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRR 117 >gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD 2210633] gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus Peru-466] gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD 2210633] gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus Peru-466] gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + +G L D+I++D+ + +++G Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|2911164|dbj|BAA24952.1| CaNIK1 [Candida albicans] Length = 1081 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G E Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994 Query: 116 IKKYI 120 I K I Sbjct: 995 INKCI 999 Score = 33.6 bits (77), Expect = 9.5, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 + + RD I G I + RN +A L K D+I+ I +EI K+++ SE+ Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813 Query: 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + IP++ V + + G +Y + P S++ I Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855 >gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120] gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ GY G E+A D++I+D L +GLE Sbjct: 8 RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGLE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ ++ PV+ +TA D + G + Y+ KP L + ++ + + Sbjct: 68 ICQELRRQGKI--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 125 >gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + GY +G E L A + D++I+DI L ++G Sbjct: 2 RLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLPGMNGYR 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ E+P++ +TA + DE G + Y++KP S + + +K + Sbjct: 62 VCAALRA--AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118 >gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 899 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 K ++IV+D+ N+ R +E G L+ NG+E L + + + D ++MDI + E+ G Sbjct: 772 KHILIVDDDYRNIYALRQALEHKGVHILEASNGVECLNILQTATRVDAVLMDIMMPEMDG 831 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I++D +L E+P+IA+TA AMK D++R + G YISKP++L + ++ Sbjct: 832 YETMERIRKDLQLHELPIIALTAKAMKQDQDRAFEAGASDYISKPLNLEQLFSVLTVWL 890 >gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1461 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1203 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1261 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA + + + G AYI+KP S + I + + E Sbjct: 1262 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1320 >gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 64 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 64 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC 49540] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED E ++ + +E SGY NG A+EL++++ D II+DI + +G+E Sbjct: 6 RILLAEDEEQLARVLKMAMEQSGYQVDAVENGQAAVELSQKNAYDAIILDIMMPIKNGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I+ + ++ +TA A + D G + Y++KP SL + ++ A Sbjct: 66 ALKEIRARGD--RTYIMMLTAMAEEDDRVNGLDSGADDYLTKPFSLKELLARLRSLERRA 123 >gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] Length = 798 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 41/114 (35%), Positives = 69/114 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDN+ N L L+E G +G+EA++ + +K D+I+MD + ++G+E + Sbjct: 679 LIVEDNKTNQMLLSILLEDFGLTYDVANDGLEAVDKVKNNKYDLILMDENMPNMNGIEAS 738 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 I++ ++I +IAVTA A+KGD E+ + G + YISKPI + ++KY Sbjct: 739 STIRKLEHTKDIVIIAVTANALKGDREKFLENGMDDYISKPIDTDELEKILRKY 792 >gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 224 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I+GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 62 VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|77022892|ref|XP_888890.1| hypothetical protein CaO19_5181 [Candida albicans SC5314] gi|76573703|dbj|BAE44787.1| hypothetical protein [Candida albicans] Length = 1081 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G E Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994 Query: 116 IKKYI 120 I K I Sbjct: 995 INKCI 999 Score = 33.6 bits (77), Expect = 9.6, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSEL 74 + + RD I G I + RN +A L K D+I+ I +EI K+++ SE+ Sbjct: 762 LDVLRDGIIELGLIPIIVRNIEDA-TLTEPVKYDIIM-------IDSIEIAKKLRLLSEV 813 Query: 75 QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + IP++ V + + G +Y + P S++ I Sbjct: 814 KYIPLVLVHHSIPQLNMRVCIDLGISSYANTPCSITDLASAI 855 >gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D + L + G+ + N +AL+L D++I+DI L+++ Sbjct: 1 MNDKIIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAENFDLMILDIMLEDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E P+I +T+ D+ G + YI+KP + + +K + Sbjct: 61 GFSVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 930 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ EDN++N + + +G +G EAL + D+++MDIQ+ E+ G E Sbjct: 689 TVLLAEDNQVNRLFLKHFLSEAGCEVRLAGSGGEALAQLQNGPVDLVLMDIQMPEMDGTE 748 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ + +PV+A+TA++MKGD ER G + Y+SKP+ + +++ + Sbjct: 749 ATKRIRAGEAGEANKGLPVVALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMRRVL 808 Query: 121 GE 122 Sbjct: 809 DR 810 >gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 753 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/117 (39%), Positives = 75/117 (64%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++ EDN LN +L + LI + G+ + NG+EA+ L + K D++++D+ + + GL Sbjct: 636 KTILVAEDNGLNQELMKLLIRSMGHHCIVVGNGLEAITLLEKEKFDLLLLDMHMPVMDGL 695 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E + I++ L ++PVIA+TA AMKGDEER + GC Y+SKPI + E I++ Sbjct: 696 ETIENIRKSPALSDLPVIALTASAMKGDEERFIEAGCNGYLSKPIDRKLLAEMIERI 752 >gi|254442840|ref|ZP_05056316.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198257148|gb|EDY81456.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 575 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++IVEDN +N + L+E + + NG+EALE D+I MD + ++ G Sbjct: 449 SAKILIVEDNRINQHVIESLLERASHTVHIAANGLEALEKVETDTYDIIFMDCLMPKLDG 508 Query: 62 LEITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 E ++I+ +E P+IA+TA A D E + G + +++KP+ + + + Sbjct: 509 YEAARRIRALPPENGNRETPIIALTANAFAQDRELCFESGMDDFLAKPVKKDTLLGVVNR 568 Query: 119 Y 119 Y Sbjct: 569 Y 569 >gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 241 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED +L D + +GY +G++ L RQH PD+I++D+ L GL Sbjct: 8 HVLVVEDEPRLARLVSDYLVAAGYTTRIVDHGLDVLPAVRQHAPDLIVLDLMLPGRDGLS 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ E+PVI +TA + D + G + YI KP S + +K + Sbjct: 68 LCQELR---RFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARVKAVLRR 123 >gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] Length = 253 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 K++IV+D + KL ++ GY L+ NG +A++L R++ D+IIMDI + E+SG Sbjct: 26 KILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENSDIDLIIMDIMMPEMSGT 85 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E I+E +PV+ +TA + D+ G + ++SKP S + +K I Sbjct: 86 ESCSAIRE---FSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRR 142 >gi|154492193|ref|ZP_02031819.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC 43184] gi|154087418|gb|EDN86463.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC 43184] Length = 372 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 64/114 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D N+ L + +++ GY L T +G +AL +A++ P++I++DI + E+ G E Sbjct: 9 TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIAQERHPNLILLDIMMPEMDGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + +K + E IPVI ++A + + + G Y++KP ++ + Sbjct: 69 VLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122 >gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC 27560] gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC 27560] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + +T Y L +G EAL+ KPD+I++DI + + GL Sbjct: 6 KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKV-ACKPDLILLDINMPGMDGLT 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+E P++ +TA D+ + G + YI KP L I ++ Sbjct: 64 VCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119 >gi|119898702|ref|YP_933915.1| transcriptional regulator [Azoarcus sp. BH72] gi|119671115|emb|CAL95028.1| transcriptional regulatory protein [Azoarcus sp. BH72] Length = 124 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 67/121 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D + + L++ G+ + +G EA+ + R +PD++++D+ + + S Sbjct: 1 MTKKILIADDEQNIVISLEFLMKREGFTVVVATDGDEAVRMIRAEQPDLVLLDVMMPKKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++IK D LQ + ++ +TA + + G +AY++KP S + ++ + Sbjct: 61 GFEVCQEIKADPALQGVRILMLTAKGRDTEVAKGLALGADAYMTKPFSTRDLVARVRSML 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1099 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIET--SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ++++VEDN+ N + ++ +E G NG+ A+E + DVI+MD+Q+ ++ Sbjct: 977 ARILLVEDNQFNAVVAQEELEDAIEGVQVELAENGLIAVEKLKSSTFDVILMDVQMPTMN 1036 Query: 61 GLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E TK I+ E P+IA+TA +K + + + G +I KP + ++ I + Sbjct: 1037 GFEATKAIRNFGNEKAHTPIIAMTANVLKEEVDLCYEAGMNDFIGKPFDTTELLQKIHQL 1096 Query: 120 IGE 122 I Sbjct: 1097 IKR 1099 >gi|325846727|ref|ZP_08169642.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481485|gb|EGC84526.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +D + + + +E +G+ ++ G EAL++A + KP V I+DI L IS Sbjct: 1 MSNKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ I++ + ++ +I V+A + D+ + GC+ YI KP + + ++ + Sbjct: 61 GYEVCDTIRK--KYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5] gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN + G+ A +G+E + + D+II+DI L + G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E +P+I +TA + D+ + G + Y++KP S + IK I Sbjct: 62 ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117 >gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 1018 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN +N ++ L+E G+ T +G +A++ + D+++MD+Q+ E+ G E Sbjct: 764 RVLVAEDNPVNQRVVLRLLEKFGHAVTMTADGRQAVDALSREPFDIVLMDVQMPEMDGFE 823 Query: 64 ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+ + ++A+TA AMKGD ER G + Y+SKP+ S + + Sbjct: 824 ATQVIRRREAGTGRHTLIVAMTAHAMKGDRERCLIAGMDDYVSKPVQRSELTRVLDR 880 Score = 112 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 ++IV+DN N ++ + + G + +G E L+ R ++++D + + Sbjct: 612 ILIVDDNATNRRVLAETVRHWGAKPTCSASGPEGLDELRWAAATGKPFPLVLLDGMMPGL 671 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++I DSEL V+ +T+ +GD R R+ G AY+ KP+ + I Sbjct: 672 DGFSTAERIVGDSELAGTAVLMLTSADRQGDAARCREIGVAAYLVKPVKSAELSRAIAAA 731 Query: 120 IG 121 + Sbjct: 732 LR 733 >gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673] gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML+K+++V+D + L ++ + +G EAL D+ I+DI L +IS Sbjct: 1 MLEKILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I + I+ PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GLSICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY L +G E LEL R+ D+II DI + + Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D+ G + +I+KP S + + + Sbjct: 61 GYDFISEV--QYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 951 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N + ++E SG NG EAL++ + + D+I MD Q+ + G Sbjct: 673 VLLVEDNPVNQDVATAMLECSGCRVSVANNGAEALDVMTRRRFDLIFMDCQMPVMDGYAA 732 Query: 65 TKQIKEDSELQEI-----PVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I++ + +IA+TA AM+GD E G + Y++KP + + + ++++ Sbjct: 733 TRAIRQCEGNSQAGSGRRTIIALTAHAMRGDREECFAAGMDDYLTKPFTQAQLVAVLQRW 792 Query: 120 I 120 + Sbjct: 793 L 793 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 + ++V+DN N+ + + G A N AL L R + D+ I+D+ + E Sbjct: 527 RALLVDDNSTNLSIMHHELHAWGMTADMADNAATALGLMRHAARAESPYDLAILDMLMPE 586 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+E+ + IK + +L + ++ VT+ GDE K G YISKP+ S I Sbjct: 587 MNGIELARAIKANPDLAQTRLLMVTSVGQYGDEAEAVKAGIGCYISKPVRQSRLYSAIID 646 Query: 119 YIG 121 +G Sbjct: 647 LLG 649 >gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I+G Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 61 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19] Length = 2129 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 67/116 (57%), Gaps = 1/116 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K +++V+D+ N+ + E + +G EA+ + ++ ++++MDI + E+ G Sbjct: 2009 KNILVVDDDVRNLFALTTVFERFNINVITAESGKEAINILNENPKIEMVLMDIMMPEMDG 2068 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E T++I+ + + +P+IAVTA AMKGD ++ + G YI+KP+ + + ++ Sbjct: 2069 YETTQKIRREHKNSSLPIIAVTAKAMKGDRQKCIEAGASDYITKPVKIDQLLSLMR 2124 Score = 80.6 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ ++ + +G A+ N +E + + P I +D++L E SG ++ Sbjct: 1744 VLVVEDDLRFGRIIIEKAHENGLKAIVATNYLEVFDFINRFMPIAITLDVKLPETSGWKV 1803 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 ++ D + IP+ ++ + ++ K G ++I KP++ I Sbjct: 1804 IDLLRNDLTYRHIPIHVISG---EENKVLALKRGARSFILKPLNNDIL 1848 Score = 66.3 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 2/113 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IVEDNEL+ + + + EALE D II+D L ++ G Sbjct: 1864 KSILIVEDNELDSSQIAKMHDDEKLLITIAGTAKEALEKVATEDFDCIILDYTLPDMPGQ 1923 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ ++ ++ PVI +A E ++I K + S+ +E Sbjct: 1924 ELLSEV-SKAKKNLTPVIVYSAKDFNKSELNNVNLHSSSHIVKGVNSIEYLLE 1975 >gi|255598170|ref|XP_002536943.1| sensory transduction histidine kinase, putative [Ricinus communis] gi|223518029|gb|EEF25440.1| sensory transduction histidine kinase, putative [Ricinus communis] Length = 262 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++IV+D ++ +L+ +SG+ +G + + A KPD+I++D+++ + G Sbjct: 13 SYRILIVDDTPEQQRILLELLRSSGFNVTLAFDGHQGYQRALSSKPDLILLDVRMARMDG 72 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D+ +IPVI +TA + K G YISKP + I ++ Sbjct: 73 FATCRLLKADAATHDIPVIFLTAAGAPDERINGLKMGGVDYISKPFVPEEVIARINIHL 131 >gi|218256920|ref|ZP_03474405.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM 18315] gi|218225884|gb|EEC98534.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM 18315] Length = 1312 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + L ++ + Y+ + N EAL L Q PD+II DI + + G + Sbjct: 1064 ILVVDDNRDIVWLIKETLSFE-YVVREAFNAEEALALMEQQTPDLIITDIMMPSMDGFAL 1122 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +IK D + IP+I V+A + ++ G +AY++KP S + + + + Sbjct: 1123 ISRIKSDKFTRHIPLIVVSAKVSENEQAEGLDLGADAYLTKPFSSVVLHSVVNRLM 1178 >gi|148240607|ref|YP_001225994.1| CheY-like domain-containing protein [Synechococcus sp. WH 7803] gi|147849146|emb|CAK24697.1| CheY-like receiver domain [Synechococcus sp. WH 7803] Length = 124 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 68/119 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNELN + + G+ +G A+E A +PD+I+MDI L I G + Sbjct: 4 ILLVEDNELNRDMLSRRLTRKGFTVEMAFDGAAAIERANALQPDLILMDIGLPVIDGFDA 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+++K+D + Q IPVIA+TA AM D E GC+ + +KPI L +E I + + Sbjct: 64 TRRLKDDPQTQAIPVIALTAHAMMQDREACLSAGCDDFDTKPIDLPRLLEKINNLLERS 122 >gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++ED + + GY +GM L A PD++++D L ISG Sbjct: 8 SAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++++ +PV+ +TA D G + Y+ KP S+ + I+ Y+ Sbjct: 68 LEICRRLRSTGN--RVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR 125 Query: 122 E 122 + Sbjct: 126 Q 126 >gi|34541418|ref|NP_905897.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis W83] gi|34397735|gb|AAQ66796.1| DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis W83] Length = 961 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ L L+ Y L NG E + LA +H PD+II DI + + G+E Sbjct: 698 TILLVEDNKDI-NLLVKLLLCDRYNVLSAANGKEGIALATEHIPDIIITDIMMPIMDGIE 756 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T ++K+ L IP++A+TA + + D K G +Y+ KP S + I++ + Sbjct: 757 MTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLL 813 >gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 223 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED +++ G++ + +G A +L D++I+D L SGL+ Sbjct: 2 HLLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLPGHSGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +PV+ +TA + + G + Y+ KP L + ++ + Sbjct: 62 LCRRLRA--GGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRR 118 >gi|325273064|ref|ZP_08139372.1| response regulator receiver protein [Pseudomonas sp. TJI-51] gi|324101798|gb|EGB99336.1| response regulator receiver protein [Pseudomonas sp. TJI-51] Length = 121 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 67/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ M +E +G+ L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARVLIVDDSPTEMTSLTQFLEKNGHEVLKANNGADGVALARQEKPDAVLMDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+Q+ +D E IPVI VT + D + G +++KP+ + +K+ +G Sbjct: 61 FQATRQLSKDPETSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVGEEALIAKLKEVLG 120 >gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus maricopensis DSM 21211] Length = 1349 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ +DN L++ + Y +G +A+ A PD+++ D+ + + G + Sbjct: 622 VLLADDNADLRAYVTRLLDDT-YEVHAVTDGEQAVTAAHDRTPDLVLSDVMMPNLDGFGV 680 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ D +PVI ++A A + + G + Y+ KP S + ++ Sbjct: 681 LRALRADERTHAVPVILLSARAGEEARLDGLEAGADDYLVKPFSARELRSRVHTHL 736 >gi|285019533|ref|YP_003377244.1| two-component system regulatory protein [Xanthomonas albilineans GPE PC73] gi|283474751|emb|CBA17250.1| probable two-component system regulatory protein [Xanthomonas albilineans] Length = 237 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E G+ +G++ LA ++ DV+++D+ L + G+E+ Sbjct: 11 VLVVEDNRNISEMIGEYLEGRGFEVDYACDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 71 CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 127 >gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803] gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y +G +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1840 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1720 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1779 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1780 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1837 >gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + ++ GY ++ NG LE+A + + D+I++DI L EI+G Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++++ +IP+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6] gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus CMCP6] gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica RCB] Length = 1053 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 67/116 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D ELN L R+L T+G NG EA+ KPD+++MD Q+ + G Sbjct: 791 ILVVDDIELNRDLMRELFATAGLNIRLACNGREAITAIHSKKPDLVLMDCQMPVMDGFSA 850 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++++ E E+P+IA+TA A+ D E+ G AY++KP++L + I + + Sbjct: 851 TRELRARPEYAELPIIALTAGALDHDREQCLAAGMNAYVTKPVNLEKLLRVIAEQL 906 Score = 59.0 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 6/120 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQ-EI 59 + V+I +DN + + G + +G AL ++D L + Sbjct: 644 RTVLITDDNPFAAQALAAQCQQLGLLTETCPSGESALAALNHPGANYLAALIDWHLPAGL 703 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISKPISLSIFMETIKK 118 G+E K+I+ + +Q P+I ++ + K +A + KP S+ + + Sbjct: 704 DGVETMKRIRSNLGVQAPPLILLS--SQKASGASALDDLPADALLIKPCSVRHLYAALAR 761 >gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium bovis AF2122/97] gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium bovis AF2122/97] gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 253 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED L + G+ +G A+ D +++D+ L I G E Sbjct: 24 RILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ PV+ +TA D GG + Y++KP +L ++ Sbjct: 84 VCARLRRQRVW--TPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140 >gi|83945514|ref|ZP_00957861.1| response regulator [Oceanicaulis alexandrii HTCC2633] gi|83851090|gb|EAP88948.1| response regulator [Oceanicaulis alexandrii HTCC2633] Length = 121 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 79/120 (65%), Positives = 104/120 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+IVEDNELNMKLFRDL+E GY +QT G++AL++AR+HKPD+I+MDIQL E+S Sbjct: 1 MSKKVLIVEDNELNMKLFRDLLEAHGYETVQTSEGLKALDMAREHKPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++TK IK D EL IPV+AVTAFAMKGDEERIR+GGCE Y+SKPI+++ F++T++ ++ Sbjct: 61 GLDVTKWIKNDDELSAIPVVAVTAFAMKGDEERIREGGCEGYLSKPITVASFIKTVRDFL 120 >gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+ + + G+ G + LE PD++++D+ L +SG Sbjct: 1 MTRVLLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASPPDLVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+E ++PV+ ++A D + G + YI KP S + ++ + Sbjct: 61 LEVCRRIRE---TSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++ + E G+ ++ +G++A+E AR+ DVI+MDI + + G Sbjct: 1 MFKILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IK+ + IPV+ ++A + D+ + G + Y+ KP S M + + Sbjct: 61 FSAYKEIKK---TKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVT 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|294646909|ref|ZP_06724530.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|292637854|gb|EFF56251.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1347 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDN+ ++ +E Y ++ +G E A + P++II DI + ++ G+ Sbjct: 1095 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1153 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++IK + + IPVI +TA + + G ++Y+SKP + + M I+K I + Sbjct: 1154 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1213 >gi|293556317|ref|ZP_06674900.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291601517|gb|EFF31786.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] Length = 160 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L+R ++E +G+ + NG +AL+ ++II D+ + E+ G Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ + ++PV+ +TA A D++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLVGSLR--NARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|237745639|ref|ZP_04576119.1| response regulator receiver:Transcriptional regulatory protein [Oxalobacter formigenes HOxBLS] gi|229376990|gb|EEO27081.1| response regulator receiver:Transcriptional regulatory protein [Oxalobacter formigenes HOxBLS] Length = 223 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+EDN+ D +E G+ T +G++AL L D+II+DI L + G Sbjct: 1 MAKILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++++ E PV+ ++A D + G + Y+ KP SL+ I + Sbjct: 61 LDLCRELRARGN--ETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|225386432|ref|ZP_03756196.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme DSM 15981] gi|225047463|gb|EEG57709.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme DSM 15981] Length = 121 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IV+D+ +L + Y + +G EAL + KP+++++D+ L + G Sbjct: 5 QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPDFKPNLVLLDLMLPGMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ S+ +P+I ++A D+ + G + Y+ KP + +K + Sbjct: 65 QVCRELRTSSQ---VPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121 >gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D++ ++L RD +E + + EA + +QH +++DI + +G E Sbjct: 6 TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +S +P++ ++A + D+ R G + YI K S + + +K + + Sbjct: 66 LCRRIRAESP---VPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRS 122 >gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family [Pelobacter carbinolicus DSM 2380] Length = 223 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + + +E + +G E L LA + D+I+MD+ L + GLE Sbjct: 2 RVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ PV+ +TA D G + Y++KP + S + +K + + Sbjct: 62 VIKELRTKDVT--TPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRS 119 >gi|313496636|gb|ADR58002.1| GltR [Pseudomonas putida BIRD-1] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D++ +L D + +GY L +G + + +HK +++++D+ L Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +Q++ L VI ++A D + G + Y++KP + IK + Sbjct: 61 GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284046955|ref|YP_003397295.1| response regulator receiver protein [Conexibacter woesei DSM 14684] gi|283951176|gb|ADB53920.1| response regulator receiver protein [Conexibacter woesei DSM 14684] Length = 134 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 68/117 (58%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +++E + L +E +GY L R+G EAL AR+ PD+ ++D+ + E++G + Sbjct: 7 RILVADNDEDILTLVAFRLERTGYEVLVARDGAEALARAREELPDLCVLDVMMPELTGYD 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T++++ D + IPVI +TA + D +R G +AY+ KP S + + + Sbjct: 67 VTRRLRSDPLTRAIPVILLTARVQEADVDRGFDAGADAYVRKPFSPQELRDRVAAAL 123 >gi|190572846|ref|YP_001970691.1| putative two-component system response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010768|emb|CAQ44377.1| putative two-component system response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E G+ ++G++ LA ++ DV+++D+ L + G+E+ Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 82 CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138 >gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1310 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV++VEDNE+N +L +L+ SG + NG EA+ L D I+MD Q+ + G Sbjct: 944 AKVLLVEDNEINRELAEELLSRSGILFTSATNGQEAISLLGSDDFDCILMDCQMPIMDGY 1003 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ ++ ++IP+IA+TA M D + + G +I+KPI T++ ++ Sbjct: 1004 TATKKIRTMTQYKDIPIIAMTANVMPEDIKYAKASGMNDHIAKPIHFETMFNTLRTWV 1061 Score = 94.8 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQEI 59 VM+V+DN ++ + +E G +G EA++ A ++++D ++ E+ Sbjct: 797 VMVVDDNNSAREVLKASVEALGLSCHTCSSGHEAIQYIASLKASSQPYPLMLIDWKMPEL 856 Query: 60 SGLEITKQIKEDSELQEIP--VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G++ K I ++ + P +I VTA + AY++KP++ S + I Sbjct: 857 DGIDTCKAILAETR-DDTPLTIIMVTAHRQDDARKAGYGLPISAYLTKPVTTSSLFDQI 914 >gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB] gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB] Length = 853 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ +N ++ + ++E G +G EAL+ Q +++MD+Q+ + GLE Sbjct: 732 VLLVEDDPINREVAQMMVEEVGLAIDVAEDGCEALDKVSQTNYALVLMDMQMPRMDGLEA 791 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + +P++A+TA A D ER G ++SKP++ + + +++ Sbjct: 792 TRRIRLLENRKNLPILAMTANAFAEDRERCMAAGMNDFVSKPVNPDLLYAALLRWL 847 >gi|29345776|ref|NP_809279.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29337669|gb|AAO75473.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1420 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN R ++ Y L+ NG EAL + + D II D+ + + G+E+ Sbjct: 1169 ILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++KE + IP + +TA + + G + Y+ KP ++ + I+ + Sbjct: 1228 SRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLARIQNIL 1283 >gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD 2210633] gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|319900357|ref|YP_004160085.1| histidine kinase [Bacteroides helcogenes P 36-108] gi|319415388|gb|ADV42499.1| histidine kinase [Bacteroides helcogenes P 36-108] Length = 1300 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 66/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+DN+ + ++ +G EAL++ R+ PD ++ DIQ+ ++G Sbjct: 1049 RTLLIVDDNKDLTEYLSAALKGCFKETKVAYDGEEALKICRESPPDAVVSDIQMPRMNGY 1108 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ KQIKED ++ IPVI +TA + + K G +AY++KP +++ TI + Sbjct: 1109 ELCKQIKEDLKISHIPVILLTARNDEESQIFGYKNGADAYLTKPFDVNMLYITIHSQL 1166 >gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+I+ED E + ++ G+ +G + LE ++ D++++D+ + + G Sbjct: 1 MTRVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ + +I VTA + D+ + G + Y++KP S + I+ Sbjct: 61 TEVCRQLRQRG---NVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV++V+D L + ++ G+ +G AL++ +++PD I+D+ + + G Sbjct: 8 STKVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ + PV+ +TA D G + Y++KP SL + ++ + Sbjct: 68 FSLLNKLRAKGH--DAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILR 125 Query: 122 E 122 Sbjct: 126 R 126 >gi|289671038|ref|ZP_06492113.1| two-component system response regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 264 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ E L L +++++DI L + G Sbjct: 37 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGH 96 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 97 EVLREIRQ---WSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 153 Query: 123 A 123 A Sbjct: 154 A 154 >gi|284051622|ref|ZP_06381832.1| response regulator receiver Signal transduction histidine kinase [Arthrospira platensis str. Paraca] gi|291570873|dbj|BAI93145.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 369 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 60/116 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+++ED E + +L+E + + NG ++ A +H PD+I+ D+ + E+ G Sbjct: 1 MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVQQAHKHLPDLILCDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + K+++ E IP I +TA A + D G + Y++KP S+ + I Sbjct: 61 YGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIA 116 >gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 15998] gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus NRRL 11379] Length = 1809 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1689 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1748 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1749 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1806 >gi|228990905|ref|ZP_04150869.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM 12442] gi|228768842|gb|EEM17441.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM 12442] Length = 245 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++L + + L+ G EAL + + ++I+DI + + G+E+ Sbjct: 19 ILIVDDDADIVQLIEVHLRQEEFRVLRAYTGGEALNILDINDIQLVILDIMMPAMDGIEV 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E IPV+ ++A A D+ G + YI+KP S+ + +K + Sbjct: 79 CRRIRER---HTIPVMFLSAKATDIDKVIGLSTGADDYITKPFSMMELVARVKAQLRR 133 >gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] Length = 246 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 63/123 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V +VED E L R +E GY G EA ++ PD++++D L +S Sbjct: 1 MSLRVTVVEDEEALGVLLRYNLEAEGYEVEVIARGDEADLRLKEDTPDLLVLDWMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI +++++ + ++PVI +TA + + + G + Y+ KP S+ F +K + Sbjct: 61 GVEICRRLRQRPDTAQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMM 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|315186523|gb|EFU20282.1| response regulator receiver protein [Spirochaeta thermophila DSM 6578] Length = 241 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D E+N++ F ++ G+ + R+G EAL + ++ +PD++++D + ++SG Sbjct: 4 KKILIVDDEEINLEFFEIMLSKLGFEVYKARDGEEALLVMKEQRPDLVLLDNIMPKLSGW 63 Query: 63 EITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+T+ +K++ + + IP++ +A D+ + G E YI+KP + S + I Sbjct: 64 EVTRIVKQEPDYRDVAHIPIVMFSAMDDVRDKIEGFELGVEDYITKPFNFSEVLARINSV 123 Query: 120 IG 121 + Sbjct: 124 LR 125 >gi|297620372|ref|YP_003708509.1| two-component response regulator phoB [Waddlia chondrophila WSU 86-1044] gi|297375673|gb|ADI37503.1| two-component response regulator phoB [Waddlia chondrophila WSU 86-1044] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++++ED E L + + SGY +G+ L + KPD++I+DI L Sbjct: 1 MQKSRLLLIEDEEDIAALIKLQADISGYKLHVEVDGLNGLLAIEREKPDLVILDIMLPGQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ +++K + E ++IPVI ++A + + D + G + Y++KP S I I+ Sbjct: 61 SGLDVCRKLKNNPETKDIPVIMISAKSEELDVVLGLELGADDYVTKPFSPKILFSRIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain./Two component regulator propeller./Bacterial regulatory helix-turn-helix proteins, AraC family./Y_Y_Y domain. [Bacteroides xylanisolvens XB1A] Length = 1465 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKIHLYHPDIVVTDQMMPEMDGLE 1265 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1266 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324 >gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria monocytogenes L99] Length = 237 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY Q +G E L ++ +P ++I+DI + E++ Sbjct: 7 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 66 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++++ L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 67 GLEVCRLMRDNGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 124 Query: 121 GE 122 Sbjct: 125 RR 126 >gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 918 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 68/114 (59%), Gaps = 2/114 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED+E L+E SG+ NG EALE+ + D+I+MD+ + + G+ Sbjct: 796 ILLAEDDETTGFSISRLLEKSGHSVTLAHNGQEALEMHEANNFDLILMDVSMPVMDGIAA 855 Query: 65 TKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++I+ +S +++P+IA+TA+AM GD+E+ G Y++KP+++ M+ + Sbjct: 856 CRRIRGSRNSHKRDVPIIALTAYAMAGDKEKFLAAGMSGYVAKPVTMETLMQMM 909 >gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + + +++ Y + G EAL+ K D+ I+DI L +I G +I Sbjct: 3 ILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIMLPDIDGFQI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQI+ PVI +TA D+ G + YI KP + + +K + Sbjct: 63 LKQIRGKYTF---PVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRR 117 >gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275] gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K ++I++D + +KL I+ +G+ L +G E +E + PD+I++DI + + Sbjct: 1 MTKLSTILIIDDEKDLVKLLGKKIKDNGHEVLVAFDGEEGIEK-SKLNPDLILLDIMMPK 59 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G E+ ++I+++ P+I ++A + D+ R G + YI+KP L + I+ Sbjct: 60 IDGFEVCQKIRDNVV---CPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEA 116 Query: 119 YIGE 122 + Sbjct: 117 NLRR 120 >gi|89899892|ref|YP_522363.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344629|gb|ABD68832.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED+EL + +G+ +G A L ++ D +I+D+ L ++SG Sbjct: 1 MSHLLIVEDDELLRDALGAQLTQAGHTVTPASDGERAQALLESNRFDGVILDLGLPKVSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ + +++ L +PV+ +TA D + G + Y++KP S++ + + Sbjct: 61 MEVLRWLRK--RLPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAMLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB] gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB] Length = 1214 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61 ++++ ED N + RDL+E+ G NG +A+E D+I+MDIQ+ E+ G Sbjct: 960 RILVAEDVPTNQLIMRDLLESLGATVEMADNGEQAIEQLAAAGDDIDLILMDIQMPEMDG 1019 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 LE T +I+ + IP+IA+TA A++ + +R G +++KPI + + I+++ Sbjct: 1020 LEATHRIRTGQKRANIPIIALTAHALEEERQRAAASGMNDFLTKPIEPANLINVIQRW 1077 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEIS 60 V++V+DN L + L++ G L +G AL D I++D+ + ++ Sbjct: 819 HVLVVDDNNLARSVLSSLLKKHGCTVLAAESGEAALAALHASAMTSFDCIMVDLNMPDMD 878 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+ Q +I VT + R G +A + KP++ I + + Sbjct: 879 GLALAQHIRS-ERGQSTKLIMVTGENVHSSRYRHALGDFDAIVEKPVTA----ARIGEVL 933 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + ++++G L NG E + + + D+I++D+ L GL Sbjct: 9 HILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLT 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PVI +TA D + G + Y++KP I+ + Sbjct: 69 LCRNLRA---TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRR 124 >gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L ++ Y + EAL K D+ ++DI + +I G I Sbjct: 3 ILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPDIDGFTI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E PVI +TA + D+ G + YI+KP + +K I Sbjct: 63 LRKIRE---TLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRR 117 >gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 886 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 72/121 (59%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N R L+E G+ +G EA+++A +PD+++MD+ + + G++ Sbjct: 756 RILVAEDDAVNALALRRLLEKIGHAVSVAHDGQEAVDMALAGRPDLVLMDVGMPVLDGVQ 815 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E + L IPVIA+TA AM GD E + G + Y++KP+ +ET+ + + Sbjct: 816 AMRLLREKTGLAGVAAIPVIALTAHAMAGDRENLLAAGMDGYVAKPVDREDLLETMGQVL 875 Query: 121 G 121 G Sbjct: 876 G 876 >gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G AL+ Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ E +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLR--GEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229125247|ref|ZP_04254353.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228658207|gb|EEL13941.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 221 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 +D + L + GY + +G EA+ L + ++++DI + E++G E +I Sbjct: 2 DDEPRMLDLLSLYLTPRGYHCTKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWETCNKI 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +E +P+I +TA D + K G + Y++KP + I+ + Sbjct: 62 RE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 112 >gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K++IV+D++ ++L +E GY + NG EAL PD ++I+D+ + ++ G Sbjct: 2 KILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++++S+ IPV+ ++A D+ + G + Y++KP + M +K + Sbjct: 61 MEVIREVRKESQ---IPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|225851028|ref|YP_002731262.1| response regulator receiver modulated metal dependent phosphohydrolase [Persephonella marina EX-H1] gi|225645278|gb|ACO03464.1| response regulator receiver modulated metal dependent phosphohydrolase [Persephonella marina EX-H1] Length = 354 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D+ N L R + G+ ++ +NG EA++ A + D+I+MD+ + ++ G Sbjct: 7 ATILIVDDDPQNRMLLRFFCKKWGFDVVECKNGAEAVKEANEKDIDIILMDLMMPKLDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + + + IPVI +TA + + G + + +KPI++ +K + Sbjct: 67 SALEVLKNNEKTKYIPVIILTAAEDTESRIKGIELGADDFFTKPINIHELKLRLKNSL 124 >gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU] gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter baumannii 1656-2] gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 319 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032] gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQL 56 M K KV+I++D + ++L ++ G + + L Q +PD++I+DI L Sbjct: 1 MPKLQNKVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G +I KQI+ ++ +P+I ++A + D+ G + YI+KP S + Sbjct: 61 PDGEGYDICKQIR---DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRV 117 Query: 117 KKYIGEA 123 K + + Sbjct: 118 KAQLRRS 124 >gi|78355304|ref|YP_386753.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217709|gb|ABB37058.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 847 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ ED E+N L+ G+ +G+ +EL + H+PD I+MDIQ+ ++ G+ Sbjct: 710 ARILLAEDEEVNRMAATYLLRKMGHTVTAATSGLHVIELLQDHEPDCILMDIQMPDMDGI 769 Query: 63 EITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E TK I+ + + L+ IP+IA+TA AMKGD+E G + YISKPI + + + + Sbjct: 770 ETTKVIRGGQIAGLENIPIIALTAHAMKGDKEIFLAAGMDGYISKPIDAAELQRELYRIL 829 >gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE] Length = 1815 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH +++MDI + E+ G Sbjct: 1695 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1754 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1755 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDSDHLLSVMERWMR 1813 >gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 685 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDNE+N ++ R ++ NG EA+ +A Q D+I MD+ + + GL Sbjct: 562 KILLVEDNEINQEIARAMLRHLDIECDLAHNGREAVHMALQTCYDMIFMDVYMPVMDGLH 621 Query: 64 ITKQIKED----SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ + + +P+IA+TA AM + I G + Y++KP +L I ++ Sbjct: 622 ATREIRRNLPKAPHGKALPIIAMTAVAMPETMDEIMDSGMDDYLAKPFNLVTLRNKIVQW 681 Query: 120 IG 121 +G Sbjct: 682 LG 683 >gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 319 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|163735689|ref|ZP_02143120.1| DNA-binding response regulator [Roseobacter litoralis Och 149] gi|161391117|gb|EDQ15455.1| DNA-binding response regulator [Roseobacter litoralis Och 149] Length = 243 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M+ ++++V+D+ ++ +G A ++ + + + D+I++DI + Sbjct: 1 MMATPPRILVVDDHAEIRHSVTRYLKINGMRATGAKSAADMDAQLKDYTFDLIVLDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GL +++ + Q IP++ +TA D + G + Y++KP + + I Sbjct: 61 GEDGLAACARLRR--QHQSIPILMLTALGEDDDRIKGLDTGADDYLAKPFNPGELLARIN 118 Query: 118 KYIGEA 123 + A Sbjct: 119 AILRRA 124 >gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] Length = 282 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 48 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 107 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 108 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 165 >gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 65/119 (54%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+M+VED++ +L +E GY + +G++A+E + P+++I+DI L ++ G E Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++ ++ ++ +TA MK D+ + G + Y++KP + IK + Sbjct: 66 VAQNLRKLK--PDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRR 122 >gi|332666853|ref|YP_004449641.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335667|gb|AEE52768.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 1368 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 2/116 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + Y ++G+E + A + PD+II D+ + + G + Sbjct: 1115 ILLVEDNPDVAAYLHSCLPE--YRLEFAKDGLEGFDKATELIPDLIISDVMMPRMDGFTL 1172 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ D IP+I +TA A + G +AY+ KP IKK + Sbjct: 1173 CQHLRNDERSSHIPIILLTAKADFESKLTGLDRGADAYLEKPFQPEELRLRIKKLL 1228 >gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 1484 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 ++++IV+D+ N+ ++ G NG E LE+ ++ PD +++MD+ + E+ Sbjct: 1278 RRILIVDDDIRNVFALTHVLGRVGMTVKYAENGREGLEVLHRN-PDVSLVLMDVMMPEMD 1336 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E + I+ L ++P++A+TA M GD E+ G Y+ KP+ + M I + + Sbjct: 1337 GYETIRAIRSTPRLADMPILALTAKVMPGDREKAIDSGANGYVPKPVDVDRLMSAIIELL 1396 >gi|304412088|ref|ZP_07393698.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307305983|ref|ZP_07585729.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304349638|gb|EFM14046.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306911476|gb|EFN41902.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1629 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++VEDN+LN ++ +L+ G + GME + L + D++IMD+Q+ ++ G Sbjct: 1287 TILVVEDNQLNRQVIDELLSYEGANVVLAEGGMEGVSLVLESGDLFDIVIMDMQMPDMDG 1346 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE T++I+ D +P++A+TA A + D + G ++ KPI + + + +I + +G Sbjct: 1347 LEATRRIRADERFAALPILAMTANASQSDRQECLNAGMNDHVGKPIDMPLLLPSILRLVG 1406 Query: 122 E 122 Sbjct: 1407 R 1407 Score = 105 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DNEL +++ ++ G G AL +Q DV++MD ++ + Sbjct: 1142 RVLVVDDNELTVEILEKILTGFGCEVETALGGYSALAKVKQSHEKSTPFDVVLMDWRMPD 1201 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMK--GDEERIRKGGCEAYISKPISLSIFMET 115 + GL+ + ++ + P V+ +TA+ + + ++IR +++KP++ I E Sbjct: 1202 LDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAESQQIRHVPFVNFLTKPVTSQILAEA 1261 Query: 116 IKKYI 120 + I Sbjct: 1262 VLNAI 1266 >gi|295085039|emb|CBK66562.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) [Bacteroides xylanisolvens XB1A] Length = 942 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 697 VLVIDDNADIRSYVRGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 755 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 756 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 811 >gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|317479492|ref|ZP_07938623.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|316904312|gb|EFV26135.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 1347 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVEDN+ + R + Y NG EAL + +++ P+++I DI + E+ G Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRGD 1142 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ +K D E IP+I +TA + + G + YI KP ++ I I + Sbjct: 1143 ELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLTN 1202 Query: 122 EA 123 A Sbjct: 1203 RA 1204 >gi|270293538|ref|ZP_06199740.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275005|gb|EFA20865.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1347 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVEDN+ + R + Y NG EAL + +++ P+++I DI + E+ G Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRGD 1142 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ +K D E IP+I +TA + + G + YI KP ++ I I + Sbjct: 1143 ELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLTN 1202 Query: 122 EA 123 A Sbjct: 1203 RA 1204 >gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE + D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRSEGHT--VPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 244 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K+++V+D++ ++L + GY + NG +AL PD ++I+D+ + E+ G Sbjct: 17 KILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNT-TPDIGLVILDLMMPEMDG 75 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K+I++DS IP++ ++A D+ + G + Y++KP + M ++ + Sbjct: 76 MEVIKRIRKDS---SIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 132 Query: 122 EA 123 + Sbjct: 133 RS 134 >gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1465 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDM-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1265 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1266 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324 >gi|255654521|ref|ZP_05399930.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-23m63] gi|296449247|ref|ZP_06891033.1| response regulator [Clostridium difficile NAP08] gi|296880778|ref|ZP_06904727.1| response regulator [Clostridium difficile NAP07] gi|296261916|gb|EFH08725.1| response regulator [Clostridium difficile NAP08] gi|296428225|gb|EFH14123.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + L D ++ G+ L +G +E +++PD+II+DI + ++ G Sbjct: 1 MSKILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIE-LSKNEPDLIILDIMMPKMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I++D P+I ++A + D+ + G + Y++KP L M I+ + Sbjct: 60 FEVCQAIRDDVL---CPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|212696240|ref|ZP_03304368.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM 7454] gi|212676869|gb|EEB36476.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM 7454] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I +D + + + +E +G+ ++ G EAL++A + KP V I+DI L IS Sbjct: 1 MSNKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ I++ + ++ +I V+A + D+ + GC+ YI KP + + ++ + Sbjct: 61 GYEVCDTIRK--KYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family [Cyanothece sp. ATCC 51142] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + ++ GY +G + ELA Q+ D++I+D L GL Sbjct: 2 KILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTYDLLILDWMLPRKPGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ S+ + PV+ +TA D G + Y+ KP L M ++ + + Sbjct: 62 ICQELR--SQGKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRRS 119 >gi|160888763|ref|ZP_02069766.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492] gi|156861662|gb|EDO55093.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492] Length = 1390 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVEDN+ + R + Y NG EAL + +++ P+++I DI + E+ G Sbjct: 1127 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIVKEYMPNLVISDIMMPEMRGD 1185 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ +K D E IP+I +TA + + G + YI KP ++ I I + Sbjct: 1186 ELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLTN 1245 Query: 122 EA 123 A Sbjct: 1246 RA 1247 >gi|119487928|ref|ZP_01621425.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455504|gb|EAW36642.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 363 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++IV+D N + + Y +G++AL+ KPDVI++D+ + E+ G+ Sbjct: 4 AKILIVDDEPNNFDVIEAQLLEEPYELSYASSGIKALQRLPLFKPDVILLDVMMPEMDGV 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++IK D + IP++AVTA K + R +GG + +ISKP S I+ + Sbjct: 64 KVCQKIKSDPQWSHIPIVAVTALNSKQEMARCLEGGADDFISKPASSIELRARIRSMLR 122 >gi|91786119|ref|YP_547071.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695344|gb|ABE42173.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 240 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 1/123 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED+ + + + SGY +G L + PD++I+D+ L ++ Sbjct: 1 MTQQLLMIEDDSRLAAMVGEYLRQSGYGFTHAADGASGLAALQASPPDLVILDLMLPDMD 60 Query: 61 GLEITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++IK SE V+ +TA D + G + Y+ KP + I+ Sbjct: 61 GLEVCRRIKSQGSESAHTAVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|78046443|ref|YP_362618.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|166710712|ref|ZP_02241919.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575358|ref|YP_001912287.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|194364430|ref|YP_002027040.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|289663571|ref|ZP_06485152.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670959|ref|ZP_06492034.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325917339|ref|ZP_08179557.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325926570|ref|ZP_08187886.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|78034873|emb|CAJ22518.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|188519810|gb|ACD57755.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|194347234|gb|ACF50357.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|325536473|gb|EGD08251.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325543078|gb|EGD14525.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 237 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E G+ ++G++ LA ++ DV+++D+ L + G+E+ Sbjct: 11 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 71 CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 127 >gi|303325918|ref|ZP_07356361.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] gi|302863834|gb|EFL86765.1| sensor histidine kinase/response regulator [Desulfovibrio sp. 3_1_syn3] Length = 954 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 71/117 (60%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DNE+N ++ ++L+E +G NG EA+E R+ +++MD+Q+ + GLE Sbjct: 600 VLVVDDNEINRQIAKELLEQAGLAVTVVGNGREAVEYVRRQPVSLVLMDVQMPVMDGLEA 659 Query: 65 TKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+E E+P++A+TA A KG + G Y++KP++ + +++++ Sbjct: 660 TCRIRELGRSPEELPILAMTAHADKGSRMDGKSVGMNDYLTKPVNPAELYAALEEWL 716 >gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] Length = 242 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + Y+ KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRS 124 >gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4] gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++++D+ L + + G+ L T +G + L D+I++D+ + ++G Sbjct: 1 MTRVLLIDDDLEFTGLLCEYLTDEGFDVLSTDDGAKGLAFVDSGATDIIVLDVMMPIMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ + I++ SE IP++ +TA D G + Y+SKP S + ++ + Sbjct: 61 VDVLQNIRKSSE---IPIVMLTARGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] Length = 223 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ ++I+ED + + +L+ +GY +G+E L + +I++DI + +I Sbjct: 1 MIDNILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIMMPKID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I+++S +IP+I +TA + + + + + YI+KP SL + + I+ + Sbjct: 61 GYAVCEIIRKNS---DIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|16118480|gb|AAL14442.1|AF370885_4 AdeR response regulator [Acinetobacter baumannii] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129 >gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + + L L+ GY + +G E+LE+ +K D+ I+D+ L +ISG Sbjct: 1 MAKILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVMLPDISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + I+E PV+ +TA D+ G + YI KP + + +K + Sbjct: 61 FDVLQSIREKQFF---PVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316] gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515] Length = 223 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + L++ Y NG EAL+ + DVII+D+ + ++ G Sbjct: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K ++ ++ ++ ++ +TA D G + Y+ KP M I+ + A Sbjct: 62 FLKLLR--NKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRA 119 >gi|332526668|ref|ZP_08402770.1| histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332111071|gb|EGJ11103.1| histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 598 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N + +++++ G ++ +G +ALE + D+++MDIQ+ + G E Sbjct: 479 RVLLVEDNPVNRLIAAEMLKSCGLDVVEAEDGQQALETIDREHFDLVLMDIQMPVLDGYE 538 Query: 64 ITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+E L +P++A+TA A D G +A++SKP + +K+++ Sbjct: 539 ATQRIREREARLRLARVPIVALTANAFDEDAALSLAAGMDAHLSKPYTREQLRALLKQWL 598 >gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED+E L + ++ Y +Q +G +ALE + +II+D+ L I G+E Sbjct: 5 KILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKY-DNTFQLIILDLMLPYIDGIE 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E+S +PVI ++A + D G + Y+ KP S +K + Sbjct: 64 VLRKIRENS---TVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRR 119 >gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 1188 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++ ED+ N+ ++E G RNG EALE +I+MDI + E+ G Sbjct: 1067 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDG 1126 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +I+ + +P+IA+TA AM D R + G + Y+SKPI + + + ++ Sbjct: 1127 LTAMGEIRRNPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1186 Query: 122 E 122 + Sbjct: 1187 Q 1187 Score = 91.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ ++ RDL + + + L L R +P +++D+ L + SGL + Sbjct: 801 IVAVEDDLAFAEILRDLTHELDFDFVHASDAASGLALVRDMRPAAVLLDVGLPDRSGLTV 860 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +K D + IP+ V+A ++ G Y KP + I++ Sbjct: 861 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARGTMEAAIRRL 912 Score = 77.1 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 46/94 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + R L+++ + EAL + D ++ D+ L + +G Sbjct: 921 KRVLVIEDDAPMRESIRALLQSENTEIVAVATLAEALAYLAKVTFDCVVTDLALPDGTGY 980 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ ++ +PVI T + DEE + Sbjct: 981 DLLERLATNTVHVSLPVIVYTGRMLSDDEEHRLR 1014 >gi|307154499|ref|YP_003889883.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7822] gi|306984727|gb|ADN16608.1| response regulator receiver modulated GAF sensor protein [Cyanothece sp. PCC 7822] Length = 315 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ L + +E GY + ++G E L + +PD++++D + E+ G Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYRVVTAKDGEECLNEYNRCQPDMVLLDAVMPEMDGFSC 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K++ E S+ IP++ +TA + ++ G YI+KPI ++ + +K+ + Sbjct: 75 CKRLTEISQGHNIPILMITALDDQDSIDQAFACGAVDYITKPIHWAVLAQRVKRLL 130 >gi|153869802|ref|ZP_01999327.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152073730|gb|EDN70671.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 151 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I +D+ +N+K + + L NG L++A Q PD+I++D+ + I G Sbjct: 7 TILIADDSLINIKFLLYYLTNKVEFRVLVANNGKSVLQIASQANPDLILLDVMMPGIDGF 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ +Q+K + ++IP+I +TA D+ + + G YI+KP+ + + + Sbjct: 67 QVCEQLKSEEHTRDIPIIFMTALDKTEDKIKAFRLGAADYITKPLQPEELLARVTTQL 124 >gi|26987013|ref|NP_742438.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24981631|gb|AAN65902.1|AE016218_4 DNA-binding response regulator GltR [Pseudomonas putida KT2440] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D++ +L D + +GY L +G + + +HK +++++D+ L Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +Q++ L VI ++A D + G + Y++KP + IK + Sbjct: 61 GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|253571901|ref|ZP_04849306.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251838498|gb|EES66584.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 885 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DNE L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 640 VLIIDDNEDIRSYVHTLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 698 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 699 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 754 >gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 1464 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1264 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA + + + G AYI+KP S + I + + E Sbjct: 1265 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323 >gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 1096 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ V+D +N+++ ++++ GY RNG EAL Q +PD+I++D+ + +SGL++ Sbjct: 702 ILAVDDEPINLQVLQNVLLPQGYRITTARNGSEALRSVAQERPDLIVLDVMMAGLSGLDV 761 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ L E+P+I +TA D + G Y+ KP + I+ + Sbjct: 762 ARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLL 817 >gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 5/124 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M +K V+I+ED + K ++ Y + T +G+ L R+ PD++++D+ L Sbjct: 1 MDRKPLVLIIEDEKEIAKFIDLELQAESYETVVTYDGVTGLSKFRELNPDLVVLDLMLPV 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ +++++ P+I +TA D+ G + Y+ KP S+ + ++ Sbjct: 61 LDGLEVARRVRK---TSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRA 117 Query: 119 YIGE 122 ++ Sbjct: 118 HLRR 121 >gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++E +I +TA D+ + G + YI+KP S + I+ + Sbjct: 64 LEVCKAIRKENEKMG--IIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 1 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 61 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 242 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 ++++VED + + D + +GY +G AL+ PD+ ++D+ L I G Sbjct: 5 ARILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q + ++ P++ +TA + D + G + YI KP S + +K + Sbjct: 65 LEVLRQARRHTDN---PIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1572 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 71/118 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++ EDN+LN +L +L+ ++G + NG E L+ Q + D ++MD Q+ + G Sbjct: 1232 AKLLVAEDNDLNQELIVELLSSNGITPVLANNGQEVLDFLEQEQFDGVLMDCQMPIMDGY 1291 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+++ + + +PV+A+T AM GD ER + G +I KPI++ TI K++ Sbjct: 1292 TATRRIRDNEQFEHLPVLAMTENAMAGDRERALESGMNDHIPKPINVDELFTTIAKWV 1349 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEIS 60 +V++VEDN + ++ ++ + +G+EA+ + + + ++D ++ ++ Sbjct: 1086 RVLLVEDNANSREILLAMLASLNVQVECAEDGVEAVAMLKASEASPYQLALLDWKMPKLD 1145 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G+ + K IK+ E V+ VTA+ + +A ++KP++ S + + Sbjct: 1146 GIGVAKFIKQLPESITPHVVMVTAYGKEELLLDAVDVPIDAVLTKPVTQSTLWDAL 1201 >gi|254472023|ref|ZP_05085424.1| DNA-binding response regulator [Pseudovibrio sp. JE062] gi|211959225|gb|EEA94424.1| DNA-binding response regulator [Pseudovibrio sp. JE062] Length = 242 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++IV+D+ + + + + A ++ + D++++DI + G Sbjct: 5 TAHILIVDDHRDIRESLARYLTKNNMRTTVAESAAAARKVLKNSSIDLVVLDIMMPGEDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + + E + PVI +TA A D + G + Y++KP + + I+ + Sbjct: 65 LSLCRHL---VETNQAPVILLTAMAEDTDRVVGLEIGADDYVTKPFNPRELLARIRAVLR 121 Query: 122 EA 123 A Sbjct: 122 RA 123 >gi|217975276|ref|YP_002360027.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217500411|gb|ACK48604.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1629 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++VEDN+LN ++ +L+ G + GME + L + D++IMD+Q+ ++ G Sbjct: 1287 TILVVEDNQLNRQVIDELLSYEGANVVLAEGGMEGVSLVLESGDLFDIVIMDMQMPDMDG 1346 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE T++I+ D +P++A+TA A + D + G ++ KPI + + + +I + +G Sbjct: 1347 LEATRRIRADGRFAALPILAMTANASQSDRQECLNAGMNDHVGKPIDMPLLLPSILRLVG 1406 Query: 122 E 122 Sbjct: 1407 R 1407 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DNEL +++ ++ G G AL +Q DV++MD ++ + Sbjct: 1142 RVLVVDDNELTVEILEKILTGFGCEVETALGGYSALAKVKQSHEKSTPFDVVLMDWRMPD 1201 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMK--GDEERIRKGGCEAYISKPISLSIFMET 115 + GL+ + ++ + P V+ +TA+ + + ++IR +++KP++ I E Sbjct: 1202 LDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAESQQIRHVPFVNFLTKPVTSQILAEA 1261 Query: 116 IKKYI 120 + I Sbjct: 1262 VLNAI 1266 >gi|160877439|ref|YP_001556755.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160862961|gb|ABX51495.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315269641|gb|ADT96494.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1629 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++VEDN+LN ++ +L+ G + GME + L + D++IMD+Q+ ++ G Sbjct: 1287 TILVVEDNQLNRQVIDELLSYEGANVVLAEGGMEGVSLVLESGDLFDIVIMDMQMPDMDG 1346 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE T++I+ D +P++A+TA A + D + G ++ KPI + + + +I + +G Sbjct: 1347 LEATRRIRADERFAALPILAMTANASQSDRQECLNAGMNDHVGKPIDMPLLLPSILRLVG 1406 Query: 122 E 122 Sbjct: 1407 R 1407 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DNEL ++ ++ G G AL +Q DV++MD ++ + Sbjct: 1142 RVLVVDDNELTTEILEKILTGFGCEVETALGGYAALAKVKQSHEKSTPFDVVLMDWRMPD 1201 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMK--GDEERIRKGGCEAYISKPISLSIFMET 115 + GL+ + ++ + P V+ +TA+ + + ++IR +++KP++ I E Sbjct: 1202 LDGLQTAEMLRNSDANNQTPLVVMLTAYGHEVIAESQQIRHVPFVNFLTKPVTSQILAEA 1261 Query: 116 IKKYI 120 + I Sbjct: 1262 VLNAI 1266 >gi|150017636|ref|YP_001309890.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] gi|149904101|gb|ABR34934.1| response regulator receiver protein [Clostridium beijerinckii NCIMB 8052] Length = 156 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED ++ ++ D + GY L+ +G +ALEL + + +++I+DI L +I G Sbjct: 1 MNKILVVEDEDILREVIVDYLIEDGYQVLEAADGEKALELFQSNSVELVILDIVLPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++I+++S IP+I +TA + + D + G + Y+ KP S I M +K+++ Sbjct: 61 WSVCRRIRKNS---SIPIIMLTARSDEDDSLMGYELGADDYLIKPYSPRILMVKVKRFL 116 >gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED L ++ +G+ + A EL Q + D++++D L + Sbjct: 1 MNKTRILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRHDLLLLDWMLPDG 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ +++ +P+I +TA + D+E G + Y++KP S + I Sbjct: 61 DGVSWIAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHAR 120 Query: 120 IG 121 + Sbjct: 121 LR 122 >gi|329913505|ref|ZP_08275963.1| twitching motility protein PilH [Oxalobacteraceae bacterium IMCC9480] gi|327545323|gb|EGF30563.1| twitching motility protein PilH [Oxalobacteraceae bacterium IMCC9480] Length = 121 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 57/116 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ D++ +G+ NG EAL + KP +I+MD+ + +G + Sbjct: 5 KILIVDDSPTERYFLTDVLVKNGFSVATAENGEEALLKIKADKPQLILMDVVMPGQNGFQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +T+ I D E Q++P+I T+ + D + G YI KP+ + I Sbjct: 65 VTRAISRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPQELLAKIAAL 120 >gi|255526636|ref|ZP_05393542.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186096|ref|ZP_06854501.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509669|gb|EET86003.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049364|gb|EFG88793.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED++ +L + ++ +GY NG ALE+ Q D+I++D+ + E++G Sbjct: 1 MFKILVVEDDKSQARLMKAILSHAGYEIHLAHNGTIALEILDQVHIDLIVLDVMMPEMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I++ + IP++ +TA + D+ R + G + Y++KP + IK + Sbjct: 61 YEFTETIRKSGNM--IPILMLTAKQLTTDKIRGFQSGTDDYMTKPADEEELLWRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + +IVED + R ++E GY +G L A + DVI++D L +SG + Sbjct: 2 RALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGFD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + KQ++ + PV+ +TA D + G + Y+ KP + ++ I A Sbjct: 62 LLKQLRTK---KSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRA 118 >gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353] gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353] Length = 248 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D + L ++ Y+ + +A+ D+ I+DI L +++ Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I++ P+I +TA + D+ G + Y++KP + +K + Sbjct: 78 GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134 Query: 121 GE 122 Sbjct: 135 RR 136 >gi|150003719|ref|YP_001298463.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] gi|149932143|gb|ABR38841.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides vulgatus ATCC 8482] Length = 1327 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN + + +++ Y +G +A + H+ D+II D+ L +I+G E Sbjct: 1077 TLLLIDDNAELLYIMKEMF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1135 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IK D IPVI +TA D G + YI+KP + + + I Sbjct: 1136 LCTRIKSDLRFNHIPVIILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1193 >gi|126738480|ref|ZP_01754185.1| response regulator [Roseobacter sp. SK209-2-6] gi|126720279|gb|EBA16985.1| response regulator [Roseobacter sp. SK209-2-6] Length = 423 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ L ++ ++ G+ ++ +G A+E+ Q PD+I+ D + +SG+E Sbjct: 20 RVLVVDDSRLQRRILVASLKKWGFEVIEADSGEAAMEICLQESPDLILSDWMMPGMSGIE 79 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKYI 120 + ++ S+ I +T+ + K + G + +++KP+S I ++ + Sbjct: 80 FCQAFRQRSKDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERIL 139 Query: 121 G 121 Sbjct: 140 R 140 >gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+MIVED+ ++ ++ Y + NG +AL L D++++D+ + +SG Sbjct: 1 MSKIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++ + PVI +TA D+ G YI+KP ++ + I+ + Sbjct: 61 LEVLRRYR--MRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALR 118 >gi|317490823|ref|ZP_07949259.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920370|gb|EFV41693.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +VED +E+ G+ G+ LE+ + KPD++I+D+ L +I+ Sbjct: 1 MSPTIWLVEDESSIADTLIYTLESEGFTVCWFERGLPVLEMMTEKKPDLVILDVGLPDIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I ++ ++PV+ +TA + D + G + Y++KP S ++ + Sbjct: 61 GFELCRKI--LTQSPDLPVLFLTARNDEVDRLIGLEIGADDYVAKPFSPREVCARVRTIL 118 Query: 121 GEA 123 + Sbjct: 119 RRS 121 >gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + +E +GY+ R+G+E LA + + ++++D+ L I G Sbjct: 2 RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVMLPGIDGFT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + +PV+ +TA D + + G + Y+ KP S S + ++ + Sbjct: 62 VLQAIR---RTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRR 117 >gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] Length = 228 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL D + + Y ++ NG EAL++ + K +II+D+ + ++ G Sbjct: 9 KILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDKDIALIILDVMMPKMDGW 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +I+ +S+ +P+I +TA + DE + + G + YISKP S I + I Sbjct: 69 EVCAEIRRNSK---VPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRR 125 >gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1149 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 68/115 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ + L + GY +NG+EA+ + +++ +++ MDIQ+ E+ GLE Sbjct: 1016 RILLAEDNVINQKVAKRLFKKMGYEISVAQNGLEAVAMIGENEFELVFMDIQMPEMDGLE 1075 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T++I + + +IA+TA AM+ D E G + Y++KP L + I K Sbjct: 1076 ATREIIKRWPSERPRIIALTANAMREDRENCFAAGMDGYLTKPFKLDDLKDVIAK 1130 >gi|148977298|ref|ZP_01813912.1| probable transcriptional regulator SyrB [Vibrionales bacterium SWAT-3] gi|145963411|gb|EDK28675.1| probable transcriptional regulator SyrB [Vibrionales bacterium SWAT-3] Length = 222 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V++V+D+ +L +++E GY G ALE + + D++++D+ L +S Sbjct: 1 MMSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGEAALEFIQSNPVDLVLLDVMLPNLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ ++I + P++ +TA + G + YI+KP ++ + IK + Sbjct: 61 GIQVARRICQRFAT---PILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|325298170|ref|YP_004258087.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] gi|324317723|gb|ADY35614.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] Length = 236 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED E + +D +E G+ NG E +E KPDV++ D+ + + G E+ Sbjct: 10 VLLVEDEETLALIIKDTLEGQGFAIRLAENGEEGIEKFFGQKPDVVVADVMMPRMDGFEM 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ ++ PV+ +TA + D + G Y+ KP + + IK +G A Sbjct: 70 VRRIRRKD--KQTPVLFLTARSATSDVVEGFELGGNDYLKKPFGMQELIVRIKALLGRA 126 >gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 224 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L + G+ ++ +G EAL + D++++DI + + G Sbjct: 1 MPTILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIMMPTMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K++++ + ++P++ +TA ++ + + G + Y++KP +K + Sbjct: 61 WTLCKELRKMNT--DLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|298241004|ref|ZP_06964811.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554058|gb|EFH87922.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 63/116 (54%), Gaps = 3/116 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED + + +GY ++ +G A+EL +HKPD+ I+D+ L ++SGL++ Sbjct: 3 VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFEEHKPDLAIIDLNLPKMSGLDV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K I+ +P++ VTA DE + G + YI KP + ++ + ++ + Sbjct: 63 CKAIR---TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115 >gi|294055631|ref|YP_003549289.1| two component transcriptional regulator, winged helix family [Coraliomargarita akajimensis DSM 45221] gi|293614964|gb|ADE55119.1| two component transcriptional regulator, winged helix family [Coraliomargarita akajimensis DSM 45221] Length = 233 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 65/119 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +L + +E GY + + + AR ++PD++I+DI + E++GL+ Sbjct: 8 RILVVDDEPDVTELLKYKLEQEGYQCEVLNDPLAFVGRARDYQPDLMILDIMMPELNGLQ 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + + D ++++P++ +TA D + + G + Y+SKP + M + K + Sbjct: 68 LCRIARSDPAIKDVPIVFLTARGEAEDRIKGLEIGADDYVSKPFNTKELMLRVGKVLNR 126 >gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I ED + SG+ +G + L+ A D++I+D+ L + G Sbjct: 1 MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDRDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I K+++ E +P+I +TA D+ + G + Y++KP + + ++ + Sbjct: 61 FQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLR 118 >gi|254881051|ref|ZP_05253761.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] gi|254833844|gb|EET14153.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 4_3_47FAA] Length = 1327 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN + + +++ Y +G +A + H+ D+II D+ L +I+G E Sbjct: 1077 TLLLIDDNAELLYIMKEMF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1135 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IK D IPVI +TA D G + YI+KP + + + I Sbjct: 1136 LCTRIKSDLRFNHIPVIILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1193 >gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603] gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621] gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621] gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603] gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 61 GLQVLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|256821208|ref|YP_003142407.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256799188|gb|ACV29842.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 227 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED+E + L +E YI + + +AL+ ++ + D+ I+DI L + Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKRATSSEQALKYIKEKEFDLAILDIMLPGEN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I +I+E P+I +TA + + + G + Y++KP + +K + Sbjct: 61 GYYICAKIRESYNY---PIIMLTAKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis ATCC 25486] Length = 1150 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 + V++V+D+ N+ +L+E G + NG +EL R +H +++MD+ + G Sbjct: 1028 RTVLVVDDDTRNVFALTELLEHEGVHVITADNGRTGIELVRTRHDIGLVVMDVMMAGTDG 1087 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I++ ++P+I VTA AM GD G + Y+SKP+ + I+ ++ Sbjct: 1088 YSAMQAIRKLPHAADVPIIVVTAKAMAGDRAEALAAGADDYVSKPVDTDRLVAKIRLWLE 1147 Query: 122 E 122 + Sbjct: 1148 Q 1148 >gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ L NG EAL++ + + I+DI + + G+E+ Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + + GY ++ NG LE+A + + D+II+D+ L EI+G Sbjct: 1 MVKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++I++ + E+P+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRIRK---VSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|332828824|gb|EGK01516.1| hypothetical protein HMPREF9455_02349 [Dysgonomonas gadei ATCC BAA-286] Length = 1442 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I++DN+ D ++ +G + L+ A + PD+II D+ + + G E Sbjct: 1191 KMLIIDDNDDIRNFLIDEFSKY-FMVEVAEDGQKGLQKAIEINPDLIICDVMMPAMDGFE 1249 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+++KED + IP+I +TA + + + G +AYI KP SL + + K I + Sbjct: 1250 VTRRLKEDFQTCHIPIILLTAHSSIEHQLEGIQSGADAYIMKPFSLKYLVTRVFKLIEQ 1308 >gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 231 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED ++ D + G++ +G EA +Q PD +I+D+ L GL I Sbjct: 7 VLVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLMLPGKDGLSI 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K +++ +P+I +TA + D G + Y+ KP S + ++ + A Sbjct: 67 CKDVRK---FSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRA 122 >gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family [Odoribacter splanchnicus DSM 20712] Length = 229 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++VED+ + + +E S Y NG + LE R+ K D+ ++D+ + E+ Sbjct: 1 MAQKILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFRKDKFDICLLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E +P + +TA +MK D ++ + G + YI KP + + IK + Sbjct: 61 GFTLGKKIREIDG--NVPFVYITAKSMKEDMKQGYEIGADDYIVKPFDSEVLILKIKAIL 118 Query: 121 GEA 123 + Sbjct: 119 SRS 121 >gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAEGL--PVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1155 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KK+++++D+ N+ +++E G L +NG E + L + D+I+MDI + E+ G Sbjct: 1035 KKILLIDDDMRNVFALMNVLEEKGMKVLVGKNGKEGIFLLEDNPDVDLILMDIMMPEMDG 1094 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E K+I++ ++ + P+IA+TA AM GD + + G Y+SKPI + ++ ++ Sbjct: 1095 YEAMKEIRKQNKFKLTPIIALTAKAMVGDRSKCIEAGASDYLSKPIDTDKLLSLLRVWL 1153 Score = 110 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I+ED+ + DL G+ +G L+ A +++P II+D+ L +I G + Sbjct: 769 VLIIEDDPRFSAILVDLAGGKGFHVYTAADGETGLQFALKYRPSAIILDVGLPDIDGWAV 828 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 +++K + E + IPV ++A+ D + G Y++KP+S+ + Sbjct: 829 MERLKGNPETRHIPVHFISAYDSGLD---AMRMGAIGYLTKPVSMEVL 873 Score = 92.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+EL + +LI + +G EA EL R D I++D+ L+++SG Sbjct: 889 KKLLVVEDDELQQRSILELIGEGDVMTTAVGSGYEAFELLRTGNFDCIVLDLGLRDMSGF 948 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 ++ ++I+ + IPVI T + +EE I E+ I K + S ++ Sbjct: 949 DLLEKIRNHDAISHIPVIIYTGKDLTKEEEAILSEHAESIIIKGVKSPERLLD 1001 >gi|197337852|ref|YP_002157772.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11] gi|197315104|gb|ACH64553.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11] Length = 221 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ L +++++ GY G ALE + H D++++D+ L ++ G Sbjct: 1 MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHSIDLVLLDVMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I + P++ +TA + + G + +I+KP ++ + I + Sbjct: 61 YQVARRICQRFAT---PILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED+ + + GY NGM+ L++AR PD++I+D L IS Sbjct: 1 MNDHILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPVIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ E P+I +TA D G + Y++KP S+ + +K + Sbjct: 61 GLDLCLRLRKTGM--EAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|158337064|ref|YP_001518239.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158307305|gb|ABW28922.1| two-component response regulator [Acaryochloris marina MBIC11017] Length = 363 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 61/119 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+++ED + + +++ + ++ +G + LA++ PD++I DI + E G Sbjct: 1 MSKVLVIEDQDDIRSIVCEILIAESFNVIEAEDGHIGVLLAQEEMPDLVICDIMMPEFDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + Q++++ LQ +P I +TA A K D + G Y++KP + + + I Sbjct: 61 YSVMTQLRQNPYLQSVPFIFLTAKASKTDLRLGMELGANDYLTKPFTRDELLGAVNAQI 119 >gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus XylebKG-1] Length = 1821 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1761 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1818 >gi|326404574|ref|YP_004284656.1| putative two-component response regulator [Acidiphilium multivorum AIU301] gi|325051436|dbj|BAJ81774.1| putative two-component response regulator [Acidiphilium multivorum AIU301] Length = 239 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ +L +E + R+ EA ++++D+ L SG Sbjct: 4 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + ++ +S+ +P+I +TA + D + G + Y++KP + + I+ + Sbjct: 64 IDFARWLRGESQ---VPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 230 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++I +D L + +E GY + +G EAL++ + ++D+ + E+ Sbjct: 1 MMDKILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKILAGGDISLCLLDVMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K++++++ IPVI ++A D+ G + Y+ KP + + ++ + Sbjct: 61 GFHVLKEMRKNN---NIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ VED+++ + + +E G++ +G+ LE R +PD+ ++D+ + + G+ Sbjct: 5 HVLFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP ++ + I+ + Sbjct: 65 LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120 >gi|239787643|emb|CAX84111.1| Sensor protein [uncultured bacterium] Length = 1221 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEIS 60 + +++ EDNE+N ++ + ++ G +G+ AL DV++MDI + + Sbjct: 864 RHILLAEDNEINQEIAQAILSGEGAAVRIAADGVAALSAVESSDRPFDVVLMDIHMPVMD 923 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E T +I+ ++P+IA+TA AM + E+ G +I+KPI + + T+ +++ Sbjct: 924 GYEATSRIRAIPAHADLPIIAMTASAMVEEREKCLAVGMNDHIAKPIDVGQMLSTLDQWM 983 Query: 121 G 121 Sbjct: 984 R 984 Score = 95.6 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEIS 60 ++ +IV+D L+ + RD++ G ++G AL DV+++D + + Sbjct: 719 RRALIVDDLALSCDVLRDVMTNFGLSVTTVKSGQAALAELTTTASPFDVVLLDWHMPGMG 778 Query: 61 GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + I+ + ++ +P V+ VT F + + +R + + KPI S+ +E+I Sbjct: 779 GAELIRNIRGNPQVASVPLVLMVTPFGQEEALDGMRDLELDGLLVKPILPSVLLESILGA 838 Query: 120 IG 121 +G Sbjct: 839 LG 840 >gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 226 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D+ +D +E SGY + +NG EAL L + P +++ DI++ G E+ Sbjct: 5 ILIADDDPGIRLAVKDYLELSGYSVVTAKNGQEALSLLETYHPHLLVSDIKMPRTDGYEL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+++ E + +PV+ +T + + R + GC+ Y+ KP + I+ + + Sbjct: 65 VAQVRQRPEFRLLPVVFLTEKSTTHERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123 >gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQL 56 M K KV+I++D + ++L ++ G + + L Q +PD++I+DI L Sbjct: 1 MPKLQSKVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIML 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G +I KQI+ ++ +P+I ++A + D+ G + YI+KP S + Sbjct: 61 PDGEGYDICKQIR---DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRV 117 Query: 117 KKYIGEA 123 K + + Sbjct: 118 KAQLRRS 124 >gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED + GY ++ +G +ALEL R DV+++D+ L I G Sbjct: 1 MTNILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I++ + Q++ +I +TA + D+ G + Y+ KP SL I + Sbjct: 61 FTVCQEIRKVN--QKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|315125334|ref|YP_004067337.1| two-component system sensor histidine kinase/response [Pseudoalteromonas sp. SM9913] gi|315013847|gb|ADT67185.1| two-component system sensor histidine kinase/response [Pseudoalteromonas sp. SM9913] Length = 1329 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVEDNE +L L + Y L NG E L L + PD+++ D+ + + G Sbjct: 1071 KKLLIVEDNEEMRELLVSLFSDN-YTCLTANNGEEGLVLCQTQMPDIVLSDVMMPTMDGY 1129 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ I+ D + IPV+ ++A A + + Y+ KP S+ + +G Sbjct: 1130 QLLSAIRSDISINHIPVLLLSAKADSRSRIKGLDLLADDYLCKPFEASLLKSRVHGLLG 1188 >gi|306826251|ref|ZP_07459585.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431527|gb|EFM34509.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED ++ +E GY NG +A+E A+ + ++I DI + +G+E Sbjct: 2 KILLAEDETQLNRVITVALEREGYSVDSVFNGQDAVEKAKSNHYHLMIFDIMMPIKTGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I++ VI +TA A D G + Y++KP SL + ++ Sbjct: 62 ALKEIRQAGNTTH--VIMLTAMAEVNDRVTGLDAGADDYLTKPFSLKELLARLRSTARR 118 >gi|119490861|ref|ZP_01623144.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] gi|119453679|gb|EAW34838.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106] Length = 1161 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 67/116 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + ++++ + + + RNG E E A+ ++P+VII D+ + +SGL+ Sbjct: 805 TILVVDDNPDLRRYLSNILKPAKFHVVMARNGAEGFEQAKTYRPEVIITDLMMPVVSGLD 864 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + + I+ED +L+ P+I +TA A + + G +AY+SKP + + ++ Sbjct: 865 LIRMIREDVQLRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELLAEVRNL 920 Score = 87.5 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISGL 62 K+++V+D N+ L + Y L+ + +ALE LA++ VII D ++ ++SG Sbjct: 10 KILVVDDEPDNLDLLYRTFYRA-YKVLRADSAPQALEILAQEEDVAVIISDQRMPQMSGT 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-CEAYISKPISLSIFMETIKKYI 120 E+ ++ + I +T + D G Y++KP + + + Sbjct: 69 ELLSV--AATQYPDAIRILLTGYTDVEDLVEAINSGQVFKYVTKPWEAEELKVIVNQAL 125 >gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4] gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4] Length = 559 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 3/124 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ ED+ +N+ L+ GY +G E L ++ + D+++MDI + + G+ Sbjct: 423 ARILVAEDHPMNLMFIEKLLAKQGYEVHTVTDGTEVLPALQRERFDLVLMDIAMPVMDGI 482 Query: 63 EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+ +++ + + +P+IA+TA AMKGD E+ G + YI KPI+ + K+ Sbjct: 483 EATRSVRQAGNMITDKNVPIIAMTAHAMKGDREQFLAAGMDDYIGKPINSDNLCNMLLKH 542 Query: 120 IGEA 123 + A Sbjct: 543 LQRA 546 >gi|320333135|ref|YP_004169846.1| response regulator receiver and SARP domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754424|gb|ADV66181.1| response regulator receiver and SARP domain protein [Deinococcus maricopensis DSM 21211] Length = 343 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 60/122 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ +KL ++ +G+ + EAL+L PD++I D+ + ++G Sbjct: 1 MPRVLVVDDDAAILKLVSVILTRAGHEVRTCAHPNEALDLLNVMTPDLVISDVVMPYMTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E + ++ + ++P + +++ A + D R G + Y+ KP + + + Sbjct: 61 YEFLEHVRAQPNMADLPFMLLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTSAVDARLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 228 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED E ++ + +E GY NG E L A + + ++++D+ L +SGLE Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ Q+ PVI +TA D+ G Y++KP + + I+ + + Sbjct: 65 VLRRLRKTD--QQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQ 121 >gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 319 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|291618521|ref|YP_003521263.1| BaeR [Pantoea ananatis LMG 20103] gi|291153551|gb|ADD78135.1| BaeR [Pantoea ananatis LMG 20103] Length = 279 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED+ + I+ +G A+ G AL L + +PD++++DIQL I G + Sbjct: 54 ILVAEDDFEISDILMSYIKRAGMKAVHAAEGESALALIKTLQPDLVLLDIQLPLIDGWNV 113 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++S PVI VTA D+ + G + YI KP + S + I+ + A Sbjct: 114 LSTLRKES---NTPVIMVTALDQDIDKLMGLRLGADDYIVKPFNPSEVVARIEAVLRRA 169 >gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 241 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 K+++ +D++ ++L + GY +++ +G EAL R +++I+DI + E+ G+ Sbjct: 14 KILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMDGM 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+++++S+ IP+I +TA D+ R G + Y++KP + M +K + Sbjct: 74 QVVKELRKESQ---IPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 130 >gi|261416190|ref|YP_003249873.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372646|gb|ACX75391.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327682|gb|ADL26883.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 794 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 78/120 (65%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD---VIIMDIQLQEIS 60 KV++VEDNELN+++ +D++E++G + +G A+E ++ PD I+MDIQ+ + Sbjct: 673 KVLVVEDNELNLEISKDILESAGVVVESAEDGSIAVERLKEKGPDYYDCILMDIQMPVMD 732 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E T++I++ + IP+IA++A A D + + G + +++KPI ++ +++KK++ Sbjct: 733 GFEATREIRKMFPDKRIPIIALSANAFDEDRRKSFEAGMDGHLAKPIVIAQLEDSLKKFL 792 >gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] Length = 233 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 72/122 (59%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 +K+M+V+D K+ RD + GY ++ ++G EAL+L + H+ +II+D+ L ++SG Sbjct: 11 QKIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLPKLSG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++I+E ++P++ +TA + + DE + G + YISKP S + ++ + Sbjct: 71 FDVAREIRE---TSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILR 127 Query: 122 EA 123 + Sbjct: 128 RS 129 >gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603] gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L + +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120 >gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136] gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136] Length = 246 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL + +++++D+ + EISG + Sbjct: 23 RILVVDDEEDLCEILKFNLEMEGYTVDTAYSAEEAL-KLDITQYNLLLLDVMMGEISGFK 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +K + + EIP+I +TA + D G + YISKP SL + +K + Sbjct: 82 MARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 140 >gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ +D+ +L + + T Y NG+EALE + D+I +D+ + + G Sbjct: 19 RRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGF 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ S ++P++ +TA D + + G + YI+KP ++ F+ ++ + Sbjct: 79 DACERIRAKS---DVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRR 135 >gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 62 VLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 235 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + R +E G++ + G + L A + D I+++I L ++G E Sbjct: 2 RVLVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + ++ P++ +TA + D+ G + Y+ KP S + + ++ + A Sbjct: 62 IVRALRAKQIW--TPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRA 119 >gi|86358026|ref|YP_469918.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86282128|gb|ABC91191.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 246 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L ++ +G +G + + D+I++DI + GL Sbjct: 6 HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFLEANAVDLIVLDIMMPGDDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + IP++ +TA + D + G + Y++KP ++ + IK + A Sbjct: 66 LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAVRELLARIKAVLRRA 124 >gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 277 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 43 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 102 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 103 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 160 >gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1193 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEISG 61 ++++V+D N+ + +++E+ G NG+ AL+ + D+++MDIQ+ E+ G Sbjct: 935 RILLVDDMPTNLLIAGEMLESFGITVDTADNGVLALKKVIDEGNDYDIVLMDIQMPEMDG 994 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 LE T++++ Q +P+IA+TA A + +R G +++KPI + +T+ ++ Sbjct: 995 LEATRRLRAVERSQSLPIIAMTANAQDSERQRCLAAGMNDFLTKPIDPGLLQDTLFRW 1052 Score = 91.3 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 18/129 (13%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQE 58 +++ ++V+D+ L + L+E GY A+ +G EAL L R + + +D + Sbjct: 798 MRRALVVDDSPLARAILIRLLEKHGYSAIPAESGAEALGLLADTRTAPFEFVTIDFNMPG 857 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAM----KGDEERIRKGGCEAYISKPISLSIFM 113 + GLE+++ I+ +++ P ++ VTA + +A +SKP++ Sbjct: 858 MDGLELSEAIR--NQISPCPRLVMVTASDTAALGSDERLHC----VDAVLSKPVTA---- 907 Query: 114 ETIKKYIGE 122 I K + + Sbjct: 908 AQIGKLVRD 916 >gi|330465155|ref|YP_004402898.1| ATP-binding region ATPase domain-containing protein [Verrucosispora maris AB-18-032] gi|328808126|gb|AEB42298.1| ATP-binding region ATPase domain-containing protein [Verrucosispora maris AB-18-032] Length = 1457 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 V+IV+D+ N+ +E G L NG + + L +H D+++MD + + G Sbjct: 1330 ATVLIVDDDVRNVFALTSALELHGMTVLYADNGNDGVRLLAEHPEVDIVLMDAMMPDQDG 1389 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI+ + ++P++ +TA AM GD E G YI+KP+ L +E + +I Sbjct: 1390 YETTRQIRRNHRFADLPIVFLTAKAMPGDRESAIAAGASDYITKPVDLDELIELMGSWI 1448 >gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 236 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQE 58 M K +++VED + + ++ +GY L+ G AL+L H + + ++DI L Sbjct: 1 MTKTILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G + +++++ S+ +I +TA + D+ G + Y++KP S S + + Sbjct: 61 IDGFAVCRELRQKSKTLG--IIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDA 118 Query: 119 YIGE 122 Sbjct: 119 LYRR 122 >gi|255009666|ref|ZP_05281792.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED + +L + +E SGY +G+ L L R + ++I D+ L ++SG Sbjct: 1 MIKILVVEDEQRVAELLKRGLEESGYQVELAYDGVWGLRLFRAGEFQMVISDVILPKMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ + +PV+ +TA D+ G + Y+ KP IK + Sbjct: 61 FELCKEIRNINN--RVPVLMLTALGTTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|284038429|ref|YP_003388359.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817722|gb|ADB39560.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM 74] Length = 348 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++++EDNE + +++E +GY NG +E A KPD++I DI + + G Sbjct: 1 MKTILLIEDNEAIRENTAEILELTGYTVETAENGKLGVEKALARKPDLVICDIMMPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++ +L +P I +TA + D + + G + Y++KP S + I+ + Sbjct: 61 YGVLHIFNKNPQLSGVPFIFLTAKTERNDLRKGMELGADDYLTKPFDESELLSAIEGRLN 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|237723313|ref|ZP_04553794.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229447835|gb|EEO53626.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1337 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y+ NG EAL + ++KP+++I DI + E+ G Sbjct: 1072 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1130 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ + IK + E IPVI +TA + D + G + Y+ KP ++ I + + Sbjct: 1131 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1190 Query: 122 EA 123 A Sbjct: 1191 RA 1192 >gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803] gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 7 RLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ + E PV+ +TA D + G + YI KP I+ + + Sbjct: 66 VIQKIRNEKI--ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 123 >gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21] gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21] Length = 588 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDN +N ++ +I G ++G EA+E + D+I MD Q+ E+ G Sbjct: 457 ARVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFSRQPYDLIFMDCQMPEMDGY 516 Query: 63 EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T+ I++ + VIA+TA AM G E G + Y+SKP +L E I K+ Sbjct: 517 QATRAIRQRELGSGKHTTVIALTAHAMAGAREYCLTAGMDDYLSKPFNLEQLQELIAKW 575 Score = 110 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN++ + +L G+ + G L+ + ++++D++L ISG+E+ Sbjct: 7 ILIVDDNQVVCDVLAELFRNEGFDSWGVATGEACLDEVTRASWKLVMLDVRLPGISGIEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGE 122 + I+ D + VI +T+ + + G + Y+ KP L + + T+ K + Sbjct: 67 LEAIRRD--HPKTEVIIMTSHVSLETAVQALRLGAQDYLFKPFDDLEMVIATVNKALER 123 >gi|186477531|ref|YP_001859001.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184193990|gb|ACC71955.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D+ + L ++++GY A +G + +P V+++DI + Sbjct: 1 MNPQVLIVDDDPVVRDLLCRFLQSNGYDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++ + +IPVI VTA D G + Y++KP + I+ + Sbjct: 61 GLRALTALRAAGD--DIPVIFVTARGTVADRIIGLSLGADDYLTKPFDPRELLARIQTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG] gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] Length = 227 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|91772837|ref|YP_565529.1| response regulator receiver [Methanococcoides burtonii DSM 6242] gi|91711852|gb|ABE51779.1| Response regulator receiver domain-containing protein [Methanococcoides burtonii DSM 6242] Length = 204 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D N++L + Y +G+EALE + PD+I++D+++ ++ G + Sbjct: 7 KILVVDDEPWNLELMEAYLSGD-YEIALASDGVEALEKVKDFDPDIILLDVRMPKMDGYQ 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + IPV+ VTA + K D + G + ++SKP+ + + + Sbjct: 66 TCEKLKNDERTKFIPVVLVTALSEKEDRIKGIAAGADEFLSKPVDMLELKTRVHSLL 122 >gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400] gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 241 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQQEN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K+++V+D+ +L ++ GY + +G EAL + PD ++I+D+ + ++G Sbjct: 2 KILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTN-PDTSLMILDVMMPNMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K +++DS IP++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 61 LDVVKTVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007] Length = 290 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|317477946|ref|ZP_07937129.1| hsp90-like protein [Bacteroides sp. 4_1_36] gi|316905860|gb|EFV27631.1| hsp90-like protein [Bacteroides sp. 4_1_36] Length = 1357 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++IVEDN+ + + + Y L +G E L L R P++++ D+ + +SG Sbjct: 1094 AKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSGT 1152 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ KQIK D IPV+ +TA + G + YI+KP + ++ + + Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1210 >gi|270294949|ref|ZP_06201150.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274196|gb|EFA20057.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1357 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++IVEDN+ + + + Y L +G E L L R P++++ D+ + +SG Sbjct: 1094 AKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSGT 1152 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ KQIK D IPV+ +TA + G + YI+KP + ++ + + Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1210 >gi|256820389|ref|YP_003141668.1| histidine kinase [Capnocytophaga ochracea DSM 7271] gi|256581972|gb|ACU93107.1| histidine kinase [Capnocytophaga ochracea DSM 7271] Length = 1296 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+DN + D + L+ NG EAL L + H+PD+II D+ + ++G Sbjct: 1044 MYSVLLVDDNPDFLNYLYDELRPLFKSVLKAVNGEEALLLLKTHQPDIIISDVMMPVMNG 1103 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ K++KE ++ IPVI +TA + ++ K G +AY+SKP + + + I Sbjct: 1104 YQLCKEVKEHLQISHIPVILLTAKSDTESQKIGYKLGADAYLSKPFDIDLLLSVISNL 1161 >gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G EAL++ + D+ ++D+ L I G Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 64 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|226356935|ref|YP_002786675.1| response regulator CheY [Deinococcus deserti VCD115] gi|226318925|gb|ACO46921.1| putative response regulator, SarP [Deinococcus deserti VCD115] Length = 344 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D+ +KL ++ SG+ + + +EAL+L + PD+II D+ + ++G Sbjct: 1 MPRILVVDDDAAILKLVSVILSRSGHEVRTSSHPVEALDLLKVFTPDLIISDVVMPYMTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE ++++ED +L +P + +++ A +GD R G + Y+ KP + I + Sbjct: 61 LEFLEKVREDEKLSALPFMLLSSHAERGDVRRGMNLGADDYLPKPFTPQELNVAIDARLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 234 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMDI + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 >gi|160888601|ref|ZP_02069604.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492] gi|156861915|gb|EDO55346.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492] Length = 1343 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++IVEDN+ + + + Y L +G E L L R P++++ D+ + +SG Sbjct: 1080 AKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSGT 1138 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ KQIK D IPV+ +TA + G + YI+KP + ++ + + Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1196 >gi|323698577|ref|ZP_08110489.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio sp. ND132] gi|323458509|gb|EGB14374.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio desulfuricans ND132] Length = 346 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 + V++V+D N+ L + ++ Y L NG EALE+ PD++++D+ L + G Sbjct: 7 QTVLVVDDIPTNLDLLVETLKDE-YRVLAALNGREALEIVHSATPPDIVLLDVMLPHMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D + IPVI VTA + D+ R + G YI+KPIS ++ + ++ ++ Sbjct: 66 YTVCREIKADLRSRNIPVIFVTARDQEEDQTRGFEAGGVDYIAKPISPAVVLARVRTHL 124 >gi|312891997|ref|ZP_07751498.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295494|gb|EFQ72662.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1392 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN + D + S Y + NG E A PD+++ DI + + G+E Sbjct: 1135 HVLIVEDNSEMRQYLADSLGAS-YKISEAANGREGWHKALALHPDLVVSDISMPYMDGIE 1193 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++++K D IP+I +TA A + D+ + G Y++KP I IK + Sbjct: 1194 LSRKLKSDKRTSHIPIILLTAMASQQDQLAGLELGVSDYLTKPFHFEILNIKIKNLL 1250 >gi|298374416|ref|ZP_06984374.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] gi|298268784|gb|EFI10439.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] Length = 1369 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++ VEDNE + + +T Y + +NG LE A + PDVI+ D+ + ++G+ Sbjct: 1106 QTLLFVEDNEDLCRYLMNAFQTD-YRVVIAKNGKVGLEKALEILPDVIVSDVMMPVMNGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + +K D IPVI +TA A + + G + Y+ KP SL++ I + Sbjct: 1165 ECCEALKTDERTAHIPVILLTALAEERQQLEGYGAGADDYLPKPFSLAVLKAKINNLLKR 1224 Query: 123 A 123 + Sbjct: 1225 S 1225 >gi|258593741|emb|CBE70082.1| putative response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 460 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++V+D + + L+E GY + +G ALEL PD++I D+++ ++ G Sbjct: 1 METILVVDDEQGIREFLTVLLEKQGYRVITASDGERALELIAHQSPDLVISDVRMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I++ +PVI VTA+A + + G YI+KP + ++K + Sbjct: 61 IGLLTGIRKTD--PHLPVIMVTAYASMDSTIQAMRLGAHDYITKPFRIDEIRLVVEKALA 118 Query: 122 E 122 + Sbjct: 119 K 119 >gi|288929066|ref|ZP_06422912.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] gi|288330050|gb|EFC68635.1| DNA-binding response regulator/sensor histidine kinase [Prevotella sp. oral taxon 317 str. F0108] Length = 898 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ +DN+ ++ R L+ET Y L NG+ AL++A + PD+++ D+ + +++GLE Sbjct: 655 TILFTDDNDDVCQMARTLLETH-YRVLTAPNGVVALQMAELNIPDLVVSDVMMPQMNGLE 713 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K+ + IPVI +TA + + G +AYI+KP S + + I+ + Sbjct: 714 LCSRLKQSTATSHIPVILLTARTLDEQRIEGYEHGADAYITKPFSAPLLLARIQNLL 770 >gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] Length = 249 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED +L + + Y +G EAL+ + D +I+DI + + GL+ Sbjct: 21 RILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGLQ 80 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ E +PV+ +TA D G + Y+ KP + + ++ + + Sbjct: 81 VLRKLRQRKE--HVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRK 137 >gi|68477999|ref|XP_717003.1| hypothetical protein CaO19.5181 [Candida albicans SC5314] gi|68478134|ref|XP_716936.1| hypothetical protein CaO19.12648 [Candida albicans SC5314] gi|46438625|gb|EAK97953.1| hypothetical protein CaO19.12648 [Candida albicans SC5314] gi|46438696|gb|EAK98023.1| hypothetical protein CaO19.5181 [Candida albicans SC5314] Length = 1081 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL ++E G+ NG+EA E +++K DV++MD+Q+ + G E Sbjct: 875 KILLAEDNLVNQKLAVRILEKQGHSVEVVENGLEAYEAIKRNKYDVVLMDVQMPVMGGFE 934 Query: 64 ITKQIKEDSELQE--------IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 T++I++ + P+IA+TA AM GD E+ G + Y+SKP+ + M+T Sbjct: 935 ATEKIRQWEKKSNPIDSLTFRTPIIALTAHAMLGDREKSLAKGMDDYVSKPLKPKLLMQT 994 Query: 116 IKKYI 120 I K I Sbjct: 995 INKCI 999 >gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 657 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 2/122 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ EDNE N+ L D + GY RNG EAL+LAR+ PD I+MDIQ+ + G+E Sbjct: 536 HILLAEDNEDNISLLLDFLPFHGYALTIARNGQEALDLARECHPDAILMDIQMPVMDGIE 595 Query: 64 ITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++++ D + L PVIA+TA AM GD +R G +AYI KP+ L + I + Sbjct: 596 AIRRLRADPDPGLAHTPVIALTALAMPGDRDRCLAAGADAYIVKPLVLHDLPDQIAAVMH 655 Query: 122 EA 123 ++ Sbjct: 656 QS 657 >gi|302878235|ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gi|302581024|gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 636 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+ +KL +++++G+ NG+EAL + RQ P +I+ D + E+ GL Sbjct: 324 RVLVVEDDPATLKLLDAMLKSAGHTVALAANGLEALRMIRQQVPQLIVSDWMMPEMDGLS 383 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + ++++E + I + +TA + + G + Y+ KPIS IF+ ++ Sbjct: 384 LCRKLRESDAWRNIYTVILTAQESPERLIQAFEAGADDYLLKPISPKIFLARLRAA 439 >gi|253689068|ref|YP_003018258.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755646|gb|ACT13722.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+I+ED+ + + GY +G + L +A KPD+I++D+ L +++G Sbjct: 4 KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQKGLHMALTSKPDLILLDVMLPKMNGS 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++ S IPVI VTA + + + G + Y+ KP + + ++ + Sbjct: 64 EVLSALRQRS---NIPVIMVTAIGDEPERIGALRYGADDYVVKPYNPQEVVARVQAVLRR 120 >gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900] Length = 319 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11] gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11] Length = 864 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 5/122 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA--RQHKPDVIIMDIQLQEIS 60 K V++VEDN +N K+ L++ +G+ NG EAL++ + +++MD + + Sbjct: 742 KTVLVVEDNAINQKVASLLLKKAGFSVEIANNGQEALDMVMSKTSPYSLVLMDCMMPIMD 801 Query: 61 GLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G T+ I+ E+ E + +P+IA+TA D ++ + G + Y++KP + +E ++ Sbjct: 802 GFAATEAIRKWEENQEKKRLPIIALTASVFVEDIDKCYQSGMDDYVAKPFRKELILEKLE 861 Query: 118 KY 119 Y Sbjct: 862 AY 863 >gi|187934010|ref|YP_001886396.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722163|gb|ACD23384.1| putative lantibiotic biosynthesis regulatory protein [Clostridium botulinum B str. Eklund 17B] Length = 220 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++ ++D + + + +E G+I N E + + K D+I++DI + EI G Sbjct: 1 MATILAIDDEIGILNIIKVALEKEGHIVTTVSNANE-ISYNQYTKYDLILLDIMMPEIDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+ L + P++ +TA M+ D + G + YI+KP +S + ++ Sbjct: 60 FTLCNKIRS---LVDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|94499427|ref|ZP_01305964.1| putative response regulator [Oceanobacter sp. RED65] gi|94428181|gb|EAT13154.1| putative response regulator [Oceanobacter sp. RED65] Length = 560 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N ++ + L+E G+ + +NG EA+ + D+++MD+ + + GLE Sbjct: 2 HILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEFKSGDFDLVLMDVIMPIMDGLE 61 Query: 64 ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 TK+IKE + +PVI +TA + G + ++SKP + I I ++ Sbjct: 62 ATKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEVILKAKIHAHLR 120 >gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D +KL + ++ GY L+ +G EAL +A +PD+ ++D L ++ G+ Sbjct: 4 AKILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGLPDMEGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++E ++PVI +T + D+ G + Y+ KP + + I+ + Sbjct: 64 EVLRRLRE---WSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRH 120 Query: 123 A 123 A Sbjct: 121 A 121 >gi|114321576|ref|YP_743259.1| response regulator receiver modulated metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] gi|114227970|gb|ABI57769.1| response regulator receiver modulated metal dependent phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1] Length = 480 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN N++L ++ GY +G AL+ + D+I++DI++ ++ G E+ Sbjct: 14 VLVVDDNPANLRLMVSVLREGGYAVRVAPSGRLALDSVQARPADLILLDIRMPDLDGYEV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D +IPVI ++A D+ R G YI+KP + ++ ++ Sbjct: 74 CRRLKADPARHDIPVIFLSALCEPADKVRGFAVGAVDYITKPFVAEEVLVRVQSHL 129 >gi|260769733|ref|ZP_05878666.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972] gi|260615071|gb|EEX40257.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972] gi|315182272|gb|ADT89185.1| chemotaxis protein CheY [Vibrio furnissii NCTC 11218] Length = 119 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D+ ++ ++ +GY +G EAL A+ K DV+I D+ + + G Sbjct: 1 MTKILAVDDSISIRQMVSHTLKDAGYDVETANDGREALTKAQSTKFDVVISDVNMPNMGG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K I+ + + + IP++ +T ++ + G ++ KP + ++T+K+ + Sbjct: 61 FELVKAIRGNPQYKFIPILMLTTETSMEKKQEGKLAGATGWLVKPFNPDTLLKTLKRVL 119 >gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+IVED L ++ Y + EALE ++ D+ I+DI L + S Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDAS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLTICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6] gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 244 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ L R + G+ L + + + D+I++D+ L GL Sbjct: 11 RIVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLMLPGEDGLS 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ +++ P+I +TA D + G + Y+ KP + + I + Sbjct: 71 ICRRLRAANDI--TPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRR 127 >gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 269 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A++ AR+ +PD +++D+ L ++ GL Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ EL ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 104 VLGRLRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 161 >gi|83643354|ref|YP_431789.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396] gi|83631397|gb|ABC27364.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396] Length = 120 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D+ ++ ++ +GY + NG EAL A+ K D++I D+ + + G Sbjct: 1 MAKILAVDDSASMRQMVTFTLKGAGYQVDEAANGQEALSKAKSGKYDLVITDVNMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + K ++ + + P++ +T + + + G +I KP + + T+KK +G Sbjct: 61 ISLIKNLRAEGAYKFTPLLMLTTESGADKKAEGKAAGATGWIVKPFNPDQLVATVKKVLG 120 >gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 232 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ ++ + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016] gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016] Length = 243 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 10 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 70 ICRRLRNANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 126 >gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] Length = 278 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + L + G+ NG +A L + + D+ ++DI L ++ G E Sbjct: 46 RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDVDGFE 105 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + + PVI +TA + D+ G + Y+ KP + K + Sbjct: 106 LLRTIRTE---RTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRR 161 >gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 226 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + + GY ++ NG LE+A + + D+II+D+ L EI+G Sbjct: 1 MIKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++I++ + E+P+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRIRK---VSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC BAA-613] Length = 960 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 69/122 (56%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEIS 60 +V++ +DNELN ++ R L+E G +G EA+ L + ++MDI++ + Sbjct: 839 RVLLADDNELNREIARTLLEMRGMEVETAEDGQEAVNLYKSRGAGYFSAVLMDIRMPRMD 898 Query: 61 GLEITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GLE T+ I+ ED IP++A+TA A + D+ R + G Y+ KP+ + ++ +KK Sbjct: 899 GLEATRTIRAMEDENTDRIPILAMTANAFEEDKARAYEAGMNGYLVKPLDMEAVLDELKK 958 Query: 119 YI 120 ++ Sbjct: 959 HL 960 Score = 93.7 bits (233), Expect = 9e-18, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 V++V+D+ L ++E +G +L +G A+E ++ D+ ++D ++ ++ Sbjct: 701 VLVVDDDPLVGSQATSILEKAGAQSLWVDSGFRAVEEVQRLLEENRHYDIAMIDWKMPDM 760 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E ++I+ + +I ++A+ E+ R G +ISKP+ + + Sbjct: 761 DGVETARRIRAL-VGPDTTIIMISAYDWSRIEDEARNAGVNCFISKPLFGGTIYDAFARA 819 Query: 120 IGEA 123 + + Sbjct: 820 VNRS 823 >gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 220 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V+IV+D D +E GY + G +A +L +Q++P +++ DI++ ++ Sbjct: 1 MPLTVLIVDDEPGIRLAVTDYLEAVGYTVISAATGKQAWQLVQQYRPHLLVTDIRMPQMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K +++ + +PVI +T + + R K GC+AY++KP +L I+ + Sbjct: 61 GYELVKLVRQQPAFRLLPVIYLTECSQTQERIRGYKLGCDAYLAKPFNLEELAAVIRNLL 120 Query: 121 GE 122 Sbjct: 121 DR 122 >gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905] gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905] Length = 915 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K ++IV+D+ N+ + +ET G L ++G+E LE+ + H D+++MDI + + G Sbjct: 791 KNILIVDDDNRNIYALKTALETRGMNILVAKDGLECLEVLQAHHEIDLVLMDIMMPNMDG 850 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E I++ + ++P+IA+TA AMK D ++ + G YISKP++L + ++ ++ Sbjct: 851 YEAMTIIRQQMKRTDLPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 909 >gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] Length = 246 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQE 58 ++++VED++ + + ++ G+ NG EAL Q D+I++D+ L Sbjct: 15 TARLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPG 74 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GL++ +Q++ ++ P++ ++A + D + G + Y+ KP + + + Sbjct: 75 LGGLDVCRQLRGNNIT--TPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRA 132 Query: 119 YIGE 122 + Sbjct: 133 LLRR 136 >gi|148656471|ref|YP_001276676.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148568581|gb|ABQ90726.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 202 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+ + + +GY L G AL+ A PD+II+D+ + I G E Sbjct: 7 TILVVDDTPANLAILFTGLRNAGYKVLINERGDIALQTAAYALPDLIILDVMMPGIDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++KED ++IPVI +TA DE + G YI+KPI + + + I ++ Sbjct: 67 TCRRLKEDPRTRDIPVILMTALTDPIDEVTGLRAGAVDYITKPIHVEVVLARISTHL 123 >gi|307331969|ref|ZP_07611063.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306882402|gb|EFN13494.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 227 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 68 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 231 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L R+ +PD+I++D+ L I G E+ Sbjct: 11 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEVC 70 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 71 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124 >gi|162449627|ref|YP_001611994.1| two component system transcriptional regulatory protein [Sorangium cellulosum 'So ce 56'] gi|161160209|emb|CAN91514.1| two component system transcriptional regulatory protein [Sorangium cellulosum 'So ce 56'] Length = 234 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+++ED + R ++ GY ++ G + + A PD++++D+ L ++ GLE+ Sbjct: 8 VLLIEDEPQMRRFLRAMLAARGYRLVEAETGSDGIAQATTRNPDLVLLDLGLPDMDGLEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++++E +P+I ++A + D+ GG + Y++KP S + ++ + Sbjct: 68 TRRLRE---WSAVPIIVLSARGQEQDKIDALDGGADDYLTKPFSAGELLARLRVALR 121 >gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + VED+ +L +E++G+ A +G LE P+++++DI L G+E+ Sbjct: 2 IFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGMEL 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K + ++IPVI VTA + D+ + G + Y++KP + + IK + + Sbjct: 62 LRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRS 120 >gi|51473435|ref|YP_067192.1| response regulator PleD [Rickettsia typhi str. Wilmington] gi|51459747|gb|AAU03710.1| response regulator protein [Rickettsia typhi str. Wilmington] Length = 450 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + ++ K D I++D+ + E+ G Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEKIDTILLDVMMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K IK D IPV+ +TA + D + + G + ++ KPI+ + +K Sbjct: 61 FEVCKIIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLIKPINDTALFVRLKSL 118 Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K + ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIKQILVKLTKYVKVISNSDE-LDIINEYTPDLVIISSTLENEDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +E+ + +I + + G Y PI + + I+ + Sbjct: 211 RISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLRR 270 >gi|51246143|ref|YP_066027.1| two-component system response regulator [Desulfotalea psychrophila LSv54] gi|50877180|emb|CAG37020.1| related to two-component system response regulator (hybrid family) [Desulfotalea psychrophila LSv54] Length = 363 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D N+ L + ++ S Y +G AL A +H PD+I++DI + E+ G E Sbjct: 9 TILLVDDEPNNLSLLQQVLADS-YNLKFANSGKSALAGAVKHMPDLILLDIMMPEMDGYE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +K+D IPVI VTA D++R G Y++KPI I + + ++ Sbjct: 68 VCRLLKKDPLTVNIPVIFVTAKGEIADKKRGFDLGAVDYVTKPIEPPILLARVATHLR 125 >gi|326335904|ref|ZP_08202081.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691868|gb|EGD33830.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 241 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + SG+ +NGME + R+ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E +E ++P+I +TA M+ D + K G + Y++KP + + I+ + Sbjct: 66 TLAKEIREKNE--KVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQR 123 >gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 774 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ + ++ Y+ +G + ++I+DI L +++G+ Sbjct: 2 KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++PV+ +TA D+ G + Y+ KPI + ++ + A Sbjct: 62 LCRKLRSHN--YQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119 Score = 110 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 55/120 (45%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++ + D+ ++L L+ G + ++ PD++I+D+++ +G++ Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+ + + +P++ +T + + G + +ISKP+ + + + + Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606 Score = 51.3 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ--EISGLE 63 +IV+ + + + + G A A + +++P +I++++ E GL Sbjct: 365 LIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGLM 424 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + I EIPV+ + + D + + G A++ KP+S ME + Sbjct: 425 LLEDI--AYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIV 475 >gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624] gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624] Length = 319 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDHAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1464 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1264 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1265 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323 >gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] Length = 242 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EAL+ + PDV+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE-PDVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRVFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARR 117 >gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 231 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D ++ R + G+ +G EAL A + P V+++D+ L ++ GL Sbjct: 6 RVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASRMDPHVVVLDLGLPDMDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PVI ++A + D+ G + Y++KP + F+ ++ + Sbjct: 66 VLEGLR---GWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRR 121 >gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC 19977] gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus] Length = 228 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED + L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRAKS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116] gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116] Length = 1054 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN +N K+ + +GY NG EA+E+ +++ +I+MD + + G E Sbjct: 771 KILVVDDNTVNQKIAGLHVTKAGYEFDIAANGQEAVEMFAKNQYALILMDCMMPVMDGFE 830 Query: 64 ITKQIKEDSELQE----IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK+I++ + IP+IA+TA + D ++ G + Y+ KP I + + K Sbjct: 831 ATKRIRQLEKESNRGYQIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAPILKDKLSKA 890 Query: 120 I 120 + Sbjct: 891 V 891 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 ++++VEDN +N K+ L+ +GY NG AL++ +Q + D+I+MD + + G Sbjct: 934 RILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGF 993 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TK+I+ + L + P+IA+TA + D +R G +AY+ KP+ + I+ Sbjct: 994 EATKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESV 1053 Query: 120 I 120 I Sbjct: 1054 I 1054 >gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] Length = 225 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I+ED E + + + GY +G E LEL D+I++D+ L I GL+ Sbjct: 2 HILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +Q +E + PV+ ++A D+ G Y++KP I+ Sbjct: 62 ILRQFRETN--SSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRR 118 >gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] Length = 1710 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 59/117 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED N L L+ET G+ NG EA+EL P +I MD+Q+ ++G + Sbjct: 1503 RILVAEDRPDNRHLIVKLLETVGFEVQAAVNGQEAIELWESWSPHLIWMDMQMPVMNGYQ 1562 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK + ++ +IA+TA + + I GC ++ KP I++Y+ Sbjct: 1563 AIQYIKATPKGEDTVIIALTASVFEEERHNIIALGCNDFVRKPFEEQEIFAKIQQYL 1619 >gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] Length = 227 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED E ++ + +E GY + + G EA+E D+I++D+ L IS Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ + + IP+I +TA D+ G YI+KP + + I+ + Sbjct: 61 GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|91202235|emb|CAJ75295.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 271 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 63/118 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++IVED E N + + I G+I++ NG+ AL R+ PD+I++DI + E+ G Sbjct: 5 ARILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQPPDIILLDIMMPEMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +K ++ + IPVI ++A R + G + Y++KP + + I + Sbjct: 65 EVLCHLKGNASWRHIPVIMISAIGDMDSIVRCIEKGADDYLTKPFNPVLLKARIDSCL 122 >gi|71907263|ref|YP_284850.1| response regulator receiver [Dechloromonas aromatica RCB] gi|71846884|gb|AAZ46380.1| Response regulator receiver [Dechloromonas aromatica RCB] Length = 123 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 61/123 (49%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IV+D + L++ G+ +G EAL PD++++D+ + + S Sbjct: 1 MTKKILIVDDEPNIVISLEFLMKKEGFAVAVAVDGEEALAKVADFDPDLVLLDVMMPKKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + ++ D + ++ +TA + + G +AY++KP S + +K + Sbjct: 61 GFEVCEALRADPARAGLKIVMLTAKGRDTEVAKGLAIGADAYVTKPFSTKELVAMVKAML 120 Query: 121 GEA 123 G A Sbjct: 121 GVA 123 >gi|148545543|ref|YP_001265645.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148509601|gb|ABQ76461.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 239 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D++ +L D + +GY L +G + + +HK +++++D+ L Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYSVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +Q++ L VI ++A D + G + Y++KP + IK + Sbjct: 61 GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] Length = 224 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + ++ + + +G EAL+ + D+I++D+ L +++G E Sbjct: 2 KILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLPKMNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ + E V+ +TA D+ + G + Y+ KP + I+ I Sbjct: 62 VVKHLRANKN--ETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRR 118 >gi|320159178|ref|YP_004191556.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O] gi|319934490|gb|ADV89353.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 +D++ + D + +G+ NG + PD+II+DI + G + ++I Sbjct: 2 DDHQDLREALSDYLGKAGFDVQCAENGQVMWKKLELCAPDLIILDIMMPGDDGFTLCQKI 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++P+I +TA A + D + G + Y++K S + IK + + Sbjct: 62 R---RYSDVPIIMLTAVAEEADRVAGLEMGADDYMTKSFSPRELLARIKTILRRS 113 >gi|307719669|ref|YP_003875201.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306533394|gb|ADN02928.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D E+N++ F ++ G+ + R+G EAL + ++ +PD++++D + ++SG Sbjct: 4 KKILIVDDEEINLEFFEIMLSKLGFEVYKARDGEEALLVMKEQRPDLVLLDNIMPKLSGW 63 Query: 63 EITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+T+ +K++ + + IP++ +A D+ + G E YI+KP + S + I Sbjct: 64 EVTRIVKQEPDYRDVAHIPIVMFSAMDDVRDKIEGFELGVEDYITKPFNFSEVLARINSV 123 Query: 120 IG 121 + Sbjct: 124 LR 125 >gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067] gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I +D++ + L + ++ GY +G E L ++ +P ++I+DI + E++ Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ + ++ + L P++ ++A A D+ G + Y+ KP + +K + Sbjct: 61 GLEVCRLMRSEGIL--TPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 238 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M++ ++IV+D +++ R +E G+ L+ R+G AL ++ K D+ I+DI + I+ Sbjct: 1 MVRTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++++ + +P+I ++A + D+ G + +ISKP SL + I+ + Sbjct: 61 GYELIKIVRKEYK---MPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|228473133|ref|ZP_04057890.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC 33624] gi|228275715|gb|EEK14492.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC 33624] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + SG+ +NGME + R+ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E +E ++P+I +TA M+ D + K G + Y++KP + + I+ + Sbjct: 66 TLAKEIREKNE--KVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQR 123 >gi|227819020|ref|YP_002822991.1| two-component transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338019|gb|ACP22238.1| two-component transcriptional regulator [Sinorhizobium fredii NGR234] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D + IE +G ++ RNG EA+ R+ D+ I+DI + E+ G Sbjct: 1 MLRILVVDDEPHIRDVICFAIERAGMTSVVARNGAEAMMAFRRGNVDLAILDIGMPEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++I+ +S L PV+ +A + D + G + Y++KP S + +K + Sbjct: 61 LEVCRRIRTESAL---PVLFPSARDDEIDRVVGLEIGGDDYVTKPFSPRELIARVKAILK 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|149371430|ref|ZP_01890916.1| response regulator receiver domain protein (CheY-like) [unidentified eubacterium SCB49] gi|149355568|gb|EDM44127.1| response regulator receiver domain protein (CheY-like) [unidentified eubacterium SCB49] Length = 121 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 63/120 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ K++IV+D + + G+ R+G EALE+ H PD++++DI + + Sbjct: 1 MMHKILIVDDEPNIVMSLEYAFKKKGFEVFIARDGSEALEIVENHIPDIVLLDIMMPNVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +QIK LQ V+ +TA D E+ K G + Y++KP S+ + I++ + Sbjct: 61 GYQTLQQIKNKPLLQATKVVFLTAKNRASDIEKGLKLGADKYLTKPFSIKKIVSEIQELL 120 >gi|116878444|ref|YP_356197.2| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|114843080|gb|ABA88027.2| two component transcriptional regulator, winged helix family [Pelobacter carbinolicus DSM 2380] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++VED + +E GY + +G +ALELA + ++I+D+ L ISG Sbjct: 3 SPHILLVEDELHIARGLIFNLEQEGYRVIHVSSGEQALELAPWSQCLLVILDLMLPGISG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +Q++ +P++ +TA + D + G + Y++KP SL+ F+ ++ + Sbjct: 63 LEVCQQLRAQD--PRLPILILTALGKEQDRIAGLEAGADDYLTKPFSLTEFLLRVRGMVN 120 Query: 122 EA 123 + Sbjct: 121 RS 122 >gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED++ +L + ++ +GY NG+ ALEL + D+I++D+ + E+ G E Sbjct: 4 ILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQHIDLIVLDVMMPEMDGYEF 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 TKQ++ ++ P++ VTA + D+ + G + Y+ KP++ + IK + A Sbjct: 64 TKQLRGSND--NTPILMVTAKQLPEDKCKGFLAGTDDYMVKPVNEDEMLLRIKALLRRA 120 >gi|330501377|ref|YP_004378246.1| response regulator receiver protein [Pseudomonas mendocina NK-01] gi|328915663|gb|AEB56494.1| response regulator receiver protein [Pseudomonas mendocina NK-01] Length = 121 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 70/119 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ M ++E G+ L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+Q+ +D+E IPVI VT + D+ ++ G + Y++KP+ ++T+ + Sbjct: 61 FQATRQLTKDAETSHIPVIIVTTKDQETDKVWGKRQGAKDYLTKPVDEDTLLKTLNAVL 119 >gi|317474353|ref|ZP_07933627.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909034|gb|EFV30714.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1320 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDN + Y + +G+EAL++ ++ D+++ DI + + G+E+ Sbjct: 1067 LIVEDNLEMQDFISKRL-MDKYDVYRAADGLEALKVLKEFDIDIVVSDIMMPNMDGMELL 1125 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K IKE E IPVI ++A + + G +AYI KP SL M I+ + Sbjct: 1126 KNIKETVEYSHIPVILLSAKSDLESRINGLELGADAYIEKPFSLEYLMAQIQNLL 1180 >gi|256843524|ref|ZP_05549012.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|293381453|ref|ZP_06627449.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|312978303|ref|ZP_07790046.1| DNA-binding response regulator DltR [Lactobacillus crispatus CTV-05] gi|256614944|gb|EEU20145.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|290921970|gb|EFD98976.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|310894822|gb|EFQ43893.1| DNA-binding response regulator DltR [Lactobacillus crispatus CTV-05] Length = 221 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED +++ +E +GY NG++A+E A+++ DVI++DI + + G+ Sbjct: 2 KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 K+I+E + + ++ +TA A D G + Y++KP SL + ++ Sbjct: 62 ALKKIRESGD--KTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRS 114 >gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483] Length = 1464 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1264 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1265 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323 >gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR---QHKPDVIIMDIQLQEIS 60 ++++VED++ + + + G+ ++G+ AL+ + D+II+D+ L ++ Sbjct: 13 RILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ D + P++ ++A + D + G + Y++KP L+ + + I Sbjct: 73 GLELCRKIRNDEDY--TPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALI 130 Query: 121 GEA 123 + Sbjct: 131 RRS 133 >gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202] gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202] gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL103PA1] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+I+ED E + ++ G+ NG + LE+ ++ D++++D+ + + G Sbjct: 1 MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ + +I VTA + D+ + G + Y++KP S + I+ Sbjct: 61 TEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300726552|ref|ZP_07059996.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299776166|gb|EFI72732.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1330 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++EDN + D + + Q +G E L A P ++I DI + + G E Sbjct: 1073 TILVIEDNAGIRQYIADSLSDR-FTVYQAADGREGLAKALDLIPTIVISDIMMPAMDGNE 1131 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K +K D IPVI +TA +E + G ++YI+KP S S+ + I I + Sbjct: 1132 LCKALKTDMRTSHIPVILLTAKDSNQAKEEGYEAGADSYITKPFSRSLLVTRIDNLIAQ 1190 >gi|298290157|ref|YP_003692096.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296926668|gb|ADH87477.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VED+ L D + GY +G + PD++I+DI L GL Sbjct: 4 ARVLLVEDDRDIRSLLVDFLGGEGYDVEAVGSGALMDRALMRGMPDLVILDIMLPGEDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P++ +TA D + G + Y+ KP + + I+ + Sbjct: 64 SICRRLRTKSR---VPILMLTAKHDDIDRIVGLEIGADDYLGKPFNPRELLARIRALLRR 120 Query: 123 A 123 A Sbjct: 121 A 121 >gi|260642820|ref|ZP_05417466.2| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260620414|gb|EEX43285.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1343 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++IVEDN+ + + ++ NG EAL + ++KPD++I DI + E+ G Sbjct: 1075 SQRILIVEDNDELRNYLSQTL-SEDHLIQVCSNGKEALTVIPEYKPDLVISDIMMPEMRG 1133 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + IK + E IPVI +TA + D + G + Y+ KP ++ I TI + Sbjct: 1134 DELCQAIKSNIETSHIPVILLTALNNEKDILSGLRIGADEYVLKPFNIGILKATISNLLA 1193 Query: 122 -EA 123 A Sbjct: 1194 NRA 1196 >gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1331 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 69/115 (60%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE+N ++ L++ +G + +G EALE D+++MD+Q+ + G+ T Sbjct: 995 LLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITAT 1054 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + Q +P++A+TA AM D ER + G ++SKPI + F + ++ ++ Sbjct: 1055 EHIRANPRWQSLPIVAMTANAMAIDIERCLQAGMNEHLSKPIEVDKFYQVLRHFL 1109 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 10/119 (8%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+DN+ + L+ + + NG EAL +Q D++ +D + ++G+ Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFMETI 116 E+ ++K + VTA+ + + E G +A I KP++ S ++ I Sbjct: 912 ELLTRVKTLGLRGHMKSFLVTAYGREINLE-----GENSKLVDALIVKPVNPSNLLDAI 965 >gi|83643744|ref|YP_432179.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631787|gb|ABC27754.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Hahella chejuensis KCTC 2396] Length = 469 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 1 MLK-----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55 M K ++++V+D N++L ++ + + G EALE+A + PD+I++DIQ Sbjct: 1 MAKQQPAGRILVVDDQATNIELLHNIFKEV-HEVEFAMTGEEALEMAIRDLPDIILLDIQ 59 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 L + G E+ +++K ++ + IPVI +TA D K G Y+ KP + + Sbjct: 60 LPGMDGFEVCRRLKSNANTRHIPVIFLTAKNDVDDMVNGYKQGAVDYVIKPFNWFELIAK 119 Query: 116 IKKYI 120 + + Sbjct: 120 VNTQL 124 Score = 133 bits (337), Expect = 6e-30, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IV+D+ N++ ++ Y NG +A ++AR+ P +I++D+ L + G Sbjct: 167 QRVLIVDDSVSNIETLASMLGDE-YELFFAVNGEQAKQIAREAHPHLIMLDVVLPDTDGY 225 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ KQ+K + E ++IP++ VT+ DE R + G YI KP S SI + + Sbjct: 226 QVCKQLKREPETRDIPIVFVTSRDSAEDETRGLEAGAIDYIIKPYSHSIVKARTRNLL 283 >gi|300866251|ref|ZP_07110963.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300335770|emb|CBN56123.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 362 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED EL + +L++ + AL NG +E+A Q +PD+I+ D+ + E+ G Sbjct: 1 MPKILVIEDEELIRENILELLDAEEFEALGAANGKIGVEMAAQQQPDLILCDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++ IP I +TA A K D + + G + YI KP + + + I + Sbjct: 61 YSVLAALRSHPLTATIPFIFLTARAEKADTRKGMELGADDYIPKPCTPAELLAAIATRL 119 >gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L ++ +G +G + D+I++D+ L GL Sbjct: 6 HILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ S +IPV+ +TA + + D + G + Y++KP S + IK + A Sbjct: 66 LCRQLRAKS---DIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRA 122 >gi|256839824|ref|ZP_05545333.1| two-component sensor histidine kinase [Parabacteroides sp. D13] gi|256738754|gb|EEU52079.1| two-component sensor histidine kinase [Parabacteroides sp. D13] Length = 968 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVEDN L+ + Y + +NG E LE+A + PD+I+ D+ + E+ Sbjct: 715 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 773 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++E L IP+I +TA + + + G +AY+ KP + I K + Sbjct: 774 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKLL 833 Query: 121 GE 122 + Sbjct: 834 EQ 835 >gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 221 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ +GY+ L +G+ AL ++ +PD+I++D + + G E Sbjct: 13 VLIVDDTPDNLAMLSDALDDAGYMVLVALDGLSALNRVQRRRPDLILLDAMMPGLDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K +IPV+ +T + + G Y++KPI + + ++ + Sbjct: 73 CRRLKAQPASADIPVVFMTGLTDTRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTS 131 >gi|212695100|ref|ZP_03303228.1| hypothetical protein BACDOR_04638 [Bacteroides dorei DSM 17855] gi|212662416|gb|EEB22990.1| hypothetical protein BACDOR_04638 [Bacteroides dorei DSM 17855] Length = 1347 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++EDNE K T Y L+ NG E LE+A P++I+ DI + ++ G+++ Sbjct: 1089 LVIEDNEDIRKYIVSSFNTE-YKVLEGSNGKEGLEIALSTIPNIIVSDIMMPQMDGIQLC 1147 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IKED IPVI +TA D+E + G ++Y++KP S + + + Sbjct: 1148 RAIKEDIRTSHIPVILLTAKDSMQDKEEGYESGADSYLTKPFSAKLLRTRMLNLL 1202 >gi|212637155|ref|YP_002313680.1| response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain-containing protein [Shewanella piezotolerans WP3] gi|212558639|gb|ACJ31093.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain protein [Shewanella piezotolerans WP3] Length = 338 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ + Y +G +AL LA++ PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILVGILSSD-YKIRVAIDGPKALALAQKSTPDIILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K+D IPVI VTA A DE + G YI+KP+S + +K ++ Sbjct: 63 EVCERLKQDPLTCHIPVIFVTALAETADETQGFALGAVDYITKPVSAPVVQARVKTHL 120 >gi|120435017|ref|YP_860703.1| two-component system response regulator [Gramella forsetii KT0803] gi|117577167|emb|CAL65636.1| two-component system response regulator [Gramella forsetii KT0803] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + Y +NGME E ++ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGTVLKDYLAMNDYEVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E +E EIP+I +TA AMK D + K G + Y++KP + + IK + Sbjct: 66 TLAKEIREKNE--EIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123 >gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans CH34] gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system with CreC [Cupriavidus metallidurans CH34] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + T G G EAL+ R +PD++I+D+ L +ISG E+ Sbjct: 6 VLVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGLPDISGFEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ ++PVI +TA + D + G + Y+ KP S ++ + A Sbjct: 66 CRSMR---TFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRA 121 >gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 252 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 64/128 (50%), Gaps = 11/128 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---------KPDVIIMDI 54 ++++VED ++ + +E GY +G AL L +Q + D++++D+ Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDL 79 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 L +++GL+I + ++ + IP++ ++A A + D + G + Y++KP S+ + Sbjct: 80 MLPQVNGLDICRLLRYHGNI--IPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137 Query: 115 TIKKYIGE 122 + I Sbjct: 138 RCRALIRR 145 >gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1066 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNE+N + RD ++ G++ + NG +A++L Q + D++ MD Q+ E+ G+E Sbjct: 939 RILVAEDNEINQLVMRDWLDEMGHMVICVPNGRKAIDLLSQGRFDLVFMDAQMPEMDGIE 998 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ IP++A+TA+A+KGD ER G + Y+SKP+ + ++ Sbjct: 999 ATRIIRRSPPQGVDPAIPIVALTAYALKGDRERFLAAGMDDYLSKPLDFEELHRILAEF 1057 >gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 336 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 59/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ L D ++ SG L +G AL+ A Q +PD++++D + + G E+ Sbjct: 17 VLIVDDVPDNLSLLHDALDESGCTVLVALDGASALQRAAQARPDIVLLDAMMPGMDGFEV 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D+ IP+I +T + G Y++KPI + + ++ Sbjct: 77 ARRLKADATTAHIPIIFMTGLTETEHLVAALEAGGTDYVTKPIRPKEVLARMHVHL 132 >gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 1095 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 74/115 (64%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDN +N + +++++ + +G+EA+ LA++ K D++ MDIQ+ + G E T Sbjct: 776 LIVEDNAINQIVLQNMLKQFNISSDFANDGLEAVNLAKKKKYDIVFMDIQMPNMDGYEAT 835 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+++ E ++P+IAV+A A K D ++ + G +++KP+S++ + + K+I Sbjct: 836 RQLRKIPEYTDVPIIAVSAHAFKTDADKSLEAGMNDHLTKPVSINDLFKALSKWI 890 >gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto BEST195] Length = 289 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN + G+ A +G+E + + D+II+DI L + G+ Sbjct: 64 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 123 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E +P+I +TA + D+ + G + Y++KP S + IK I Sbjct: 124 ICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 179 >gi|218963798|gb|ACL13561.1| CopR [Pseudomonas fluorescens] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + + +G+ + NG +AL+ A D++I+D+ + + G E Sbjct: 2 RLLVAEDEPKIGIYLQQGLTEAGFNVDRFTNGKDALQHALSEAYDLLILDVMMPGLDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + +PV+ +TA D + + G + Y+ KP + S + ++ + Sbjct: 62 VLQKVRASG--KNVPVLFLTARDRVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRR 118 >gi|256424519|ref|YP_003125172.1| histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039427|gb|ACU62971.1| histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1306 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED+E +D + + + NG + + P++I+ D+ + E+ GLE+ Sbjct: 1062 LLIEDSEDFRFYLKDNLGVH-FHIIDAANGKLGWAILQHTVPNLIVSDVNMPEMDGLELC 1120 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+++ L +PVI +TA A + D+ G YI+KP + + + I+ + + Sbjct: 1121 RRIRQNQRLAHLPVILLTARASEEDQLEALDNGATDYITKPFNYEVLLSRIRNIVSQ 1177 >gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621] gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621] Length = 242 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + KL ++ GY LQ +G E LE+ R+ +I++DI + +I G+ Sbjct: 14 TILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIH 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 74 MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129 >gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+I+ED E + + +I ++ G E L ARQ PDV+++D+ L IS Sbjct: 1 MENKVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + +++ E+ ++ +I +TA D+ + + G + Y+ KP + + + K + Sbjct: 61 GFQVCETLRK--EMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1] gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1] Length = 243 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 54/118 (45%), Gaps = 2/118 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++V+D D + GY +G+ L +PD +++D+ + + GL Sbjct: 19 QRILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVMMPVLDGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q++ + P++ +TA + + G + Y+ KP +L + ++ + Sbjct: 79 GVCRQLRAMGD--RTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALL 134 >gi|160889014|ref|ZP_02070017.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492] gi|317479297|ref|ZP_07938432.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156861481|gb|EDO54912.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492] gi|316904585|gb|EFV26404.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL + +++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM-DIGSYNLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + +IP+I +TA + D G + YISKP SL +K + Sbjct: 64 MASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 >gi|146301096|ref|YP_001195687.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae UW101] gi|146155514|gb|ABQ06368.1| multi-sensor hybrid histidine kinase/response regulator [Flavobacterium johnsoniae UW101] Length = 1189 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 KKV+IV+D+ N+ +E + +G +A+++ ++ DV+++D+ + + G Sbjct: 1067 KKVLIVDDDVRNIYSLTKALEVFKMTIITAFDGNDAIKVLSENPDTDVVLLDMMMPHMDG 1126 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + + +PVIAVTA AM GD E+ K G YI+KP+ + + ++ ++ Sbjct: 1127 YETAEKIRANPKFLNLPVIAVTAKAMTGDREKCIKAGASDYITKPVDVDQLLSLLRVWL 1185 Score = 82.1 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 6/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED+ K GY + G AL +KP +++DI+L SG E+ Sbjct: 800 ILIIEDDINFAKSLLAFTRQKGYKGIVAVRGDYALNFTLLYKPVGVLLDIELPVKSGWEV 859 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS---IFMETIKKYIG 121 +++K +E + IPV +++ + ++ G ++ KP++ I+ I Sbjct: 860 LEELKNHAETKHIPVHIMSSHKL---KQESLLKGAVDFLDKPVAFDKIPDVFLRIEHIIN 916 Query: 122 E 122 + Sbjct: 917 K 917 Score = 63.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 6/106 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIAL---QTRNGMEALELARQHKPDVIIMDIQLQEI 59 +KV+I+EDN + K +ET + + +G++AL + + D +I+D+ + + Sbjct: 920 QKVLIIEDNPKHAKALAYFLETYNINSEIKSEVADGIQAL---GKTEVDCVILDMGIPDK 976 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 +I +K++ L+++PVI T ++ EE K ++ I K Sbjct: 977 QAYQILDGVKKNPGLEKLPVIVFTGKSLSLKEEVKIKKYADSIIVK 1022 >gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + P I +TA D + + G Y+ KP S + + ++ + + Sbjct: 84 VLRALRTAHQS---PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139 >gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB] gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + G+ G +AL L D++++D+ L ++SG + Sbjct: 2 KILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGLPDMSGFD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ ++PV+ +TA + + D + G + Y++KP S + I+ + Sbjct: 62 VCRALR---RYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRR 117 >gi|319640058|ref|ZP_07994785.1| sensor protein [Bacteroides sp. 3_1_40A] gi|317388336|gb|EFV69188.1| sensor protein [Bacteroides sp. 3_1_40A] Length = 1306 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN + + +++ Y +G +A + H+ D+II D+ L +I+G E Sbjct: 1056 TLLLIDDNAELLYIMKEMF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1114 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IK D IPVI +TA D G + YI+KP + + + I Sbjct: 1115 LCTRIKSDLRFNHIPVIILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1172 >gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 247 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + L +E G+ +GM R +P ++++DI + E+ Sbjct: 1 MNPSILVVDDDPVVRNLVSQYLEGRGFKVATLEHGMALQSKLRDERPALVVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA A D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + + SGY+ NG++ L LA QH +++I+D+ L G E Sbjct: 2 RILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNLPGKDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ + + V+ +TA D+ + G + Y+ KP + ++ + + Sbjct: 62 VLEQLRRNGTQR---VMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRS 118 >gi|21230253|ref|NP_636170.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21111797|gb|AAM40094.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E G+ +G++ LA ++ DV+++D+ L + G+E+ Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 82 CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138 >gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9] gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum SS9] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + ++P++ +TA + D + G + Y+ KP + + I+ + Sbjct: 66 ICRRLRNANN--KLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122 >gi|329961774|ref|ZP_08299805.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531515|gb|EGF58355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1327 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IVEDN+ + ++ Y NG EAL L ++ P++I+ DI + E+ G Sbjct: 1067 QKILIVEDNDELRAYLLQCLSST-YNVQVCSNGKEALVLVKEFWPELILSDIMMPEMGGD 1125 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK D E IPV+ +TA A + + G + YI KP SL+I +I + Sbjct: 1126 ELCSAIKNDMETSHIPVLLLTALADEKHILEGLQIGADEYIVKPFSLNILKASIANLLAN 1185 Query: 122 EA 123 A Sbjct: 1186 RA 1187 >gi|313897646|ref|ZP_07831188.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. HGF2] gi|312957598|gb|EFR39224.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. HGF2] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++ED+ ++ ++ +GY ++ RNG+E + L PD+I++D+ L +I Sbjct: 1 MHDKILLIEDDASIIRFLSLSLDKNGYKVIEARNGIEGISLFMSDNPDLILLDLGLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +QI+ SE +P++ V+A + ++ G + Y++KP ++ + ++ + Sbjct: 61 GSEVLRQIRSQSE---VPILVVSARGQEREKVEALDLGADDYVTKPFHINELLARVRVAL 117 Query: 121 GE 122 + Sbjct: 118 RK 119 >gi|310815788|ref|YP_003963752.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308754523|gb|ADO42452.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 243 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IV+D+ L + G+ + E ++ PD++++D+ L + SG Sbjct: 1 MNHILIVDDDPEIRSLLSRYLSGQGFRVTMAASRRECMQRLSHETPDLVVLDVLLPDGSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +++ S +PV+ +TA D + G + Y+ KP + + IK + Sbjct: 61 LEMCREL--SSANPHVPVVLLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED + + +E G+ A NG A E Q D+I++D+ L + G+E Sbjct: 6 HVLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + +P+I +TA D G + YI+KP ++ + I+ + Sbjct: 66 ICRRVR---TVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRR 121 >gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C] gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C] Length = 1828 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V+IV+D+ N+ ++E G L NG E +E+ Q+ V++MDI + E+ G Sbjct: 1708 RVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQNDDVAVVLMDIMMPEMDGY 1767 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P+IA+TA AMKGD E+ G Y++KP+ + +++++ Sbjct: 1768 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLTVMEQHMR 1826 >gi|296447290|ref|ZP_06889218.1| response regulator receiver protein [Methylosinus trichosporium OB3b] gi|296255155|gb|EFH02254.1| response regulator receiver protein [Methylosinus trichosporium OB3b] Length = 123 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 77/122 (63%), Positives = 106/122 (86%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V+IVEDNELNMKLF DL+E +G+ LQT++G+EA+ LAR+H PD+I+MDIQL E+S Sbjct: 1 MQKTVLIVEDNELNMKLFNDLLEANGHATLQTKSGVEAIALARRHSPDLILMDIQLPEVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+T+ +K+D EL+ IP+IA+TAFAMKGDEE+IR+GGCEAY+SKPIS++ F+ET+ ++ Sbjct: 61 GLEVTRWLKDDEELRSIPIIAITAFAMKGDEEKIRQGGCEAYLSKPISVARFLETVNAFL 120 Query: 121 GE 122 + Sbjct: 121 AD 122 >gi|225028286|ref|ZP_03717478.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353] gi|224954332|gb|EEG35541.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 +DN ++ + L+ GY+ NG++ALE+ + D+II+DI + + G + +++ Sbjct: 2 DDNPEIREIIQVLLGGEGYLVETAGNGVKALEMLENREYDLIILDIMMPGMDGYQTCRKM 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +E+S P++ ++A D+ G + Y++KP S + + K I Sbjct: 62 REES---NAPILFLSARTKDSDKTLGFSSGGDDYLAKPFSYNELISRAKALIRR 112 >gi|160884454|ref|ZP_02065457.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483] gi|237718085|ref|ZP_04548566.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260174656|ref|ZP_05761068.1| two-component system response regulator [Bacteroides sp. D2] gi|293369752|ref|ZP_06616328.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|299145993|ref|ZP_07039061.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23] gi|315922919|ref|ZP_07919159.1| two-component system response regulator [Bacteroides sp. D2] gi|156110193|gb|EDO11938.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483] gi|229452506|gb|EEO58297.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292635174|gb|EFF53690.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|298516484|gb|EFI40365.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23] gi|313696794|gb|EFS33629.1| two-component system response regulator [Bacteroides sp. D2] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K V++VED + + +D +E + +I +G E L L + PDV++ D+ + Sbjct: 1 MSKNKITVLLVEDEQTLAMIIKDTLEENDFIIHTANDGEEGLSLFFELHPDVLVADVMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G E+ ++I++ ++ PV+ +TA + D + G Y+ KP + + IK Sbjct: 61 KMDGFEMVRRIRQTD--KQTPVLFLTARSAINDVVEGFELGANDYLKKPFGIQELIIRIK 118 Query: 118 KYIGEA 123 +G+A Sbjct: 119 ALMGKA 124 >gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3] gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 67 ICRRLRQTGN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123 >gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 242 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + KL ++ GY LQ +G E LE+ ++ +I++DI + +I G+ Sbjct: 14 TILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIH 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 74 MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129 >gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ +D++ +L +E G+ ++ +G EA + + D+ ++DI + G Sbjct: 1 MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+TK+IKE +IPV+ VTA D+ + G + Y+ KP + +K + Sbjct: 61 WELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|293371358|ref|ZP_06617795.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|294810799|ref|ZP_06769445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|315919426|ref|ZP_07915666.1| conserved hypothetical protein [Bacteroides sp. D2] gi|292633718|gb|EFF52273.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|294441987|gb|EFG10808.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|313693301|gb|EFS30136.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1358 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDN+ ++ +E Y ++ +G E A + P++II DI + ++ G+ Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++IK + + IPVI +TA + + G ++Y+SKP + + M I+K I + Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224 >gi|210610549|ref|ZP_03288475.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787] gi|210152408|gb|EEA83414.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + +T Y L +G EAL+ KPD+I++DI + + GL Sbjct: 6 KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKV-ACKPDLILLDINMPGMDGLT 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+E P++ +TA D+ + G + YI KP L I ++ Sbjct: 64 VCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119 >gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ + + SG++ +G E L+ A + DVI++DI L + Sbjct: 1 MSKRILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++ + ++ ++A + D G + Y++KP S + IK I Sbjct: 61 GFAVCKELRAQNI--STYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAII 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|307154354|ref|YP_003889738.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306984582|gb|ADN16463.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 355 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ + GY + +G +AL + + P++I++D+++ + G E+ Sbjct: 12 ILIVDDIPENLEILFKSLRDQGYEVRRVLSGKQALMVVKAEPPELILLDVKMPNMDGYEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K +SE EIPVI ++A D+ + G YI+KP L + I+ + Sbjct: 72 CQKLKANSETAEIPVIFLSALNEVFDKVKAFTVGGVDYITKPFHLEEVLSRIETQL 127 >gi|298385015|ref|ZP_06994574.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] gi|298262159|gb|EFI05024.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 1_1_14] Length = 1511 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ R + ++ Y ++ GME A ++ PD+II D+ + E G+E+T Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1294 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1295 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1349 >gi|284990061|ref|YP_003408615.1| response regulator receiver modulated diguanylate cyclase [Geodermatophilus obscurus DSM 43160] gi|284063306|gb|ADB74244.1| response regulator receiver modulated diguanylate cyclase [Geodermatophilus obscurus DSM 43160] Length = 767 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 60/111 (54%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+E+ +L R +E++G + +G EAL+ + PDV++ D+ + + G + Sbjct: 12 LVVDDDEMVAELVRAGLESAGLTVVTAADGHEALDRLAEAVPDVVVSDVNMPGMDGFALV 71 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++ + + +P++ +++ + + D + G + Y+ KP L + + Sbjct: 72 SRLRAEPATRRVPLVFLSSRSQRDDVLTGLRLGADDYVRKPFDLDELVGRV 122 >gi|251790356|ref|YP_003005077.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247538977|gb|ACT07598.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 245 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED ++ R + +G L +G +ALEL KPD++++D+Q+ + G ++ Sbjct: 18 VLIAEDEPEIAEILRAYLTRNGLRTLHAADGRQALELHLSMKPDLVLLDVQMPLVDGWQV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ + PVI +TA D+ + G + Y+ KP + + + ++ + A Sbjct: 78 LSGIRLRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133 >gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8] gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8] gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+I++D++ L + + A G E + + + ++I+DI + + Sbjct: 1 MKHKVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++I+E +PV+ +TA + + + G + Y++KP + F+ + I Sbjct: 61 GFQVLEKIRE---TNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] Length = 219 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VEDN ++++E +GYI + EAL + DVII+D+ L +I G Sbjct: 2 KVLLVEDNIGLNASLKEILELNGYIVDGAFDADEALNFLQNSFYDVIILDVMLPDIDGFT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I+E + PVI +TA D+ + + G + YI+KP + + IK + Sbjct: 62 LLKLIREKGI--KTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVARRS 119 >gi|167762881|ref|ZP_02435008.1| hypothetical protein BACSTE_01245 [Bacteroides stercoris ATCC 43183] gi|167699221|gb|EDS15800.1| hypothetical protein BACSTE_01245 [Bacteroides stercoris ATCC 43183] Length = 375 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 63/113 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + NG +ALE + +PD++++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFAIATANNGRQALEQVDKERPDLLLLDVMMPDLSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++K + + +IP+I +TA D + + G +ISKP + + + Sbjct: 71 VAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQAGASDFISKPFNKEELIIRV 123 >gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++D++ L R + A +G + L + +++ +I++D+ + + Sbjct: 1 MSYKILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P++ +T+ + R + G + Y++KP + + + I Sbjct: 61 GFQTMEKIRQ---TSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + + ++ GY NG LE A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E ++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVARRVRE---VKSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|188995632|ref|YP_001929884.1| putative DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis ATCC 33277] gi|33411668|dbj|BAC81440.1| regulator of gingipain and black pigmentation [Porphyromonas gingivalis] gi|188595312|dbj|BAG34287.1| putative DNA-binding response regulator/sensor histidine kinase [Porphyromonas gingivalis ATCC 33277] Length = 961 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ L L+ Y L NG E + LA +H PD+II DI + + G+E Sbjct: 698 TILLVEDNKDI-NLLVKLLLCDRYNVLSAANGKEGIALATEHIPDIIITDIMMPIMDGIE 756 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T ++K+ L IP++A+TA + + D K G +Y+ KP S + I++ + Sbjct: 757 MTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLL 813 >gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W] gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W] gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|29349519|ref|NP_813022.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29341428|gb|AAO79216.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1511 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ R + ++ Y ++ GME A ++ PD+II D+ + E G+E+T Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1294 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP+I +TA + + G + YI+KP S + ++ + Sbjct: 1295 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1349 >gi|22450197|dbj|BAC10587.1| sensory transduction histidine kinase/response regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 258 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 17/135 (12%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-------------QHKPDVII 51 V++ EDN+LN + ++ GY +G EAL+ R + DV++ Sbjct: 105 VLLAEDNDLNREFLSFFLQERGYEVHLAIDGQEALDRLRGGCTPDSGIGGMQRPPFDVVL 164 Query: 52 MDIQLQEISGLEITKQIKEDSELQ----EIPVIAVTAFAMKGDEERIRKGGCEAYISKPI 107 MD+Q+ +SGLE T++I+E + ++PVIA+TA AM+GD +R G + +++KP+ Sbjct: 165 MDVQMPVVSGLEATRRIREAAAQGAAWADVPVIALTAHAMQGDRDRFLAEGMDDFVAKPV 224 Query: 108 SLSIFMETIKKYIGE 122 + I++ + Sbjct: 225 NREALFAAIERQVAR 239 >gi|27378817|ref|NP_770346.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27351966|dbj|BAC48971.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED++ L + + + NG E Q++ D+I++D+ L GL + Sbjct: 42 ILIVEDDQETRNLVARYLRENSFNVGMAANGREMDRYISQNRVDLIVLDLMLPGEDGLSL 101 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ P+I +TA D + G + Y+ KP + + I + Sbjct: 102 CRRLRVDT---TTPIIILTAKGDDVDRILGLEMGADDYLPKPFNPRELLARINAVLRR 156 >gi|315647309|ref|ZP_07900422.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277511|gb|EFU40840.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D++ ++L RD +E + + + +A ++ +Q I++DI + +G E Sbjct: 6 TVLVVDDDQSIVELLRDFLENDNFHVMTAGDTEQAWDMFKQQPVHCIVLDIMMPGQNGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +S +P++ ++A + D+ R G + YI K S + +K + + Sbjct: 66 LCRRIRGES---SVPILFLSARSHDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS 122 >gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML+K++IV+D + L ++ + +G EAL D+ I+DI L +IS Sbjct: 1 MLEKILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I + I+ PVI +TA + D+ G + YI+KP + +K + Sbjct: 61 GLSICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1476 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA + + + G AYI+KP S + I + + E Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 >gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 268 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + ++ + +G+ Q G +A++ R+ PDV+++D+ L E+ GLE Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 101 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ + ++ +TA + D+ G + YI+KP S+ + + + Sbjct: 102 VCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157 >gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 572 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++ EDN N KL +++ G A NG+EAL L ++ D+I+MD Q+ E+ G Sbjct: 450 QKILVAEDNVGNQKLILGMLKKIGLHADTANNGIEALNLFQKGGYDLILMDCQMPEMDGF 509 Query: 63 EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T +I++ + P+IA+TA +++G ER + G + Y+SKP+ + T+ K+ Sbjct: 510 ETTAEIRKLEKKTGTHTPIIALTALSLQGARERCLEVGMDDYLSKPLEIKPLAATLSKW 568 >gi|254421727|ref|ZP_05035445.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189216|gb|EDX84180.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 381 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 64/113 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L D + Y + +G A+++A+ PD+I++DI++ ++ G E+ Sbjct: 13 ILIVDDQPENLQLLLDTLSRQSYELRRVLSGQLAIQVAQFDPPDLILLDIRMPDMDGYEV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +Q+K + ++IPVI ++A D+ + G Y+SKP + + ++ Sbjct: 73 CRQLKTNKRTRDIPVIFLSALDDPVDKVKAFDVGGADYVSKPFQVPEVLARVR 125 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED+ +N KL L++ G+ NG +A+ + + D+I+MD+Q+ E+ GLE Sbjct: 1082 KILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVNERKNREFDLILMDVQMPEMDGLE 1141 Query: 64 ITKQIK--EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI+ E + +P+IA+TA AMKGD ER + G + Y+SKP+ + TI++ + Sbjct: 1142 ATRQIREYEQETGEHVPIIAMTAHAMKGDRERCLEAGMDGYVSKPVRVRELFSTIEECL 1200 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 +V+IV+DN N ++ +++ + G +AL++ +H D++++D + Sbjct: 936 RVLIVDDNLTNCQILEEMLGSWNMQTQSINRGSDALDVMHASQQSKHPFDLVLVDANMPV 995 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + K IK+DS L ++ +T+ +G+ R ++ G A++ KP+ S +I + Sbjct: 996 MDGFSVAKAIKQDSTLGSAVIMMITSSDRQGEISRCKELGIAAHLIKPLKQSELFNSIAE 1055 Query: 119 YIG 121 +G Sbjct: 1056 TLG 1058 >gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile 630] gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-66c26] gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile CIP 107932] gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-63q42] gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-76w55] gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-97b34] gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-37x79] gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-32g58] gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + L D ++ G+ L +G +EL++Q PD+II+DI + +++G Sbjct: 1 MSKILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQE-PDLIILDIMMPKMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I++D P+I ++A + D+ + G + Y++KP L M I+ + Sbjct: 60 FEVCQAIRDDVL---CPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|313905958|ref|ZP_07839313.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469218|gb|EFR64565.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++VED+ L + Y L NG A+ A H PDVI +D+ L ++ Sbjct: 1 MSKASILVVEDDPPVRNLITTTLGMHQYEYLVAGNGQTAIMQAASHNPDVIFLDLGLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+++ ++++ EIP+I ++A + + D+ G + Y++KP S+ + ++ Sbjct: 61 DGVDVIRKVR---TWTEIPIIVISARSEEADKIEALDAGADDYLTKPFSVEELLARLRVS 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|218246197|ref|YP_002371568.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801] gi|218166675|gb|ACK65412.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 8801] Length = 715 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 61/115 (53%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D N++L RD ++ GY GM AL A+ D+I++DI+L + G EI Sbjct: 10 LIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVTDLILLDIKLPDYDGYEIC 69 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + IPVI ++A D+ + G YI+KP + + + ++ Sbjct: 70 RRLKADEQTAHIPVIFLSALNETFDKVQGFTVGGADYITKPFQIEEVLARVATHL 124 >gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator [Cellvibrio japonicus Ueda107] gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator [Cellvibrio japonicus Ueda107] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D++ +L + + G+ +G +A+EL Q +I++D+ L SG Sbjct: 1 MLKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K +++ S+ PVI +TA D + G + Y++KP + I+ + Sbjct: 61 FDVLKILRQHSQT---PVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 62 VLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D + ++ Y + NG+EALE+ R+ + ++++DI + + G Sbjct: 1 MYNILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E +P+I ++A + D+ G + YI+KP + + + + Sbjct: 61 TKTTIKIRE---TSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+ED + + +GY+ G + L LARQ D++I+D+ L E+ G Sbjct: 2 RLLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPELDGWG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S + ++ +TA D + G + Y+ KP + I+ + Sbjct: 62 VLQRLRAESSTR---IMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR 117 >gi|66769754|ref|YP_244516.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992968|ref|YP_001904978.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|66575086|gb|AAY50496.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734728|emb|CAP52938.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E G+ +G++ LA ++ DV+++D+ L + G+E+ Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 82 CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 138 >gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + + L +D + GY L NG + + + +PD+I++DI + E+ G Sbjct: 1 MSKILIIDDEKELVALLQDELTERGYQVLAAHNGADGVT-LSKKQPDLIVLDIMMPEMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+++ P++ ++A + D+ R G + YISKP L + I + Sbjct: 60 FEVCRKIRDEVL---CPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1092 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 72/116 (62%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN +N ++ ++ SG+ +G A+E + H D+I MDIQ+ + G+ Sbjct: 844 ILIVDDNTINRQVASQILMKSGFKTDLAFSGPAAIEKVKNHDYDLIFMDIQMPVMDGVTA 903 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++IK+ + + P++A+TA++MK D +R G + Y++KPI S+ +E I++ + Sbjct: 904 TREIKKLPK-KIPPIVAMTAYSMKEDRQRFLDLGMDDYLAKPIVSSLLLEVIQQNL 958 >gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + + G E Sbjct: 2 RLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 2010 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 +K +IV+D+ N+ ++E G + NG +A+ L + D+++MDI + E+ G Sbjct: 1890 RKALIVDDDMRNIFALATVLEDHGMRHVWADNGRDAIRLVETDSEIDIVLMDIMMPEMDG 1949 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L T +I++ + +P+IAVTA AMKGD ER + G Y+SKP++ + + ++ Sbjct: 1950 LVTTSEIRKLPVGRTLPIIAVTAKAMKGDRERCIEAGAWDYLSKPVNREDLLAVLHAWLH 2009 Query: 122 E 122 Sbjct: 2010 R 2010 Score = 98.3 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Query: 4 KVM-IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+ IVE++ D G+ L T G AL LA Q KPDVI +D+ L ++ G Sbjct: 1625 RVLMIVENDLAFAHFLLDAAREQGFKGLVTPLGAPALTLAEQFKPDVITLDLFLPDMDGW 1684 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + ++K D + IPV ++ ER K G A+++KPI ++ Sbjct: 1685 RVLGRLKNDMATRHIPVCVIS---TDESRERALKAGAFAFLTKPIQAREILD 1733 >gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 220 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED+ + + GY ++G AL D+ ++D+ L + GL+ Sbjct: 2 RLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +PV+ +TA D G + Y+ KP L+ ++ + + Sbjct: 62 VLRRLR--DSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRS 119 >gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEIS 60 + +++IV+D++ L D +E G+ + +G EALE + + ++I+DI + ++ Sbjct: 1 MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +++++ + P+I V+A + D + G + YI KP + + +K ++ Sbjct: 61 GLELCRRVRDQLKA---PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] Length = 1072 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 KV++ EDNE+N ++ +L+E +G + NG EALE + D++ MD+Q+ Sbjct: 696 KVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALEHLEAMAKGESHFDIVFMDLQMPV 755 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E + +I+ +S IP+IA+TA AM + ER G +ISKPI I TI+K Sbjct: 756 MDGYEASHRIRANSSYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815 Query: 119 YIGE 122 + Sbjct: 816 WCPR 819 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 ++++V+DNE +++ ++++ T +G +A++ R+ K D+I MD + E Sbjct: 546 RILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDCIRKASEQREKFDLIFMDWNMPE 605 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E ++ I+E + P ++ VTA+ + + ++SKP+ S + + Sbjct: 606 MDGIETSRLIRESFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFDLLV 665 Query: 118 KYIGE 122 + G Sbjct: 666 ELFGR 670 >gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074] gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1827 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1705 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1764 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ + G Y++KP+ + ++ ++ Sbjct: 1765 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVMEGWMS 1824 Query: 122 E 122 + Sbjct: 1825 Q 1825 >gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED + + + SGY +G E L L QH D++I+D+ L E++G ++ Sbjct: 3 ILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELNGWQV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E+PV+ +TA D + + G + Y+ KP S + +K + + Sbjct: 63 IQTLRQ---FSEVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRS 118 >gi|239907909|ref|YP_002954650.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797775|dbj|BAH76764.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1126 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN N ++ ++ G G A+++ D++ MD+ + ++ G E Sbjct: 867 RILVVDDNTTNRQVATGILTKLGLSVETVSGGAAAIQVLELINFDIVFMDVLMPDMDGYE 926 Query: 64 ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ IP+IA+TA AM GD ++ G + YISKPI L + + K++ Sbjct: 927 ATKRIRDPLSKVINHNIPIIAMTANAMTGDRKKCLDAGMDDYISKPIMLKNLTQVLAKWL 986 Score = 94.0 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 +V+IV+DN N + L+ T G + AL+ + + ++D ++ Sbjct: 717 RVLIVDDNATNRDILYSLMTTWGMRPSTVIDAPSALQALYKALNENNPFIIAVIDSKMPG 776 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G + + IK D L ++ +T+ + E +K G AY +KPI S F + + Sbjct: 777 MNGEALGRAIKADPRLSRTKMVILTSLGQNENVEIYKKVGFSAYANKPIRQSDFFKILSS 836 Query: 119 YI 120 I Sbjct: 837 VI 838 >gi|146305444|ref|YP_001185909.1| response regulator receiver protein [Pseudomonas mendocina ymp] gi|145573645|gb|ABP83177.1| response regulator receiver protein [Pseudomonas mendocina ymp] Length = 121 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 70/119 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ M ++E G+ L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+Q+ +D+E IPVI VT + D+ ++ G + Y++KPI ++T+ + Sbjct: 61 FQATRQLTKDAETSHIPVIIVTTKDQETDKVWGKRQGAKDYLTKPIDEDTLLKTLNAVL 119 >gi|51209895|ref|YP_063559.1| tctD transcriptional regulator [Gracilaria tenuistipitata var. liui] gi|50657649|gb|AAT79634.1| tctD transcriptional regulator [Gracilaria tenuistipitata var. liui] Length = 214 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 61/119 (51%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++++D+ + + + G+ T NG + L+ KPD+II DI + +IS Sbjct: 1 MKKKILLIDDDINLLNSMASYLISEGFTIDITTNGDKVLKNLNIIKPDLIITDIMMPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ KQI+ + + PVI +TA M D + GC AYI+KP + I Sbjct: 61 GYDLIKQIRSNEKWCHTPVIFLTAKGMTHDRILGYELGCNAYIAKPFYPEELISIINNI 119 >gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] Length = 1072 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 KV++ EDNE+N ++ +L+E +G + NG EALE + D++ MD+Q+ Sbjct: 696 KVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALEHLEAMEKGESHFDIVFMDLQMPV 755 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E + +I+ +S IP+IA+TA AM + ER G +ISKPI I TI+K Sbjct: 756 MDGYEASHRIRANSSYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815 Query: 119 YIGE 122 + Sbjct: 816 WCPR 819 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 ++++V+DNE +++ ++++ T +G +A++ R+ K D+I MD + E Sbjct: 546 RILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDCIRKASEQREKFDLIFMDWNMPE 605 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E ++ I+E + P ++ VTA+ + + ++SKP+ S + + Sbjct: 606 MDGIETSRLIRESFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFDLLV 665 Query: 118 KYIGE 122 + G Sbjct: 666 ELFGR 670 >gi|299146431|ref|ZP_07039499.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298516922|gb|EFI40803.1| putative two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1360 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDN+ ++ +E Y ++ +G E A + P++II DI + ++ G+ Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++IK + + IPVI +TA + + G ++Y+SKP + + M I+K I + Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226 >gi|270295880|ref|ZP_06202080.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270273284|gb|EFA19146.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 1354 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ + R + + L +G LA++ P++I+ DI + + G+++ Sbjct: 1105 LVVEDNQDIREYIRQSLGDD-FDILTAEDGSRGWTLAQERIPNIIVSDIMMPVMDGIQLC 1163 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K+D IPVI +TA D+E G ++Y++KP S + I + Sbjct: 1164 RLVKDDIRTSHIPVILLTAKDSLHDKEEGYTAGADSYLTKPFSAKLLHSRINNLL 1218 >gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 919 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN++N + + +G +G++ALEL Q D+++MDIQ+ E+ G E Sbjct: 678 RVLLAEDNQVNRLFLKHFLAEAGCQVRLAGSGLQALELLCQEPADLVLMDIQMPEMDGAE 737 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+E + +PV+A+TA++MKGD ER G + Y+SKP+ + +++ + Sbjct: 738 ATRRIREGEAGDAARAMPVVALTAYSMKGDRERFLSVGLDDYVSKPVDVDELFMVMRRVL 797 Query: 121 GE 122 Sbjct: 798 AR 799 >gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ ++P+I +TA + D + G + Y+ KP + + K + Sbjct: 67 ICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 >gi|126654707|ref|ZP_01726241.1| CheY subfamily protein [Cyanothece sp. CCY0110] gi|126623442|gb|EAZ94146.1| CheY subfamily protein [Cyanothece sp. CCY0110] Length = 122 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ +L L+ +G+ +G EALE + PD+II+D+ + +++G Sbjct: 1 MTTILLADDSTAQRELIAGLLIDNGFSVTTAIDGAEALEKLKSLAPDLIILDVVMPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + IK D + + IPVI + + D K G +AYI KP + T+K+ + Sbjct: 61 YQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLLR 120 Query: 122 EA 123 + Sbjct: 121 NS 122 >gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter ruber DSM 13855] gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM 13855] gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] Length = 247 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + + GY G L+ ARQ D++++DI+L ++SGLE Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ E+P++ +TA D R + G + Y+ KP + + I+ + Sbjct: 66 VCERLR--LHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRR 122 >gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I+ED E ++ GY +G + LE+A + D+I++D+ L ++G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P+I +TA D G + Y+ KP ++ + ++ Sbjct: 61 LEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1101 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 74/122 (60%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K++++V+D+ N++L R ++ Y +G EA++ RQ D+I+MD+Q+ + G Sbjct: 979 KRILVVDDSTDNLELIRLFLKRQPYTLEFAESGQEAVDKVRQRPSFDLILMDVQMPGMDG 1038 Query: 62 LEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + T+ I+ + ++L IP+IA+TA AM E + GC+ +++KPI + ++ +++ Sbjct: 1039 YQATRTIRLWEKANDLASIPIIALTAHAMPEHRENSLRAGCQEHLTKPIHKLVLIQELQR 1098 Query: 119 YI 120 ++ Sbjct: 1099 FL 1100 >gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I++D+ + + + L+E GY NG LE ++ ++I++D+ L +I+ Sbjct: 1 MACKILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNLPDIA 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K I+++SEL P++ ++A D+ + G + YI+KP + IK + Sbjct: 61 GEQLCKAIRKNSEL---PILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +M+VED ++ I+ +GY G A+E +P +I++D+ L + G Sbjct: 1 MRTIMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ S PVI +TA GD G + YI KP + I+ + Sbjct: 61 WEVLREVRNRS---TCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM 16795] gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM 16795] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++EDN+ KL ++ +GY + +G L++ D+II DI + + G E Sbjct: 4 ILVIEDNKNMRKLICATLKQNGYSTFEAEDGEVGLDVLDTTHIDLIICDIMMPNMDGYEF 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+ ++ E P+I VTA D+++ G + Y+ KPI + I + + Sbjct: 64 TETLR--DGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAILRRS 120 >gi|71907731|ref|YP_285318.1| PAS [Dechloromonas aromatica RCB] gi|71847352|gb|AAZ46848.1| PAS protein [Dechloromonas aromatica RCB] Length = 680 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISG 61 ++++VED +N + R+L+E + + NG +A+E+A D+I+MD+Q+ + G Sbjct: 560 RILLVEDEPINQMIARELLEDASLVVHVADNGQQAVEMALSTPSPYDLILMDVQMPVLDG 619 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I+E P+IA+TA A D + G ++SKP+ + E I K++ Sbjct: 620 IAAAHCIREKRPDLHTPIIALTANAFSDDRRKCLAAGMNDFVSKPVDPDVLFEIIWKWLS 679 Query: 122 E 122 + Sbjct: 680 K 680 Score = 77.5 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQEIS 60 ++V+D L + L++ G + +G EAL + H + +D+ + +++ Sbjct: 412 LVVDDLPLTQAVHSQLLKRIGLNPIAVMSGQEALTAVQIADRELHPFGIAFIDLHMPDLN 471 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ +I+ + + VTA ++ + + G A + KP SL+ E + + + Sbjct: 472 GLEVIAKIRALPLRYQPHCVLVTAAGIQSIVDEAKSVGYAAVLQKPASLAGLREIVSQLL 531 >gi|332992815|gb|AEF02870.1| Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase) [Alteromonas sp. SN2] Length = 331 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 6/125 (4%) Query: 1 MLKKV-----MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55 ML+ + ++V+D +N+++ + L+ + Y + +NG EA+ L Q +P +I++DI Sbjct: 1 MLRTIEKPTLLLVDDEPVNLRVLKQLL-AADYQLIFAKNGEEAIRLTSQRQPQLILLDIM 59 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + ++G E+ + +K + + IPVI VTA + DE + G YI+KPIS + Sbjct: 60 MPGLTGFEVCRILKGQDDTRHIPVIFVTALNDEHDEAEGFEVGAVDYITKPISPPVVKAR 119 Query: 116 IKKYI 120 +K ++ Sbjct: 120 VKTHL 124 >gi|328951840|ref|YP_004369174.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109] gi|328452164|gb|AEB07993.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109] Length = 357 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN +N + +E G+ A NG +AL + + D+I++DI++ E++G ++ Sbjct: 17 ILVVDDNRMNRLMLARGLEKQGHQAAFAENGRQALAMLAEQDFDLILLDIEMPEMNGYQV 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++PVI ++A R + G E Y++KP + + + + Sbjct: 77 LDHLAANVRWRDLPVIMISAVDEIDSVVRCIELGAEDYLTKPFNPVLLKARVDASL 132 >gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5] gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED E ++ + +E GY NG E LE A + ++++D+ L +SGLE Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGLSGLE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ Q+ PVI +TA D+ G Y++KP + + I+ + + Sbjct: 65 VLRRLRKTD--QQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121 >gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp. oral taxon 137 str. F0430] gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp. oral taxon 137 str. F0430] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+ +L RD +E SG+ + +G E +A ++++D+ L G Sbjct: 1 MTKILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I + ++++ +IP++ V+A D+ R G + YI KP S S +K +I Sbjct: 61 FAICRAVRKEL---DIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHIT 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|309792127|ref|ZP_07686599.1| OmpR subfamily [Oscillochloris trichoides DG6] gi|308225668|gb|EFO79424.1| OmpR subfamily [Oscillochloris trichoides DG6] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 54/107 (50%) Query: 17 LFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE 76 + + G+ +G EAL++A++ +PD+II+D+ + ++ G E+ + S L + Sbjct: 16 VVGRSLYDDGHTVRMAHDGEEALDMAQRQRPDLIILDVAMPKMDGFELCHTLHTRSNLAD 75 Query: 77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +PV+ +T D R + G + Y++KP L IK + + Sbjct: 76 VPVLFLTGRNTIEDRLRGFEEGADDYLTKPFDLRELKARIKALLRRS 122 >gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED+ + R +E G+ + E + Q +PD++++D+ L + +G Sbjct: 1 MQRLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPDGTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +QI+ ++ P++ +TA + G + YI+KP L + ++ + Sbjct: 61 FDLCRQIRVENGT---PILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|258514837|ref|YP_003191059.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] gi|257778542|gb|ACV62436.1| response regulator receiver modulated diguanylate cyclase [Desulfotomaculum acetoxidans DSM 771] Length = 314 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 74/124 (59%), Gaps = 3/124 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IV+D +++K+ +L+ Y L +G A+E+A +++PD+I+MD+ + + G Sbjct: 1 MNKVLIVDDVPVSIKVLGELL-KEHYEILVATSGSRAIEVALKNQPDLILMDVVMPGMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-- 119 LE +++KE++ EIPVI +TA + D + + G + Y+ KP + + +K + Sbjct: 60 LETCRRLKENTLTAEIPVIFLTAMSESSDVIKGFEVGGQDYVVKPFNKIEVIARVKNHME 119 Query: 120 IGEA 123 + ++ Sbjct: 120 LRKS 123 >gi|119468143|ref|ZP_01611269.1| sensory box/GGDEF domain/EAL domain protein [Alteromonadales bacterium TW-7] gi|119448136|gb|EAW29400.1| sensory box/GGDEF domain/EAL domain protein [Alteromonadales bacterium TW-7] Length = 735 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + + + T Y + +G +AL +PD+I++DI + ++G E+ Sbjct: 22 ILIVDDEPSNLHILVEGLSTD-YDVRISTSGEQALTFIESTRPDLILLDIMMPGMNGYEV 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K + + IP+I VTA + EE+ G YI KP L++ I+ +I Sbjct: 81 CTILKGKPKTKGIPIIFVTALTEEESEEKGFAMGAIDYIHKPYKLALVRARIRTHI 136 >gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120] Length = 290 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|254720404|ref|ZP_05182215.1| response regulator PleD [Brucella sp. 83/13] gi|265985422|ref|ZP_06098157.1| response regulator receiver modulated diguanylate cyclase [Brucella sp. 83/13] gi|306839019|ref|ZP_07471840.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] gi|264664014|gb|EEZ34275.1| response regulator receiver modulated diguanylate cyclase [Brucella sp. 83/13] gi|306405925|gb|EFM62183.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653] Length = 461 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPHTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+++EL R ++ Y AL A + D II+ L Sbjct: 160 ARILVVDEDELATARLRHIL-DENYRVDVASGAETALIRAIETDYDTIIVSASFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278 >gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + + GY ++ NG LE+A + + D+II+D+ L EI+G Sbjct: 1 MIKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++I+ + E+P+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRIR---RVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|119897782|ref|YP_932995.1| polar differentiation response regulator [Azoarcus sp. BH72] gi|119670195|emb|CAL94108.1| probable polar differentiation response regulator [Azoarcus sp. BH72] Length = 131 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 80/121 (66%), Gaps = 1/121 (0%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M+ ++++ EDN N++L R L+ +G+ + T +G+ ALE A++ PD+II D+Q+ + Sbjct: 1 MMGARILVAEDNLANLELVRYLLSRAGHEVITTADGLAALEEAQRAVPDLIISDLQMPRM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ +++ D L+ +PVIA+TAF+M GD ++ + G ++Y+SKP+ F+ ++ + Sbjct: 61 DGYQLLARLRGDPALRAVPVIALTAFSMPGDRVKVMQAGFDSYMSKPLVPETFVAQVEAW 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1118 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN N + ++ G + NG EA+E+ D++ MD ++ E+ G E Sbjct: 827 RVLLAEDNATNQIVGAMILRNLGCLVDVATNGREAMEMVDAFLYDMVFMDCEMPEMDGFE 886 Query: 64 ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T ++ + + +PVIAVTA AM+GD ER + G + YISKP+ L F +K+++ Sbjct: 887 ATAALRRRPDSKSRLPVIAVTAQAMQGDRERCLRAGMDDYISKPVKLEDFAAALKRWM 944 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V+IV+DN N + ++ + + +G EAL + I+D Q+ + Sbjct: 668 RVLIVDDNAANRLVLQEQLRSWRMRIGSCPSGAEALRALHTSHASGDPYRIAILDHQMPD 727 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGD-EERIRKGGCEAYISKPISLSIFMETI 116 + G + + IK D L+ I ++ +++ +GD ER++K G AY+ KP S + T+ Sbjct: 728 MDGEMLGRTIKADPLLRSIHLVMLSSLGQEGDLRERLQKIGFAAYLVKPARQSELLSTL 786 >gi|86136783|ref|ZP_01055361.1| response regulator [Roseobacter sp. MED193] gi|85826107|gb|EAQ46304.1| response regulator [Roseobacter sp. MED193] Length = 410 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 58/115 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ L ++ ++ G+ ++ +G A+E+ R+ PD+I+ D + ++GLE Sbjct: 7 RVLVVDDSRLQRRILVASLQKWGFDVVEAESGEAAMEICRKDPPDLILSDWMMPGMNGLE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + +E S I +T+ + K + G + +++KP+S I Sbjct: 67 FCQAFREQSRDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISA 121 >gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 633 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 66/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VEDN +N + ++ + G+ +G +A+ A + I+MD +L I G Sbjct: 515 RNVLLVEDNPVNQTVVEAMLRSLGFTVSIATDGAQAVRSAESLIFEAILMDCRLPIIDGY 574 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI++ E+P+IA+TA A++GD E G Y++KP + + +++++ Sbjct: 575 EATRQIRQLPGCGEVPIIALTANALQGDREACLAAGMNDYLAKPFKRNDLQQILQRWV 632 >gi|303243632|ref|ZP_07329973.1| response regulator receiver protein [Methanothermococcus okinawensis IH1] gi|302485874|gb|EFL48797.1| response regulator receiver protein [Methanothermococcus okinawensis IH1] Length = 124 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDNE + L + ++E + + L +G EA++L ++KPD++++DI + +SG Sbjct: 1 MAKILVVEDNEDILNLVKIILEVNNHDVLTASDGHEAIKLM-ENKPDLVLLDIMMPGMSG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ I+ + + PVIA+TA A K D E K + YI KP + I K +G Sbjct: 60 WDVLDIIRSRDKWKNTPVIALTALAQKKDIETGVKKHVDGYIVKPFEKKELLNIINKVLG 119 Query: 122 E 122 E Sbjct: 120 E 120 >gi|298374088|ref|ZP_06984046.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] gi|298268456|gb|EFI10111.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19] Length = 1359 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + + Y L +G +A +L + PD++I D+ + G+ Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1170 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D IPVI +TA + K + + G + YISKP ++ + + ++ I Sbjct: 1171 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1227 >gi|255013019|ref|ZP_05285145.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. 2_1_7] Length = 1359 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + + Y L +G +A +L + PD++I D+ + G+ Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1170 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D IPVI +TA + K + + G + YISKP ++ + + ++ I Sbjct: 1171 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1227 >gi|254712420|ref|ZP_05174231.1| response regulator PleD [Brucella ceti M644/93/1] gi|254715492|ref|ZP_05177303.1| response regulator PleD [Brucella ceti M13/05/1] gi|261217227|ref|ZP_05931508.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M13/05/1] gi|261320098|ref|ZP_05959295.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M644/93/1] gi|260922316|gb|EEX88884.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M13/05/1] gi|261292788|gb|EEX96284.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M644/93/1] Length = 462 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 3 KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+ D R ++ Y + AL A + D II+ Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYWVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWEDEGALVARALELGVNDYLMRPLEKIELFARLRTQIK 278 Query: 122 E 122 Sbjct: 279 R 279 >gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 220 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED + + + GY + +G A++L + D++I+DI L + G Sbjct: 1 MKKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+ +PV+ ++A DE + G + YI+KP + I + IK I Sbjct: 61 WSVLREIKK---YSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLI 116 >gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1407 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 69/118 (58%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDNE N ++ +L++ NG EAL L ++ D+++MD+Q+ + G+ Sbjct: 1074 ARILLVEDNEFNQQIAMELLQQMHLAVDLAENGAEALNLLEKNNYDLVLMDMQMPVMDGI 1133 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +++ + E+PV+A+TA ++ D +R G ++SKPI + +T+ K+I Sbjct: 1134 SATLELRRQARFAELPVVAMTANVLQADRQRCLDAGMNDFLSKPIEPELLWQTLLKWI 1191 Score = 94.4 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 V++V+DN+ ++ ++++ + + +EA+ ++ ++ MD + Sbjct: 927 HVLVVDDNDNARQVMNEMLDGMSFSVDVANSAIEAITAIELADRQRDPYKLVFMDWHMPT 986 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G++ +I+ ++ VTA+ G + KP++ S +T + Sbjct: 987 MNGIDACNKIQSLPLTAPPHLVLVTAYGRDEVFHNAENAGIRDVLVKPVTASTLFDTAIR 1046 Query: 119 YIG 121 IG Sbjct: 1047 VIG 1049 >gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 11 MVMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 71 GLQVLQRLRADNHT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 128 Query: 121 GE 122 Sbjct: 129 RR 130 >gi|222082916|ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727595|gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+ + +L++++G+ A +G E L +HK D+I++D L G Sbjct: 8 HILIVEDDTDIAHMLVELVKSNGFEATSAASGGEMDRLLARHKFDLIVLDGMLPGEDGFS 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ + IP++ +TA D + G + Y++KP + M IK + A Sbjct: 68 ICRRLRSS---RSIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSILRRA 124 >gi|218439743|ref|YP_002378072.1| response regulator receiver protein [Cyanothece sp. PCC 7424] gi|218172471|gb|ACK71204.1| response regulator receiver protein [Cyanothece sp. PCC 7424] Length = 121 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ V++VED +L + +GY + +G EA+E KPDVI+ D+ + ++ Sbjct: 1 MMTIVLVVEDTLSEQELISLYLRNAGYTVITANDGKEAMEKTLAQKPDVIVTDVVMPNMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + IK++ + Q++PVIA T+ + D K G + Y++KP + + ++ Sbjct: 61 GFELCRSIKKNPQTQKLPVIACTSKTQELDRLWGMKQGIDVYVTKPFTQEELVRAVRSV 119 >gi|88602714|ref|YP_502892.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] gi|88188176|gb|ABD41173.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1] Length = 393 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 +++IV+D+ + ++ + GY + + +ALE +H D+I++D+ + SG Sbjct: 6 ARLLIVDDDPAIREFLKNRLMMEGYEVSEAEDAEKALERLEEHPDTDLILLDVIMPGASG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + +KED +IPVI VTA + D+E + G Y++KP + I +I Sbjct: 66 FDLLRTLKEDRRYCQIPVIMVTALGLVQDKELAFRLGAGDYLTKPFDTREMLARIGTHI 124 >gi|29347164|ref|NP_810667.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339063|gb|AAO76861.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 921 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DNE L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 676 VLIIDDNEDIRSYVHTLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 734 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 735 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 790 >gi|302337571|ref|YP_003802777.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301634756|gb|ADK80183.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++ IV+D E G+ +G A + Q P +I++DI + ++ GL Sbjct: 5 KRIAIVDDEEALTATLAFAFRREGFEIELFHDGAAAWQHFSQRLPHLIVLDIMMPKMDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ SE ++P+I +++ + D + G + Y+SKP S+ + ++ + Sbjct: 65 TLCKLLR--SEGMQVPIIFLSSRDDEIDRLLGFESGGDDYLSKPFSVRELLARVRAVLRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ +D++ +L +E G+ ++ +G EA + + D+ ++DI + G Sbjct: 1 MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+TK+IKE +IPV+ VTA D+ + G + Y+ KP + +K + Sbjct: 61 WELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 +D ++ ++ +GY + +G EAL L Q +PD++++D+ L ++ G + +++ Sbjct: 2 DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAVCRRL 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +S +P+I ++A + G + Y+ KP S I + Sbjct: 62 RAESC---VPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRR 112 >gi|160887592|ref|ZP_02068595.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483] gi|156108003|gb|EDO09748.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483] Length = 1360 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDN+ ++ +E Y ++ +G E A + P++II DI + ++ G+ Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++IK + + IPVI +TA + + G ++Y+SKP + + M I+K I + Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226 >gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + ++++D+ L GL Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ E+P+I +TA + D + G + Y+ KP + + K + Sbjct: 67 ICRRLRQMGN--ELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123 >gi|332701444|ref|ZP_08421532.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551593|gb|EGJ48637.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 697 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 75/121 (61%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N + L++ +G+ G E LE+ + D ++MD+Q+ E+ G+E Sbjct: 565 RILVAEDNPINQIFIQALLQDAGHDVRIAPTGCEVLEVLARDCFDCVLMDVQMPEMDGME 624 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++I+ L +IP+IA+TA+AMK D+ERI G + Y++KP+ ++ F +++ + Sbjct: 625 TTRRIRAMAPPLCDIPIIALTAYAMKEDQERIMSAGMDGYVTKPVDIAEFSRVLREKLAH 684 Query: 123 A 123 A Sbjct: 685 A 685 >gi|302037442|ref|YP_003797764.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300605506|emb|CBK41839.1| putative Histidine kinase with protein phosphatase region [Candidatus Nitrospira defluvii] Length = 563 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 64/116 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ +D +N ++ L+ G+ + +G +A+ L Q +PD++IMD+ + E+ G + Sbjct: 2 KILVADDTIVNRRILEALLGKDGHTVVLAEDGKQAVALFEQEQPDLVIMDLMMPEMDGYQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK IK+ + + +PVI +TA + + G + +++KP + +I I + Sbjct: 62 ATKLIKQQTGSRFVPVIFLTAVTNEDVLAKCIAHGGDDFLTKPYNHTILRAKIAAW 117 >gi|298480780|ref|ZP_06998976.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. D22] gi|298273214|gb|EFI14779.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. D22] Length = 945 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 700 VLVIDDNADIRSYVRGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 758 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 759 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 814 >gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CMC 3f] gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1476 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 >gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 220 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + R + G+ +G AL A D++++D+ L + GL+ Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PV+ VTA D + G + Y+ KP L ++ I Sbjct: 62 VLRALRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 >gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 210 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++++D+ + L RD + GY L NG AL + Q PD+II D+ + E+ G Sbjct: 5 KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGRTALGVLEQDIPDMIICDVMMPEMDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q++++ +PV+ ++A D + G + Y+ KP + ++ + Sbjct: 65 TFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSL 122 >gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1011 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +M+ ED+ +N ++ ++ G+ NG EA+ L + + I+MD+Q+ + G+E Sbjct: 768 IMVAEDSPVNQRVISHVLHKMGHSFTIVENGQEAVTLWEKRNFNAILMDVQMPIMDGIEA 827 Query: 65 TKQIKEDSELQE--IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ +E +P+IA+TA AM+ D ER G Y+SKP+ + E + K+ Sbjct: 828 TRRIRALDTHRENPVPIIALTAHAMQSDRERCLDAGMNDYLSKPLDPGMLAEKLAKW 884 Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 16/122 (13%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59 V++V+D+ N + R+L+ + + ++G EAL + ++H +++ D+Q+ I Sbjct: 623 VLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNPIRLLLSDLQMPGI 682 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIFME 114 GL + +++ E P + + + +GG + ++ KP S ++ Sbjct: 683 DGLALAQRV-EKLCGSHPPAFILISSSQIE-----LEGGIAPSIVKDFLLKPFDPSHVLD 736 Query: 115 TI 116 + Sbjct: 737 CV 738 >gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 2037 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K V++V+D+ N+ E + +G EA+ + ++ D+++MDI + E+ G Sbjct: 1917 KNVLVVDDDVRNLFALTTAFERFHINTITAESGKEAMNILSENSDIDIVLMDIMMPEMDG 1976 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++I+ + + +P+IAVTA AMKGD E+ + G YI+KP+ + + ++ ++ Sbjct: 1977 YETMQKIRREHKNSALPIIAVTAKAMKGDREKCLEAGASDYITKPLKIDQLLSLMRVWL 2035 Score = 75.2 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIET-SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 KKV++VEDNE + +++ NG A++ D II D L +I Sbjct: 1769 TKKVLVVEDNEPDASQIARILDNGELIEMDFVENGKAAIDKVNSTAYDCIIADYMLPDID 1828 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM--ETIKK 118 G E + + PVI +A +E K + K ++ + ETI + Sbjct: 1829 GAEFVANMNTVNRHNATPVIVYSAKDFTNNERSKLKQYANKILLKGVNSLDLLLEETIMQ 1888 Query: 119 Y 119 Sbjct: 1889 L 1889 Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 3/108 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ K+ + G + + + +L ++ P + +D++L + SG + Sbjct: 1650 VLIVEDDVRFAKIMLEKAHEMGLKVVVATSFGDVFDLTNKYNPIAVTLDVKLPDASGWRV 1709 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 K D L+ IP+ ++ + + G ++ KP+ Sbjct: 1710 LDLFKNDINLRHIPIHLISG---EENRLLAMHRGARSFNLKPLKAEAL 1754 >gi|227515346|ref|ZP_03945395.1| two component response regulator [Lactobacillus fermentum ATCC 14931] gi|227086260|gb|EEI21572.1| two component response regulator [Lactobacillus fermentum ATCC 14931] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED + + ++ +GY NG EA++LA Q DVII+DI + +++G+E Sbjct: 3 ILLAEDEKQLSRALVTAMQANGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGIEA 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 KQ+++ + VI +TA A D+ G + Y++KP SL + ++ + Sbjct: 63 LKQLRQTGN--KTYVIMLTAMAEIDDKVTGLDAGADDYLTKPFSLKELLARLRSLERRS 119 >gi|86157034|ref|YP_463819.1| response regulator receiver domain-containing protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773545|gb|ABC80382.1| response regulator receiver domain protein (CheY-like) [Anaeromyxobacter dehalogenans 2CP-C] Length = 123 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 67/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ + + R ++ S Y + R+G E +E AR+ KPD+I+MD+ + + G Sbjct: 4 KKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGVEKAREEKPDLILMDVVMPRMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++++E E IPVI VT E GC Y++KPI+ + ++ +G+ Sbjct: 64 EACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCLGQ 123 >gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces tenjimariensis] Length = 234 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ VED+++ + + +E G+ +G+ LE R +PD+ ++D+ L + G+ Sbjct: 5 HVLFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRADRPDIALLDVMLPGMDGVS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP ++ + I+ + Sbjct: 65 LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 120 >gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Rv] gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium bovis AF2122/97] gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T17] gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium tuberculosis 210] gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN R506] gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN V2475] gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis] gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium tuberculosis W-148] gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 785 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 5/122 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ EDN +N +L R ++E+ G NG +A+E + D++ MD Q+ E+ G E Sbjct: 664 VLLAEDNPVNQELGRLVLESLGCKVDVVGNGRQAVEAVSDREYDLVFMDCQMPEVDGYEA 723 Query: 65 TKQIKED-----SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I++ + + IPVIA+TA AM GD E G + Y SKP + + ++ Sbjct: 724 TRSIRQREAETGEQTRHIPVIALTAHAMDGDRETCLSAGMDDYASKPFTPIQLQALLNRW 783 Query: 120 IG 121 Sbjct: 784 CR 785 >gi|326800911|ref|YP_004318730.1| Crp/Fnr family transcriptional regulator [Sphingobacterium sp. 21] gi|326551675|gb|ADZ80060.1| transcriptional regulator, Crp/Fnr family [Sphingobacterium sp. 21] Length = 347 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 63/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K V+I+EDN+ + +++E +GY G +ELA ++KPD+I+ DI + + G Sbjct: 1 MKNVLIIEDNDDIRESTVEILELAGYRVFSATEGRSGVELALKNKPDIILCDIMMPNLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + E IP I +TA A + D + + G + Y++KP + I+ + Sbjct: 61 YGVLFLLGKHQETASIPFIFLTAKAERADMRKAMEMGADDYLTKPFDDVELLNAIETRLR 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ GM+A+ AR+ PD +++D+ L + GLE Sbjct: 24 RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGLE 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ +PV+ +TA D G + Y++KP SL + ++ + Sbjct: 84 VLRRMRTDN--PNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRR 140 >gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 215 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+VED+ KL R + GY +G EAL+ + PD++I+D+ L + G + Sbjct: 1 MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKELPDLLILDVMLPGLDGFSVL 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E ++PVI +TA D R K G + Y+ KP + + I+ + Sbjct: 61 EEIREYIST-DLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRR 116 >gi|295838626|ref|ZP_06825559.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74] gi|295827102|gb|EFG65240.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L R+ +PD+I++D+ L I G E+ Sbjct: 11 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEVC 70 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 71 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124 >gi|291571978|dbj|BAI94250.1| adenylate cyclase [Arthrospira platensis NIES-39] Length = 344 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 64/115 (55%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 MIV+DNE+N L ++ GY L NG EAL++ R D++++DI + +++G ++ Sbjct: 1 MIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPLDLVLLDIMMPQMNGYQVL 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D +L+ IPVI ++A R + G E Y+SKP + + I + Sbjct: 61 ESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACL 115 >gi|282858981|ref|ZP_06268119.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] gi|282588261|gb|EFB93428.1| response regulator receiver domain protein [Prevotella bivia JCVIHMP010] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 58/119 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + ++ + +E GY + EAL + I+DI + E+SG + Sbjct: 5 RILVVDDEQDLCEIMQFNLENEGYQVAVAYSAEEALARTDLPTFHLFILDIMMGEMSGFK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K+D + +I VTA + D G + Y++KP S+ + +K + Sbjct: 65 LAQKLKQDPATNQAAIIFVTARDTENDIITGLTLGADDYMAKPFSVRELILRVKAVLRR 123 >gi|255530119|ref|YP_003090491.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343103|gb|ACU02429.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSG-YIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 +K++++VED+ L +D ++ G + + +G E L+ + + D+ I+D+ + + Sbjct: 1 MKRILLVEDDPNLGLLLQDYLQLKGKFDVVLCADGEEGLKAFSKQEFDLCILDVMMPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I++ + QE+P+I TA AM D+ G + YI+KP + + I + Sbjct: 61 GFTLGKEIRKIN--QEVPIIFATAKAMMEDKASAYDLGGDDYITKPFRIEELLLRINALL 118 Query: 121 GE 122 Sbjct: 119 KR 120 >gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1129 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ ED N K+ +++ G+ + NG EA++ R DV++MD+Q+ + GL+ Sbjct: 856 RVLVAEDTPANQKVINAILKKRGHQCVIADNGREAVDCLRNESFDVVLMDVQMPTMDGLQ 915 Query: 64 ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T I+E+ P+IA+TA+AM+GD ++ G ++YISKPI + +++ Sbjct: 916 ATAMIRENEYGSGVHTPIIAMTAYAMRGDRDKCIAAGMDSYISKPIDAKKLILILERL 973 Score = 87.5 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQEI 59 V++V+DN+ N + +++ + EAL+ ++ ++I+D + E Sbjct: 715 VLVVDDNQTNRVILEEMLTNWSMSPTPVDSAREALDQLSALSEKEKSYPLVIVDALMPET 774 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + +Q +E+ L ++ +++ + ER + A++ KP+S S ++ I Sbjct: 775 DGFMLLEQAREEGLLDSATILMLSSADHQIFSERCQGLDISAFLEKPVSQSDLLDAIMTA 834 Query: 120 I 120 + Sbjct: 835 L 835 >gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I+ED + K + +E + Y NG++ L LA D+I++DI L I+G E Sbjct: 2 KILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLPGINGKE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + KQI+ P I +TA D+ G + YI KP S S + I+ + Sbjct: 62 VLKQIRNTGI--HTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRR 118 >gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 1683 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++VEDNELN +L +L++ S NG A+E D I+MD+Q+ + G Sbjct: 1341 AKILLVEDNELNQELALELLKQSNIDVELAENGAIAVEKFSSRHFDGILMDLQMPVMDGF 1400 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK I+E IP+IA+TA AM D+E++ G +I+KPI+++ TI K++ Sbjct: 1401 TATKIIRESD--SSIPIIAMTANAMVSDKEKVLASGMNDHITKPINVNTMFATIAKWVSP 1458 Query: 123 A 123 + Sbjct: 1459 S 1459 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEIS 60 K+++IV+DN L + + ++++ + +G EA+EL +Q D I++D + ++ Sbjct: 1195 KRILIVDDNLLALDVLSSILKSFHCHVVAANSGEEAIELVKQATLTFDFIMLDWNMPDLD 1254 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+E IK + Q+ I VT+ A + K + + KP++ S + + + Sbjct: 1255 GIETYHIIKSQNNYQDNQFILVTSNANDNEAVDQLKKRINSVLVKPVTSSSIFDEMMRL 1313 >gi|94309460|ref|YP_582670.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353312|gb|ABF07401.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Cupriavidus metallidurans CH34] Length = 244 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ L R+ + + G+ +G + +P +I++D+ + ++ GL Sbjct: 9 ILVVDDDPELRDLLREYLTSQGFAVSVLHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ ++ +IPVI +TA + + D + G + Y+ KP S + I + Sbjct: 69 LRNLRAKND--DIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRR 124 >gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 3_1_23] Length = 1476 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 >gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 1103 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N + + + GY +G EAL R D+++ D + + G E+ Sbjct: 833 ILVVDDQPTNRDVIQRQLNHLGYQCEMAVHGQEALHKWRNGSFDLVLTDCHMPVMDGYEL 892 Query: 65 TKQIKEDSE----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TKQI+E L P++A+TA AM E+ G + Y++KP+ L ++I+K++ Sbjct: 893 TKQIRESERKDKTLGHTPIVAITANAMVEASEQCIASGMDDYLTKPVELKTLDQSIEKWM 952 >gi|228945524|ref|ZP_04107874.1| Two-component response regulator vanR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814042|gb|EEM60313.1| Two-component response regulator vanR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 190 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P+I ++A + D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676] gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 61 GLQVLQRLRADNNA--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|218887412|ref|YP_002436733.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758366|gb|ACL09265.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1162 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED+ +N R ++E SG +G +AL+ D ++MD+Q+ + GL Sbjct: 1035 HVLLVEDDAVNQLAVRRMLEKSGMTVTLVTDGQQALDALHHAAFDCVVMDVQMPVMDGLT 1094 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ D IPV+A+TA AM GD E + G + Y+SKP+ +S + I + + Sbjct: 1095 ATRAIRTDPAFASRAAIPVVAMTAHAMVGDRESFMEAGMDDYVSKPVEMSGLRQAILRAM 1154 >gi|332829768|gb|EGK02414.1| hypothetical protein HMPREF9455_01684 [Dysgonomonas gadei ATCC BAA-286] Length = 1268 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 KK +++VEDN ++ ++ Y +G A L + PD+II DI + + Sbjct: 1019 SKKMQILVVEDNNELQDFLKNSLQEL-YNISVANDGEVAWNLINRKMPDLIISDIMMPNM 1077 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + + IK + IPVI +TA + K + G + YI+KP +++ + I+ Sbjct: 1078 DGFGLCQLIKSTFQTSHIPVILLTALSDKTKQLEGLGLGADDYITKPFDITVLTKRIESI 1137 Query: 120 I 120 + Sbjct: 1138 L 1138 >gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1143 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 71/119 (59%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N + ++ +G+ + NG EAL+ + D+++MD+Q+ E+ GLE Sbjct: 887 ILLAEDNRINQEFLVHMLGAAGHRSRVAANGREALQALAEETFDLVLMDVQMPEMDGLET 946 Query: 65 TKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+E IP+IAVTA+AMKGD+ER G + Y+SKP+ + + + + Sbjct: 947 TRRIREHDGRLFDPAIPIIAVTAYAMKGDQERFLAAGMDGYVSKPVDFGLLSRVMARVL 1005 >gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D++ ++ + GY L+ +G EAL++ ++++D+ + + G Sbjct: 1 MYNILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESEDVHLLVLDVMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E++ IP+I ++A + D+ G + Y++KP + + +K + Sbjct: 61 IRATLKIRENN---SIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|298387513|ref|ZP_06997065.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298259720|gb|EFI02592.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 929 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DNE L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 684 VLIIDDNEDIRSYVHTLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 742 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 743 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 798 >gi|317051729|ref|YP_004112845.1| EAL domain-containing protein [Desulfurispirillum indicum S5] gi|316946813|gb|ADU66289.1| EAL domain protein [Desulfurispirillum indicum S5] Length = 542 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++IV+D E N + + Y L NG E + A H PD+II D + ++ G Sbjct: 5 SYRILIVDDIEDNRLAIKAALRKQEYTFLDAHNGQEGFDQAVAHMPDLIITDAMMPQVDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+T+Q++E + + IPV+ ++A K D+ R + G + +ISKP + + +I Sbjct: 65 FEMTRQLREQEKTRRIPVLMISALDEKRDKLRALETGVDDFISKPFDKTELRVRCRAFI 123 >gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 60/108 (55%), Gaps = 3/108 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ ++ +++ G+ + +G+EA++ A +H PD+I++D+ L ++G++ Sbjct: 7 KILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMNGID 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + K I+E +P++ +TA D + G + Y+ KP Sbjct: 67 VCKAIRE---TSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKE 111 >gi|256838638|ref|ZP_05544148.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] gi|256739557|gb|EEU52881.1| two-component system sensor histidine kinase/response regulator [Parabacteroides sp. D13] Length = 1364 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + + Y L +G +A +L + PD++I D+ + G+ Sbjct: 1117 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1175 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D IPVI +TA + K + + G + YISKP ++ + + ++ I Sbjct: 1176 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1232 >gi|237653314|ref|YP_002889628.1| response regulator receiver protein [Thauera sp. MZ1T] gi|237624561|gb|ACR01251.1| response regulator receiver protein [Thauera sp. MZ1T] Length = 122 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 65/120 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KKV+I +D + + L++ GY +G EA+ R +PD++++D+ + + S Sbjct: 1 MDKKVLIADDEQNIVISLEFLMKREGYQVEVANDGEEAVRRIRASRPDLVLLDVMMPKKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ D E+ I ++ +TA + + G +AY++KP S ++ ++ + Sbjct: 61 GFEVCQEIRSDPEMAGIRILMLTAKGRDTEVAKGLALGADAYMTKPFSTRELVDKVRSLL 120 >gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 774 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ + ++ Y+ +G + ++I+DI L +++G+ Sbjct: 2 KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++PV+ +TA D+ G + Y+ KPI + ++ + A Sbjct: 62 LCRKLRSHN--YQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 54/120 (45%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ + D+ ++L L+ G + ++ PD++I+D+++ +G++ Sbjct: 487 TIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+ + + +P++ +T + + G + +ISKP+ + + + + Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606 Score = 51.3 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 12/125 (9%) Query: 2 LKK--------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMD 53 +KK ++IV+ + + + + G A A + +++P +I+++ Sbjct: 353 MKKHPKTTVQSLLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLE 412 Query: 54 IQLQ--EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + E GL + + I EIPV+ + + D + + G A++ KP+S Sbjct: 413 LNFPKPEEDGLMLLEDI--AYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQ 470 Query: 112 FMETI 116 +E + Sbjct: 471 IVEIV 475 >gi|158424377|ref|YP_001525669.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571] gi|158331266|dbj|BAF88751.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D++ KL + + G+ +G E E + D++++D+ L + SGL+ Sbjct: 6 HVLVVDDDQEIRKLLARYLLSQGFRTTVAASGREMEECLASSRFDMVVLDLMLPDASGLD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ S L P+I +TA D + G + Y+ KP + + I+ + A Sbjct: 66 LCRALRARSRL---PIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRA 122 >gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K++IV+D++ ++L +E GY + NG EAL PD ++I+D+ + ++ G Sbjct: 2 KILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++++S+ IPV+ ++A D+ + G + Y++KP + M +K + Sbjct: 61 MEVIREVRKESQ---IPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|71906611|ref|YP_284198.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] gi|71846232|gb|AAZ45728.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Dechloromonas aromatica RCB] Length = 994 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLE 63 +++V+D +N++ +++ +G A G AL AR + +PD+I++DI + ++ G Sbjct: 24 ILVVDDTPINLETLAEMVRHAGANARVANCGATALRYARLEPRPDLILLDIMMPDMDGHA 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI--G 121 + +++ E ++IPVI VTA + +EER + G Y+SKP+ +S+ + I+ ++ Sbjct: 84 VLAELRRMPETRDIPVIFVTALDDQSEEERGIREGAADYVSKPVKMSVLIARIRAHLEVR 143 Query: 122 EA 123 A Sbjct: 144 RA 145 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D + L+ GY L + EA +L + V+I D ++ ++SG Sbjct: 860 QTLLLVDDEPNVLSSLTRLLRREGYAILTATSPTEAFDLLAKQPVQVVISDQRMPDMSGT 919 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA-YISKPISLSIFMETIKKYIG 121 E ++++ + +T + G +++KP E I++ Sbjct: 920 EFLSRVRQL--YPATIRLVLTGYTDLQSVTDAINRGAIYKFLTKPWDDDQLREQIREAFR 977 >gi|89097898|ref|ZP_01170785.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89087400|gb|EAR66514.1| sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 933 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 70/122 (57%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISG 61 K V+I +D+ N+ ++ G +NG E LE+ ++ D+I+MDI + + G Sbjct: 810 KSVLICDDDNRNIYALEKALKAEGMEVTTVQNGQECLEMVGQKRDIDIILMDIMMPVMDG 869 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++++ L+++P+IA+TA AMKGD+++ G YISKP+ L + ++ ++ Sbjct: 870 YETMQRLRSMDGLEQMPIIALTAKAMKGDKQKCLDAGASDYISKPLKLDQLLSVMRVWLT 929 Query: 122 EA 123 +A Sbjct: 930 KA 931 >gi|121998936|ref|YP_001003723.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121590341|gb|ABM62921.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 577 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 58/116 (50%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D +N L ++ G+ + NG EA+ R+ D+I+MDI + + G + T Sbjct: 13 LVVDDEPVNTMLLEAILGARGFHVITATNGEEAVARFREQPVDMILMDIMMPRMDGYQAT 72 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QIK IPV+ VTA + + + G + +++KPIS I ++ Sbjct: 73 RQIKAMDTEGFIPVLFVTALTDEQRLAQCVEAGGDDFVTKPISRVQLNAKIDSWLR 128 >gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED E L D ++ SG+ + +G + ++H PD+I++D+ L Sbjct: 1 MSGTILIVEDEEKLAALLADYLKQSGFDSEWLADGQAVVPWVKRHGPDLILLDLMLPGRR 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I K+I+ ++P+I +TA + D + G + YI KP S + +K + Sbjct: 61 GLDICKEIRS---FSDVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|109898565|ref|YP_661820.1| response regulator receiver modulated metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] gi|109700846|gb|ABG40766.1| response regulator receiver modulated metal dependent phosphohydrolase [Pseudoalteromonas atlantica T6c] Length = 331 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+IV+D N+++ + ++ Y ++G EAL L + PD+I++D+ + ++G Sbjct: 9 QKVLIVDDEPANLRVLKRILGDL-YRLSFAKSGEEALRLVERDLPDLILLDVMMPGMTGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K+ + + IPV+ VTA + DE + G YI+KP+S ++ ++ ++ Sbjct: 68 EVCKSLKDSRQTRAIPVMFVTALNDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 125 >gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1476 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335 >gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio sp. Ex25] gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio sp. Ex25] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + +G L K D+I++D+ + +++G Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAVND-KIDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|237722419|ref|ZP_04552900.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|260171106|ref|ZP_05757518.1| two-component system sensor histidine kinase/response regulator, hybrid [Bacteroides sp. D2] gi|229448229|gb|EEO54020.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1360 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDN+ ++ +E Y ++ +G E A + P++II DI + ++ G+ Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++IK + + IPVI +TA + + G ++Y+SKP + + M I+K I + Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226 >gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603] gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603] Length = 242 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + KL ++ GY LQ R+G E LE+ R+ +I++DI + +I G+ Sbjct: 14 TILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIH 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 74 MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129 >gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 220 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 52/121 (42%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ V+D+E L ++ G+ E L + + D++++D+ + G Sbjct: 1 MARILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLA-LKLDRYDLVLLDVMMPGTDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I+ + P++ +TA + + D G + Y+ KP + + ++ Sbjct: 60 FELCRAIRGSV---DAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ + E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|306521077|ref|ZP_07407424.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++ +DN ++ L+ GY + NG EA+ L D+II+D+ + +G Sbjct: 7 KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDS-TIDLIILDVVMPVKTGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E + P++ +TA D+ G + Y+SKP S S + +K + Sbjct: 66 VACNEIREKTTA---PILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRR 122 >gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++ +D+ +L + + Y + NGMEALE + + D++ +D+ + + G Sbjct: 21 RRILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVMMPFVDGF 80 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ S ++P++ +TA D + + G + YI+KP ++ F+ ++ + Sbjct: 81 DACERIRAKS---DVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRR 137 >gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01] gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B] gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01] gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L ++++ G+ + +G L K D+I++D+ + +++G Sbjct: 1 MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAIND-KIDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 60 METLKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|62317533|ref|YP_223386.1| response regulator PleD [Brucella abortus bv. 1 str. 9-941] gi|83269514|ref|YP_418805.1| response regulator PleD [Brucella melitensis biovar Abortus 2308] gi|148558083|ref|YP_001257597.1| response regulator PleD [Brucella ovis ATCC 25840] gi|189022788|ref|YP_001932529.1| response regulator PleD [Brucella abortus S19] gi|237817081|ref|ZP_04596073.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|254691030|ref|ZP_05154284.1| response regulator PleD [Brucella abortus bv. 6 str. 870] gi|254695663|ref|ZP_05157491.1| response regulator PleD [Brucella abortus bv. 3 str. Tulya] gi|254698814|ref|ZP_05160642.1| response regulator PleD [Brucella abortus bv. 2 str. 86/8/59] gi|254732261|ref|ZP_05190839.1| response regulator PleD [Brucella abortus bv. 4 str. 292] gi|256111466|ref|ZP_05452486.1| response regulator PleD [Brucella melitensis bv. 3 str. Ether] gi|256256215|ref|ZP_05461751.1| response regulator PleD [Brucella abortus bv. 9 str. C68] gi|260544769|ref|ZP_05820590.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038] gi|260756626|ref|ZP_05868974.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 6 str. 870] gi|260760056|ref|ZP_05872404.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 4 str. 292] gi|260763295|ref|ZP_05875627.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 2 str. 86/8/59] gi|260882443|ref|ZP_05894057.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 9 str. C68] gi|261216063|ref|ZP_05930344.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|265992970|ref|ZP_06105527.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] gi|297249572|ref|ZP_06933273.1| two-component system protein [Brucella abortus bv. 5 str. B3196] gi|62197726|gb|AAX76025.1| response regulator/GGDEF domain protein [Brucella abortus bv. 1 str. 9-941] gi|82939788|emb|CAJ12796.1| GGDEF:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148369368|gb|ABQ62240.1| response regulator/GGDEF domain protein [Brucella ovis ATCC 25840] gi|189021362|gb|ACD74083.1| GGDEF:Response regulator receiver [Brucella abortus S19] gi|237787894|gb|EEP62110.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella abortus str. 2308 A] gi|260098040|gb|EEW81914.1| GGDEF:Response regulator receiver [Brucella abortus NCTC 8038] gi|260670374|gb|EEX57314.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 4 str. 292] gi|260673716|gb|EEX60537.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 2 str. 86/8/59] gi|260676734|gb|EEX63555.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 6 str. 870] gi|260871971|gb|EEX79040.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 9 str. C68] gi|260917670|gb|EEX84531.1| response regulator receiver modulated diguanylate cyclase [Brucella abortus bv. 3 str. Tulya] gi|262763840|gb|EEZ09872.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 3 str. Ether] gi|297173441|gb|EFH32805.1| two-component system protein [Brucella abortus bv. 5 str. B3196] Length = 456 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 80.2 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+++EL R ++ Y + AL A + D II+ L Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ Q++ + IP+I + ++E + G Y+ +P+ ++ I Sbjct: 219 KLCTQLRTIQRTRLIPIILM-----VWEDEGALELGVNDYLMRPLEKIELFARLRTQIKR 273 >gi|28199251|ref|NP_779565.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71276152|ref|ZP_00652432.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71898347|ref|ZP_00680520.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71900367|ref|ZP_00682501.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170730620|ref|YP_001776053.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182681977|ref|YP_001830137.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|28057357|gb|AAO29214.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71163070|gb|EAO12792.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71729870|gb|EAO31967.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71731870|gb|EAO33928.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167965413|gb|ACA12423.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632087|gb|ACB92863.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578243|gb|ADN62212.1| two-component system, regulatory protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVEDN ++ + +E G+ +G++ LA ++ DV+++D+ L + G+E+ Sbjct: 11 VLIVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAVENSYDVVVLDLMLPRLDGIEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+++D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 71 CRQLRKDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 127 >gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+ +L RD +E SG+ + +G E +A ++++D+ L G Sbjct: 1 MTKILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I + ++++ +IP++ V+A D+ R G + YI KP S S +K +I Sbjct: 61 FAICRAVRKEL---DIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHIT 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|167839158|ref|ZP_02465935.1| response regulator protein [Burkholderia thailandensis MSMB43] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+++ED++ +L R+ +++ + R G A+ R+H+P ++I+D+ L + G+E Sbjct: 9 RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ +PV+ +TA + D+ + G + Y++KPI + + ++ + A Sbjct: 69 VCRRIR---GFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARVRALLRRA 125 >gi|89890994|ref|ZP_01202502.1| putative two-component response regulator [Flavobacteria bacterium BBFL7] gi|89516638|gb|EAS19297.1| putative two-component response regulator [Flavobacteria bacterium BBFL7] Length = 351 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV+I+ED+ + +L+E S Y + NG +ELA+++KPDV++ DI + E+ G Sbjct: 3 MKKVLIIEDDTALRENTAELLELSDYEVITAPNGRAGIELAKKNKPDVVVCDIMMPEVDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + D+ +IP I ++A + + G + Y++KP ++ I+ + Sbjct: 63 YGVLEALSLDTSTNQIPFIFLSARTDHKEVRKGMDLGADDYLTKPFEEEELLKAIETRLA 122 Query: 122 EA 123 +A Sbjct: 123 KA 124 >gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ + + G++ +G A++ A +PD++I+DI L GL Sbjct: 19 RRVLVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 79 EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135 >gi|113969060|ref|YP_732853.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-4] gi|114048795|ref|YP_739345.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-7] gi|113883744|gb|ABI37796.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-4] gi|113890237|gb|ABI44288.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. MR-7] Length = 338 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ Y +G AL L + PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVAKTLPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K++ IPVI VTA + DE + + G YI+KP+S + ++ ++ Sbjct: 63 EVCKLLKQEPLTCHIPVIFVTALSEVADETQGFELGAVDYITKPVSAPVVKARVRTHL 120 >gi|260466893|ref|ZP_05813076.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259029289|gb|EEW30582.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M++ +++V+D+ L ++ G+ + E + + D+I++D+ L Sbjct: 1 MMQSQPHILVVDDDREIRTLLGRYLDGQGFRVSVAADRRECEQKLGLGQFDLIVLDVMLP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + SGL+I + ++ IPVI +TA D + G + Y+ KP + I+ Sbjct: 61 DGSGLDICRALR--DRKPHIPVILLTALKEDVDRIIGLELGADDYLGKPFNPRELTARIR 118 Query: 118 KYIGEA 123 + + Sbjct: 119 AVLRRS 124 >gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 742 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 76/118 (64%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++ ++VED+ +N ++ G + NG+EA+E+ ++ D++ MD+Q+ + G+ Sbjct: 625 RRFLLVEDDSVNRMAMERILGKFGCEVISAGNGLEAVEILKRENVDLVFMDVQMPVMDGM 684 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+ I+E+ L ++P++A+TA+AM GD ER +GG ++Y+SKP+ ++ ET+ + Sbjct: 685 EATRIIREELGL-DVPIVAMTAYAMAGDRERFLQGGMDSYVSKPVDMARLKETVNSIL 741 >gi|218129748|ref|ZP_03458552.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697] gi|217987858|gb|EEC54183.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697] Length = 1362 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + + + Y NG EA +L + PD+ I D+ + E+ GL Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLAISDVMMPEMDGLT 1169 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+++ + +PVI +TA + D + G +AY+ KP + + +TI I Sbjct: 1170 LCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKTIANLI 1226 >gi|189465171|ref|ZP_03013956.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM 17393] gi|189437445|gb|EDV06430.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM 17393] Length = 1391 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ R L+ Y + +G EALE+ ++H D+I+ D+ + + G+E Sbjct: 1141 TILIVEDNKDMRSYIRTLLVGD-YRLFEAGDGQEALEIVQKHTIDLIVSDLMMPVMDGME 1199 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++IKE+ IP + +TA E+R + G + Y+ KP + I+ + Sbjct: 1200 LSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNIL 1256 >gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC BAA-613] gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC BAA-613] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED+EL +L RD +E G+ +G E L A D +I+D+ L SG Sbjct: 1 MNKVLIVEDDELIAELERDYLEAGGFEVELIFDGNEGLNRAMAGGWDALILDVMLPGKSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++++ +PVI VTA D+ R G + Y+ KP S + + +K +I Sbjct: 61 FEVCREVRKSL---HLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHI 116 >gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 226 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + ++ GY ++ NG LE+A + + D++++DI L EI+G Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++++ +IP+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena CCY9414] Length = 314 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D + R +E GY ++ +NG EAL L Q PD+I++D + ++ G E Sbjct: 14 ILIVDDEQFIRMQLRLALEREGYEIVEAQNGTEALNLCEQLHPDIILLDAIMPDMDGFEC 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++K + Q PV+ +T + +R + G +I+KPI + + +K+ I ++ Sbjct: 74 CTRLKSVAFSQCTPVLMITGLDDQESVDRAFEVGAIDFITKPIHWPVLRQRVKRLISQS 132 >gi|116331277|ref|YP_800995.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124966|gb|ABJ76237.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1023 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 69/113 (61%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN +N K+ L+ GY A NG+EA+E ++ K D+I MDIQ+ E+ G E Sbjct: 905 KILLVEDNLINQKIALRLLMKLGYTADAALNGLEAIECLKERKYDLIFMDIQMPEMDGYE 964 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T I++D + ++A+T M+GD+E+ + G +AYI+KPI + I Sbjct: 965 ATHLIRKDFAKSKPVIVAMTDNVMEGDKEKCLEAGMDAYIAKPIQIQDIESAI 1017 Score = 43.6 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 + + E +G+ + EA+ + K + + D+ L +++ E+ ++K S Sbjct: 769 REQIKKFCERNGFSVKVVKTAKEAIRTIGEEEKIGIFLTDLNLPDMNLPEMLNELKNQSP 828 Query: 74 LQEIPVIA 81 ++ +I Sbjct: 829 SLKLTIIL 836 >gi|116328548|ref|YP_798268.1| sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121292|gb|ABJ79335.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 1023 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 69/113 (61%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN +N K+ L+ GY A NG+EA+E ++ K D+I MDIQ+ E+ G E Sbjct: 905 KILLVEDNLINQKIALRLLMKLGYTADAALNGLEAIECLKERKYDLIFMDIQMPEMDGYE 964 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T I++D + ++A+T M+GD+E+ + G +AYI+KPI + I Sbjct: 965 ATHLIRKDFAKSKPVIVAMTDNVMEGDKEKCLEAGMDAYIAKPIQIQDIESAI 1017 Score = 43.6 bits (103), Expect = 0.009, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 15 MKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 + + E +G+ + EA+ + K + + D+ L +++ E+ ++K S Sbjct: 769 REQIKKFCERNGFSVKVVKTAKEAIRTIGEEEKIGIFLTDLNLPDMNLPEMLNELKNQSP 828 Query: 74 LQEIPVIA 81 ++ +I Sbjct: 829 SLKLTIIL 836 >gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+IV+D ++ +E + Y L+ N A + +PD++++D + SG+ Sbjct: 4 KTVLIVDDEASIREMIAVALEMADYRVLEADNAQAAHAMVVDDQPDLLLLDWMMPGTSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++K D+ E+P+I +TA + + ++ + + G + YI+KP S + +K + Sbjct: 64 ELARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRR 123 >gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1035 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 69/118 (58%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN++N + ++E GY NG+E L+ ++ DVI+MD+Q+ E+ G+ Sbjct: 909 RILVAEDNKVNQMVALRILEKLGYRGDIAANGLEVLDAVQRQPYDVILMDMQMPEMDGIT 968 Query: 64 ITKQIKEDSELQEIP---VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+++ + + + P +IA+TA AM+ D + G + Y+SKPI L + +++ Sbjct: 969 ATREVTQLFQGLKKPRPRIIAMTANAMESDRQLCLDAGMDDYVSKPIRLEELVRALRQ 1026 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 7/119 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 ++V+IV+DN N ++ I+ L +G AL L +Q D+ I+D+Q+ E+ G Sbjct: 767 RRVLIVDDNATNRQILALQIKKWKMQPLVAESGPSALALLQQQGWVDLAILDLQMPEMDG 826 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDE-ERIRKGGCEAYISKPISLSIFMETIKKY 119 + + +QI+ E+P+I +T+ E E+ + ISKP+ S + Sbjct: 827 VTLARQIRA--AYGELPLILLTSLGNTLTESEKAL---FSSLISKPVKQSTLYNALNSL 880 >gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++I++D+ + L D G+ + NG E L + D++++D+ + +SG+ Sbjct: 6 RRLLIIDDDVDFVTLLVDYFTLEGFDTVPAHNGPEGLAHLAREPFDLVVLDVMMPGMSGV 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+++E S IPV+ +TA D + G + Y+ KP + I + Sbjct: 66 EVLKKMREKS---HIPVLMLTARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|315923585|ref|ZP_07919825.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313697460|gb|EFS34295.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1317 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + ++ Y L+ ++G+EALE+ D++I D+ + + G+E+ Sbjct: 1072 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1130 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K D IP++ +TA + K +AYI KP S+ + TI+ + Sbjct: 1131 CHRLKTDLTYSHIPIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIESLL 1186 >gi|306833226|ref|ZP_07466355.1| response regulator [Streptococcus bovis ATCC 700338] gi|304424593|gb|EFM27730.1| response regulator [Streptococcus bovis ATCC 700338] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K V++VEDN L ++ GY L NG A+ A H PD++++D+ L ++ Sbjct: 1 MNKTLVLLVEDNSSVRNLMTTTLKAHGYRYLTAPNGDAAILEASSHNPDIVLLDLGLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G+E+ K+I+ +P+I ++A + D+ G + Y++KP S+ + ++ Sbjct: 61 DGVEVIKKIRS---WSSMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLR 115 >gi|298483802|ref|ZP_07001975.1| one-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] gi|298270096|gb|EFI11684.1| one-component system sensor histidine kinase/response regulator [Bacteroides sp. D22] Length = 1358 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VEDN+ ++ +E Y ++ +G E A + P++II DI + ++ G+ Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++IK + + IPVI +TA + + G ++Y+SKP + + M I+K I + Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224 >gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 769 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N+ + + L+ G+ A +G AL + D+I MD Q+ + G Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALSRMESTRYDMIFMDCQMPVLDGYA 557 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ + +S + IP++A+TA AM GD ER G + Y+SKP++ +++++ Sbjct: 558 ATRHWRALETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617 Query: 121 GE 122 Sbjct: 618 PR 619 >gi|260175353|ref|ZP_05761765.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1321 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + ++ Y L+ ++G+EALE+ D++I D+ + + G+E+ Sbjct: 1076 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1134 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K D IP++ +TA + K +AYI KP S+ + TI+ + Sbjct: 1135 CHRLKTDLTYSHIPIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIESLL 1190 >gi|256157697|ref|ZP_05455615.1| response regulator PleD [Brucella ceti M490/95/1] gi|256253331|ref|ZP_05458867.1| response regulator PleD [Brucella ceti B1/94] gi|261220447|ref|ZP_05934728.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti B1/94] gi|265996202|ref|ZP_06108759.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M490/95/1] gi|260919031|gb|EEX85684.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti B1/94] gi|262550499|gb|EEZ06660.1| response regulator receiver modulated diguanylate cyclase [Brucella ceti M490/95/1] Length = 462 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 84.4 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 3 KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+ D R ++ Y + AL A + D II+ Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWENEGALVVRALELGVNDYLMRPLEKIELFARLRTQIK 278 Query: 122 E 122 Sbjct: 279 R 279 >gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] Length = 248 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D + L ++ Y+ + +A+ D+ I+DI L +++ Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + I++ P+I +TA + D+ G + Y++KP + +K + Sbjct: 78 GFSLCQLIRKKYTY---PIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134 Query: 121 GE 122 Sbjct: 135 RR 136 >gi|238755039|ref|ZP_04616387.1| Response regulator receiver modulated diguanylate cyclase [Yersinia ruckeri ATCC 29473] gi|238706743|gb|EEP99112.1| Response regulator receiver modulated diguanylate cyclase [Yersinia ruckeri ATCC 29473] Length = 315 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 69/121 (57%), Gaps = 2/121 (1%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K++IV+D+ +N+++ ++ Y +G +A+++ PD+I++DI++ + Sbjct: 1 MGKPKILIVDDHPINIQILYQAF-SADYHVCMATSGKQAIDVCINQHPDLILLDIEMPGM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G ++ ++K + Q+IP+I +TA + E R G +ISKPI+ + +K + Sbjct: 60 NGFDVCARLKSSPDTQDIPIIFITAHIDEETETRCFNEGAVDFISKPINRNTVRARVKTH 119 Query: 120 I 120 + Sbjct: 120 L 120 >gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1070 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 74/120 (61%), Gaps = 3/120 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +NM + R ++E G+ + RNG EAL+ + D+++MDIQ+ E+ G+E Sbjct: 951 ILLVEDDVVNMTMARRMLEKMGHSVICARNGQEALDTLQAPGVDLVLMDIQMPEMDGIEA 1010 Query: 65 TKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ ++ D +P+IA+TA AM GDEE+ G +AY+SKP + E + ++ G Sbjct: 1011 TEIVRNDPLFTPYARVPIIALTAHAMGGDEEKFLSHGMDAYLSKPFDHARLQELLHRFFG 1070 >gi|225028056|ref|ZP_03717248.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353] gi|224954656|gb|EEG35865.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353] Length = 245 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED +L RD +E + + G L+ A + D+II+D+ L ++ G Sbjct: 1 MKHILIIEDERAVAELERDYLEINSFKVSIEETGEGGLQRALKGDIDLIILDLMLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI ++++ +IP++ V+A D+ R G + YI+KP S + + +K ++ Sbjct: 61 FEICRELRHRI---DIPILIVSAKKSDIDKIRGLGIGADDYITKPFSPNELVARVKAHLN 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|153870405|ref|ZP_01999814.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] gi|152073130|gb|EDN70187.1| Periplasmic Sensor Hybrid Histidine Kinase [Beggiatoa sp. PS] Length = 620 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+DN N +F L+ G+ ++ NG + +E A+ PD+IIMD+ + + GL Sbjct: 413 RKILVVDDNAANRMIFFGLLFPLGFEVIEAENGQQGIETAKALLPDLIIMDLVMPIMDGL 472 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+Q+++ L+ + +IA +A A + GC+ +++KPI +E +++++ Sbjct: 473 EATRQLRQIPALKNVIIIAASASAFDKQRKECLGVGCDDFVTKPIEADEVLEKLQEHL 530 >gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 248 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++ +D+ ++L + Y + NG+EAL++ R + ++++D+ + I G Sbjct: 19 RKILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGF 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++I+ S ++P+I +TA D + G + YI+KP + ++ I Sbjct: 79 TVTERIRARS---DVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRR 135 >gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755] gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + +L + G+ +G AL + DV ++D+ L +I Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I++ PV+ +TA D+ G + Y++KP + + +K + Sbjct: 61 GFQLLQTIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|323139254|ref|ZP_08074308.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242] gi|322395475|gb|EFX98022.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242] Length = 539 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 62/113 (54%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN N L + +E G+ + NG AL + +Q + D++++D+ + +ISG + Sbjct: 195 RILVVDDNASNRDLLKRRLERQGHAVVLAENGSSALAIVKQAQFDLVLLDLLMPDISGFD 254 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +K D L++IPVI ++A R + G E Y++KP + I Sbjct: 255 VLSILKSDLSLRDIPVIMISALNEIDTIVRCIEAGAEDYLAKPFEPVLLRARI 307 >gi|310823306|ref|YP_003955664.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309396378|gb|ADO73837.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 397 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 61/119 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++V+I +D+ + K+ L+ S Y +G E L + +PD++++D+ + + G Sbjct: 19 TRQVLIADDDAASRKIAAALLAASDYRIRFATSGEETLAAVGEERPDLVLLDVMMPGLDG 78 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++++E + IP+I VT+ + D + K G + ++ KP+ + + + Sbjct: 79 FEVCRRLRERLSGEYIPIILVTSLDGRSDVVQGLKAGADDFLHKPVHGAELRARVSNLL 137 >gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + ++ +E G++ ++ + L+LA + D II+D+ L + G E Sbjct: 2 KLLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLALERNYDCIILDVILPGMGGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++E ++P+I +TA K G + Y+ KP L ++ I Sbjct: 62 FCRFLRE-EIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALIRR 119 >gi|225629101|ref|ZP_03787134.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|260167407|ref|ZP_05754218.1| response regulator PleD [Brucella sp. F5/99] gi|261756817|ref|ZP_06000526.1| GGDEF:Response regulator receiver [Brucella sp. F5/99] gi|225615597|gb|EEH12646.1| GGDEF domain protein [Brucella ceti str. Cudo] gi|261736801|gb|EEY24797.1| GGDEF:Response regulator receiver [Brucella sp. F5/99] Length = 462 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 82.1 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 3 KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+ D R ++ Y + AL A + D II+ Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ Q++ + IP+I + R + G Y+ P+ ++ I Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMCPLEKIELFARLRTQIK 278 Query: 122 E 122 Sbjct: 279 R 279 >gi|209528286|ref|ZP_03276747.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491272|gb|EDZ91666.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 203 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 58/117 (49%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M+V+D+ + L D +E GY NG +ALE + P++II DI + E+ G + Sbjct: 1 MLVDDDPNLVILISDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGYTLV 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K I+E+++ I VI ++A D + G + Y+ KP M ++ + + Sbjct: 61 KLIRENAQFGWISVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQ 117 >gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED E + ++ + + ++ G + L+ A + D+ ++D+ L I G Sbjct: 1 MSRILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ +I +I +TA D+ + G + YI KP + + IK + Sbjct: 61 FKVCDELRK--RYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|152999372|ref|YP_001365053.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS185] gi|151363990|gb|ABS06990.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS185] Length = 338 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ Y +G AL L + +PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILIGILGDD-YKVKVAIDGPRALALVAKSRPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K+D IP+I VTA + DE + G YI+KP+S + +K ++ Sbjct: 63 EVCKLLKQDPLTSHIPIIFVTALSESSDEAQGFALGAVDYITKPVSAPVVKARVKTHL 120 >gi|88800460|ref|ZP_01116024.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Reinekea sp. MED297] gi|88776790|gb|EAR08001.1| Response regulator containing a CheY-like receiver domain and a GGDEF domain [Reinekea sp. MED297] Length = 561 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +++I +DNE + + R ++ G+ L NG EA+ L +PD+I++D+ + Sbjct: 1 MSKPLRILIADDNETDRMILRTIVRKEGHEVLLAANGEEAVHLFETGRPDLILLDVLMPV 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+ ++I++D+ +P+I +T+ + G + ++SKP + I IK Sbjct: 61 MDGVRAAEEIRKDTRRAYVPIIFLTSLQDAESLAQCLDSGGDDFLSKPYNRVILKAKIKA 120 Query: 119 Y 119 + Sbjct: 121 F 121 >gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316] gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDN + K+ + GY + NG EAL + +II DI + + G Sbjct: 1 MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ S +P+I +TA + D + G + Y+ KP+ L IK + Sbjct: 61 YQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602] gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|307130253|ref|YP_003882269.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya dadantii 3937] gi|306527782|gb|ADM97712.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya dadantii 3937] Length = 245 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED + R + SG L +G +ALEL KPD++++D+Q+ ++ G ++ Sbjct: 18 VLIAEDEPEIADILRAYLTRSGLRTLHAADGHKALELHLSMKPDLVLLDVQMPQVDGWQV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ + PVI +TA D+ + G + Y+ KP + + + ++ + A Sbjct: 78 LAGIRHRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133 >gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1] gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|262405712|ref|ZP_06082262.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643395|ref|ZP_06721214.1| sensor histidine kinase/response regulator family protein [Bacteroides ovatus SD CC 2a] gi|294810622|ref|ZP_06769272.1| sensor histidine kinase/response regulator family protein [Bacteroides xylanisolvens SD CC 1b] gi|262356587|gb|EEZ05677.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641273|gb|EFF59472.1| sensor histidine kinase/response regulator family protein [Bacteroides ovatus SD CC 2a] gi|294442164|gb|EFG10981.1| sensor histidine kinase/response regulator family protein [Bacteroides xylanisolvens SD CC 1b] Length = 601 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L +D++ Y+ + ++G+EAL+ + PD+II DI + + GL + Sbjct: 355 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 412 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K D + IP+I ++A A D+ G +AYI KP + TI+ + Sbjct: 413 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 470 >gi|257453011|ref|ZP_05618310.1| two component transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|257467429|ref|ZP_05631740.1| two component transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|315918553|ref|ZP_07914793.1| transcriptional regulator yycF [Fusobacterium gonidiaformans ATCC 25563] gi|317059551|ref|ZP_07924036.1| transcription regulator [Fusobacterium sp. 3_1_5R] gi|313685227|gb|EFS22062.1| transcription regulator [Fusobacterium sp. 3_1_5R] gi|313692428|gb|EFS29263.1| transcriptional regulator yycF [Fusobacterium gonidiaformans ATCC 25563] Length = 227 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 68/122 (55%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D E ++L + +E GY + G LE + P++I++D+ L EI Sbjct: 1 MGEKILIIDDEEAILELLKFNLEIYGYKIFTSNTGKGILEKIIEIHPNIILLDLMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ I K+++E+S ++ +I ++A + + D+ + G + YI+KP S+ + I + Sbjct: 61 GMSICKKVRENSIWNDLRIIILSAKSQEIDKITCLEIGADDYITKPFSIRELIARIHAFS 120 Query: 121 GE 122 Sbjct: 121 RR 122 >gi|239907600|ref|YP_002954341.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239797466|dbj|BAH76455.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 374 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 2 LKK-----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 +K +++V+D E N+ + D + + +G AL LA++ PD+I++DI + Sbjct: 1 MKTLAECLILLVDDTETNLDILVDAL-GEDHEVAVATDGPTALALAKEQTPDLILLDIMM 59 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G E+ +++ D E PVI +TA D+ R G Y++KP + Sbjct: 60 PGMDGYEVCRRLMADPATAETPVIFLTALTDVADKTRGFAVGGVDYVTKPFEPAEIKARA 119 Query: 117 KKYI 120 + ++ Sbjct: 120 RTHL 123 >gi|160886485|ref|ZP_02067488.1| hypothetical protein BACOVA_04496 [Bacteroides ovatus ATCC 8483] gi|156108370|gb|EDO10115.1| hypothetical protein BACOVA_04496 [Bacteroides ovatus ATCC 8483] Length = 947 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 702 VLVIDDNADIRSYVRGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 760 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 761 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLI 816 >gi|153873769|ref|ZP_02002241.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152069768|gb|EDN67762.1| Response Regulator Receiver Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 173 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EISGL 62 ++IV+D N+++ D + + L NG +ALE A + PD+I++D+ + I G Sbjct: 10 TLLIVDDTPENIRVLFDFLIAHDFRILVAENGEDALENAEEELPDLILLDVMMPAGIDGF 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + +K++++ Q+IPVI +TA + D+ + + G Y++KP + I ++ Sbjct: 70 ETCRLLKDNAQTQDIPVIFMTALSDTLDKVKAFELGAVDYVTKPFQQEEVLARINTHL 127 >gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNELN + +E G+ + +G E L++ + D+++MDIQ+ ++G+E Sbjct: 1100 RILLAEDNELNREFLTIFLEEGGHSVVTACDGYEVLDILHREHVDLVLMDIQMPRMNGME 1159 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+ E +PVIA+TA +M GD +R G ++ KP+ + I + Sbjct: 1160 ATRSIRSSGEAWSTVPVIALTAHSMAGDRDRFIAEGMSDFVGKPVDRNELHAAIAR 1215 >gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum] gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum] gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ G+ +G A+ + D+ ++D+ L +I Sbjct: 1 MSEKIVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ +QI++ PV+ +TA D+ G + Y++KP + + +K + Sbjct: 61 GFQLLQQIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|126175701|ref|YP_001051850.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS155] gi|217972049|ref|YP_002356800.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS223] gi|304411120|ref|ZP_07392736.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS183] gi|307301757|ref|ZP_07581515.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica BA175] gi|125998906|gb|ABN62981.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS155] gi|217497184|gb|ACK45377.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS223] gi|304350655|gb|EFM15057.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS183] gi|306913795|gb|EFN44216.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica BA175] Length = 338 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ Y +G AL L + +PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILIGILGDD-YKVKVAIDGPRALALVAKSRPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K+D IP+I VTA + DE + G YI+KP+S + +K ++ Sbjct: 63 EVCKLLKQDPLTSHIPIIFVTALSESSDEAQGFALGAVDYITKPVSAPVVKARVKTHL 120 >gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium JCVIHMP022] gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium JCVIHMP022] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED I G+ A +G A++ A Q +PD++IMDI L + GL Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I + + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 73 EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + G+ +G EAL+ R +P+++I+D+ L I G+E+ Sbjct: 4 ILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHIRSRRPEIVILDVMLPGIDGVEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +L PVI +TA D + G + Y+ KP+ + I+ + Sbjct: 64 CRRIRKMDQL---PVILLTARGDDLDVVVGLEAGADDYVVKPVEPRVLDARIRAVLRR 118 >gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC 19977] gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus] Length = 249 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+D ++ ++ + +G AL+LAR+ PDV+I+DI L + G+E Sbjct: 17 RALVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLPGVDGIE 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + V+ +TA + D G + Y++KP S + ++ + Sbjct: 77 VCRQLR---VFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRR 132 >gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii M21/2] gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii M21/2] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K++++V+D +++ + + +G+ L +G AL++ + +PD++I+D+ + + G Sbjct: 4 KRILVVDDETDLLEMVKSIFTRAGFTQILTASSGEAALKMCEEQEPDMMILDVMMPGMDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K++++ +IPV+ +TA D+ + G + Y+ KP + ++ + Sbjct: 64 FAALKELRK---TSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILK 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|146302697|ref|YP_001197288.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157115|gb|ABQ07969.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 4/124 (3%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K K++ ED+E L +D +E + Y + NG LE + D+ I DI + ++ Sbjct: 1 MKNFKILYTEDDETLAFLTKDNLEQNNYEVIHCTNGKSGLETFKNEDFDICIFDIMMPKM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +++++ ++P+I ++A +K D + + G + Y+ KP S+ + I+ + Sbjct: 61 DGFELAEEVRKIDN--DVPIIFLSAKTLKEDRIKGLRLGADDYLVKPFSIEELILKIEVF 118 Query: 120 IGEA 123 + + Sbjct: 119 LKRS 122 >gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ +I++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + +P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D+ +L ++ GY + +G EAL + ++I+D+ + ++GL Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMNGL 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K +++DS IP++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 62 DVVKTVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 123 A 123 A Sbjct: 119 A 119 >gi|295135073|ref|YP_003585749.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294983088|gb|ADF53553.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + Y +NGME E ++ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGTVLKDYLAMNEYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E +E EIP+I +TA AMK D + K G + Y++KP + + IK + Sbjct: 66 TLAKEIREKNE--EIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123 >gi|254562811|ref|YP_003069906.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Methylobacterium extorquens DM4] gi|254270089|emb|CAX26076.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Methylobacterium extorquens DM4] Length = 270 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ L + + +G +G + + D++++D+ + GL Sbjct: 29 HVLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQMRAFLDADRVDLVVLDVMMPGDDGLV 88 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + PV+ +TA + + D + G + Y+ KP + + IK + Sbjct: 89 LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR 146 >gi|255690604|ref|ZP_05414279.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM 17565] gi|260623875|gb|EEX46746.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM 17565] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL +I++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAL-KLDICSYQLILLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + ++P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|118593336|ref|ZP_01550720.1| two-component response regulator [Stappia aggregata IAM 12614] gi|118434014|gb|EAV40671.1| two-component response regulator [Stappia aggregata IAM 12614] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L D++ G+ Q +G + + + KPD +++D+ L GL Sbjct: 7 TILIVDDDPEIRRLVGDVLRKEGFGIEQAMSGRDMDAVLERVKPDAVVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++ D +P++ ++A + D + G + YI KP + F+ ++ + + Sbjct: 67 ICRRLRADD---TLPILFLSARGDEVDRVVGLEIGADDYIVKPFAPREFVARVRALLRRS 123 >gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti] gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti] Length = 246 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ ++ E GY +G E E + DVI++D+ L GL Sbjct: 10 HILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPVDVILLDLMLPGEDGLT 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ S ++P+I +T + D + G + YI+KP L + ++ + Sbjct: 70 LARDIRARS---DVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRR 125 >gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 418 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN+ N L +E G+ +G EAL + PD+I++D+ + E+ G+E+ Sbjct: 36 ILIVDDNQNNCDLLNRRLERKGFRCAIALSGREALRQVEKQPPDLILLDVMMPEMDGMEV 95 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + E+PV+ VTA D G YI KP+ I + I+ ++ Sbjct: 96 LDILRRNFNSVELPVLMVTAKNAHEDIISAFAQGANDYIEKPVDFPIMLARIRHHL 151 >gi|330825319|ref|YP_004388622.1| two component heavy metal response transcriptional regulator [Alicycliphilus denitrificans K601] gi|329310691|gb|AEB85106.1| two component heavy metal response transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 221 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED + R + +G++A +NG + L LA Q + D++I+D+ L + G + Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ ++PV+ +TA D + + G + Y+ KP S + + ++ + Sbjct: 62 VLQSLRNRGL--QMPVLYLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118 >gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK+++V+D + + GYI +G EALE + +PDV+I+D+ + +++ Sbjct: 1 MNKKILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMPKLT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++ + + +I +T D+ + G + Y++KP + + K + Sbjct: 61 GYEVCRKL---ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALV 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED + + + GY + +G A++L + D++I+DI L + G Sbjct: 1 MKKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+ +PV+ ++A DE + G + YI+KP + I + IK I Sbjct: 61 WSVLREIKK---YSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALI 116 >gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D ++ + + +GY + G EAL+ A PD+I++D+ L ++ G + Sbjct: 5 RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGLPDMDGKD 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + P++ ++A + ++ G + Y++KP + ++ + A Sbjct: 65 VIRELR---GWSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHA 121 >gi|237716942|ref|ZP_04547423.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|229442925|gb|EEO48716.1| LOW QUALITY PROTEIN: two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] Length = 616 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED + L +D++ Y+ + ++G+EAL+ + PD+II DI + + GL + Sbjct: 370 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 427 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K D + IP+I ++A A D+ G +AYI KP + TI+ + Sbjct: 428 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSR 485 >gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + G+ NG++ L LA + D+I++D L I GL Sbjct: 2 KILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGLA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ ++ PV+ +TA D + + G + Y+ KP + S + + + + Sbjct: 62 VLAALRQ---TKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRS 118 >gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25] gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|330821703|ref|YP_004350565.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373698|gb|AEA65053.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1172 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63 +++ ED+ N+ +IE G RNG EALEL Q HK D+I+MD+ + E+ GL Sbjct: 1053 ILLAEDDARNIFALSHVIEPLGAKLFIARNGREALELLEQGHKIDLILMDVMMPEMDGLA 1112 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I++D+ +P+IA+TA AM+ D R + G + YISKPI + + + ++ + Sbjct: 1113 ATAAIRKDARFMRLPIIALTAKAMEHDRIRCIEAGADDYISKPIDIDKLVSLCRVWLRQ 1171 Score = 92.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ +ED+ + + RDL+ + + +G + L R +P +++D+ L + SGL + Sbjct: 785 ILAIEDDLVFAGILRDLVHELDFDFVHAADGSSGVALVRDMQPTAVLLDVGLPDRSGLTV 844 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K D + IP+ V A + G Y KP + + + I++ G Sbjct: 845 LEWLKSDPLTRHIPIHIV---AATDHIAKALHLGAAGYTLKPAARATLEDAIRRLEGR 899 Score = 72.9 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + RDL+ + ALE D ++ D+ L + +G Sbjct: 905 KRVLVIEDDTAMREGIRDLLTNETTEIVAVDTLASALENLDLVDFDCVVTDLALPDGTGY 964 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ + + D +PVI T A+ DEE + Sbjct: 965 DLLETLAADPARALLPVIVYTGRALSADEEHRLR 998 >gi|325921446|ref|ZP_08183302.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325548088|gb|EGD19086.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 1054 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++ ED+ N+ ++E G RNG EALE +H+ ++++MDI + E+ GL Sbjct: 934 ATVLLAEDDVRNIFALSSVLEPLGVTLQIARNGREALEHLARHEVNLVLMDIMMPEMDGL 993 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ + + Q++P+IA+TA AM D ER + G YI KPI + + + + Sbjct: 994 TAMRQIRANRQWQDLPIIALTAKAMADDRERCLEAGANDYIPKPIDVDKLVSLCRVWCSR 1053 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ + DL + + + EAL+LA +P I++DI L + SGL + Sbjct: 668 ILAVEDDTRFAQALVDLAHELDFDCVVAPSAEEALQLAADLRPSGILLDIGLPDASGLSV 727 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + IPV V+A + + G Y+ KP + + I++ Sbjct: 728 LERLKRDPATRHIPVHVVSAMERS---QIALELGAVGYLIKPATRELLAGAIRQL 779 Score = 69.8 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 58/137 (42%), Gaps = 16/137 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVED+ L+ + + EA++ D ++ D+ L + SG Sbjct: 788 RRLLIVEDDSALRANLELLLARDQLEIVAVGSIAEAMQQLAGSTFDCMVTDLALPDGSGY 847 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETI----- 116 ++ +++ + + PVI T A+ DEE+ + ++ I K + S ++ + Sbjct: 848 DLLERMAGNDAVAFPPVIVYTGRALTRDEEQRLRRYSKSIIIKGVRSPERLLDEVTLFLH 907 Query: 117 ----------KKYIGEA 123 ++ + EA Sbjct: 908 SVEASLPSDQQRLLREA 924 >gi|300112844|ref|YP_003759419.1| response regulator receiver protein [Nitrosococcus watsonii C-113] gi|299538781|gb|ADJ27098.1| response regulator receiver protein [Nitrosococcus watsonii C-113] Length = 132 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 60/116 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KVM+V+D++ K L++ G + +G EAL QH PD+I +DI + + G + Sbjct: 13 KVMVVDDSKTIRKTAETLLKKFGCKVVTAEDGFEALPKINQHHPDIIFIDIMMPRLDGYQ 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 IK +S L+ PVI +++ D R R GC+ Y++KP + + I + Sbjct: 73 TCTLIKNNSALKNTPVIMLSSKDGLFDRARGRIAGCDQYLTKPFTREELLGAISSH 128 >gi|269118927|ref|YP_003307104.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268612805|gb|ACZ07173.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +KK +++VED+ L + +E + + +N +ALE+ + +KP+++I+DI L + Sbjct: 1 MKKNTILVVEDDLEIKTLIQFFLEKENFNVITAQNSGKALEMLQNNKPELVILDIMLPGL 60 Query: 60 SGLEITKQIKEDSELQEIPVI-AVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +GLEI K IK++S P I +TA D + GC+ Y+ KP + IKK Sbjct: 61 NGLEIAKLIKKESHKYGTPFIFMLTAKTETEDVIDGFQAGCDDYLRKPFDPRELILRIKK 120 Query: 119 YI 120 + Sbjct: 121 LL 122 >gi|255009001|ref|ZP_05281127.1| putative two component system histidine kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] gi|313146741|ref|ZP_07808934.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] gi|313135508|gb|EFR52868.1| two-component system sensor histidine kinase [Bacteroides fragilis 3_1_12] Length = 375 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 64/113 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+ L + L+ + + NG +AL+ ++ PD+I++D+ + ++SG E Sbjct: 11 KILIVDDVMSNVLLLKVLLTNEKFNIVTACNGTQALDQVKKENPDLILLDVMMPDMSGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +++++K D E IP+I +TA D + + G +ISKP + + + Sbjct: 71 VSQKLKADPEAAHIPIIFLTALNSTADIVKGFQVGGNDFISKPFNKEELIIRV 123 >gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + +L + G+ +G AL + DV ++D+ L +I Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I++ PV+ +TA D+ G + Y++KP + + +K + Sbjct: 61 GFQLLQTIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016] gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 1072 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 KV++ EDNE+N ++ +L+E +G + NG EAL+ + D+I MD+Q+ Sbjct: 696 KVLLTEDNEINQQIAVELMEGNGLLVTVANNGQEALDHLEAMAKGESHFDIIFMDLQMPV 755 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E + +I+ +S IP+IA+TA AM + ER G +ISKPI I TI+K Sbjct: 756 MDGYEASHRIRANSSYDTIPLIAMTAHAMVEERERCLNLGMNDHISKPIDPEILFNTIRK 815 Query: 119 YIGE 122 + Sbjct: 816 WCPR 819 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 ++++V+DNE +++ ++++ T +G +A++ R+ K D+I MD + E Sbjct: 546 RILVVDDNEHALEIMQEMLSTLPGKVALANSGQQAVDCIRKASEQREKFDLIFMDWNMPE 605 Query: 59 ISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + G+E ++ I+E + P ++ VTA+ + + ++SKP+ S + + Sbjct: 606 MDGIETSRLIRESFASEYQPQIVIVTAYDKEDVLDATNDLDIAGFLSKPVGQSYLFDLLV 665 Query: 118 KYIGE 122 + G Sbjct: 666 ELFGR 670 >gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] Length = 236 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ +L + +G+ + EALE + PDV+++D+ L G E Sbjct: 8 RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLPGADGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I + ++ + ++PV+ +TA D R + G + Y++KP S+ ++ + A Sbjct: 68 ILQLLRARAV--DVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRRA 125 >gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 224 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+ L ++ +GY N A EL + + D+++ DI + ++ G Sbjct: 1 MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSEQFDLVLSDIMMPQVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ IP++ +TA +E+ G + Y+ KPI+ + + IK + Sbjct: 61 YQFAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|291518383|emb|CBK73604.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQE 58 + ++I +D + + R +E+ G NG EA+++ +I+MD+ + E Sbjct: 1 MNNILICDDEKDIISALRIYLESEGMNVTAASNGREAVDIMAGPNGKDMQLILMDVMMPE 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G+ +I++ +P+I +TA + D+ G + Y++KP + M +K Sbjct: 61 MDGIAAMAEIRK---TSNVPIIMLTAKSEDADKVIGLTVGADDYVTKPFNPVELMARVKS 117 Query: 119 YIGE 122 + Sbjct: 118 QLRR 121 >gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074] Length = 1798 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV+IV+D+ N+ ++E G L NG E +E+ QH V++MDI + E+ G Sbjct: 1676 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1735 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ + G Y++KP+ + ++ ++ Sbjct: 1736 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVMEGWMS 1795 Query: 122 E 122 + Sbjct: 1796 Q 1796 >gi|256395913|ref|YP_003117477.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362139|gb|ACU75636.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ KV++V+D ++ R + Y + +G AL +A + PD++++D+ L ++ Sbjct: 1 MMIKVLVVDDEPQLLRALRINLTARKYEVVTAIDGTSALAIAARTLPDLVVLDLGLPDLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K ++ E+P++ ++ A D+ G + Y++KP S+ + ++ Sbjct: 61 GAEVIKGLR---GWTEVPIVVLSGRADASDKVEALDAGADDYLTKPFSMEELLARLRVAR 117 Query: 121 GEA 123 A Sbjct: 118 RHA 120 >gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czccba [Cupriavidus taiwanensis LMG 19424] gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Cupriavidus taiwanensis LMG 19424] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + SG++ R+G + L AR+H D+I++D+ L + G E Sbjct: 2 RILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + ++ PV+ +TA D + + G + Y+ KP + + + I+ + Sbjct: 62 VLRELRRE---RDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRR 117 >gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 241 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++++ED+ L R ++++ Y NG + L+ + + PD++I+D+ L +I G Sbjct: 1 MKNILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI + I++ E P+ ++A + D + G + YI+KP S+ + + Sbjct: 61 MEICRSIRKSDE--STPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator, hybrid, putative [Microscilla marina ATCC 23134] Length = 1356 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ EDN + + + Y ++ NG E +E A + PD+II DI + + G E Sbjct: 1103 TVLVTEDNSELRQFIASELIGT-YRVIEATNGAEGIERAIKQLPDLIITDIMMPQTDGFE 1161 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + IP+I ++A A + + + G + Y++KP S + ++ IG Sbjct: 1162 LVNTLRNNPATSHIPIIILSAKASPESKLKGLEIGSDDYLTKPFSSKELLLKVRNIIGR 1220 >gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K++IV+D+ +L ++ GY + +G EA+ R + PD +II+DI + +++G Sbjct: 2 KILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTN-PDIGLIILDIMMPDMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K++++D+ +P++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 61 TEVLKEVRKDNP---VPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|329909927|ref|ZP_08275148.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] gi|327546366|gb|EGF31380.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae bacterium IMCC9480] Length = 204 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + D ++ +GY+ L +G ALE P +I++D + + G E Sbjct: 11 ILIVDDVPDNLAVLSDALDEAGYLVLVATDGAGALERLGYVTPHLILLDAVMPGMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+ IPVI +T R + G Y+ KP+ + I + A Sbjct: 71 CRRIRALPGASHIPVIFMTGLTETEHVVRGFEVGGNDYVIKPLQPREVIARIVAQLRSA 129 >gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VED + L R +++ + +G+ LELA D +++D+ L E+ G E Sbjct: 2 HILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ D+ + PV+ +TA D G + Y+ KP ++ + + + Sbjct: 62 ICRRMRTDNVMS--PVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRR 118 >gi|296268830|ref|YP_003651462.1| response regulator receiver protein [Thermobispora bispora DSM 43833] gi|296091617|gb|ADG87569.1| response regulator receiver protein [Thermobispora bispora DSM 43833] Length = 125 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+E+ +L + G+ +G + L+ PDVI +D+ + + G Sbjct: 1 MGRVLVVDDDEVIRQLIAVNLTLEGFEVATACDGQDCLDRVHDIDPDVITLDVMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E +++ D + I V+ +TA A + D R G +AY++KP + ++ +++ Sbjct: 61 WETATRLRSDPSTRHIKVVLITARAQEEDRRRGLGIGVDAYVTKPFDPAELIQIVREL 118 >gi|256391218|ref|YP_003112782.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357444|gb|ACU70941.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 236 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++++V+D + R + GY +G L +A + PD++++D+ L ++ G Sbjct: 1 MKRLLVVDDEAQLLVAVRINLSARGYEVSVAPDGTTGLAVAARRPPDLVVLDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++ +P++ ++ D+ G + +++KP + ++ + Sbjct: 61 VQVIDGLR---GWTTVPILVLSGRTESWDKVEALDAGADDFVTKPFDMDELAARVRSLLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED ++ +G+ L+ G EAL++ H DV ++D+ L I G Sbjct: 4 MSTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I+E++ +++ +I +TA GD + G + YI+KP S I+ + Sbjct: 64 FQVCKTIREEN--KKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine kinase [Opitutus terrae PB90-1] Length = 378 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 63/119 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D+ LN+++ +++T GY +G ALEL + +PD++++D+ + ++G Sbjct: 13 RKILVVDDDRLNIRILSGILKTQGYALADADSGERALELYPEFRPDLVLLDVVMPGLNGF 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E +++K+ P++ +TA D G Y+ KP + I+ ++ Sbjct: 73 ETCRKLKDTYGDACAPIVFITAKNESDDVVEGFSAGGVDYLPKPFQAKEVLVRIQTHLR 131 >gi|146342170|ref|YP_001207218.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194976|emb|CAL79001.1| putative sensor histidine kinase with multiple PAS and a response regulator receiver domain (modular protein) [Bradyrhizobium sp. ORS278] Length = 1319 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN L+ Y +G+ ALE R+ +PD+++ D+ + + G Sbjct: 666 RVVLADDNSDMRDYVCRLLGDD-YEVEAVADGVAALETVRRRRPDLVLTDVMMPRLDGFG 724 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK-----K 118 + K ++ D + ++IPV+ ++A A + + G Y+SKP S + ++ Sbjct: 725 LLKALRSDPQRRDIPVVILSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRVNIDLA 784 Query: 119 YIGEA 123 + A Sbjct: 785 RVRRA 789 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 13/121 (10%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 V++VEDN + L+E GY + R+G++AL L + D+++ D+ + + G+ Sbjct: 1194 VLVVEDNPEIGEFSTQLLEDLGYRTVLARSGLDALRLIEDNPDGFDLVLSDVVMPGMDGV 1253 Query: 63 EITKQIKEDSELQEIPVIAVTAFAM---KGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + ++I+ L IP++ + ++ GD I KP S+ +++ Sbjct: 1254 TLGQEIRR--RLPTIPIVLNSGYSDVLADGDR-HGFSL-----IHKPYSVDELSRVLRQV 1305 Query: 120 I 120 + Sbjct: 1306 M 1306 >gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNELN + +E G+ + +G E L++ + D+++MDIQ+ ++G+E Sbjct: 1100 RILLAEDNELNREFLTIFLEEGGHSVVTACDGYEVLDILHREHVDLVLMDIQMPRMNGME 1159 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+ E +PVIA+TA +M GD +R G ++ KP+ + I + Sbjct: 1160 ATRSIRSSGEAWSTVPVIALTAHSMAGDRDRFIAEGMSDFVGKPVDRNELHAAIAR 1215 >gi|91778882|ref|YP_554090.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691542|gb|ABE34740.1| multi-sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 1194 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++ ED+ N+ ++E G RNG EAL+ +I+MDI + E+ G Sbjct: 1073 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALDALENGPEVHLILMDIMMPEMDG 1132 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +I+ + +P+IA+TA AM D R + G + Y+SKPI + + + ++ Sbjct: 1133 LTAMGEIRRNPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1192 Query: 122 E 122 + Sbjct: 1193 Q 1193 Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ ++ RDL + + + L L R +P +++D+ L + SGL + Sbjct: 807 IVAVEDDVAFAEILRDLTHELDFDFVHASDAASGLALVRDMRPAAVLLDVGLPDRSGLTV 866 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +K D + IP+ V+A ++ G Y KP + S I++ Sbjct: 867 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 918 Score = 76.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 47/94 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + R L+++ + EAL+ + D ++ D+ L + +G Sbjct: 927 KRVLVIEDDTPMRESIRALLQSENTEIVAVATLAEALDYLAKVTFDCVVTDLALPDGTGY 986 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ ++ +PVI T + +EE + Sbjct: 987 DLLERLAANTAHVSLPVIVYTGRMLSDEEEHRLR 1020 >gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8] gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VED L + ++ + +G E + +A DV+I+DI L Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G EI K ++E PV+ +TA + + G + Y+ KP L + ++ I Sbjct: 61 GWEILKSMRESGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALI 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|83311738|ref|YP_422002.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946579|dbj|BAE51443.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 638 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN N K+ L+ G+ NG+EAL+ + D+I+MD+Q+ E+ G E Sbjct: 403 ILLAEDNIFNQKVAAGLLNREGHRVTVACNGLEALDKLQDENFDLILMDMQMPEMDGPEA 462 Query: 65 TKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + IP+IA+TA AM D R R G + +++KPI + I + + Sbjct: 463 TRRIRAMPGPVASIPIIALTANAMAVDVARCRAAGMDGHVAKPIDPLLLRSAIAEVL 519 >gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+ VED+++ + + +E G+ +G++ LE R PD+ ++D+ + + G+ Sbjct: 11 ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGV 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP +S+ + ++ + Sbjct: 71 SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127 >gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED +L + G+ +G E A H+ D+I++D+ L ++G +I Sbjct: 2 LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLPGMNGFQIL 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ P+I +TA + + + K G + YI+KP +S + + + Sbjct: 62 EKLRGSGIT--TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 116 >gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25] Length = 1055 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN +N K+ + +G+ NG EA+++ +Q++ +I+MD + + G E Sbjct: 773 KILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQQNQYCLILMDCMMPVMDGFE 832 Query: 64 ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK I++ +IP+IA+TA + D ++ G + Y+ KP + E + K Sbjct: 833 ATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAGLLKEKLDKA 892 Query: 120 IG 121 IG Sbjct: 893 IG 894 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 ++++VEDN +N K+ L+ +GY NG A+E+ ++ D+I+MD + + G Sbjct: 935 RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGF 994 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E ++QI+ L + P+IA+TA + D +R G +AY+ KP+ + I+ Sbjct: 995 EASRQIRAYEASKGLPKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRREKLLYQIENA 1054 Query: 120 I 120 I Sbjct: 1055 I 1055 >gi|256830761|ref|YP_003159489.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256579937|gb|ACU91073.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 377 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 65/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D LN++L +++ +GY L +G EA LA +H PD+I++D+ + + G Sbjct: 12 ILIVDDEPLNIRLLDIVLKKNGYRTLSCTSGPEARALAAEHSPDLILLDVLMPDEDGYAT 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K+ S+ +IP+I ++A + R + G +ISKP + + +K ++ Sbjct: 72 CALLKQQSQTSDIPIIFISALTDTSSKVRGLEVGGVDFISKPFEKAEVLARVKVHL 127 >gi|160873992|ref|YP_001553308.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS195] gi|160859514|gb|ABX48048.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS195] gi|315266221|gb|ADT93074.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella baltica OS678] Length = 338 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ Y +G AL L + +PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILIGILGDD-YKVKVAIDGPRALALVAKSRPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K+D IP+I VTA + DE + G YI+KP+S + +K ++ Sbjct: 63 EVCKLLKQDPLTSHIPIIFVTALSESSDEAQGFALGAVDYITKPVSAPVVKARVKTHL 120 >gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|17989005|ref|NP_541638.1| response regulator PleD [Brucella melitensis bv. 1 str. 16M] gi|23500354|ref|NP_699794.1| response regulator PleD [Brucella suis 1330] gi|161620672|ref|YP_001594558.1| response regulator PleD [Brucella canis ATCC 23365] gi|163844762|ref|YP_001622417.1| response regulator PleD [Brucella suis ATCC 23445] gi|225686396|ref|YP_002734368.1| response regulator PleD [Brucella melitensis ATCC 23457] gi|254699847|ref|ZP_05161675.1| response regulator PleD [Brucella suis bv. 5 str. 513] gi|254702985|ref|ZP_05164813.1| response regulator PleD [Brucella suis bv. 3 str. 686] gi|256015387|ref|YP_003105396.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915] gi|256043507|ref|ZP_05446434.1| response regulator PleD [Brucella melitensis bv. 1 str. Rev.1] gi|256262463|ref|ZP_05464995.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260564702|ref|ZP_05835187.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260568102|ref|ZP_05838571.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40] gi|261750320|ref|ZP_05994029.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261753594|ref|ZP_05997303.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|265989925|ref|ZP_06102482.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] gi|294853592|ref|ZP_06794264.1| two-component system response regulator [Brucella sp. NVSL 07-0026] gi|17984843|gb|AAL53902.1| response regulator protein [Brucella melitensis bv. 1 str. 16M] gi|23463971|gb|AAN33799.1| response regulator/GGDEF domain protein [Brucella suis 1330] gi|161337483|gb|ABX63787.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365] gi|163675485|gb|ABY39595.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445] gi|225642501|gb|ACO02414.1| GGDEF domain protein [Brucella melitensis ATCC 23457] gi|255998047|gb|ACU49734.1| response regulator/GGDEF domain protein [Brucella microti CCM 4915] gi|260152345|gb|EEW87438.1| GGDEF domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260154767|gb|EEW89848.1| GGDEF domain-containing protein [Brucella suis bv. 4 str. 40] gi|261740073|gb|EEY27999.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 5 str. 513] gi|261743347|gb|EEY31273.1| response regulator receiver modulated diguanylate cyclase [Brucella suis bv. 3 str. 686] gi|263000594|gb|EEZ13284.1| response regulator receiver modulated diguanylate cyclase [Brucella melitensis bv. 1 str. Rev.1] gi|263092199|gb|EEZ16496.1| GGDEF:Response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|294819247|gb|EFG36247.1| two-component system response regulator [Brucella sp. NVSL 07-0026] gi|326410768|gb|ADZ67832.1| response regulator PleD [Brucella melitensis M28] gi|326554060|gb|ADZ88699.1| response regulator PleD [Brucella melitensis M5-90] Length = 461 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.7 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+++EL R ++ Y + AL A + D II+ L Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278 >gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25] Length = 1059 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN +N K+ + +G+ NG EA+++ +Q++ +I+MD + + G E Sbjct: 777 KILVVDDNTVNQKIAGLHVTKAGFDFDIAVNGEEAVDMFQQNQYCLILMDCMMPVMDGFE 836 Query: 64 ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK I++ +IP+IA+TA + D ++ G + Y+ KP + E + K Sbjct: 837 ATKMIRQIEAKEKRTVKIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAGLLKEKLDKA 896 Query: 120 IG 121 IG Sbjct: 897 IG 898 Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 ++++VEDN +N K+ L+ +GY NG A+E+ ++ D+I+MD + + G Sbjct: 939 RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQVAVEMFQKDGGFDIILMDCMMPIMDGF 998 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E ++QI+ L + P+IA+TA + D +R G +AY+ KP+ + I+ Sbjct: 999 EASRQIRAYEASKGLPKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRREKLLYQIENA 1058 Query: 120 I 120 I Sbjct: 1059 I 1059 >gi|332527238|ref|ZP_08403306.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332111658|gb|EGJ11639.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 766 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDN +N ++ + ++E +G + +G+ A+++A +++MD+Q+ + GL Sbjct: 639 ARVLLAEDNPVNAEVAQAILEEAGLVVEVAEDGVAAVDMALARDYRLVLMDMQMPGLDGL 698 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 + + I+ +PVIA+TA A D+ R + G + ++SKP+ + + +++ G Sbjct: 699 DACRAIRRRHPAGTLPVIAMTANAFAEDKVRCQAAGMDDFLSKPVDPLALYQLLLRWLDG 758 Query: 122 EA 123 A Sbjct: 759 RA 760 >gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D L R+ + G+ + N +AL + + PD +I+D+ L + G + Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++E E PV+ +TA D+ G + Y++KP SL + ++ + A Sbjct: 76 LRRVREMGT--ECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRA 132 >gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2] gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 1046 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 +V+ V+D+ +N+++ +L+ +G + + EAL+L + + D++I D + E+SG+ Sbjct: 714 RVLAVDDDGVNLRVLEELLYATGCSVVAVDHAEEALQLLNGRARFDLVITDWMMPEMSGI 773 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++I+E L E+PV+ +TA + GD G ++ KP+ ++ + Sbjct: 774 ELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLRKPVDAEELKARVRTLL 831 >gi|293370623|ref|ZP_06617175.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292634357|gb|EFF52894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1339 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED+E + +++RNG EALE + PD++I DI + E+ G Sbjct: 1084 HVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDGFT 1142 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK++ L IPVI +T+ + D G +AYI KP ++ I +T++ I Sbjct: 1143 LCRKIKQNVNLNHIPVILLTSKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLI 1199 >gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25] gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2] gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+ +VED+ L + ++ GY + +G ALE +H D +I+D+ L + GL Sbjct: 5 KKIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++I++ S +PVI ++A + + G + Y++KP S+ M +K Sbjct: 65 EICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRR 122 >gi|224537465|ref|ZP_03678004.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM 14838] gi|224520903|gb|EEF90008.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM 14838] Length = 1390 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVEDN+ R L+ Y + +G EALE+ ++H D+I+ D+ + + G+E Sbjct: 1140 TILIVEDNKDMRSYIRTLLVGD-YRLFEAGDGQEALEIVQKHTVDLIVSDLMMPVMDGME 1198 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++IKE+ IP + +TA E+R + G + Y+ KP + I+ + Sbjct: 1199 LSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNIL 1255 >gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++D ++L + GY + NG + + + + K V+++D+ + I G ++ Sbjct: 4 VLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++D IP+I ++A + D+ + G + Y+ KP + + +K I Sbjct: 64 CMKIRKD---YNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRR 118 >gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK] gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK] Length = 850 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 71/122 (58%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KV++VED +N K+ + ++E G + NG +++ ++H D+I MD Q+ + G Sbjct: 716 AKVLVVEDTVVNQKVAKMMLEKLGVEVMIASNGQIGVDMYQEHDFDIIFMDCQMPVLDGF 775 Query: 63 EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E TK I+ + IP+IA+TA +K ++++ + G + ++SKP+S + ++K++ Sbjct: 776 EATKAIRNLEQNTSHIPIIALTANVVKEEKDKCYEAGMDDFVSKPVSKKVLSAVMEKHLA 835 Query: 122 EA 123 A Sbjct: 836 IA 837 Score = 80.2 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQEI 59 V++V+D+ LNM++ + G + + +A+++ +Q D++I+D + + Sbjct: 493 VLLVDDSMLNMRITSAQLNNFGAKTICCDDATQAIDIVKQAIVNKSPFDLVIIDKIMPHL 552 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ + + ++ L ++ ++A GD+ + ++ G A +S+P S T+K+ Sbjct: 553 DGFELAQLLTKELGLDCPRLMMISAGPQMGDDLKAKQVGILACLSRPYKESNLKWTVKRV 612 Query: 120 I 120 I Sbjct: 613 I 613 >gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400] gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400] gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ + + SGY R G + L +A ++ D++++D+ L I G EI Sbjct: 3 ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGWEI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ +++PVI +TA D R + G + Y+ KP S + + I+ + Sbjct: 63 MRALRAR---RDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRR 117 >gi|34557245|ref|NP_907060.1| two-component hybrid sensor and regulator [Wolinella succinogenes DSM 1740] gi|34482961|emb|CAE09960.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes] Length = 379 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K +++++D E N+ + +++ Y + +G EALE+ + K D+I++DI + E Sbjct: 1 MSHKPTILVIDDTESNLDMLMAILK--NYDVIPALSGKEALEIVKNEKIDLILLDIMMPE 58 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E+ +++K + + IP+I +TA + E G Y++KP + K Sbjct: 59 MDGYEVCRRLKSEEATRSIPIIFITAKTDEESIELGYSIGGIDYVTKPFKPRELLARAKT 118 Query: 119 YI 120 + Sbjct: 119 QL 120 >gi|332994428|gb|AEF04483.1| two-component system response regulator (hybrid family) protein [Alteromonas sp. SN2] Length = 364 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N+ L + ++ Y G AL++ Q PD+I++DI + I G E+ Sbjct: 14 ILVVDDEPANIDLLQGILSPY-YQVKVAPTGHIALKVVEQFTPDLILLDIMMPGIDGHEV 72 Query: 65 TKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QIK L ++P+I VTA DEE+ + G YI+KPIS ++ + +K +I Sbjct: 73 CRQIKTSPALAPRLAKVPIIFVTALGQGQDEEKGFELGAVDYITKPISPALVLARVKTHI 132 >gi|329960128|ref|ZP_08298592.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328533080|gb|EGF59853.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 1343 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN+ + R+ + + Y NG AL +A+++ P++II DI + E+ G E Sbjct: 1082 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALTIAKEYLPNLIISDIMMPEMRGDE 1140 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-GE 122 + K +K D E IP+I +TA + + G + YI KP ++ I TI + Sbjct: 1141 LCKALKNDIETSHIPIILLTALNTDKNIIEGLETGADEYIVKPFNIGILRATIANLLNNR 1200 Query: 123 A 123 A Sbjct: 1201 A 1201 >gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED +L +E +GY G ++ + ++ D+I++D+ L + G Sbjct: 1 MSKVLIVEDEPKLAELMSAYLEQAGYEHHHLERGDIVVDYVKSNQVDLILLDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ KQ+++ IP+I VTA A + D + G + Y+ KP S + +K + Sbjct: 61 IEVCKQVRQ---FSGIPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 227 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D +L + G+ + +GMEA+EL ++ D+++MDI + + G Sbjct: 1 MTKILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNYDLVVMDIMMPHLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IK+ ++P I ++A + D G + Y+ KP S M I + Sbjct: 61 FSAVKEIKKTK--PQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis 11-1] Length = 1046 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 64/117 (54%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED+ N+ ++E G RNG EALE + + D+++MDI + E+ GL Sbjct: 929 LLVEDDVRNIFALSSVLEPLGVRLEIARNGREALETVGRQEFDLVLMDIMMPEMDGLTAM 988 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + + Q++P+IA+TA AM D E G YI+KP+ + + + + Sbjct: 989 REIRRNPQWQDLPIIALTAKAMADDRENCLAAGANDYIAKPVDVDKLISLCRVWCAR 1045 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++ED+ + L + + E L LA + +P I++DI L ++SGL + Sbjct: 660 ILVIEDDADFAQAMVALAHELEFDCVVAGTAEEGLALAAKLQPSGILLDIGLPDVSGLSV 719 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +++K D + +PV V+A M+ + + G Y+ KP + I++ Sbjct: 720 LERLKRDPATRHLPVHVVSA--MERSQV-ALELGAVGYLIKPATRERLASAIRQL 771 Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 43/95 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++IVED+ + L+ + +A+ + D ++ D+ L + SG Sbjct: 779 MRRLLIVEDDRDLRANLQLLLARDQLEIVAVGTIADAIAELDRSTFDCMVTDLSLPDGSG 838 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ PVI T A+ DEE+ + Sbjct: 839 YDLLERMSGSETGAFPPVIVYTGRALTRDEEQRLR 873 >gi|298375583|ref|ZP_06985540.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] gi|298268083|gb|EFI09739.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_19] Length = 826 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVEDN L+ + Y + +NG E LE+A + PD+I+ D+ + E+ Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 683 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++E L IP+I +TA + + + G +AY+ KP + I K + Sbjct: 684 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKLL 743 Query: 121 GE 122 + Sbjct: 744 EQ 745 >gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii SL3/3] Length = 1079 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59 K +++VEDNELN ++ ++++ G++ NG A+E P D+++MD+Q+ + Sbjct: 957 KHILLVEDNELNREIAQEILREYGFLVDSAENGAVAVEKVSTAAPGSYDLVLMDVQMPIM 1016 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G T++I+ D ++P++A+TA A D + G ++SKPI + ++ ++ Sbjct: 1017 DGYTATRKIRALDDPARAKLPILAMTANAFDEDRRNALESGMNGFLSKPIVIDDLVQELR 1076 Query: 118 KYI 120 K + Sbjct: 1077 KIL 1079 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 K ++V+D+ ++ G A T +G EA+ ARQ I+D +L + Sbjct: 816 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDVYHAYIIDWRLPD 875 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+E+T+QI+ + + P+I +TA+ E + G A+ +KP+ +S ET+ Sbjct: 876 MNGIEVTRQIRSLHD--DTPIIILTAYDWSDIEVEAKAAGVTAFCAKPMFMSDLRETLMS 933 Query: 119 YIGE 122 +G+ Sbjct: 934 ALGQ 937 >gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis str. Paraca] Length = 587 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ + ++ Y+ +G + ++I+DI L +++G+ Sbjct: 2 KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++PV+ +TA D+ G + Y+ KPI + ++ + A Sbjct: 62 LCRKLRSHN--YQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119 Score = 96.0 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 48/101 (47%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++ + D+ ++L L+ G + ++ PD++I+D+++ +G++ Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYIS 104 + + I+ + + +P++ +T + + G + +IS Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFIS 587 Score = 50.9 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ--EISGLE 63 +IV+ + + + + G A A + +++P +I++++ E GL Sbjct: 365 LIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGLM 424 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + I EIPV+ + + D + + G A++ KP+S ME + Sbjct: 425 LLEDI--AYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIV 475 >gi|254711121|ref|ZP_05172932.1| response regulator PleD [Brucella pinnipedialis B2/94] gi|256029502|ref|ZP_05443116.1| response regulator PleD [Brucella pinnipedialis M292/94/1] gi|261318712|ref|ZP_05957909.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis B2/94] gi|265986510|ref|ZP_06099067.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis M292/94/1] gi|261297935|gb|EEY01432.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis B2/94] gi|264658707|gb|EEZ28968.1| response regulator receiver modulated diguanylate cyclase [Brucella pinnipedialis M292/94/1] Length = 462 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 3 KKVMIVE-DNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+ D R ++ Y + AL A + D II+ Sbjct: 160 ARILVVDEDELAAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDP 218 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 LKLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIK 278 Query: 122 E 122 Sbjct: 279 R 279 >gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKALRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254513977|ref|ZP_05126038.1| two-component response regulator [gamma proteobacterium NOR5-3] gi|219676220|gb|EED32585.1| two-component response regulator [gamma proteobacterium NOR5-3] Length = 123 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 65/117 (55%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNELN + ++ +G+ AL +G +AL +P ++++D+ L + G + Sbjct: 7 LLVEDNELNRDMLSRRLKRAGFEALIAEDGAKALASIESERPALVLLDMNLPVMDGWSVC 66 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ EL P+IA+TA AM D +R + GC+ Y +KPI +E I + + Sbjct: 67 RAVRAKPELAHTPIIALTAHAMAEDRDRALEAGCDDYATKPIDFPALLEKIARLLER 123 >gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1101 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + R ++E +G+ +G L D+++MDIQ+ + G+E Sbjct: 973 RILLVEDDPVTQLAVRRMLEKAGHTVTVAGDGRAGLNALAGGSFDMVLMDIQMPTMDGME 1032 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +I++ + IP++A+TA+AM+GD ER G +AY +KP + I + Sbjct: 1033 AVARIRKGEAGPDRAGIPIVALTAYAMEGDRERFMGAGMDAYATKPTDMDTLHAVIGRLC 1092 Query: 121 GE 122 G+ Sbjct: 1093 GQ 1094 >gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294] gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056] gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058] gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059] gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294] gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 319 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ L + ++ +GY L T +G+ A+E+A + PD+I++D + + G E Sbjct: 19 ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHRCLPDMILLDGNMPHMDGFES 78 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+K Q IPVI +T + R + G Y++KP+++ + +K ++ A Sbjct: 79 CIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137 >gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 234 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 4/124 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEI 59 M +++I++D++ L RD E S G++ ++ P D++++DI L +I Sbjct: 1 MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E K+I+ S+ +PVI +TA + D + G + Y+ KP + + IK Sbjct: 61 DGFETLKKIRAISQ---VPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAV 117 Query: 120 IGEA 123 + A Sbjct: 118 LRRA 121 >gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D + L ++ GY LQ +G E L + +++ ++++DI + ++ G+ Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIH 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E +E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 65 MCMKVRE---AKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120 >gi|332709992|ref|ZP_08429948.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332351363|gb|EGJ30947.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1738 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N +L L++ GY A NG+E L+ + D+++MD+Q+ E+ GL Sbjct: 1484 RILLAEDNIVNQQLALQLLKRMGYRADVAGNGLEVLQALSRQPYDLVLMDVQMPEMDGLT 1543 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T++I E +IA+TA AM+GD E G + YISKPI + + + + Sbjct: 1544 ATQRICEQWPAHLRPWIIAMTANAMEGDREMCLSAGMDDYISKPIQVPELVRALSQ 1599 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K+++IV+D+ N + + ++ G + +G EAL+ Q K D+ I+D + E+ G Sbjct: 1338 KRLLIVDDSATNRTIISEQAKSWGMLTQTAASGREALDWLSQGDKFDIAILDGYMPEMDG 1397 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +I++ SE Q +P++ +++ + + A ++KPI S + + + + Sbjct: 1398 FTLATKIRQQSEGQALPLVMLSSMNQSDTKHHQSQLDIAAVLNKPIKQSQLHDVLTQVM 1456 >gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMD+ + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIRRA 121 >gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1353 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%) Query: 3 KKV-----MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 K++ +IVEDNE ++ + ET Y +G EALE R+ P +I+ D+ + Sbjct: 1089 KRIEDAKMLIVEDNESIKQMLVSIFETF-YQVTTASDGEEALEKVREEMPSIILSDVVMP 1147 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +SG E+ K+IK D IPV+ +TA K G + YI+KP + ++ + Sbjct: 1148 RMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCN 1207 Query: 118 KYI 120 + Sbjct: 1208 NLV 1210 >gi|255013833|ref|ZP_05285959.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_7] Length = 878 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVEDN L+ + Y + +NG E LE+A + PD+I+ D+ + E+ Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIAAEQMPDLILTDLMMPEMD 683 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++E L IP+I +TA + + + G +AY+ KP + I K + Sbjct: 684 GYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKLL 743 Query: 121 GE 122 + Sbjct: 744 EQ 745 >gi|226315460|ref|YP_002775356.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226098410|dbj|BAH46852.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 1024 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 61/117 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+D+ +N+ + ++E+ Y + +AL + ++ D++I D+ + +SG Sbjct: 697 ARIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSILERNPVDLVISDVMMPHVSGY 756 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+T+ I+E + E+PV+ +TA + D + G Y+ KP+ +K Sbjct: 757 ELTRIIRERFSVLELPVLLLTARSRSEDIIAGFQAGANDYVKKPVDAWELKARVKAL 813 >gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQ-TRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+++V+D + + L +++ G+ +Q NG +AL++ R +PDVI++DI L +I Sbjct: 1 MENKILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDFQPDVIVLDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +QI++ S ++ +++ D+ G + Y++KP S + IK Sbjct: 61 DGLEVCRQIRQFSYCS---ILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQ 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA2] gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA3] gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL097PA1] gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL099PA1] gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266] Length = 226 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+I+ED E + ++ G+ NG + LE+ + D++++D+ + + G Sbjct: 1 MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLMMPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ + +I VTA + D+ + G + Y++KP S + I+ Sbjct: 61 TEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 890 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV++VED+ N+ + +E NG ++L + +K D+++MDI + + G Sbjct: 766 KKVLLVEDDARNVFALVNALENKKMQVTVAGNGRACMDLLKDNKDFDLVLMDIMMPLMDG 825 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +++++ ELQ +P+IA+TA AMK D ++ + G YISKP+ + ++ ++ Sbjct: 826 YETMREMRKQPELQAMPIIALTAKAMKSDRDKCLEAGASDYISKPLQMDQLYSLMQVWL 884 >gi|167630674|ref|YP_001681173.1| two-component system sensor protein [Heliobacterium modesticaldum Ice1] gi|167593414|gb|ABZ85162.1| two-component system sensor protein [Heliobacterium modesticaldum Ice1] Length = 305 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +N+K+ R ++ G NG EA++LARQ++ +I+MD Q+ + G Sbjct: 31 VLVVEDNPINLKMIRSQLKQLGIDMIHTAVNGNEAVQLARQNQYGLILMDCQMPVMDGYS 90 Query: 64 ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + + P++AVTA A+ GD E+ + G + YISKP+ L E ++ ++ Sbjct: 91 ATALIRANEGQETHTPIVAVTAHALPGDREKCLEAGMDDYISKPVRLQRLFEALQCWL 148 >gi|157375725|ref|YP_001474325.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318099|gb|ABV37197.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED +L D + S + Q G E L H D+I++D+ L + GL Sbjct: 7 KQILIVEDELKLAQLLADYLCDSSFEPHQLHRGDEVLGWLASHPCDLILLDLMLPGLDGL 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ KQI++ S IP+I +TA + D + G + YI KP S + +K I Sbjct: 67 EVCKQIRQHS---NIPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVIRR 123 >gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 224 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + +GY+ + +G E L D +++DI L ++ G+ Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + + + +PV+ +TA D+ + G + Y++KP L + I+ + + Sbjct: 62 VLEAWRRNG--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119 >gi|110834104|ref|YP_692963.1| sensor histidine kinase [Alcanivorax borkumensis SK2] gi|110647215|emb|CAL16691.1| sensor histidine kinase [Alcanivorax borkumensis SK2] Length = 714 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++M+VEDNE+N + R ++ GY NG AL L Q D+++MD + E+ G E Sbjct: 584 RLMLVEDNEVNQLVTRGMLSKLGYQVKTVSNGETALALLEQEPFDLVLMDCMMPEMDGFE 643 Query: 64 ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++ +E + P++A+TA +G + R G + +++KP+ L +++++ Sbjct: 644 ATRRQREMEHSKASPRTPIVAITANTAEGVQARCLAAGMDDFLAKPVHLDALETVLRRWL 703 Query: 121 GE 122 E Sbjct: 704 PE 705 >gi|28868014|ref|NP_790633.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851250|gb|AAO54328.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|331018350|gb|EGH98406.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 254 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + + +L RQ DV+++D+ L + G E Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ IPVI +TA D R G + Y++KP + I + Sbjct: 72 LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127 >gi|56475527|ref|YP_157116.1| response regulator domain-containing protein [Aromatoleum aromaticum EbN1] gi|56311570|emb|CAI06215.1| Protein containing response regulator domain, but no DNA binding domain [Aromatoleum aromaticum EbN1] Length = 123 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 66/123 (53%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I +D + + L++ GY +G EA+ R PD++++D+ + + S Sbjct: 1 MAKKILIADDEQNIVISLEFLMKREGYEVSIANDGEEAIARIRAELPDLVLLDVMMPKKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++IK D +LQ + V+ +TA + + G +AY++KP S +E ++ + Sbjct: 61 GFEVCQEIKADPDLQSVRVLMLTAKGRDTEVAKGLALGADAYMTKPFSTKELVECVRSML 120 Query: 121 GEA 123 + Sbjct: 121 AAS 123 >gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDN + K+ + GY + NG EAL + +II DI + + G Sbjct: 1 MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ S +P+I +TA + D + G + Y+ KP+ L IK + Sbjct: 61 YQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] Length = 238 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IV+D E KL +E GYI + NG + LE + +++D+QL ++ Sbjct: 1 MAERILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++++ + PVI ++A A + + G + Y+ KP S M I + Sbjct: 61 GKSILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAIL 117 Query: 121 GE 122 Sbjct: 118 QR 119 >gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens F0305] gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens F0305] gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + + G+ +G A++LA ++PD+IIMDI L + GLE Sbjct: 14 ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIMLPVMDGLEA 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK+I ++ +P++ +TA + D+ G + Y++KP S+ + K + Sbjct: 74 TKRI---VTMRPVPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRR 128 >gi|260662341|ref|ZP_05863236.1| response regulator [Lactobacillus fermentum 28-3-CHN] gi|260553032|gb|EEX25975.1| response regulator [Lactobacillus fermentum 28-3-CHN] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ ED + + ++ +GY NG EA++LA Q DVII+DI + +++G+E Sbjct: 3 ILLAEDEKQLSRALVTAMQATGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGIEA 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 KQ+++ + VI +TA A D+ + G + Y++KP SL + ++ + Sbjct: 63 LKQLRQTGN--KTYVIMLTAMAEIDDKVTGLEAGADDYLTKPFSLKELLARLRSLERRS 119 >gi|254784921|ref|YP_003072349.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237685780|gb|ACR13044.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 300 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 64/120 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D E N+ L +E G+ + NG E L+L + PD+I++DI++ ISG Sbjct: 1 MTKVLVVDDVEDNIVLLTFELEDEGFEVIAAHNGRECLDLVHKEWPDIILLDIRMPGISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE +Q+K D ++IPV+ V+A R G ++ KPI + ++ + Sbjct: 61 LETLEQLKADESTRDIPVVMVSANTGDNSIVRALDMGAHDFVCKPIEYPVLSARMRSALR 120 >gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ + E+ G E Sbjct: 8 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ + E PV+ +TA D + G + YI KP I+ + + Sbjct: 67 VIQKIR--DKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 124 >gi|281420578|ref|ZP_06251577.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] gi|281405351|gb|EFB36031.1| two-component system sensor histidine kinase/response regulator hybrid [Prevotella copri DSM 18205] Length = 1349 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D+E + + E Y NG +AL +H +II D + E+ G E Sbjct: 1103 LIVDDDEDMRQFVKAHFEKM-YTVYTADNGKDALRKLEKHPVSLIISDWMMPEMDGPEFC 1161 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E+SE +P + +TA + G + YI KP S+ ++++ + Sbjct: 1162 RRVRENSEYSHLPFVMLTAKTDDAAKTESMNCGADVYIEKPFSMKYLEASVRQLL 1216 >gi|224538556|ref|ZP_03679095.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM 14838] gi|224519824|gb|EEF88929.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM 14838] Length = 1367 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E + ++ +E Y + +NG EA + PD++I DI + E+ GL Sbjct: 1116 RILIVEDEEEILSYLKEELEGD-YRIMTRKNGREAYDTILADTPDLVISDIMMPEMDGLS 1174 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+++ + +PVI +TA + D G +AY+ KP + + TI + Sbjct: 1175 LCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLL 1231 >gi|218258768|ref|ZP_03475054.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM 18315] gi|218225233|gb|EEC97883.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM 18315] Length = 1333 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KV+IVEDNE +++ L Y + RNG E L A + KPD+++ D+ + +SG Sbjct: 1082 SYKVLIVEDNEELLQILNALFAPF-YQVILARNGEEGLRKANEEKPDLVVSDVMMPLMSG 1140 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +IK + +L IPV+ +TA + G + YISKP + + I Sbjct: 1141 MEMCMKIKNNIDLCHIPVVLLTALDSVEYNIEGLQQGADDYISKPFHAKVLLMRCNNLIR 1200 >gi|162295955|gb|ABX83925.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116] gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 349 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SGY L +G AL ARQ PD++++D + + G E+ Sbjct: 27 VLIVDDVPDNLSVLHDALDESGYTVLVATSGEAALNRARQAVPDIVLLDAMMPGMDGFEV 86 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI---G 121 K++K +E IP+I +T + G Y++KPI M + ++ Sbjct: 87 AKRLKAMAETAHIPIIFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVMARMGVHLQGAR 146 Query: 122 EA 123 A Sbjct: 147 RA 148 >gi|311695306|gb|ADP98179.1| sensory box sensor histidine kinase/response regulator [marine bacterium HP15] Length = 783 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VEDN +N L R L+E G + +G A L + H D++ MD + + G E Sbjct: 658 KVLLVEDNPVNRTLTRRLLEKLGCDVMTANDGEAAASLWQWHPFDLVFMDCVMPRVDGFE 717 Query: 64 ITKQIKEDSELQE---IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++++E + IPV+A+TA AM+ DEER R+ G +++++KP+++ + +++Y Sbjct: 718 ATRRLREWEKTHNRARIPVVALTASAMEEDEERCRRCGMDSFVAKPVNIEMLRAVLEQY 776 Score = 81.7 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 61/126 (48%), Gaps = 5/126 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 +++++V+ EL+ K+ +++ ++ EAL R D II+D + Sbjct: 502 RRILVVDSYELSRKITLEMLSRHEVHIEAVKSAGEALTSLRTAFDGHQPFDAIILDGFVP 561 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ + +QI+ + ++ ++ +++ +GD E R+ G +A++SK + S + Sbjct: 562 DMDSDLLCRQIRSNPLWSDMRLLILSSNPQRGDAEHFRQAGADAFLSKSLRESCLTPILN 621 Query: 118 KYIGEA 123 + +A Sbjct: 622 QLFADA 627 >gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L ++ +G +G + D+I++D+ L GL Sbjct: 6 HILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ S +IPV+ +TA + + D + G + Y++KP S + IK + A Sbjct: 66 LCRQLRAKS---DIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRA 122 >gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. 2250] gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 227 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L RD + +GY NG+E + R P +I++DI L G++I Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAKPPQLILLDIMLPGRDGMDI 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+++ ++P++ +TA + D G + YI KP S + +K + + Sbjct: 70 CKELRS---FSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRS 125 >gi|260554988|ref|ZP_05827209.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|260411530|gb|EEX04827.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] Length = 247 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++ ED+ + + GY +G ALE Q D++++D+ L + G Sbjct: 1 MTRVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +P++ +TA A + D G + Y++KP L+ + ++ + Sbjct: 61 LEVARRLRAEGHT--VPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229113505|ref|ZP_04242954.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229164674|ref|ZP_04292538.1| Two-component response regulator [Bacillus cereus R309803] gi|228618754|gb|EEK75716.1| Two-component response regulator [Bacillus cereus R309803] gi|228669923|gb|EEL25317.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 221 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 9 EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQI 68 +D + L + GY ++ +G EA+ L + ++++DI + E++G E +I Sbjct: 2 DDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWETCNKI 61 Query: 69 KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +E +P+I +TA D + K G + Y++KP + I+ + Sbjct: 62 RE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 112 >gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 865 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 66/119 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V+IV+D E N ++ +E G+ + NG EA+ ++ +PDV++MD+++ + G Sbjct: 656 MRRVLIVDDAEQNRQMLHRYLEPLGFALDEACNGQEAVAKVQERRPDVVLMDLRMPVMDG 715 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 L T+ I+ S +IA++A A + + GC+ +++KP+ + M + + Sbjct: 716 LSATRAIRRLSNSHHTVIIAISASAFEENRAACLAAGCDGFLAKPVRFEVLMAQLGALL 774 >gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4] Length = 1145 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 72/126 (57%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56 ++++IVED+ N+ +++E G + RNG EAL+ + + D+++MD+ + Sbjct: 1020 RRILIVEDDVRNIYALTNILEPRGAVIEIARNGEEALQKLDRSLSSTDGRIDLVLMDVMM 1079 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GL T+ I+ + +++PVI +TA AM D++R + G Y++KP+ + + + Sbjct: 1080 PVMDGLTATRHIRNNPNWKKLPVITLTAKAMPDDQKRCIEAGANDYMAKPLDVEKLLSLV 1139 Query: 117 KKYIGE 122 + ++ + Sbjct: 1140 RVWMPQ 1145 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++VED++ + RDL + L EALELARQH P I++D+ L + SG Sbjct: 751 TRKLLVVEDDQSFAMILRDLARELSFQVLVAGTAQEALELARQHAPSAIVLDVGLPDQSG 810 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 L + ++K D + IP+ ++A + ER G Y KP+ ++ +K Sbjct: 811 LSVLDRLKRDVRTRHIPIHIISA---EDYSERALSLGAIGYAMKPVQRDELLDVLKSL 865 Score = 79.4 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 47/94 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IVEDN++ + LI + + E L L ++ D +++D+ L + SG Sbjct: 874 RRVLIVEDNQIQREAVSKLIGSQDVETVGAGTAAECLALLKEQTFDCMVLDLSLPDASGF 933 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 + + I +D+ PVI T + +EE+ + Sbjct: 934 ALLETISQDTAHSFPPVIVYTGRVLSAEEEQSLR 967 >gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 ++ ++++ED ++ +G+ L+ G EALE+ R H+ D+ ++D+ L I Sbjct: 1 MQTILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I++ ++ ++ VI +TA + + G + YI KP S + + IK + Sbjct: 61 GFEVCRKIRDFND--QLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|163788902|ref|ZP_02183347.1| two-component system sensor histidine kinase/response [Flavobacteriales bacterium ALC-1] gi|159876139|gb|EDP70198.1| two-component system sensor histidine kinase/response [Flavobacteriales bacterium ALC-1] Length = 1315 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++VEDNE L+ Y + +NG+E L++A+ D II D+ + ++ G Sbjct: 1065 SHTLLLVEDNEEIRNYITLLL-GEYYNIITAKNGVEGLKIAKNKNIDFIISDVMMPKMDG 1123 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + IK D + IP I ++A K D+ R + G +AY+ KP IK I Sbjct: 1124 FEFCEHIKSDLKTSHIPFIIISAKTAKEDKLRGYQLGIDAYLFKPFDKDELQLIIKNLI 1182 >gi|91785406|ref|YP_560612.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689360|gb|ABE32560.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 246 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D+ + L ++++G+ A +G + +P V+++DI + Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++ + +IPVI VTA D G + Y++KP + I + Sbjct: 61 GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 301 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ ++ + ++ +G AL G++AL +A + PD+I+MD + + G E Sbjct: 10 ILVVDDSPDSLGMIHQALDQAGLTALIALEGLQALSIAEKMTPDLILMDAIMPTLDGFET 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K+ L +PVI +T D R + G YI+KP+ + + I+ ++ A Sbjct: 70 CRRLKKHPGLASVPVIFMTGLTESEDVVRGLEAGGVDYITKPVRPNELIARIRVHLNNA 128 >gi|301307690|ref|ZP_07213647.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] gi|300834364|gb|EFK64977.1| putative two-component system sensor histidine kinase/response [Bacteroides sp. 20_3] Length = 1369 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + + Y L +G +A +L + PD++I D+ + G+ Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1180 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D IPVI +TA + K + + G + YISKP ++ + + ++ I Sbjct: 1181 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1237 >gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] Length = 1343 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 70/117 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VEDN +N ++ + ++E NG AL+ ++ D+++MD+Q+ + GL Sbjct: 991 KILLVEDNMINQEVAKGILEQFNPTIEVADNGQVALDRVQKEHFDIVLMDMQMPVMDGLT 1050 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+E L +P++A+TA AM+ D ++ + G ++SKPI + + I+ +I Sbjct: 1051 ATRKIREIEALAGLPIVAMTANAMERDIKQCKAAGMNDHVSKPIDIEELINAIQTWI 1107 Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 14/130 (10%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQ 57 K+V++V+DN+ + + L++ NG EA+ DV++MD ++ Sbjct: 841 KRVLVVDDNQASRDIMYALLDNLDLRVAAVSNGEEAVYEVESADLSNDGFDVVVMDWKMP 900 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAM-----KGDEERIRKGGCEAYISKPISLSIF 112 I+G E T +I+E S + VI +A+ + + + + KPI+ S Sbjct: 901 GINGDEATVKIRELSLNKMPKVILASAYGENSGLINEEVQNVFDAS----LVKPINPSSL 956 Query: 113 METIKKYIGE 122 + + + G+ Sbjct: 957 FDALMEAFGQ 966 >gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1153 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN L+ + NG +A+ P +I+ DI + + G E Sbjct: 622 KILVVDDNADMRAYLTRLLAPY-FTVSTAVNGADAIRQLATDLPQLILSDIMMPVMDGKE 680 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K++ IP+I ++A A + + G + Y+ KP S + I+ I Sbjct: 681 LLRRVKQNPVTAPIPLIFLSARAGQEARIDGLEAGADDYLVKPFSSLELLTKIRAQI 737 >gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + VED +L + T+G+ A +G E + ++ P++I++DI L G + Sbjct: 2 IYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELILLDIMLPGEDGYTL 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K++ EIPVI VTA + D+ R +GG + YI+KP + F+ +K + + Sbjct: 62 LEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLRRS 120 >gi|187925557|ref|YP_001897199.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716751|gb|ACD17975.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 246 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D+ + L ++++G+ A +G + +P V+++DI + Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++ + +IPVI VTA D G + Y++KP + I + Sbjct: 61 GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] Length = 276 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + + G+ +G EA+ + PDV+++DI L ++ GLE Sbjct: 52 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 111 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++E P + +TA D G + Y++KP SL + ++ + + Sbjct: 112 ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 169 >gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + +E SG+ ++G E L LA++ + DVI++D+ L + G Sbjct: 2 RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPVLDGWG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++E PV+ +TA D + G + Y+ KP + + I+ Sbjct: 62 VLKRLRE---THTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARR 117 >gi|294495053|ref|YP_003541546.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292666052|gb|ADE35901.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 355 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D L + ++ Y L NG +A+E+AR+ PD+I++DI + ++ G E+ Sbjct: 228 ILIVDDEPDIPDLLKLSLKDEPYDFLVAYNGKDAIEIAREKIPDLILLDIMMPDMDGYEV 287 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K++ + ++I +I +TA D+ + + G + YISKP IK + Sbjct: 288 VETLKKERDTRDIAIIMITAKTKVDDKLKGMELGIDDYISKPFDKREVNARIKMVMKR 345 >gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D L ++ GY +NG++ +E A+ + DVII+DI L EI G++ Sbjct: 2 RILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGIQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K ++ + P++ +TA D+ + G + Y++KP LS I+ + Sbjct: 62 ILKNLRNMNI--NTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRR 118 >gi|226951682|ref|ZP_03822146.1| type IV pili response regulator PilH [Acinetobacter sp. ATCC 27244] gi|294651363|ref|ZP_06728682.1| twitching motility regulator PilH [Acinetobacter haemolyticus ATCC 19194] gi|226837598|gb|EEH69981.1| type IV pili response regulator PilH [Acinetobacter sp. ATCC 27244] gi|292822765|gb|EFF81649.1| twitching motility regulator PilH [Acinetobacter haemolyticus ATCC 19194] Length = 120 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ FR+++ GY L+ NG + + +A+ PD+++MD+ + ++G Sbjct: 1 MARILIVDDSPTETFRFREILTKHGYEVLEATNGADGVTMAQAELPDLVLMDVVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+QI + + Q IPV+ V+ D ++ G Y++KP+ ++ IK+ + Sbjct: 61 FQATRQISKAKDTQHIPVVIVSTKDQATDRVWGKRQGASDYLTKPVDEQQLIDVIKQLL 119 >gi|224537529|ref|ZP_03678068.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM 14838] gi|224520842|gb|EEF89947.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM 14838] Length = 1373 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN+ + + +D++ Y L NG E L L +Q PD+II DI + +I G+ Sbjct: 1116 TILMIDDNKELLWMLKDILSDE-YSILTAENGEEGLVLLKQKTPDLIITDIMMPKIDGIT 1174 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + KQ+K + IP+I ++A ++ + G +AYI KP + IK+ + Sbjct: 1175 LIKQLKSNKHTMHIPLIILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRSIIKQLL 1231 >gi|170077489|ref|YP_001734127.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885158|gb|ACA98871.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 764 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 65/113 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN N K+ +++ GY NG+E LE Q DVI+MDIQ+ E+ GL+ Sbjct: 642 KILLAEDNLTNQKVVAKILKNLGYQVDIVSNGLEVLEAVEQQIYDVILMDIQMPEMDGLD 701 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 TK + + + VIA+TA AM+ D + G + YI+KP+ L + ++ + Sbjct: 702 ATKALLKLNLEPHPYVIALTANAMQHDRLACLEVGMDDYITKPVRLDLLVQAL 754 >gi|187736215|ref|YP_001878327.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] gi|187426267|gb|ACD05546.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] Length = 234 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I ED++ D++ SGY L G+ A+ R+ D+ ++D+ + G + Sbjct: 7 TILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGADGFQ 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + E PVI +TA + D + K G + YI KP S+ + I+ + + Sbjct: 67 VLQVM--SEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRRS 124 >gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 226 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + ++ GY ++ NG LE+A + + D++++DI L EI+G Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++++ +IP+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112] gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri] gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E ++ GY +G LE A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E L++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVARRVRE---LKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|71065720|ref|YP_264447.1| putative two component system regulatory protein [Psychrobacter arcticus 273-4] gi|71038705|gb|AAZ19013.1| putative two component system regulatory protein [Psychrobacter arcticus 273-4] Length = 233 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++EDN + E G+ NG+ L LA ++ DVI++D+ L + G Sbjct: 6 MYKILLIEDNPDIVANIYAFFEPKGFELDNAHNGLSGLALAANNRYDVILLDVMLPGMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K ++E+ + PV+ +TA D+ G + Y+ KP SL IK I Sbjct: 66 TKLCKMLREELHDK-TPVLMLTARDTILDKVAGFDSGADDYLVKPFSLVELEARIKALIR 124 Query: 122 E 122 Sbjct: 125 R 125 >gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1188 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/116 (35%), Positives = 70/116 (60%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY + NG AL++ D ++MDIQ+ + GL Sbjct: 1066 VLLVEDNFINQQVATELLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMDGLTA 1125 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E +P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +I Sbjct: 1126 ARALRERYSADVLPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLTHWI 1181 Score = 96.0 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ L+ + +G EAL + D++++D + E+ G + Sbjct: 920 RTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGSD 979 Query: 64 ITKQIK---EDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I + + + P +I +TA+A + + A + KP S + I Sbjct: 980 VISAIDTMVAEGRIAKRPIIIMMTAYAAEPLLHEVDSANVFAVLQKPFKASSLFDEI 1036 >gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 240 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + IV+D++ ++ ++E G+ + +G+ A+E+ KPD+I++D+ L + G Sbjct: 1 MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++I+ +P+I +TA + D + G + Y+ KP ++ + I+ Sbjct: 61 TGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 114 >gi|332526126|ref|ZP_08402264.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109969|gb|EGJ10597.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED +L + +GY +A + PD++++D L SG Sbjct: 1 MSHVLVVEDESAIAELISINLRHAGYEVTVAATADQAQAAVDRVLPDLVLVDWMLPGQSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++ + ++ +EIP+I +TA + D+ G + Y++KP S + ++ + Sbjct: 61 LQLARRWRAETRTREIPIIMLTARNEEADKIAGLDAGADDYLTKPFSPKELLARMRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] Length = 249 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D L + +G+ +G AL+ + PD++++D+ L ++ G Sbjct: 15 AHLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGF 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E P++ +TA D+ + G + Y++KP L + I+ + Sbjct: 75 TVARRLRERDVT--TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRR 132 >gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++VED+ ++ +D + GY G+E LE D+I++D + E+ Sbjct: 1 MEQQILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSYDLILVDWMMPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I+ S ++P+I ++A + + D+ + + Y++KP SL ++ I Sbjct: 61 GLSMIEHIRLQS---DVPIIMISAKSNESDKVTGLQ-DADDYLAKPFSLEELKARVRSQI 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|239929290|ref|ZP_04686243.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M++ED++ + G+ +G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114 >gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 863 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 75/123 (60%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED+ ++ + ++E +G ++G EAL+L + D+I+MDIQ+ + G++ Sbjct: 737 RILIAEDDTVSSLTCKRMLEKTGSSVTSVKDGKEALQLLCEKVFDLILMDIQMPVMDGVD 796 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+E + IP+IA+TA+AM GD+E+ + G YISKP+ + E I++ + Sbjct: 797 ATRAIREGRAGEDKASIPIIAMTAYAMTGDKEKFLEAGMNDYISKPVEMETLKEVIERVM 856 Query: 121 GEA 123 +A Sbjct: 857 EKA 859 >gi|224537326|ref|ZP_03677865.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM 14838] gi|224521057|gb|EEF90162.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM 14838] Length = 1313 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++DN + + +++ Y L +G +A + + ++ DV+I D+ L + +G E+ Sbjct: 1065 ILLIDDNTELLFVMKEMFRER-YTVLTAADGQQAWDKLKNNEVDVVICDVMLPDANGWEL 1123 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++K D IPVI +TA D + G + YI+KP L I + I + Sbjct: 1124 CARMKGDLRFNHIPVIILTAKNGIEDRVASYEAGADGYIAKPFELKILFARVDNLIRSS 1182 >gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ +L D + GY +G++ LE+ + +I+D+ + ++ G E+ Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 KQ+++ S +IPV+ +TA + D + G + Y+ K S + ++ Sbjct: 73 LKQLRKQS---DIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRR 127 >gi|213971081|ref|ZP_03399201.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301384196|ref|ZP_07232614.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060880|ref|ZP_07252421.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302132855|ref|ZP_07258845.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924189|gb|EEB57764.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] Length = 254 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + + +L RQ DV+++D+ L + G E Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ IPVI +TA D R G + Y++KP + I + Sbjct: 72 LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127 >gi|254412501|ref|ZP_05026275.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180811|gb|EDX75801.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 650 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IV+D N+++ + GY G A+ A+ +PD+I++DI++ E+ Sbjct: 1 MTKGNLLIVDDTPENLQVLSATLSEQGYQVRGVVKGKMAIRAAKSAQPDLILLDIRMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ + +K D E ++IP+I ++A D+ + + G YI+KP + + ++ Sbjct: 61 DGYQVCETLKADPETRDIPIIFISAIDDVLDKVKAFRVGGVDYITKPFQVEEVLARVEHQ 120 Query: 120 I 120 + Sbjct: 121 L 121 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 11/129 (8%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D N L L+E G+ + NGME L L +P +I MD ++ + GLE Sbjct: 425 RILVVDDTPENRLLLTKLLEPIGFEVREAANGMECLPLWETWQPHLIFMDTRMPMMDGLE 484 Query: 64 ITKQIKEDS-----------ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 T+++K +L +IA+TA A + E I G E ++ KP + Sbjct: 485 ATRRLKSKEKERLSQSNSVLDLSRTIIIALTASAFEERREEILAAGSEDFVRKPFTEEQI 544 Query: 113 METIKKYIG 121 +TI ++G Sbjct: 545 FDTIAHHLG 553 >gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ L NG EAL++ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED E + + +E GY NG AL+ + D+II+DI L E+ G+ + Sbjct: 9 ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIMLPEMDGIAV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + I+ + E+P++ ++A D K G + Y++KP +L + ++K I Sbjct: 69 CENIRIQNN--EVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLI 122 >gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D++ ++L I+ GY + NG EAL + K D++++D+ + + G+ Sbjct: 2 KILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDGI 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+++++ +L P++ ++A D+ + G + Y++KP + M IK + Sbjct: 62 QVVKEVRKELQL---PILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRR 118 Query: 123 A 123 + Sbjct: 119 S 119 >gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 304 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + L D +E + L G +AL +AR+ +PD+I++D + + G E Sbjct: 11 VLVVDDSPDALSLIHDTLEAANMDVLVALEGKQALTIARRIRPDIILLDAIMPNMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +K D L IPVI +T + D R + G Y++KPI + + ++ ++ A Sbjct: 71 CRALKADQSLASIPVIFMTGLSDTDDIVRGLEAGGVDYLTKPIQPNELIARMRVHLSNA 129 >gi|153806265|ref|ZP_01958933.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185] gi|149130942|gb|EDM22148.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185] Length = 1330 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++IVEDN+ + + Y NG EAL +A++ PD+I+ DI + E+ G Sbjct: 1062 SQRILIVEDNDELRSYLVSSLSSM-YHVQACGNGREALIIAKEFWPDLILSDIMMPEMRG 1120 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ IK D E IPV+ +TA + + G +AYI KP ++ I +I + Sbjct: 1121 DELCVAIKNDIETSHIPVLLLTALGDENNILDGMSIGADAYIVKPFNVRILKASIANLLA 1180 Query: 122 -EA 123 A Sbjct: 1181 NRA 1183 >gi|323492710|ref|ZP_08097854.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] gi|323313085|gb|EGA66205.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG 20546] Length = 770 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 71/121 (58%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN N + R++ + G NG +A+E+ +Q++ DVI MDI + E+ G++ Sbjct: 491 RVLVAEDNRANQLVIREMFKRIGLNIDIAENGRQAIEMVQQYQYDVIFMDISMPEMDGMQ 550 Query: 64 ITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K I+ D ++P+IA+TA ++ GD+E+ G Y+SKP+ S ++ I ++ Sbjct: 551 ACKAIRNLDDPATAKLPIIALTAHSLAGDKEKFLASGMNDYLSKPLRASQLIDKINLFLN 610 Query: 122 E 122 E Sbjct: 611 E 611 >gi|308271052|emb|CBX27662.1| hypothetical protein N47_H24840 [uncultured Desulfobacterium sp.] Length = 1019 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 KKV+IV+D+ N+ ++IE G L +NG E LE + D+++MDI + E++G Sbjct: 898 KKVLIVDDDMRNVFAVSNIIEEKGMEVLVGKNGREGLERLNGNPDIDLVLMDIMMPEMNG 957 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E +I++ + +P+IA+TA AM G+ + + G Y++KP + + ++ ++ Sbjct: 958 YEAMTEIRKQMRFKSLPIIALTAKAMTGERNKCLEAGASDYLAKPFDIDKLLSLMRVWL 1016 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++I+ED+ ++ DL G+ L +G L A +KP+ +I+DI L + GL Sbjct: 629 KSILIIEDDSKFAEVLLDLARERGFKGLIAGSGETGLHFADYYKPNAVILDIGLPGMDGL 688 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI---FMETIKKY 119 + +++KE++ + IPV ++A K + G Y++KP+SL + I+ Sbjct: 689 SLMERLKENAATRHIPVHFISASDDKS--IIAMRMGAIGYLTKPVSLEDIDSVFKKIENI 746 Query: 120 I 120 I Sbjct: 747 I 747 Score = 83.3 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDNE+ +L+E + G A EL + D +I+D+ L+++SG + Sbjct: 753 RLLVVEDNEIERNNIVELLEGKDVQIEISGGGDAAYELLKTGTFDCVILDLDLEDMSGPD 812 Query: 64 ITKQIKEDSELQEIPVIAVTAF--AMKGDEERIRKGGC 99 K+IK D + +IPVI T + + + R+ G Sbjct: 813 FIKKIKNDKNISDIPVIIYTGKEFSREDEAVLNRQAGA 850 >gi|294776040|ref|ZP_06741536.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|294450178|gb|EFG18682.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] Length = 1365 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDNE + L L+ Y L++ NG EALE+ + + D+I+ D+ + E+ G+E Sbjct: 1115 TILLVEDNEELLALMVRLLHGK-YHILKSANGTEALEILAKQEVDLIVSDVMMPEMDGME 1173 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++K E IP+I +TA D + G + YI KP+ LS+ I + Sbjct: 1174 LCRRVKTQFETCHIPLILLTAKTSDEDHVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1232 >gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++VED ++ + + SG++ +G E L+ A + DVI++DI L + Sbjct: 1 MSKRILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+++ + ++ ++A + D G + Y++KP S + IK I Sbjct: 61 GFAVCKELRAQNI--STYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAII 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|302381374|ref|YP_003817197.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192002|gb|ADK99573.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 234 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +V+D+E + +E+ G+ + +G LE PD+ I+D+++ + G Sbjct: 1 MANITLVDDDENIVASVSLALESHGHKVVAYHDGATGLEALEASPPDLAILDVKMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++++ +IPVI +T+ + DE G + Y+ KP S + +E +K + Sbjct: 61 MEVLRRLRQ---TSQIPVIMLTSKDEEIDEILGFNLGADDYMHKPFSQRLLIERVKALLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 237 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ VED+++ + +E G++ +G+ LE R ++PD+ ++D+ + + G+ Sbjct: 5 HVLFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRANRPDIALLDVMVPGMDGVS 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP S+ + I+ + Sbjct: 65 LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRR 120 >gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 218 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++I+ED E L + + +GY + Q +G+EAL L ++ D+I+MDI L + Sbjct: 1 MKINILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K+IK+ IPVI +TA D+ K G E YI KP + I+ + Sbjct: 61 GFELMKRIKDL----NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146] gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202] gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC 23685] gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202] gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC 23685] gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda FL6-60] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 242 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + KL ++ GY LQ +G E LE+ ++ +I++DI + +I G+ Sbjct: 14 TILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGIH 73 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + E+P+I ++A D+ G + Y++KP + + IK + Sbjct: 74 MCMKVRE---IAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129 >gi|227500016|ref|ZP_03930095.1| response regulator [Anaerococcus tetradius ATCC 35098] gi|227217913|gb|EEI83200.1| response regulator [Anaerococcus tetradius ATCC 35098] Length = 227 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED+E + L +E YI + EA+ ++ + D+ I+DI L + Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E P+I +T+ + + + G + Y++KP + +K + Sbjct: 61 GYYLCKKIRESFNY---PIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + +L + G+ +G AL + DV ++D+ L +I Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + I++ PV+ +TA D+ G + Y++KP + + +K + Sbjct: 61 GFQLLQNIRKTHFF---PVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01] gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3] gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01] gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp. RED65] Length = 553 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 69/116 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN+ N + +++ GY +G EAL + D+++MD Q+ + G Sbjct: 437 RILVAEDNKTNQLVISTMLKRLGYQYDLCGDGQEALSQLDKQDYDLVLMDCQMPTMDGFI 496 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+++ +L+ +P+IA+TA A + ++++ G ++SKPI L++ + ++++ Sbjct: 497 ATQNIRKNPDLKNLPIIALTAGATEKEQKQCFDSGMNDFLSKPIKLNVLKDALERW 552 Score = 40.5 bits (95), Expect = 0.083, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYI-----ALQTRNGMEA-LELARQHKPDVIIMDIQLQE 58 V++V+D+E +L + ++ + + EA +A V ++D+ ++ Sbjct: 32 VLVVDDDEYVHQLTKMVLRGFTFEGSPIRLASALSAKEAKYYIATHDNVAVALVDVVMET 91 Query: 59 IS-GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIR-KGGCEAYISK-PISLSIFMET 115 + GL++ I+E+ EI ++ T EE + Y+SK I+ Sbjct: 92 DNAGLDLVNFIREEHNNNEIRLLIRTGQPGAAPEESVFQDYDINDYLSKTDITAHKLRMA 151 Query: 116 IKKYIG 121 + + Sbjct: 152 LLNALR 157 >gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044] gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43] gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185] gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088] gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43] gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088] gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185] gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 244 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 11 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 71 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 127 >gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 848 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++ EDN +N +D E G+ NG LE R D+I+MDIQ+ + GLE T Sbjct: 623 LLAEDNRINQFFLKDYFEAMGHSVDIAENGRLVLEKLRSKPYDLILMDIQMPHMDGLEAT 682 Query: 66 KQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + I+ D +IP++A+TA+A+ D + + G +AY+ KPI+ I +G Sbjct: 683 RIIRSSNDEPWADIPIVALTAYALSQDRSKAMEAGMDAYVLKPINFEELEREIVHALG 740 >gi|315606849|ref|ZP_07881858.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] gi|315251514|gb|EFU31494.1| two component system sensor histidine kinase/response regulator [Prevotella buccae ATCC 33574] Length = 1298 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++D ++L + + + ++ +G + LE A + PD+I+ D+ + + G+E Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAARTLPDIIVCDLMMPNMDGME 1113 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +K D +L I VI TA + D G +AY++KPISL + + I + + ++ Sbjct: 1114 FLHMLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQS 1173 >gi|308070222|ref|YP_003871827.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305859501|gb|ADM71289.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 266 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ ++L + ++ Y +G +E R ++PD +++DI + I G Sbjct: 31 MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMPGIDG 90 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + Q++E E+P+I ++A + D + GC +++KP + + +K + Sbjct: 91 LSLLTQLRE---FTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLR 147 >gi|289663273|ref|ZP_06484854.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++VED+ + + + G+ +G A++L RQ PD++++D+ L ++SG+ Sbjct: 4 KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I+ + PVI VTA + ++ + G + Y+ KP S + + + Sbjct: 64 EVLSAIRRAG---DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|266624372|ref|ZP_06117307.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288863787|gb|EFC96085.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 230 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I +D+E +++ + L+ GY + +G EA+ LA D+II+D+ + S Sbjct: 1 MAQRILIADDSEEIIEILQILLTGEGYEVVTAGDGEEAVRLADD-TIDLIILDVMMPVKS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I++ + P++ +TA D+ G + Y++KP S S + K + Sbjct: 60 GYVACSEIRKKTMA---PILFLTARTQDSDKSMGFSAGGDDYLAKPFSYSELLSRCKSLL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 844 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++VED+ N ++ +L+E G+ NG EA+EL P +I MD+ L + G Sbjct: 629 SYRLLVVEDHPTNRQVLVNLLEPIGFQVKTADNGQEAVELWETWHPHLIWMDLHLPIMDG 688 Query: 62 LEITKQIKEDSE-----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E T+QIK E + +IA+TA A + + GC+ +++KP S I ++ I Sbjct: 689 YEATRQIKAKMEKFPLDIYPTKIIALTASAFAQERSAMLALGCDDFVTKPFSEGIILDKI 748 Query: 117 KKYIG 121 +++G Sbjct: 749 AQHLG 753 >gi|254409963|ref|ZP_05023743.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196182999|gb|EDX77983.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1525 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGL 62 K++IV+D+ +N ++ + + Y Q NG EAL++ +PD+I++D + ++G Sbjct: 978 KILIVDDDTVNRQILVNYLSLENYQLAQAANGREALDIINNGFQPDLILLDAIMPRMTGY 1037 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++E E+PV+ +TA D G Y++KPI+ + IK ++ Sbjct: 1038 DVCKKLREFYPPTELPVLMLTANEQVNDLVAGFSVGVNDYLTKPIAKYKLLVRIKTHLR 1096 >gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 844 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++VED+ N ++ +L+E G+ NG EA+EL P +I MD+ L + G Sbjct: 629 SYRLLVVEDHPTNRQVLVNLLEPIGFQVKTADNGQEAVELWETWHPHLIWMDLHLPIMDG 688 Query: 62 LEITKQIKEDSE-----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E T+QIK E + +IA+TA A + + GC+ +++KP S I ++ I Sbjct: 689 YEATRQIKAKMEKFPLDIYPTKIIALTASAFAQERSAMLALGCDDFVTKPFSEGIILDKI 748 Query: 117 KKYIG 121 +++G Sbjct: 749 AQHLG 753 >gi|170699335|ref|ZP_02890383.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] gi|170135765|gb|EDT04045.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] Length = 277 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++L +++ ++ +G++A A+ PD+I+MD+++ + G Sbjct: 20 AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + Q IPVI +TA A D + G YI KP + I+ ++ Sbjct: 80 AACRLLASTPSTQNIPVIILTAAADLEDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139 Query: 123 A 123 A Sbjct: 140 A 140 >gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 226 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + ++ GY ++ NG LE+A + + D++++DI L EI+G Sbjct: 1 MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++++ +IP+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRLR---RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii M21/2] Length = 1084 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59 K +++VEDNELN ++ ++++ G++ NG A+E P D+++MD+Q+ + Sbjct: 962 KHILLVEDNELNREIAQEILREYGFLVDSAENGAVAVEKVSTAAPGSYDLVLMDVQMPIM 1021 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G T++I+ D +IP++A+TA A D + G ++SKPI + ++ + Sbjct: 1022 DGYTATRKIRALDDPARAKIPILAMTANAFDEDRRNALESGMNGFLSKPIVIDDLVQELH 1081 Query: 118 KYI 120 K + Sbjct: 1082 KIL 1084 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 K ++V+D+ ++ G A T +G EA+ ARQ I+D +L + Sbjct: 821 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDVYHAYIIDWRLPD 880 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+E+T+QI+ + + P+I +TA+ E + G A+ SKP+ +S ET+ Sbjct: 881 MNGIEVTRQIRSLHD--DTPIIILTAYDWSDIEVEAKAAGVTAFCSKPMFMSDLRETLMS 938 Query: 119 YIGE 122 +G+ Sbjct: 939 ALGQ 942 >gi|301310542|ref|ZP_07216481.1| response regulator DrrA [Bacteroides sp. 20_3] gi|300832116|gb|EFK62747.1| response regulator DrrA [Bacteroides sp. 20_3] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL+ +++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK-DLTVYNLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++D + P+I +TA + D G + YISKP S+ + +K + Sbjct: 64 MARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122 >gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + + +E GY +G+ E + P V ++D+ L + G+E Sbjct: 6 RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVMLPNLDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ +PV+ ++A D + + G + Y+ KP S+ + I+ + Sbjct: 66 LCRRIR---GCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRR 121 >gi|323527545|ref|YP_004229698.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384547|gb|ADX56638.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 246 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D+ + L ++++G+ A +G + +P V+++DI + Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++ + +IPVI VTA D G + Y++KP + I + Sbjct: 61 GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ +I++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + +P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|150007457|ref|YP_001302200.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|255013954|ref|ZP_05286080.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262382003|ref|ZP_06075141.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375433|ref|ZP_06985390.1| response regulator DrrA [Bacteroides sp. 3_1_19] gi|149935881|gb|ABR42578.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|262297180|gb|EEY85110.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298267933|gb|EFI09589.1| response regulator DrrA [Bacteroides sp. 3_1_19] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL+ +++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK-DLTVYNLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++D + P+I +TA + D G + YISKP S+ + +K + Sbjct: 64 MARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122 >gi|148283360|gb|ABQ57262.1| AdeR [Acinetobacter baumannii] Length = 220 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 10 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 70 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 124 >gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1713 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +KV+IV+D+ N + G+ NG EA+E + K ++++MD + E+ G Sbjct: 1592 RKVLIVDDDMRNTYALSKKLIEYGFEVEMAHNGKEAVEQLTEDKSFELVLMDTMMPEMDG 1651 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + TK+I+E +++P+IA+TA M D E+ + G Y++KPI + ++ ++ Sbjct: 1652 YQATKRIREMEHYKQVPIIALTAKTMPEDREKSLQSGASEYLTKPIDFEKLLSIMRIWL 1710 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D+ + K+ RD GY +L +G + LA++++P+ II+DI L +I G ++ Sbjct: 1325 ILIIDDDPVFAKILRDHARECGYQSLVAGDGRMGIFLAQEYQPNGIILDIMLPDIDGHQV 1384 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKY-- 119 +Q+K + + IPV ++A D+ G +KP+S + IK + Sbjct: 1385 LEQLKFSLKTRHIPVEIISAHN--EDKNAALVQGAIGLQTKPVSQETLLSVFDEIKSFSS 1442 Query: 120 --IGE 122 + Sbjct: 1443 SELRR 1447 Score = 77.1 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 44/90 (48%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++++ED+ N L+E S G E +E + D II+D+ L +ISG Sbjct: 1446 RRLLVIEDDAGNQTSIVRLLEGSDIDIKCVDKGTEGVEEILSGQYDCIILDLGLPDISGF 1505 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE 92 E+ KQI+ + PVI T + E+ Sbjct: 1506 EVLKQIESSKLERIPPVIIYTGKEITDQEQ 1535 >gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 247 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 21 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 81 CRRVREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 >gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 226 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I+ED +L + +E GY +G+ +L Q D+IIMDI L +I+G++ Sbjct: 2 HILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAYDLIIMDIILPKINGID 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++IKE ++P+I +TA D+ G + Y+ KP I+ + Sbjct: 62 LCREIKE--SYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKR 118 >gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 242 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 5/121 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH---KPDVIIMDIQLQEISGL 62 ++VED++ + +++ G+ +G AL L D+I++D+ L + GL Sbjct: 16 LVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGLGGL 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ + P++ ++A + D + G + Y+ KP L + + + Sbjct: 76 DLCRELRRINNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 133 Query: 123 A 123 + Sbjct: 134 S 134 >gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 228 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED + + +E G+ A NG A E Q D+I++D+ L + G+E Sbjct: 6 HVLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + +P+I +TA D G + YI+KP ++ + ++ + Sbjct: 66 ICRRVR---TVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRR 121 >gi|209526276|ref|ZP_03274806.1| histidine kinase [Arthrospira maxima CS-328] gi|209493373|gb|EDZ93698.1| histidine kinase [Arthrospira maxima CS-328] Length = 335 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D+ +L R ++ GY ++G EA+ +Q+ PD++I+DI + EI+G Sbjct: 128 KTILIVDDDPSIRELLRQELDAEGYNVRLAKDGREAISQIKQNPPDLVILDIIMPEINGF 187 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +K D E Q IP++ V+A R + G + Y++KP++ ++ +K Sbjct: 188 DVAAILKHDPETQHIPILVVSADDSVS---RGYQVGVDKYLTKPVAQETLLQEVKSLFAR 244 Score = 44.0 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 31/49 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII 51 K+V+IV+ + +++ ++++T GY+ QT+ E L R KPD++I Sbjct: 249 KRVLIVDRDISTLEILNEVLKTQGYLVSQTQGEEEFLPQIRAMKPDLVI 297 >gi|147920988|ref|YP_685202.1| putative response regulator (CheY-like) [uncultured methanogenic archaeon RC-I] gi|110620598|emb|CAJ35876.1| putative response regulator (CheY-like) [uncultured methanogenic archaeon RC-I] Length = 132 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+MIV+D + L + ++++ GY + +G EALE PD++++DI + ++ Sbjct: 1 MANKIMIVDDEPDVVDLVKIVLKSEGYEVVTATSGKEALEKIGNEMPDLVLLDIMMPQMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK-GGCEAYISKPISLSIFMETIKKY 119 G E+ IK +++ ++IPV +TA + D+ + YI+KP + +E +KK Sbjct: 61 GWEVYNHIKSNTKTRDIPVAMLTAKSQSIDKMIGLHVVQVDDYITKPFGRAELLERVKKI 120 Query: 120 I 120 + Sbjct: 121 L 121 >gi|71908547|ref|YP_286134.1| PAS [Dechloromonas aromatica RCB] gi|71848168|gb|AAZ47664.1| PAS protein [Dechloromonas aromatica RCB] Length = 955 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 69/120 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED +N ++ +++ G IA +G+ A+ + ++ D+I+MD+Q+ + GL Sbjct: 834 RILLVEDEPINQEIALAMLDDVGLIADVAEDGVVAIAMLDRNDYDLILMDMQMPRMDGLT 893 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T++I+E + I ++A+TA A D+ R + G +I+KP+ + K++ ++ Sbjct: 894 ATRKIREQAGKAGIVILAMTANAFAEDKVRCLEVGMNDFIAKPVDPGHLYAMLVKWLSKS 953 >gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D + + + +++ G+ + + EA+ + ++ K D++++D+ + +SG E Sbjct: 6 ILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVMMDGMSGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+E + P+ +TA D+ G + YI+KP + + I+ ++ Sbjct: 66 ACAAIRE---YSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKR 121 >gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++ +D ++ G+ +G EAL +P V+++D+ + +++ Sbjct: 1 MSKRILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVMMPKLN 60 Query: 61 GLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ +++ P VI +T D+ + G + Y++KP + + Sbjct: 61 GFDVCRRL----PTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNAL 116 Query: 120 IGE 122 + Sbjct: 117 LRR 119 >gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703] gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|288941950|ref|YP_003444190.1| response regulator receiver protein [Allochromatium vinosum DSM 180] gi|288897322|gb|ADC63158.1| response regulator receiver protein [Allochromatium vinosum DSM 180] Length = 121 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K ++ V+D+ ++ ++ +GY + +G + L+ AR K D+I D + + Sbjct: 1 MAKTILTVDDSASIRQMVSFTLKEAGYAVTEAVDGQDGLDKARSGKFDLIFTDQNMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + KQ++ + +P++ +T + + + R G ++ KP + +E ++K I Sbjct: 61 GLSLIKQLRALPTYKSVPILMLTTESSDAMKSQGRAAGATGWLVKPFDPAKLLEVVRKVI 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 235 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++++D +L + +GY +G E L +A + PD++IMD+ + + G Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++E PVI ++A D+ + G + Y+ KP + I+ ++ Sbjct: 61 FTTCRLMRERGIT--CPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator [Bacteroides finegoldii DSM 17565] Length = 1476 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 1218 TLLLVEDNRDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 1276 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1277 MLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1335 >gi|170695738|ref|ZP_02886880.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139343|gb|EDT07529.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 246 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D+ + L ++++G+ A +G + +P V+++DI + Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++ + +IPVI VTA D G + Y++KP + I + Sbjct: 61 GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 224 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I+ED E ++ GY +G + LE A + D+I++D+ L ++G Sbjct: 1 MQHILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ + P+I +TA D G + Y+ KP ++ + ++ Sbjct: 61 IEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1166 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 3/124 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 +V++VEDN +N ++ +L+ +G +G AL+L P D+++MDIQ+ ++ G Sbjct: 828 ARVLLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVLMDIQMSDMDG 887 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI- 120 T+Q+++D + +PV+A+TA AM D E+ + G + +I KPI + ++I Sbjct: 888 YATTRQLRQDPRFKTLPVVAMTAHAMVSDREKALQLGMQDHIPKPIEPEQLFAALVQWIK 947 Query: 121 -GEA 123 +A Sbjct: 948 PRQA 951 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V++V+DN ++ + + +G AL++ P++I++D Q+ +SG+ Sbjct: 681 RVLVVDDNATAREILEEQLNAFHMEVCSVASGEAALDVLHHEPRPELILLDDQMTGLSGV 740 Query: 63 EITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E ++++ L IP V+ ++ + + G ++ KPIS S+ +ET+ Sbjct: 741 ETVRRLRGQINLARIPEVLMLSDHGREKVRQEAEALGITHFMCKPISPSVLLETL 795 >gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D++ + ++ GY ++ G +AL+ + K +++MD+ + E+ GL Sbjct: 6 ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVMMPELDGLSA 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+E+ IP+I ++A + D+ G + Y++KP + + +K + Sbjct: 66 TVKIREEL---NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRR 120 >gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933] gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai] gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. MG1655] gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073] gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T] gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301] gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046] gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227] gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197] gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. W3110] gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89] gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536] gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401] gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1] gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638] gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A] gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS] gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4113] gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4401] gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4501] gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4486] gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4196] gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4076] gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC869] gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC508] gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739] gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. DH10B] gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5] gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94] gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638] gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99] gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A] gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11] gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22] gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019] gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171] gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012] gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1] gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str. EC4024] gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str. EC4024] gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342] gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4206] gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4045] gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4042] gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4115] gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11] gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str. E2348/69] gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. TW14588] gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469] gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1] gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88] gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a] gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989] gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39] gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026] gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972] gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA] gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli BW2952] gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str. TW14359] gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9] gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B] gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96] gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O103:H2 str. 12009] gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O26:H11 str. 11368] gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O111:H- str. 11128] gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str. FRIK966] gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168] gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220] gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Klebsiella sp. 1_1_55] gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str. CB9615] gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103] gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430] gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412] gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354] gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302] gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661] gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1] gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7] gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1] gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1] gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1] gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1] gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1] gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1] gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1] gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1] gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1] gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1] gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1] gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1] gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1] gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1] gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1] gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101] gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736] gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617] gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7] gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75] gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70] gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3] gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736] gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605] gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718] gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206] gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143] gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271] gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591] gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299] gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9] gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis [Escherichia coli O157:H7 str. EDL933] gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073] gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli] gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi] gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12 substr. MG1655] gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. MG1655] gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri] gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai] gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhi] gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T] gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301] gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046] gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF [Shigella dysenteriae Sd197] gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227] gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K12 substr. W3110] gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89] gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536] gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401] gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1] gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS] gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A] gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. DH10B] gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5] gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC 3083-94] gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4196] gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4113] gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis Et1/99] gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638] gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4076] gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4401] gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4486] gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4501] gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC869] gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC508] gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A] gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11] gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22] gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019] gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171] gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012] gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1] gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342] gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4206] gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4045] gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4042] gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4115] gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli] gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli] gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli] gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli] gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli] gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11] gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O127:H6 str. E2348/69] gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. TW14588] gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli 55989] gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia fergusonii ATCC 35469] gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli IAI1] gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli S88] gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli IAI39] gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli ED1a] gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli UMN026] gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82] gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96] gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA] gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972] gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli BW2952] gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli O157:H7 str. TW14359] gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O26:H11 str. 11368] gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O103:H2 str. 12009] gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O111:H- str. 11128] gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15] gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017] gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168] gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM 12163] gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042] gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Klebsiella sp. 1_1_55] gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str. CB9615] gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC 29220] gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103] gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412] gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354] gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430] gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034] gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302] gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661] gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1] gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1] gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1] gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1] gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1] gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1] gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1] gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1] gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1] gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1] gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1] gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1] gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1] gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7] gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1] gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1] gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1] gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101] gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU 83972] gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146] gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7] gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617] gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70] gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617] gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC BAA-2158] gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75] gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG 857C] gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str. 2457T] gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli W] gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1] gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1] gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3] gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1] gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3] gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431] gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae CDC 74-1112] gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC 796-83] gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. EC1212] gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli WV_060327] gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli EC4100B] gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101] gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str. 493-89] gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H 2687] gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str. LSU-61] gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14] gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010] gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G] gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68] gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180] gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357] gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1] gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2] gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3] gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227] gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. 1044] gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. 1125] gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v] gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355] gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3] gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli AA86] gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736] gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605] gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718] gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206] gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143] gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271] gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591] gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299] gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82] gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae 155-74] gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74] gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9] gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88] gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671] gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70] gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71] gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71] gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6] gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272] gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218] gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304] gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|315921700|ref|ZP_07917940.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695575|gb|EFS32410.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1334 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y+ NG EAL + ++KP+++I DI + E+ G Sbjct: 1069 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ + IK + E IPVI +TA + D + G + Y+ KP ++ I + + Sbjct: 1128 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV+I+ED E + + +I ++ G E L ARQ PDV+++D+ L IS Sbjct: 1 MESKVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ + +++ EL + +I +TA D+ + + G + Y+ KP + + + K + Sbjct: 61 GFQVCETLRK--ELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|163849959|ref|YP_001638002.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163661564|gb|ABY28931.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 247 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IV+D+ L + + +G +G + + D++++D+ + GL Sbjct: 6 HVLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQMRAFLDADRVDLVVLDVMMPGDDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + PV+ +TA + + D + G + Y+ KP + + IK + Sbjct: 66 LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR 123 >gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 244 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGLE 63 + +V+D++ L + +E + L +G L R + + D++I+DI L G Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ S+ +PVI +TA + + D + G + Y++KP + + IK + Sbjct: 67 VCRSLRTQSQ---VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 >gi|115360939|ref|YP_778076.1| two component AraC family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286267|gb|ABI91742.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria AMMD] Length = 277 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 58/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++L +++ ++ +G++A A+ PD+I+MD+++ + G Sbjct: 20 AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + Q IP+I +TA A D + G YI KP + I+ ++ Sbjct: 80 AACRLLASTPSTQNIPIIILTAAADLDDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139 Query: 123 A 123 A Sbjct: 140 A 140 >gi|330812352|ref|YP_004356814.1| response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380460|gb|AEA71810.1| putative response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 121 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ M ++E G+ L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARVLIVDDSPTEMYKLTGMLEKHGHQVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+Q+ +D + IPVI +T D+ + G + Y++KP+ + T+ K + Sbjct: 61 FQATRQLTKDPDTGHIPVIIITTKDQDTDKVWGTRQGAKDYLTKPVDEETLIATLNKVL 119 >gi|317477648|ref|ZP_07936861.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316906188|gb|EFV27929.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 630 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ D+ +GY NG EAL + R+ PD++I DI + E++G Sbjct: 462 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMTGD 520 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ IK + E+ IPV+ +TA + + K G +AYI KP S+ I T+K + Sbjct: 521 ELCSIIKGNLEMSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILAN 580 Query: 122 EA 123 A Sbjct: 581 RA 582 >gi|294636584|ref|ZP_06714945.1| putative diguanylate cyclase/response regulator [Edwardsiella tarda ATCC 23685] gi|291090171|gb|EFE22732.1| putative diguanylate cyclase/response regulator [Edwardsiella tarda ATCC 23685] Length = 318 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D LN++L + + NG +AL + PD++++DI++ +++GLE Sbjct: 20 RLLIVDDEPLNIQLL-YQLFADDHTVFMATNGQQALNICMNQHPDLVLLDIEMPDMNGLE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + Q+IPVI +TA + E + G +ISKPI+ +I + ++ Sbjct: 79 VCQRLKAAPQTQDIPVIFITAHIDENSETAGLRAGAVDFISKPINHNIVRARVNTHM 135 >gi|239989346|ref|ZP_04710010.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 256 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ + + +E GY +G+ LE R D++I+D+ L + G+ + Sbjct: 27 VLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAHDLLILDVMLPALDGIGL 86 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+E+S +PV+ ++A D + G + Y+ KP+ ++ + I+ + A Sbjct: 87 CHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRRA 142 >gi|227327463|ref|ZP_03831487.1| two-component system regulatory protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+I+ED+ + + GY +G L +A KPD+I++D+ L +++G Sbjct: 4 KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQRGLHMALTSKPDLILLDVMLPKMNGS 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ +++ S IPVI VTA + + G + Y+ KP + + ++ + Sbjct: 64 EVLSALRQRS---NIPVIMVTAIGDDPERIGALRYGADDYVVKPYNPQEVVARVQAVLRR 120 >gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 223 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R + + Y NG + L LA D++++D+ L E+ G E Sbjct: 2 RILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PV+ +TA D+ + G + Y+ KP + + F+ I+ + A Sbjct: 62 VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118 >gi|78060490|ref|YP_367065.1| two component AraC family transcriptional regulator [Burkholderia sp. 383] gi|77965040|gb|ABB06421.1| two component transcriptional regulator, AraC family [Burkholderia sp. 383] Length = 278 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 57/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++L +++ + +G++A A+ PD+I+MD+++ + G Sbjct: 20 AHILVVDDRPNDLRLLTEILRAARCRISVAFDGLQAYHRAQAIAPDLILMDVRMPRMDGF 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + Q IPVI +TA D + G YI KP + + I+ ++ Sbjct: 80 AACRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIIKPFEPTEVLARIRNHLKR 139 Query: 123 A 123 A Sbjct: 140 A 140 >gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus kaustophilus HTA426] gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus kaustophilus HTA426] Length = 232 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+E + +E Y +G+EAL++ D+I++DI ++ I G+ Sbjct: 4 KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMIND-DFDLIVLDIMMEGIDGM 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I++ + P++ V+A ++ D+ + G + YI+KP SL I ++ Sbjct: 63 ELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRR 119 >gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 271 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + G+ +G A++ AR +PD +++D+ L ++ GL Sbjct: 46 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 105 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ D L ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 106 VLGRLRRD--LPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 163 >gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + L + E G+ +G + L A+ + D I++DI L I GL Sbjct: 2 RILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPVIDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K++++ + PVI +TA D+ G + Y++KP S + K I Sbjct: 62 ILKKLRKQNNT--TPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRR 118 >gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 225 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +L + ++ G ++ +G++AL K D+++MDI + + G Sbjct: 1 MTKLLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEKIDMVVMDIMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ + ++P++ +TA + + G + Y+ KP + + +K + Sbjct: 61 WALCEEIRSFNT--DLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D+ +L ++ GY + +G EAL + ++I+D+ + ++GL Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNGL 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K +++DS IP++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 62 EVVKVVRKDSR---IPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118 Query: 123 A 123 A Sbjct: 119 A 119 >gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 231 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D++ ++ + G+ ++ +G EALEL +++ +++I+D+ + + G Sbjct: 1 MPTILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEVNLMIVDVMMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 61 IRTTLKVRE---TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|256059197|ref|ZP_05449403.1| response regulator PleD [Brucella neotomae 5K33] gi|261323146|ref|ZP_05962343.1| response regulator receiver modulated diguanylate cyclase [Brucella neotomae 5K33] gi|261299126|gb|EEY02623.1| response regulator receiver modulated diguanylate cyclase [Brucella neotomae 5K33] Length = 461 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPRTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+++EL R ++ Y + AL A + D II+ L Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278 >gi|298530375|ref|ZP_07017777.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298509749|gb|EFI33653.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 301 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 +++IV+D ++N+++ DL++ Y + R+G +AL+LA Q PD+I++DI + +SG Sbjct: 6 ARILIVDDEKINLRVLADLLKDK-YTIMLARSGEQALKLAHQEPRPDLILLDIAMPGMSG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K++K D IPVI +TA + EE+ K G YI+KPIS I ++ Y+ Sbjct: 65 FEVIKKLKHDDATNHIPVIFITALDSREQEEKGLKLGAVDYITKPISPPIVKIRVRNYL 123 >gi|171315888|ref|ZP_02905118.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria MEX-5] gi|171098984|gb|EDT43772.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria MEX-5] Length = 277 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++L +++ ++ +G++A A+ PD+I+MD+++ + G Sbjct: 20 AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + Q IPVI +TA A D + G YI KP + I+ ++ Sbjct: 80 AACRLLASTPATQNIPVIILTAAADLEDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139 Query: 123 A 123 A Sbjct: 140 A 140 >gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + R + G+ +G AL A D++++D+ L + GL+ Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PV+ VTA D + G + Y+ KP L ++ I Sbjct: 62 VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 >gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++M+VED + L++ GY +G A+ + D+I++D+ L + G Sbjct: 1 MTRIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGTDLILLDLMLPGLPG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+ S +P+I +TA + D + G + Y++KP S + I+ + Sbjct: 61 TEVCREIRTRSA---VPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|148977340|ref|ZP_01813954.1| putative two-component response regulator [Vibrionales bacterium SWAT-3] gi|145963453|gb|EDK28717.1| putative two-component response regulator [Vibrionales bacterium SWAT-3] Length = 220 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN D +E G+ NG A++L + + D+II+DI + ++GL Sbjct: 2 RILVAEDNHATAANLGDYLELFGHDIDFAYNGQAAIQLLGEARFDLIILDIMMPVMNGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 I+ +IP+I +TA GD+ K G + Y+ KP L ++ Sbjct: 62 ACSAIRA-GRHADIPIIFLTARDTLGDKLAGFKAGADDYLVKPFELQELHARVEAL 116 >gi|94967535|ref|YP_589583.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] gi|94549585|gb|ABF39509.1| response regulator receiver modulated metal dependent phosphohydrolase [Candidatus Koribacter versatilis Ellin345] Length = 427 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 62/120 (51%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ L ++L+ GY+ + EA PD+I++D+Q+ +G Sbjct: 110 SQHILVVDDSPELAMLMQELLAAHGYLVQLAYSAAEAEREIAGRPPDLILLDVQMPGKNG 169 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++K++ E + IP++ +T + + R + G + +++KPI +K + Sbjct: 170 YDLCRELKDNPETRLIPIVMITGLTDRENRIRGIESGADEFLNKPIFPEELFARVKSLLR 229 >gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|329961691|ref|ZP_08299737.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328531563|gb|EGF58400.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1338 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++IVEDN ++ ++ Y L +G E L L P++++ D+ + ++SG Sbjct: 1080 AKILIVEDNASIREMLANIFHPF-YEVLTAPDGEEGLALVHSEMPNIVVSDVVMPKMSGT 1138 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ KQIK D IPV+ +TA + G + YI+KP + ++ + + Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLV 1196 >gi|317493397|ref|ZP_07951818.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918340|gb|EFV39678.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 236 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 ML--KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+ +++++D+ L + +G+ + +G + ++ +Q D+II+D+ + Sbjct: 1 MMLPYSLLLIDDDAEIRSLLTEYFTRAGFSVIALPDGEKLMQTLQQQSVDLIILDVMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + + ++ +P+I +TA + + D+ + G + Y++KP S + +K Sbjct: 61 MDGFTLCRMVR---NTSSVPIIMLTAASDETDKVIGLELGADDYLAKPFSARELLARVKA 117 Query: 119 YIGE 122 + Sbjct: 118 LLRR 121 >gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED+ ++ + GY +G E L +H D++++D+ + ++ Sbjct: 1 MPQHILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +QI+ S +P++ ++A D+ G + Y++KP S+ I+ I Sbjct: 61 GMEVIRQIRTRSA---VPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|260173428|ref|ZP_05759840.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 1290 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y+ NG EAL + ++KP+++I DI + E+ G Sbjct: 1025 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1083 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ + IK + E IPVI +TA + D + G + Y+ KP ++ I + + Sbjct: 1084 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1143 Query: 122 EA 123 A Sbjct: 1144 RA 1145 >gi|253700815|ref|YP_003022004.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251775665|gb|ACT18246.1| response regulator receiver sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 452 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ KL L+ GY RNG +ALE + +PD++I DI + E+ G E+ Sbjct: 14 ILIVDDSPTQAKLLEQLLAGEGYRVAVARNGSDALEQINERRPDMVISDILMPEMDGFEL 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E ++E P++ +T D + G ++SKP S + + I+ + Sbjct: 74 CRRVREMESIKETPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRAIL 129 >gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] Length = 225 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++++D +++ + +E GY +Q +G+EAL+ + PD++I+D+ L +IS Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+E+SE +P+I +TA + + G + YI+KP S + + + Sbjct: 61 GENVCERIREESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|90994534|ref|YP_537024.1| hypothetical chloroplast protein 29 [Porphyra yezoensis] gi|122244619|sp|Q1XDE4|YCF29_PORYE RecName: Full=Probable transcriptional regulator ycf29 gi|90819098|dbj|BAE92467.1| unnamed protein product [Porphyra yezoensis] Length = 222 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 66/122 (54%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+M+VE++ + K ++ + G+ NG+EAL LA Q+ D+II DI + ++ Sbjct: 1 MSYKLMLVENDIVLSKAIQEYLIDQGFNVYIANNGLEALNLAYQYNFDLIISDIMMPLVN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++K++ L +IPVI +TA M D + GC Y+SKP + + I I Sbjct: 61 GYELLAKLKKNKALSKIPVIFLTAKGMTKDRIKGYDMGCYGYLSKPFDPNELLSIINNLI 120 Query: 121 GE 122 Sbjct: 121 AR 122 >gi|78777953|ref|YP_394268.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78498493|gb|ABB45033.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 220 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++++ED+ ++ + ++ G+ + + +A+ + + D++I+D+ L + G Sbjct: 1 MKKILMIEDDLELAEILTEYLQQFGFDVVTEDDPFKAVSILKLEPFDLVILDLTLPGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I+E Q+IP+I +A + D+ + + G + YI KP I + Sbjct: 61 LEVCEAIRER---QDIPIIISSARSDVTDKVKALELGADDYIPKPYDPRELEARIHSVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|42526008|ref|NP_971106.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] gi|41816058|gb|AAS10987.1| sensor histidine kinase/response regulator [Treponema denticola ATCC 35405] Length = 369 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 21/139 (15%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+IVED+E R +E GY L +G ALEL PD++++DI L +++G Sbjct: 1 MNKVLIVEDDEGIADFLRFELEHEGYSVLHAGDGRTALELFESDTPDILLLDIMLPQLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-------------- 107 LE+ ++I++ +PVI +TA D+ G + Y++KP Sbjct: 61 LEVLRRIRK---TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIGASNLDERLPVT 117 Query: 108 ----SLSIFMETIKKYIGE 122 +T + Sbjct: 118 DKGDDFDELAKTFNNLLSR 136 >gi|27376076|ref|NP_767605.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349215|dbj|BAC46230.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 306 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ ++L D ++ +G + +G A+ + Q PD++++D + I G E Sbjct: 12 LVVDDSPETLRLLTDALDGAGMTVMVALDGAAAMRIVEQITPDIVLLDAVMPGIDGFETC 71 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K D+ L +PVI +T A R G Y++KPI + + I+ ++G A Sbjct: 72 RRLKRDAGLANVPVIFMTGLAETEHIVRGLDAGGVDYVTKPIVIEEMLARIRVHLGNA 129 >gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 230 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D L + +G+ +G + + + +PD+II+D+ L +++G Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPDMNGFG 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +TK+++ P++ +TA D+ G + Y++KP SL + IK + Sbjct: 66 VTKRLRASGYTS--PILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRR 122 >gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1314 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK---PDVIIMDIQLQEIS 60 V++VED++LNM++ + ++E G + ++G EAL L Q + D I+MD+Q+ + Sbjct: 979 HVLLVEDHDLNMEVAKAILERVGIRVITAQHGGEALALLEQTEGAAFDAILMDLQMPVMD 1038 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E T+ I+ + + P+IA+TA A D ER + G +I+KPI+ + ++++I Sbjct: 1039 GFETTRVIRSKTAWAQPPIIALTANAFSQDRERALQVGMNDHITKPIAPGLLYAALERWI 1098 Query: 121 GE 122 Sbjct: 1099 DR 1100 >gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++ED + + GY +G E A D+II+D+ L E+S Sbjct: 1 MKTRILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++++S ++P+I +TA D+ G + Y++K ++ + I+ + Sbjct: 61 GIEVCRRVRKES---DVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVIL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 223 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDN + K+ + GY + NG EAL + +II DI + + G Sbjct: 1 MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ S +P+I +TA + D + G + Y+ KP+ L IK + Sbjct: 61 YQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|196234682|ref|ZP_03133496.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] gi|196221255|gb|EDY15811.1| response regulator receiver protein [Chthoniobacter flavus Ellin428] Length = 121 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 74/119 (62%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK+++VEDNE+N + +E GY + +G + + A++H+PD+I+MD+ L + G Sbjct: 1 MKKLLLVEDNEMNRDMLSRRLERRGYQVVIAVDGEQGITAAKEHRPDLILMDMSLPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+++K++ + Q IPV+A+TA AM G+ ++ GC Y +KP+ + I+ + Sbjct: 61 WESTRRLKQEPDTQAIPVLALTAHAMAGERDKALAAGCSDYDTKPVDFVRLLGKIESLL 119 >gi|157374787|ref|YP_001473387.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157317161|gb|ABV36259.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1374 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 74/120 (61%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEIS 60 KK+++V+D+ N+ ++E G + R+G+E++E QH PD +I+MDI + ++ Sbjct: 1255 KKILLVDDDMRNVFALSSILEDKGIEIVVGRDGLESIEKLDQH-PDIALILMDIMMPKMD 1313 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I++ + +++P+IA+TA AMKGD + + G Y++KP+ + ++ ++ Sbjct: 1314 GYDAMKEIRKKRKYKKLPIIALTAKAMKGDRSKCIEAGASDYLAKPVDTDKLLSMLRVWL 1373 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I+ED+ + RD G+ + G L A +KP II+DI L I G Sbjct: 987 QTLLIIEDDRAFAGVMRDFGRERGFKCIVAETGETGLHFADYYKPSAIILDIGLPGIDGW 1046 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET---IKKY 119 + +++KE+SEL+ IPV ++A D + G Y++KP+ L+ +T I++ Sbjct: 1047 TVMERLKENSELRHIPVHFMSASDNNLD---AMRMGAIGYLTKPVDLNKLNKTFGDIEEI 1103 Query: 120 IGEA 123 I ++ Sbjct: 1104 IAKS 1107 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED+E+ + R L+ + G +AL+ ++ D +I+D+ L+++SG Sbjct: 1109 KKLLIVEDDEIQRESIRQLLGEGDIHIVGVATGKQALQELETNRYDCMILDLGLEDLSGF 1168 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFME 114 E+ +I+ +P+I T + DEE+ E+ I K + S ++ Sbjct: 1169 ELLDKIRRSDSAARVPIIVYTGRELTVDEEKELSRYAESIIIKGVKSPERLLD 1221 >gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 239 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED+ L R + G +G AL A ++ VI++D+ L ++ Sbjct: 1 MTDRILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVMLPNMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I +QI+ D +I +I +T+ + D + G + Y++KP S+ ++ + Sbjct: 61 GLDICRQIR-DKRPMQI-IIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQL 118 Query: 121 GE 122 + Sbjct: 119 RK 120 >gi|323699566|ref|ZP_08111478.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459498|gb|EGB15363.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 953 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 5/117 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISGL 62 +++ +DN +N K + + G+ + NG+EALE+ R DV++MD+Q+ E+SGL Sbjct: 697 ILLADDNPMNRKYLQHFLTMFGHTVVTAENGLEALEVLRDRGRTVDVVLMDVQMPEMSGL 756 Query: 63 EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E T+ I+E + IP+IA+TA+AMKGD ER+ + G + Y+SKP+ + E I Sbjct: 757 EATRAIRESDGRQYDRRIPIIALTAYAMKGDRERMLEAGMDDYVSKPVDMHALSEAI 813 >gi|238790319|ref|ZP_04634092.1| Response regulator receiver modulated diguanylate cyclase [Yersinia frederiksenii ATCC 33641] gi|238721583|gb|EEQ13250.1| Response regulator receiver modulated diguanylate cyclase [Yersinia frederiksenii ATCC 33641] Length = 312 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D+ +N+++ + + Y +G +AL++ PD+I++DI++ E++G E Sbjct: 12 KILIVDDHPINIQMLYQVFSSD-YHVCMATSGKQALDVCVSQHPDLILLDIEMPEMNGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K E Q+IPVI VTA + E R G +ISKPI+ + +K ++ Sbjct: 71 VCTRLKALPETQDIPVIFVTAHIDEETETRCFSEGAVDFISKPINRNTVRARVKTHL 127 >gi|159897122|ref|YP_001543369.1| response regulator receiver sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890161|gb|ABX03241.1| response regulator receiver sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 397 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 69/120 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +V+ +EDN N +L R ++ T GY + +G E + A+ +PD+I+MDI L ++G Sbjct: 4 STRVLYIEDNHDNQRLVRRVLATRGYQIIIANDGNEGWKSAQTDRPDLILMDINLPGLNG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T + K +L +P++A+TA GD ER GC+ YISKPI + + YIG Sbjct: 64 YELTTKFKATPQLASVPIVALTANTTPGDRERALAAGCDGYISKPIDPRALPDLVASYIG 123 >gi|15838927|ref|NP_299615.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|9107507|gb|AAF85135.1|AE004044_6 two-component system, regulatory protein [Xylella fastidiosa 9a5c] Length = 241 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVEDN ++ + +E G+ +G++ LA ++ DV+++D+ L + G+E+ Sbjct: 15 VLIVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAVENSYDVVVLDLMLPRLDGIEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q+++D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 75 CRQLRKDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 131 >gi|83312977|ref|YP_423241.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947818|dbj|BAE52682.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1177 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEI 64 ++V+D+ N ++ G L ++G +AL + D+++MDI + + G + Sbjct: 1053 LLVDDDMRNAFALSKVLRARGLKVLIAQDGAKALSQLQSRADVDLVLMDIMMPGMDGYQT 1112 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++D +P+IA+TA AM GD +R G + Y++KP+ + + + I Sbjct: 1113 MGEIRKDPRFAHLPIIALTAKAMAGDRDRCLAAGADDYLTKPVDVERLRQVMALLIRR 1170 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 3/107 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED+ + ++ D+ + G+ +G LELAR +P +++DI L ++SG E+ Sbjct: 785 LVIEDDPIFRRVVCDMAQAKGFATATAGDGKTGLELARLRRPSGVVLDIGLPDMSGWEVI 844 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + +K E ++IPV ++A G R + G +++KP+S Sbjct: 845 EALKLQPETRDIPVHVMSAGDEPG---RAARLGTVGHLTKPVSREQI 888 Score = 44.7 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 V+ +E + + + G ALE D +++D+ L +++G E + Sbjct: 910 VDGDEASRATIGETLVGLDLDITVAETGQVALEHLAAGPFDCMVLDLALSDMAGGEFLE- 968 Query: 68 IKEDSELQEI-PVIAVTAFAMKGDE 91 + + + PVI ++ + D+ Sbjct: 969 -RAERIGSGLPPVIVYSSQELSQDQ 992 >gi|117921855|ref|YP_871047.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. ANA-3] gi|117614187|gb|ABK49641.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. ANA-3] Length = 338 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ Y +G AL L + PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVAKTLPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K++ IPVI VTA + DE + + G YI+KP+S + ++ ++ Sbjct: 63 EVCKLLKQEPLTCHIPVIFVTALSEVADETQGFELGAVDYITKPVSAPVVKARVRTHL 120 >gi|167037177|ref|YP_001664755.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856011|gb|ABY94419.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 318 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 71/117 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+DN+L K+ +D++E +GY L+ ++G EAL++ R PD++I+DI + ++G Sbjct: 12 RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIYRNKLPDMVILDIVMPGMNGF 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ + ++++ E +P+I +T+ ++ + + G + Y+ KP + + + Sbjct: 72 DLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNL 128 >gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1202 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +NMK+ ++ GY A NG EA++ DV++MD+Q+ ++ GLE Sbjct: 1079 KILLAEDNPVNMKVALLMLNKLGYKADVVSNGEEAVQALSHKHYDVVLMDVQMPKMDGLE 1138 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY-IGE 122 T+ I + + ++A+TA+A++GD +R G + YISKP+ + ++ IG Sbjct: 1139 ATRAILDMDLVDRPRILAMTAYALEGDRKRCLDAGMDGYISKPVQIDELRAALQALNIGR 1198 >gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii L2-6] Length = 978 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59 + +++VEDNELN ++ ++++ G+ NG A+E P D+++MD+Q+ + Sbjct: 856 RHILLVEDNELNREIAQEILREYGFRVDTAENGEVAVEKVSTAAPGSYDLVLMDVQMPVM 915 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G T++I+ D ++P++A+TA A D + G ++SKPI + ++ ++ Sbjct: 916 DGYTATRKIRALDDPARAKLPILAMTANAFDEDRRNALESGMNGFLSKPIVIGDLVQELR 975 Query: 118 KYI 120 K + Sbjct: 976 KIL 978 Score = 96.7 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 K ++V+D+ ++ G A T +G EA+ ARQ I+D +L + Sbjct: 715 KALVVDDDFNTCDSVTKMLVKVGMRAEWTLSGKEAVLRARQSIEMSDAYHAYIIDWRLPD 774 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+E+T+QI ++ + P+I +TA+ E + G A+ KP+ +S ET+ Sbjct: 775 MNGIEVTRQICSLND--DTPIIILTAYDWSDIEVEAKAAGVTAFCEKPMFMSDLRETLMS 832 Query: 119 YIGE 122 +G+ Sbjct: 833 ALGQ 836 >gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E L +D +E SG+ G L A + + D+II+D+ L E+ G Sbjct: 1 MSRILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLMLPEVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I +Q++E+ + P+I V+A D+ R G + Y++KP S S + +K ++ Sbjct: 61 FDICRQVREE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHME 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|258591511|emb|CBE67812.1| Response regulator receiver protein [NC10 bacterium 'Dutch sediment'] Length = 397 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 57/115 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D+ +L +++ GY +Q +G +A +L + +I D + + GLE Sbjct: 2 RILIVDDDVDMRRLLLHTLQSWGYDVVQAIDGAQAWDLLQNEPFSFVITDWIMPNLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++I+ + I +I +TA K + + + G + ++ KP + I+ Sbjct: 62 LCRRIRGARFTRYIYIILLTAKHSKEELIKGMEAGADDFLIKPFNAGELKVRIRA 116 >gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] Length = 237 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L +L + +GY G + L Q D +I+D+ L + GL Sbjct: 4 KRILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLMLPGVDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I ++++ + P+I ++A + + + G + Y++KP S+ + +K Sbjct: 64 DICRRVRAM--TRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRR 121 >gi|227484748|ref|ZP_03915064.1| response regulator VanRG [Anaerococcus lactolyticus ATCC 51172] gi|325846324|ref|ZP_08169314.1| response regulator receiver domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|227237270|gb|EEI87285.1| response regulator VanRG [Anaerococcus lactolyticus ATCC 51172] gi|325481588|gb|EGC84627.1| response regulator receiver domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 227 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED+E + L +E YI + EA+ ++ + D+ I+DI L + Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E P+I +T+ + + + G + Y++KP + +K + Sbjct: 61 GYYLCKKIRESFNY---PIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016] gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 233 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++D++ L R + A +G + L + +++ +I++D+ + + Sbjct: 3 MSYKILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMD 62 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I++ +P++ +T+ + R + G + Y++KP + + + I Sbjct: 63 GFQTMEKIRQ---TSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLI 119 Query: 121 GE 122 Sbjct: 120 RR 121 >gi|218710599|ref|YP_002418220.1| putative response regulator [Vibrio splendidus LGP32] gi|218323618|emb|CAV19887.1| putative response regulator [Vibrio splendidus LGP32] Length = 244 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++V+D++ + + +E S + + G E + PD+II+DI L Sbjct: 9 MTNKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGD 68 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GL + ++++ S+ +P+I +TA D + G + YI+K + + IK Sbjct: 69 DGLTLCQKLRLQSQ---VPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKAL 125 Query: 120 IGEA 123 + + Sbjct: 126 LRRS 129 >gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697] Length = 1334 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE L L Y + ++G E E ++ +PD+++ DI + ++SG+E Sbjct: 1085 KIIIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK + E IPVI +TA + + K G + Y++KP ++ + Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200 >gi|119488888|ref|ZP_01621850.1| adenylate cyclase [Lyngbya sp. PCC 8106] gi|119455049|gb|EAW36191.1| adenylate cyclase [Lyngbya sp. PCC 8106] Length = 657 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D +N+ L ++ T GY +G+ AL + PD+I++DI + E+ G Sbjct: 11 KSILVVDDTPINLTLLTRMLTTQGYEVRVAPSGVLALRSVQMSPPDLILLDIMMPEMDGY 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +K+ +E +EIP+I ++A D+ + + G YI+KP L+ + I+ + Sbjct: 71 HFCRLLKDQAETREIPIIFLSALDDASDKVKAFEMGGVDYITKPFQLTEVLARIENH 127 >gi|157960458|ref|YP_001500492.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella pealeana ATCC 700345] gi|157845458|gb|ABV85957.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella pealeana ATCC 700345] Length = 339 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D N+ + ++ Y +G +AL LA + PD+I++D+ + ++G Sbjct: 4 ATVLVVDDTPENIDILVGILGGD-YKVKVAIDGPKALALASKSSPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K++K++ IPVI VTA DE + + G YI+KP+S + +K ++ Sbjct: 63 EVCKRLKQEPLTNHIPVIFVTALTEVADETQGFELGAVDYITKPVSAPVVKARVKTHL 120 >gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 247 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + G+ L NG EAL++ + + I+DI + + G+E+ Sbjct: 21 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 81 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 >gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1681 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 65/114 (57%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN+LN +L +L+ +G +G+EA+E Q D ++MD Q+ + G E Sbjct: 1345 VLLVEDNQLNQELAVELLHQAGVNVTVANHGLEAIERIEQQYFDCVLMDCQMPVLDGYEA 1404 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T++I+E E +P++A+TA AM GD E+ G I+KP+ + + + Sbjct: 1405 TRRIRELPEFANLPILAMTANAMSGDIEKALAVGMNDQITKPVHVKDLYTVMAR 1458 >gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568] gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC 43380] gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii ATCC 33641] gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC 29909] gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC 43969] gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582] gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC 43380] gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC 43969] gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii ATCC 33641] gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC 29909] gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582] gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia enterocolitica subsp. palearctica Y11] gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica W22703] Length = 239 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp. HGF5] gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp. HGF5] Length = 224 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IV+D KL D E +GY + +N EA++ Q PD++++DI + E +G Sbjct: 1 MHKILIVDDEADLRKLLTDYFEINGYFVMTAKNSREAMQKVEQG-PDLVLLDINMPEENG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI ++I+ P++ +TA D+ + G + YI KP S+ ++ ++ Sbjct: 60 LEICERIR---GFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 306 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 9/132 (6%) Query: 1 MLKK---------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII 51 M+ V++ +D+ + L D +E + L G +AL +A++ +PD+I+ Sbjct: 1 MMNTTSDLVRSEVVLVADDSPDALSLIHDTLEAANMDVLVALEGKQALTIAKRIRPDIIL 60 Query: 52 MDIQLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 +D + + G E K +K D L IPVI +T + D R + G Y++KPI + Sbjct: 61 LDAIMPTMDGFEACKALKADPNLSTIPVIFMTGLSDTDDIVRGLEAGGVDYLTKPIQPNE 120 Query: 112 FMETIKKYIGEA 123 + ++ ++ A Sbjct: 121 LIARMRVHLNNA 132 >gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1823 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH +++MDI + E+ G Sbjct: 1703 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1762 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + +++++ Sbjct: 1763 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIEAGASDYVTKPVDTDHLLTVMEQWM 1820 >gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905] gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905] Length = 230 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + K+ ++ SGY +G EALEL ++ D+II+D+ L ++ G+E Sbjct: 2 KLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +QI+ SE ++ ++ ++A + D+ G Y+ KP I+ + Sbjct: 62 VLEQIRVQSE--DVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRR 118 >gi|88860719|ref|ZP_01135356.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2] gi|88817314|gb|EAR27132.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2] Length = 227 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED ++ D + G+ +G +A+ + +PD +I+D+ L Sbjct: 1 MATKVLVVEDEVKIAQILVDFLTLDGFEVTTIHDGADAVLQIKNQQPDFVILDLMLPNKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I K++++ +P++ +TA + D + G + Y+ KP + +K + Sbjct: 61 GLTICKEVRQ---FSNVPILMLTARVDEIDRLMGLEFGADDYVCKPFLPREVVARVKTIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|119776626|ref|YP_929366.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119769126|gb|ABM01697.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 120 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 64/120 (53%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++ V+D+ ++ ++T+G+ + NG EAL+ A+ + D++I D+ + + G Sbjct: 1 MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALKAAQAGQYDLVISDVNMPVMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + ++ + P++ +T + ++ R G +I KP + + T++K +G Sbjct: 61 ITLIRNLRTLPAYKFTPLLMLTTESGGDKKQEGRAAGATGWIVKPFNPEQLLATVRKVLG 120 >gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891] gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891] Length = 886 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 +++IVEDN +N K+ L+ +GY NG AL+ + + D+I+MD + + G Sbjct: 766 RILIVEDNRVNQKVASLLLAKAGYQFDIADNGQIALDKFQSEEHYDLILMDCMMPVMDGF 825 Query: 63 EITKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I++ L + P+IA+TA + D +R + G +AY++KP+ + I Sbjct: 826 TATREIRQIETECGLTKTPIIALTASVLDDDIQRCFESGMDAYVAKPVKKEKLLHEIANV 885 >gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 214 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED++ +L + + T Y + +G+E ++ + D+I++D+ + ++G E+ K Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ S IP+I +TA + D+ + G + YI+KP S + M ++ + + Sbjct: 62 IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114 >gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC 35098] gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC 35098] Length = 223 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IVED + ++L + + GY+ +G EAL+LA D+II+DI L + G E Sbjct: 2 KVLIVEDEKKLLRLLEEGLNILGYVTDTASDGEEALDLAYVENYDIIILDINLPKKDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ + +E+ +I +TA + D R G Y++KP L ++ + Sbjct: 62 VLRDIRQFN--REVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSLLRR 118 >gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827] gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827] Length = 231 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED +L D ++ +GY + G E ++ RQ +PD+I++D+ L + GL I Sbjct: 11 VLVVEDEPKLGQLLYDYLQAAGYQPSILQRGDEVIDYVRQQQPDIILLDLMLPGMDGLTI 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ EIP+I VTA + D + G + YI KP S + +K + Sbjct: 71 CRELRK---FCEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRR 125 >gi|148652131|ref|YP_001279224.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571215|gb|ABQ93274.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 223 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D++ L ++ + G +G + L + D+I++DI + +I G Sbjct: 1 MTHILLGDDDKELTDLLQEYLTNHGIRCDCAYDGEQVLNKIKSQPYDLIVLDIMMPKIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + +Q+ L + PVI +TA + D + G + YI+KP + + I I Sbjct: 61 LNVLRQL---PTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 232 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED E L+ G+ + +G AL ++ D++++D+ L +SG Sbjct: 1 MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++ + +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKELR---LVSNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|117926505|ref|YP_867122.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610261|gb|ABK45716.1| amino acid-binding domain sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1251 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 71/118 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN LN ++ +E +G NG+ +E+A Q D++ MDIQ+ + GL Sbjct: 949 ARVLLVEDNALNQQVAVAFLEQAGMEVAVAENGLRCIEMAEQSHYDLVFMDIQMPVMDGL 1008 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+Q+++ S L ++P+IA+TA AM + E G + Y++KP+S + + ++I Sbjct: 1009 EATRQLRQRSALAKLPIIAMTAQAMPSERECSMVAGLDDYLTKPVSPEAIQQMLVRWI 1066 >gi|317152822|ref|YP_004120870.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316943073|gb|ADU62124.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 236 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++++D+ +L +E G+ T NG L AR ++ +II+D+ L + SG Sbjct: 1 MNKVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ DS +PVI +T + D + G + Y+SKP L + ++ + Sbjct: 61 FNVLSRLRGDSA---VPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 248 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ L + +GY G A+ A + +PD+I++D+ L +I G + Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 T+ ++ + PV+ +TA D G + Y++KP + + I+ + + Sbjct: 75 TRHLRAEGVY--TPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRS 131 >gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] Length = 232 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG E+LE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621] Length = 214 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED++ +L + + T Y + +G+E ++ + D+I++D+ + ++G E+ K Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ S IP+I +TA + D+ + G + YI+KP S + M ++ + + Sbjct: 62 IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114 >gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010] gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010] Length = 929 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDN N+ + + LI+ G NG AL + + + D+I MD Q+ + G Sbjct: 675 RKILLVEDNSTNIIVAKGLIQMYGPTVEVAENGELALNILSKQRFDLIFMDCQMPVMDGY 734 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+ I+ + IP+IA+TA AM+GD E G + YISKP+ + +KK+ Sbjct: 735 ECTRLIRSEEASVINHRIPIIALTANAMRGDREACLAAGMDDYISKPVDADTIHQMLKKW 794 Query: 120 IGE 122 + + Sbjct: 795 LAQ 797 >gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein [Desulfobacterium autotrophicum HRM2] gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein [Desulfobacterium autotrophicum HRM2] Length = 873 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I EDN +L +E Y + NG A + KPD++I DI + + G + Sbjct: 549 ILIAEDNVGIQELLAIALER--YTLFISSNGQAAWQAIDGIKPDLVISDIMMPGMDGFSL 606 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+ + + IPVI +T+ + D + + G + Y++KP +K + Sbjct: 607 LERIRTNGKTSTIPVIVITSLTEQDDRIKSLQLGADDYLTKPFHHLELQARVKNVL 662 >gi|154504471|ref|ZP_02041209.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149] gi|153795246|gb|EDN77666.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149] Length = 234 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ L +ET Y NG +A+ A KPD++++D+ L ++ G+E+ Sbjct: 6 ILAVEDDTAVRNLITTTLETQDYRFHTAANGAQAILEAASQKPDIMLLDLGLPDMDGVEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ +P+I ++A + D+ G + Y++KP S+ + ++ + Sbjct: 66 IKKIRS---WSNLPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVILRR 120 >gi|74317005|ref|YP_314745.1| multi-sensor hybrid histidine kinase [Thiobacillus denitrificans ATCC 25259] gi|74056500|gb|AAZ96940.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans ATCC 25259] Length = 846 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +N K+ + G +G EALE D+++MD Q+ E+ GLE Sbjct: 610 RILVVEDHPVNQKVLAHQLRAMGLQYTLAASGREALERLGSADFDLVLMDWQMPEMDGLE 669 Query: 64 ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ PV+A+TA A G E G Y+SKP + + + + +++ Sbjct: 670 ATRRIRQLPGRAGRTPVVALTANASVGFREACLAAGANDYLSKPYTEAALVALLMQWL 727 >gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +KK ++IV+D+E ++ L+ G++ + N A+ + + D+II+DI + Sbjct: 4 MKKNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEK-PVDLIILDIMMPG 62 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +G E+ +I++ + +P++ ++A D+E G + Y+ KP S S + IK Sbjct: 63 RNGFELCTEIRK---ITTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKA 119 Query: 119 YIGE 122 + Sbjct: 120 LLRR 123 >gi|229489226|ref|ZP_04383092.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis SK121] gi|229324730|gb|EEN90485.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis SK121] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D + + GY +G A+ Q D++++D+ + GL Sbjct: 4 RRVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVARCEQMDADLVVLDVMMPGFDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ ++ +PV+ +TA A + D G + Y+SKP S+ + + ++ + Sbjct: 64 EVCRRIQA---VRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRR 120 Query: 123 A 123 A Sbjct: 121 A 121 >gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG E+LE+ + + I+DI + ++ G+E+ Sbjct: 21 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 81 CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 >gi|162295952|gb|ABX83923.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|78355580|ref|YP_387029.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217985|gb|ABB37334.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 244 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN LN + ++ GY NG ALE + D ++MD+Q+ ++GLE Sbjct: 118 HILLVEDNTLNQEFISLFLQEGGYTVTAADNGTGALENLEKRSFDAVLMDVQMPGMNGLE 177 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK+I+ IPVIA+TA M GD E G Y+ KP++ + I++ + E Sbjct: 178 TTKRIRNSGRAWARIPVIALTANNMAGDREYYLASGMNGYVEKPVNKAQLFGEIERCLTE 237 Query: 123 A 123 A Sbjct: 238 A 238 >gi|114320304|ref|YP_741987.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226698|gb|ABI56497.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IV+D+ +L D + +G A +G D++I+D+ L Sbjct: 1 MQANILIVDDDPGLRELLVDYLGQNGLEARAVPDGTALWPALEAGPVDLLILDLMLPGDD 60 Query: 61 GLEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ Q++ D+ + +PVI +TA + D + G + Y+ KP + + I+ Sbjct: 61 GLELCGQLRAADAPWRTLPVIMLTARGEETDRIVGLELGADDYLPKPFNPRELLARIRGL 120 Query: 120 IGEA 123 + + Sbjct: 121 LRRS 124 >gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D E L + G+ +G AL + PD++++D+ L +I G Sbjct: 6 RVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPDIDGFA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + +++P + +TA D+ G + Y++KP +S + ++ + A Sbjct: 66 VCQRLR--NAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRA 123 >gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 624 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++L + + Y+ +G EL D+I++D+ L ++ G+ Sbjct: 2 RILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+++ E ++ ++ +TA K D+ G + Y+ KP I+ + Sbjct: 62 LCRQLRQ--EGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRR 118 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 56/114 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++M+VED+ + + + +ET G + + + PD++I+D ++ I+G+ Sbjct: 498 ARIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGI 557 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ + ++ D + +PV+ V E+I G + +SKPI S + I Sbjct: 558 ELCQVVRNDPCWKLLPVVFVVDNLSADIVEQIFAIGADDCVSKPIVSSTLIACI 611 Score = 36.6 bits (85), Expect = 1.3, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 22/130 (16%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ ++ ++ + E G N A + PDV+++D+ ++E L++ Sbjct: 356 LVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDIEE-DSLKLL 414 Query: 66 KQIKEDSE--------------LQEIPVIAVTAFAMKGD-------EERIRKGGCEAYIS 104 ++ + S +IPV+ T D + + G A++ Sbjct: 415 IELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRLRLEVARAGGRAFLQ 474 Query: 105 KPISLSIFME 114 K + + +E Sbjct: 475 KSMPPNEILE 484 >gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IV+D+ +K+ R E Y + G EA + R PD+I++DI + I Sbjct: 1 MQYKILIVDDDTELLKMLRSYFEIKKYEVITACCGAEAFDRIRPE-PDIILLDINMPGID 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ +QI++ P+I +TA + D G + YI KP SL I ++ Sbjct: 60 GLDVCRQIRDKVM---CPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELEARITAHL 116 Query: 121 GE 122 Sbjct: 117 KR 118 >gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 227 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED+ ++ ++ Y +G AL LA H+PDV+++D+ L ++ G Sbjct: 1 MTRVLVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASHQPDVVVLDLGLPDMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ K ++ +PV+ ++A ++ G + Y++KP S+ + ++ + Sbjct: 61 VDVIKALR---GWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas albilineans GPE PC73] gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas albilineans] Length = 227 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + ++ G+ ++G E L + R+ DV I+D+ L ++SG+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++ E ++ PV+ +TA + D+ K G + Y+ KP + + + + A Sbjct: 62 LIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119 >gi|269139260|ref|YP_003295961.1| response regulator receiver modulated diguanylate cyclase [Edwardsiella tarda EIB202] gi|267984921|gb|ACY84750.1| response regulator receiver modulated diguanylate cyclase [Edwardsiella tarda EIB202] gi|304559168|gb|ADM41832.1| Response regulator [Edwardsiella tarda FL6-60] Length = 319 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D +N+++ + + NG +AL + PD++++DI++ E++GLE Sbjct: 20 RLLIVDDEPINIQIL-YQLFADDHTVFMATNGQQALNICMNQHPDLVLLDIEMPEMNGLE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + Q+IPVI +TA + E + G +ISKPI+ +I + ++ Sbjct: 79 VCQRLKASPQTQDIPVIFITAHIDEAMETTGLRAGAVDFISKPINHNIVRARVNTHL 135 >gi|255035253|ref|YP_003085874.1| multi-sensor signal transduction histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948009|gb|ACT92709.1| multi-sensor signal transduction histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1118 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I +DN + + L+ + Y L NG+EALE+ R+H+P +++ D+ + E+ G+ + Sbjct: 625 VLIADDNADMRQHIQSLLGSE-YDTLTASNGVEALEIIRRHRPALVLSDVMMPEMDGIAL 683 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K +K D + + P+I +TA A + + G + YI KP S + + + Sbjct: 684 LKAVKNDPVIAQTPIILITARAGEESRIEGIEIGADDYIVKPFSSRELIVRAQAQMR 740 >gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 237 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 6/123 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +KK ++I+ED+ + R L+E Y + NG + LEL D++I+D+ + + Sbjct: 1 MKKESILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELLNAET-DLVILDVMMPGM 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG+ ++I++ + +PV+ +TA + + + G + Y+ KP S S + +K Sbjct: 60 SGIRTCEEIRK---VSNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKAL 116 Query: 120 IGE 122 + Sbjct: 117 LRR 119 >gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D+ +D +E SGY + +NG EAL L + P +++ DI++ +G E+ Sbjct: 5 ILIADDDPGIRLAVKDFLELSGYSVVTAKNGQEALSLLETYHPHLLVSDIKMPRTNGYEL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 Q+++ E + +PV+ +T + + R + GC+ Y+ KP + I+ + + Sbjct: 65 VAQVRQRPEFRLLPVVFLTEKSTTSERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123 >gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H] gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 241 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L +E + + R+ EA + ++++D+ L SGLE Sbjct: 8 HLLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLPGESGLE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +P+I +TA + + D + G + Y++KP + + I+ + Sbjct: 68 VARWLRSQD---NVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRR 123 >gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 243 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IV+D+ L + G A+ +G + + D++++D+ L GL Sbjct: 7 RILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGAAMKKALTESSFDLVVLDLMLPGEDGLT 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ +S +IPVI +TA D + G + Y++KP + I+ + A Sbjct: 67 LCRSLRGES---DIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRRA 123 >gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium atrosepticum SCRI1043] gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 242 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED +L D ++ + Y NG + +E RQH P +I++D+ L Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHSPSLILLDLMLPGCD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I++ +P+I VTA + D + G + YI KP S + ++ + Sbjct: 69 GLTLCRTIRQ---FSNVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IVED+E +L RD ++ +GY A +G +A + A +I+D+ L +G Sbjct: 1 MKKILIVEDDENIAELERDYLKLNGYRADIEPDGQKACQKALGGGYAALIIDLMLPGKNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I + ++ QE+P+I V+A A D+ R G + Y++KP S + + ++ +I Sbjct: 61 FDIIRDVRS---TQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ VED + L++ Y +G L+ A D++++DI L +I G+ Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K +++ + P+I +TA + D+ G + Y++KP + + I+ Sbjct: 62 LLKTLRKQNI--RTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRR 118 >gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] Length = 224 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED E + ++ GY +G + LE A + D+I++D+ L ++G Sbjct: 1 MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ + P+I +TA D G + Y+ KP ++ + I+ Sbjct: 61 IEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator [Shewanella loihica PV-4] gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 238 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + +E +GY RNG++ A D+II+D+ L +++G + Sbjct: 15 RILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGWQ 74 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+ ++ +IPV+ +TA D+ + G + Y+ KP + + + +K + Sbjct: 75 ILEKIRLNN--SDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRR 131 >gi|300868652|ref|ZP_07113264.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333346|emb|CBN58456.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 484 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 1 MLK-K--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M+ K +++V+D N++L ++ GY R+G +AL +A+ D+I++DI + Sbjct: 6 MMPEKADILVVDDIPENLRLLAGILADRGYRIRPARDGFQALSIAQNIPIDLILLDIMMP 65 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ISG E+ +++K D ++IPVI ++A D+ + G YI+KP + ++ Sbjct: 66 GISGYEVCQKLKADEVTRDIPVIFISAINEVLDKVKAFAVGGVDYITKPFQAEEVLARVE 125 Query: 118 K 118 Sbjct: 126 T 126 >gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ + G+ ++ +G EALE ++ D++I+D+ + + G Sbjct: 10 MQTILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGNQVDLLIVDVMMPGLDG 69 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E+S IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 70 IRTTLKVRENS---SIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLR 126 Query: 122 E 122 Sbjct: 127 R 127 >gi|224372441|ref|YP_002606813.1| DNA-binding response regulator [Nautilia profundicola AmH] gi|223589062|gb|ACM92798.1| DNA-binding response regulator [Nautilia profundicola AmH] Length = 219 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED+ + ++ +E +G+ ++ +G AL A + D+I++D++L ++ Sbjct: 1 MKRKILIVEDDVSLNETVKEFLELNGFESVSVYDGDSALSRAYEESFDIILLDVKLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ K+I++ + P+I +T+ + D E+ G + YI KP SL I + Sbjct: 61 GFDVAKEIRK---FSDTPIIFITSLDSEKDIEKGFLSGGDDYIRKPFSLKELKLRIDAIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 966 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED+ +N ++ ++ GY+A +G L+ D+I+MD Q+ + G E Sbjct: 713 KILLAEDDLVNQEVVLTQLQQLGYVADAVSDGEAVLQHLETQHYDLILMDCQMPILDGYE 772 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ Q P +IA+TA M D +R + G + YI+KPI L + I +++ Sbjct: 773 TTARIRGSQNSQRPPIIIALTASVMPSDRDRCLQVGMDDYITKPIDLQALVNVINRWV 830 Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEIS 60 ++VE++ L + + G AL+ ++I+MD++L + Sbjct: 545 LVVENSSLVRHSVSCITQPWGIQVETADTSKIALDKWHHQQAKGSPYNLILMDLELLDRH 604 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ Q+ + S +I +++ + + E++ G Y+ KPI+ + + K + Sbjct: 605 GAKLLGQLYKTSSDSPTQLILMSSISQRNRAEQVLNLGDFVYLVKPIAPLRLLRSFAKAL 664 >gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 895 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D M+ R + Y + R+G EALE+A + + +I++D + ++ G+E Sbjct: 511 ILIADDEPEMMRFLRSQLSGR-YRVDEARDGAEALEIASKRRHHLILLDFMMPQVDGIEA 569 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++++E + +P+I +TA A + + + G +++KP S + + + Sbjct: 570 TRRLREMPSHRGVPIIILTARADEEVKFQALDAGATDFLTKPFSSTELLARCRNL 624 >gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii TW07627] gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591] gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii TW07627] gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704] gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704] Length = 233 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++ +D++ ++ + GY L+ +G EAL++ + K D++++D+ + ++ G Sbjct: 3 MSKILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEKIDLLVIDVMMPKLDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E + +P+I ++A + D+ G + Y++KP + + +K + Sbjct: 63 IRATLKIREAN---NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|297584935|ref|YP_003700715.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143392|gb|ADI00150.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 64/124 (51%), Gaps = 4/124 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M +++++V+D L ++ ++ GY + N EA + +PD+II+DI L + Sbjct: 1 MNERILVVDDEMDLRVLLKEALKQEGYTEVVTAANLSEAWDQFILIEPDLIILDIMLPDG 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +GL+ +I+ S +P++ ++A + + D+ G + Y++KP S + +K Sbjct: 61 NGLDFCAKIRGHS---TVPILFLSAKSDEVDKLLALSLGGDDYVTKPFSPKEVVYRVKSQ 117 Query: 120 IGEA 123 + A Sbjct: 118 LRRA 121 >gi|16329397|ref|NP_440125.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] gi|1651878|dbj|BAA16805.1| regulatory components of sensory transduction system [Synechocystis sp. PCC 6803] Length = 452 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 66/113 (58%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L DL+ GY +G AL + +PD+I++DI++ ++ G ++ Sbjct: 11 ILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQVKRPDLILLDIKMPDMDGYQV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + IK++ ELQ+IP+I ++A D+ + + G YI+KP + + I+ Sbjct: 71 CEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIE 123 >gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + +GY+ + +G E L D +++DI L ++ G+ Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + + + +PV+ +TA D+ + G + Y++KP L + I+ + + Sbjct: 62 VLEAWRRNG--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119 >gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + +L +E GY + +G++ALE+ R D++I+DI L +++G Sbjct: 1 MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K I+ DS ++PV+ +TA + G + Y+SKP L I+ + Sbjct: 61 LDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20] gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K+++V+D+ +L ++ GY + +G EA+ + PD ++I+D+ + ++G Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTN-PDIGLMILDVMMPNMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K +++DS +P++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 61 LEVVKIVRKDSR---VPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 242 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D E L + G+ +G AL A PD++++D+ L +I G Sbjct: 19 RVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPDIDGFA 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + +P + +TA D+ G + Y++KP ++S + ++ + A Sbjct: 79 VCERLRRSGQG--VPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRA 136 >gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71] gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227] Length = 253 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 >gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQE 58 M ++++VED + L+E G++ +G+ A L + D+ ++D L + Sbjct: 1 MPLRILLVEDEPDLAEALVALLEQQGHVVDHCSDGLSAWTLLSGDLARYDLALVDWMLPQ 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +SG+E+ ++++ +PV+ +TA D G + Y+SKP ++ + ++ Sbjct: 61 LSGVELCRRLRAAGFT--VPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRA 118 Query: 119 YIGE 122 Sbjct: 119 LQRR 122 >gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+E +L ++ G I R G E L A +H DV+++D+ L GLE+ Sbjct: 15 VLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGLEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ S ++P+I VTA + D + G + Y+ KP S + I+ + A Sbjct: 75 CRELRTRS---DVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRA 130 >gi|284053978|ref|ZP_06384188.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 466 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED+ +N ++ ++ GY A +G L+ D+I+MD Q+ + G E Sbjct: 213 KILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQHLETQHYDLILMDCQMPILDGYE 272 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ Q P +IA+TA M D +R + G + YI+KPI L + I +++ Sbjct: 273 TTARIRRRQNSQRPPIIIALTASVMPSDRDRCIEAGMDDYITKPIDLQALVNLINRWV 330 Score = 67.8 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 K+++V+ + L + + + G AL+ +I+MD++L + Sbjct: 43 KLLVVDKSSLVRQSVSCITQPWGIQVDAAETAKIALDKWHHQQAEGSPYHLILMDLELLD 102 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 G ++ Q+ + S + +I ++ + + E++ G Y+ KPI+ + Sbjct: 103 RDGAKLLGQLYKTSSDSQTRLILMSGISQRNRAEQVLNLGNFVYLVKPIAPLRLL 157 >gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 242 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D++ L +++ ++G A +G +AL++ + D++++DI + + G E Sbjct: 12 KILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLIDIMMPGMDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ + + P++ +TA + D G + YI KP + I+ + Sbjct: 72 LCANLRQ---VTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLR 126 >gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K++IV+D+ +L ++ GY + +G EAL R + PD +II+DI + E+SG Sbjct: 2 KILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTN-PDIGLIILDIMMPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K++++D+ +P++ ++A + D+ + G + Y++KP + M ++ + Sbjct: 61 TEVLKEVRKDNP---VPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3] gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG ALE+ + + I+DI + ++ G+E+ Sbjct: 21 ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIMMPQMDGIEL 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A D+ G + YI KP S F+ +K + Sbjct: 81 CRRIREK---HSLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 >gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 267 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED+ + + GY G AL+ D++I+D+ L ++ G Sbjct: 43 MTKVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDG 100 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + I+ IP++ +TA + D G + Y++KP L + ++ + Sbjct: 101 LDVARTIRAQGIT--IPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLR 158 Query: 122 EA 123 A Sbjct: 159 RA 160 >gi|157150116|ref|YP_001450468.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074910|gb|ABV09593.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + + +GY L +G+E LEL ++ D+II DI + + Sbjct: 1 MEKTILLVDDEVDILDIQKRYLLQAGYQVLVAHDGLEGLELFKKKSVDLIITDIMMPNMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + TA + D G + +I+KP S + + + Sbjct: 61 GYDFISEV--QYLAPDQPFLFTTAKTSEQDRIYGLSLGADDFIAKPFSPRELVLRVNNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1450 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 V++VEDNELN +L +L+ ++G NG EAL+ + + D ++MD Q+ + G Sbjct: 1099 AHVLLVEDNELNQELALELLVSNGLSVEIAANGQEALDRLAGESRFDGVLMDCQMPVMDG 1158 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+ EL +PVIA+TA M GD E+ G +I KPI++ T+ K+I Sbjct: 1159 YTATRAIRRRPELAGLPVIAMTANVMSGDREKALAAGMNDHIGKPINVRDMFTTMAKWIR 1218 Query: 122 EA 123 A Sbjct: 1219 PA 1220 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQEI 59 +V++V+DN + +++ G+ A +G EA+ R Q D++++D ++ + Sbjct: 951 RVLVVDDNASARAILTHMLQQLGFGAEAVSSGAEAIARLRAVETQAPFDLMLLDWKMPGL 1010 Query: 60 SGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G++ + ++ ++ + ++P +I +TA+ +G + G +++KP++ S + T+ Sbjct: 1011 DGVQTIRALRAEAAVSQVPALIMITAYGREGVRQASADLGVAGFLTKPVAPSALLNTLMH 1070 Query: 119 YIG 121 IG Sbjct: 1071 AIG 1073 >gi|296122427|ref|YP_003630205.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296014767|gb|ADG68006.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 151 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 65/118 (55%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I +DN N +L + + Y +G + LE R+ +PD++++DI + ++SG E Sbjct: 6 RILIADDNLQNCELLDAYLASDEYEIAMAYDGQQTLEKVREWQPDLVLLDIMMPKLSGFE 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +++ + + +PV+ VTA GD E+ + G + +++KPI+ +K + Sbjct: 66 VCAKLRSEPSTKSLPVLMVTALNEMGDIEKAIQAGADDFLTKPINRLELTTRVKSLLR 123 >gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 250 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 6/124 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQE 58 ++ +++V+D + + + ++ + NG E L L + H D+I++D+ L + Sbjct: 12 MRTENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD 71 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G E+ +QI+ P++ VTA + D+ G + YI+KP + I Sbjct: 72 IDGFELCRQIR---NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINV 128 Query: 119 YIGE 122 + Sbjct: 129 QLRR 132 >gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E + ++ GY +G + L+ A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E +++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 LEVARRVRE---VKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|148283363|gb|ABQ57263.1| AdeR [Acinetobacter baumannii] Length = 226 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 14 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 74 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 128 >gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 224 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + L+ Y+ + G E L LA Q D++++DI L EISGLE Sbjct: 2 RILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPEISGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I K+++ +P++ +TA D + G + Y++KP ++ + IK + + Sbjct: 62 IIKRVRATGHT--MPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRRS 119 >gi|119509383|ref|ZP_01628532.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119465997|gb|EAW46885.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 277 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 63/120 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ED+ + L+ ++ G+ + NG+ ++ A++H PD+++ DI + +I G Sbjct: 7 KKILVIEDDTVTRNLYVKGLQAKGFDTISAENGLAGIQQAQEHLPDLVVCDITMPDIDGY 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++D IP I +T +G + + G + Y++KP +L + I + Sbjct: 67 SVLTMLRQDPVTAIIPFIFITGSCTRGCVRKGMELGADDYVTKPFTLDELLRAISTQLQR 126 >gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus degradans 2-40] gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 1653 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 7/125 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR----QHKPDVIIMDIQLQE 58 ++++V+DN +N + + ++E G I NG+EA+ + +I+MD Q+ E Sbjct: 1397 ARILLVDDNTVNQDVAKMMLEDFGLIIDVANNGLEAIAALDACSIREPYSLILMDCQMPE 1456 Query: 59 ISGLEITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + G E TK+I++ D + +IP+IA+TA AMKGD+E+ G + Y+SKPI Sbjct: 1457 LDGYETTKRIRKGATDFDNTKIPIIAMTANAMKGDKEKCIAAGMDDYLSKPIEADALEHM 1516 Query: 116 IKKYI 120 +K ++ Sbjct: 1517 LKLWL 1521 Score = 39.3 bits (92), Expect = 0.18, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 4/108 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K + I E N N + ++I + + + ++ DV +D +L ++ + Sbjct: 1252 KTIFIAESNPKNTAILENMISSK--RCIAVSSLPDSNLNLPNEPIDVAFIDRKL--LTSM 1307 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110 E +K + +TA D E G + Y++KPI+ S Sbjct: 1308 ESITPLKNKPNFANTQWLMLTAINQTKDIENYTAKGFDTYLTKPITQS 1355 >gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum WAL-14163] gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum WAL-14163] Length = 801 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59 K+V++VEDNE+N ++ L+E +G NG E + + D I+MDI++ + Sbjct: 677 KRVLLVEDNEINREIAVMLLEQTGIRCETAVNGAEGVSSFEKTVPGWYDAILMDIRMPVL 736 Query: 60 SGLEITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +G+E K+I+E + IP+IA+TA A + E + G Y++KPI + ++ Sbjct: 737 NGIESAKKIREMERRDAKTIPIIAMTANAFSEEREEALEAGINDYLTKPIDAEVMYACLR 796 Query: 118 KYIGE 122 Y+ Sbjct: 797 NYMRR 801 >gi|297537876|ref|YP_003673645.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylotenera sp. 301] gi|297257223|gb|ADI29068.1| response regulator receiver modulated metal dependent phosphohydrolase [Methylotenera sp. 301] Length = 331 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 72/117 (61%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D N+K+ + +++ Y +NG++ALELA + PD+I++D+ + E++G E Sbjct: 10 KLLIVDDEPTNLKVLKQVLQQD-YRLSFAKNGVDALELAARELPDLILLDVMMPEMTGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +Q+K Q IPVI VTA + DE + + G YI+KPI+ I ++ ++ Sbjct: 69 VCQQLKSQLNTQHIPVIFVTALKDEVDETKGFECGAVDYITKPITPVIVKARVRTHL 125 >gi|259417672|ref|ZP_05741591.1| response regulator receiver modulated serine phosphatase [Silicibacter sp. TrichCH4B] gi|259346578|gb|EEW58392.1| response regulator receiver modulated serine phosphatase [Silicibacter sp. TrichCH4B] Length = 423 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D+ L ++ ++ G+ ++ G EA+++ R PD+I+ D + ++G+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAEGGEEAMDICRADPPDLILSDWMMPGMNGI 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI---KKY 119 + + + +S I +T+ + K + G + +++KP+S I ++ Sbjct: 79 DFCRAFRAESHEAYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138 Query: 120 IG 121 + Sbjct: 139 LR 140 >gi|257486804|ref|ZP_05640845.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988679|gb|EGH86782.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010275|gb|EGH90331.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++V+D+ ++ + + T + E A + D++++DI + +SG Sbjct: 1 MTRVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGENEALSGRHDIVVLDIMMPRMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++I+ S+ +PVI +TA D + G + Y+ KP S + ++ + Sbjct: 61 IEVLRRIRAQSQ---VPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC 10987] gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC 10987] Length = 896 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ +E + +NG+E L++ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|16330974|ref|NP_441702.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653468|dbj|BAA18382.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 368 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED + D++ Y + +G L LA+QH PD+I+ D+ + ++G Sbjct: 1 MPKILIIEDQLEVRQNIEDILSLEDYEVISAPDGETGLALAKQHLPDLILCDVMMPRVTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++D L IP I +TA A + + G + Y++KP ++ + I + Sbjct: 61 FEVLMSLRQDPNLAVIPFILLTAKADHHAFRQGMELGADDYLTKPFTIDELLHAITTRLD 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 4/118 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++V+D +++ + G+ L R G E + LAR+ +PD++++D+ L ++ G E+ Sbjct: 5 LLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVMLPDLEGFEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +P++ +TA + D+ G + YI+KP + + +K + Sbjct: 65 CRRLRS---FTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRR 119 >gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] Length = 230 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I++D + + L +D +E G+ L NG + + LA++ P++I++DI + E+ G Sbjct: 1 MSKILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAKKQ-PELIVLDIMMPEMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++I+++ P++ ++A + D+ R G + YISKP L + I + Sbjct: 60 FEVCRKIRDELL---CPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+++ED E + ++ GY NG L+ A + D+I++D+ L E+SG Sbjct: 1 MSSVLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPELSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++E+ + P+I +TA D G + Y+ KP ++ + ++ + Sbjct: 61 LEVARRLREE---KNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 244 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED + + + + + +G ALEL RQ P+V+++D+ + GLE Sbjct: 19 KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPDGLE 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ V+ +TA A + D+ G + Y++KP S + + + Sbjct: 79 VCRRLRQ---FSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRR 134 >gi|110832965|ref|YP_691824.1| two-component hybrid chemotactic sensor and regulator [Alcanivorax borkumensis SK2] gi|110646076|emb|CAL15552.1| two-component hybrid chemotactic sensor and regulator, putative [Alcanivorax borkumensis SK2] Length = 2336 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 67/118 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 VM+ +D+ K+ L+E +GY + ++GM+A+ +PDV+++DI++ + G E+ Sbjct: 2212 VMVTDDSVTVRKVTTRLLERNGYEVVTAKDGMDAIAKLEDIRPDVMLLDIEMPRMDGFEV 2271 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ DS LQ +P+I +T+ + ER G YI KP S + TI++ +GE Sbjct: 2272 ASHVRHDSRLQNVPIIMITSRTGEKHRERAFDIGVNCYIGKPFQESELLSTIRELLGE 2329 >gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str. 'morsitans'] gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1] gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str. 'morsitans'] gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC 33331] Length = 1810 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH +++MDI + E+ G Sbjct: 1690 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1749 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T I+ + +P++A+TA AMKGD E+ G Y++KP+ + ++ ++ Sbjct: 1750 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDSDHLLSVMENWMR 1808 >gi|299142597|ref|ZP_07035728.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] gi|298576032|gb|EFI47907.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Prevotella oris C735] Length = 1340 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN D+ + + Q +G E L++A PD+II D+ + + G E+ Sbjct: 1080 LVVEDNPDIRTYIADVF-ANDFDVRQAADGQEGLQMALDIIPDMIISDVMMPNMDGNELC 1138 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++KE+ +P+I +TA +E + G ++Y++KP S S+ + + + Sbjct: 1139 RKVKENVRTSHVPIILLTAKDGNEAKEEGYESGADSYLTKPFSSSLLRTRVHNLVEQ 1195 >gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202] gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202] gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60] Length = 242 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ L +L + GY +G + L Q D +I+D+ L + GL Sbjct: 9 KRILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLPGVDGL 68 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I ++++ + P+I +A + + + G + Y++KP S+ + +K Sbjct: 69 DICRRVRAM--TRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRR 126 >gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC 35236] gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC 35236] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 242 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED +L D ++ + Y NG + +E R H P +I++D+ L Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEWVRLHSPSLILLDLMLPGCD 68 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + + I++ +P+I VTA + + D + G + YI KP S + ++ + Sbjct: 69 GLTLCRTIRQ---FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLL 125 Query: 121 GE 122 Sbjct: 126 RR 127 >gi|261854762|ref|YP_003262045.1| response regulator receiver protein [Halothiobacillus neapolitanus c2] gi|261835231|gb|ACX94998.1| response regulator receiver protein [Halothiobacillus neapolitanus c2] Length = 123 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 72/121 (59%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VEDNE+N + + GY L +G E + +A+ +PD+I+MD+ L + G Sbjct: 1 MARILLVEDNEMNRDMLSRRLARKGYEVLLAVDGGEGVAMAKSQQPDLILMDMSLPVLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I+ + + IP+IA+TA AM G+ + + GC + +KP+ L +E I++ + Sbjct: 61 WEATRAIRAEPATEAIPIIALTAHAMDGERAKALEAGCNDFDTKPVDLPRLLEKIEQQMA 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|220905438|ref|YP_002480750.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869737|gb|ACL50072.1| Hpt sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1007 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKP-DVIIMDIQLQEISG 61 V++VEDNE+N ++ R+L+E +G L NG EAL+L H P +++MD+Q+ + G Sbjct: 636 VLVVEDNEINAQIARELLEQAGLEVLLAANGQEALDLLDNPVHPPLGLVLMDVQMPVMDG 695 Query: 62 LEITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE T++I+ ++PV+A+TA + G Y++KP++ T++K++ Sbjct: 696 LEATRRIRAMGISPVDLPVVAMTAHTDMASRMDGKDVGMNDYLTKPVNPETLYATLEKWL 755 >gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + + + GY +G EAL ++ DVII+D+ L +I G+E Sbjct: 2 KLLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLPKIDGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + KQI++ EI ++ ++A D G Y+ KP I+ I Sbjct: 62 VLKQIRQKD--SEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRR 118 >gi|197116920|ref|YP_002137347.1| response receiver [Geobacter bemidjiensis Bem] gi|197086280|gb|ACH37551.1| response receiver [Geobacter bemidjiensis Bem] Length = 125 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ ++ L+ G+ NG +A+E D I MD+Q+ + G Sbjct: 2 RILVAEDDPTIRQMMATLLSRCGFDCRSVDNGRKAVEAWEDETFDFIFMDVQMPVMDGFA 61 Query: 64 ITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+ I+E L+ P+IA+TA AM+ D ++ G + Y+SKPI L +K Sbjct: 62 ATRMIREKEALKGGHTPIIALTAHAMEQDRQQCLDSGMDDYLSKPIDLDELFSLLKN 118 >gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium] gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ GY + NG +AL + D+ I+DI L +I Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E PVI +TA GD+ + YI+KP + + +K + Sbjct: 61 GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQL 116 Query: 121 GE 122 + Sbjct: 117 RQ 118 >gi|326801872|ref|YP_004319691.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] gi|326552636|gb|ADZ81021.1| response regulator receiver sensor signal transduction histidine kinase [Sphingobacterium sp. 21] Length = 528 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ +D+ + L++T Y +NG+ ALELA+ +PD+I+ DI + + G++ Sbjct: 42 HVLFADDDANMREYVSCLLKTQ-YRVTVVQNGIMALELAKTTQPDLILSDIIMPGMDGIQ 100 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +++D Q+IP+I ++ A + + G + Y+ KP + + IK +I Sbjct: 101 LLQALRQDPRTQDIPLILLSIRASQASKIDSFDAGADDYLVKPFTPPELLARIKAHI 157 >gi|319902736|ref|YP_004162464.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] gi|319417767|gb|ADV44878.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ D++++DI + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVETANSAEEALKM-DIGNYDLLLLDIMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + ++P+I +TA + D G + YISKP SL +K + Sbjct: 64 MASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122 >gi|304383610|ref|ZP_07366069.1| DNA-binding response regulator/sensor histidine kinase [Prevotella marshii DSM 16973] gi|304335134|gb|EFM01405.1| DNA-binding response regulator/sensor histidine kinase [Prevotella marshii DSM 16973] Length = 901 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN + Y L +G E L+ A++ PD+II D+ + GLE Sbjct: 647 RILVIEDNADVAAYIGSRLADR-YAILYAPDGNEGLKKAKELVPDLIITDLMMPHTDGLE 705 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q+++D + +P+I VTA + D + G +AY++KP + ++K + + Sbjct: 706 VCRQVRDDEIINHVPIIVVTAKITEADRVAGLQAGADAYLAKPFNSDELRTRVEKLLEQ 764 >gi|301164100|emb|CBW23656.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 638R] Length = 1330 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + + Y NG EAL + +++ P++II DI + E+ G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK D E IP+I +TA + + K G + YI KP ++ I TI + Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLTN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D +L + G+ +G A+ R+ +PD +++DI L ++ GL Sbjct: 23 RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLA 82 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 83 VLGRLRR--EAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 140 >gi|253565107|ref|ZP_04842563.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] gi|251946572|gb|EES86949.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_2_5] Length = 1330 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + + Y NG EAL + +++ P++II DI + E+ G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK D E IP+I +TA + + K G + YI KP ++ I TI + Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLTN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|226308004|ref|YP_002767964.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226187121|dbj|BAH35225.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D + + GY +G A+ Q D++++D+ + GL Sbjct: 4 RRVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVTRCEQMDADLVVLDVMMPGFDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ ++ +PV+ +TA A + D G + Y+SKP S+ + + ++ + Sbjct: 64 EVCRRIQA---VRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRR 120 Query: 123 A 123 A Sbjct: 121 A 121 >gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 307 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + D +E SG+ L +G AL + + PD+I++D + + G E Sbjct: 11 VLLVDDSPEALGFLTDALEQSGFSVLIATSGSAALNIVERITPDLILLDAVMPSMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K + + +IPVI +T + G Y+SKPI++ I+ ++ A Sbjct: 71 CRRLKANVGVAQIPVIFMTGLTETEHVVHALESGGVDYLSKPINVDELRARIRVHLRNA 129 >gi|209809112|ref|YP_002264650.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010674|emb|CAQ81061.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 755 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 1/120 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++VEDN N + ++ + +GY NG EA+ + D+I MDI + E+ G Sbjct: 493 SARLLVVEDNLANQIVIKNTLSYAGYTIDIANNGKEAISMVTDTDYDLIFMDISMPEMDG 552 Query: 62 LEITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + TK+I+ S+ E +P+IA+TA A+ GD+ER G Y+SKP + + +E + Y+ Sbjct: 553 MTATKKIRTLSKHHEKMPIIALTAHALSGDKERFIDAGMTDYLSKPFNRTALLECLATYL 612 >gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D++ ++ + GY L+ +G EAL+L +HK D++I+D+ + + G Sbjct: 1 MYNILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKVDLLIIDVMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E Q +P+I ++A + D+ G + Y++KP + +K + Sbjct: 61 IRATLKIREK---QNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|53714602|ref|YP_100594.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|60682624|ref|YP_212768.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] gi|52217467|dbj|BAD50060.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides fragilis YCH46] gi|60494058|emb|CAH08850.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis NCTC 9343] Length = 1330 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + + Y NG EAL + +++ P++II DI + E+ G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK D E IP+I +TA + + K G + YI KP ++ I TI + Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLTN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio vulnificus CMCP6] gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016] gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio vulnificus MO6-24/O] gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio vulnificus CMCP6] gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016] gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio vulnificus MO6-24/O] Length = 227 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L +++ G+ + +G + L+ D+I++D+ + +++G Sbjct: 1 MANILLIDDDTELTSLLTEVLSYEGFNVTEANDGEQGLQALSAE-IDLILLDVMMPKLNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++E + PV+ +TA + D + G + Y+ KP S + IK + Sbjct: 60 IDTLKKLREQW---DTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143] gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143] Length = 269 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 18 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 78 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 133 >gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 1121 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N K+ L+ GY A NG+EALE R+ DV++MD+Q+ E+ GLE Sbjct: 883 KILLAEDNAVNQKVALRLLARLGYRADVVANGLEALEAVRRQSYDVVLMDVQMPEMDGLE 942 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +++IK + P +IA+TA AM+GD E+ G + Y++KPI + ++ + + Sbjct: 943 ASRRIKLGEAGRAAPRIIALTADAMQGDREKCLAAGMDDYLTKPIKVEALVDALTR 998 Score = 80.6 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 62/120 (51%), Gaps = 15/120 (12%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 K+++ V+DN+ N ++ ++ G + +R+ EAL ++ P D+ I+D+Q+ +++G Sbjct: 740 KRLLAVDDNDTNRRILVLQSQSWGMLVRDSRSPQEALGWIKRGDPFDLAILDMQMPDMNG 799 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA-----YISKPISLSIFMETI 116 L + ++I+ +P++ ++ R+ G +A ++KPI S + + Sbjct: 800 LMLGREIRAH--RPNLPLVLYSSLG-------CREVGPDAALFAFQLTKPIKPSQLYDAL 850 >gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED++ + + +E G+ NG A + ++ ++I++D+ L I+GL Sbjct: 11 ARLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVMLPGINGL 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +++ E + V+ V+A + D + G + Y+ KP + + + + Sbjct: 71 DLCRKLIELPQRPL--VLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRR 128 >gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 943 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN++N + + +G +G EAL L Q D+++MDIQ+ E+ G E Sbjct: 695 RVLLAEDNQVNRLFLKHFLVEAGCEVRLAGSGGEALALLAQGPADLVLMDIQMPEMDGTE 754 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ + +PV+A+TA++MKGD ER G + Y+SKP+ + +++ + Sbjct: 755 ATRRIRDGEVGEAARRLPVVALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMRRVL 814 Query: 121 GE 122 Sbjct: 815 DR 816 >gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ + G+ ++ +G EAL+L ++ D++I+D+ + + G Sbjct: 1 MQSILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENNQVDLMIVDVMMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 61 IRTTLKVRE---TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQE 58 M +++VED E ++ Y + +G +AL+ + + ++II+D L + Sbjct: 12 MANTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPK 71 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++I+++ +IP++ +TA GD+ G + YI+KP + + I+ Sbjct: 72 LDGLEVLRRIRQND---DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRV 128 Query: 119 YIGEA 123 + + Sbjct: 129 MLRHS 133 >gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] Length = 235 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VED++ + +++ GY Q +G+E LE+ + + + I+DI + + G Sbjct: 3 MNHVLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIMMPRMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +T +++E + PVI ++A + + D+ G + Y++KP + + + + Sbjct: 63 IRMTMKLREKYDF---PVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|189466788|ref|ZP_03015573.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM 17393] gi|189435052|gb|EDV04037.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM 17393] Length = 1339 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN+ + R+ + Y +G +AL++ +++ P++II DI + E+ G E Sbjct: 1078 KILIVEDNDELREYLRNTLSDD-YTIQVCSDGKQALDIVKEYMPNMIISDIMMPEMRGDE 1136 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++K D E IP+I +TA + K G + YI KP ++ I TI + Sbjct: 1137 LCHKLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATIANIL 1193 >gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01] gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01] Length = 1000 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN +N K+ + +GY NG EA+E+ +++ +I+MD + + G E Sbjct: 717 KILVVDDNTVNQKIAGLHVTKAGYEFDLAANGQEAVEMFAKNQYALILMDCMMPVMDGFE 776 Query: 64 ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK+I++ IP+IA+TA + D ++ G + Y+ KP ++ + + K Sbjct: 777 ATKRIRQLEKEVNRGYRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKAAVLKDKLSKA 836 Query: 120 I 120 + Sbjct: 837 V 837 Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 ++++VEDN +N K+ L+ +GY NG AL++ +Q + D+I+MD + + G Sbjct: 880 RILLVEDNTVNQKVASLLLSKAGYQFEIAENGQIALDMFQQDNSFDIILMDCMMPVMDGF 939 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TK+I+ + L + P+IA+TA + D +R G +AY+ KP+ + I+ Sbjct: 940 EATKEIRAYEKVSGLPKTPIIALTASVVDDDIQRCYDSGMDAYVPKPVRKEKLLHQIESV 999 Query: 120 I 120 I Sbjct: 1000 I 1000 >gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 6/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL---ARQHKPDVIIMDIQLQ 57 M + V++V+D + R +E G++ + G EAL A +PD+ ++D+ L Sbjct: 1 MARHVLVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGLP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ GLE+ ++++ S ++ VI VTA + + D+ G + YI+KP S + +K Sbjct: 61 DLDGLEVLRRVRAQS---DLFVILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVK 117 Query: 118 KYIGE 122 + Sbjct: 118 TVLRR 122 >gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans TK24] gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans TK24] Length = 285 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + G+ +G A++ AR +PD +++D+ L ++ GL Sbjct: 60 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 119 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ D L ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 120 VLGRLRRD--LPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 177 >gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQE 58 M +++VED E ++ Y + +G +AL+ + + ++II+D L + Sbjct: 1 MANTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ ++I+++ +IP++ +TA GD+ G + YI+KP + + I+ Sbjct: 61 LDGLEVLRRIRQND---DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRV 117 Query: 119 YIGEA 123 + + Sbjct: 118 MLRHS 122 >gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7] gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+I N + L + ++++D+ L GL Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ EIP++ +TA + D + G + YI KP + + IK + Sbjct: 67 ICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123 >gi|186684616|ref|YP_001867812.1| response regulator receiver modulated diguanylate phosphodiesterase [Nostoc punctiforme PCC 73102] gi|186467068|gb|ACC82869.1| response regulator receiver modulated diguanylate phosphodiesterase [Nostoc punctiforme PCC 73102] Length = 406 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 58/115 (50%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED E + DL+E + + NG + LA PD+I+ D+ + EI G Sbjct: 1 MPKILIIEDEEAVRENILDLLEAEDFETIAAANGRIGVHLAICEVPDLILCDMMMPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + +++D IP I +TA + K D + G + YI+KP S + + I Sbjct: 61 YGVLTALRQDPSTATIPFIFLTAKSAKSDFRQGMDMGADDYITKPFSRAELLSAI 115 >gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 244 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + +E + +G ALE+A+ +PD I+D+ + + G Sbjct: 19 RVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFT 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + E PV+ +TA D G + Y++KP +L + ++ + Sbjct: 79 VLNKLREAGD--EAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRR 135 >gi|257094360|ref|YP_003168001.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046884|gb|ACV36072.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 797 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VEDNE+N ++ ++E+ G +G +A+ R VI+MD Q+ + Sbjct: 524 MTGRVLLVEDNEVNREISGAILESLGCAVDFAHDGEQAVSARRSGSYQVILMDCQMPVLD 583 Query: 61 GLEITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G T+QI+ + E+P+IA+TA A+ GD E G Y++KPI+ + + Sbjct: 584 GFAATRQIRAEERAAGRAEVPIIALTANALAGDRELCLNAGMNDYLAKPINRAQLTAALA 643 Query: 118 KYI 120 +Y+ Sbjct: 644 RYL 646 >gi|237724326|ref|ZP_04554807.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|229437195|gb|EEO47272.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1360 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN + + +++ Y +G +A + H+ D+II D+ L +I+G E Sbjct: 1110 TLLLIDDNAELLYIMKEIF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1168 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IK D IPV+ +TA D G + YI+KP + + + I Sbjct: 1169 LCTRIKSDLRFNHIPVVILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1226 >gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+I+ED++ + + +E GY + NG + + PD+I++D+ + +SG Sbjct: 5 KKVLIIEDDKNIRRFLQLELEHEGYKVIIGENGEIGINKFKNETPDIILLDLMMPILSGE 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K I++ EIP+I +TA ++ + G + YI+KP + ++ + Sbjct: 65 EVCKIIRK---TSEIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALR 120 >gi|224540237|ref|ZP_03680776.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus DSM 14838] gi|224518116|gb|EEF87221.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus DSM 14838] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ +++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NIGSYNLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + ++P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 225 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++++D +++ + +E GY +Q +G+EALE + PD++I+D+ L +IS Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ +SE +P+I +TA + + G + YI+KP S + + + Sbjct: 61 GENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP 31758] gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC 29473] gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC 33638] gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC 43970] gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia pseudotuberculosis IP 31758] gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC 33638] gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC 29473] gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC 43970] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10] gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP 32953] gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua] gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516] gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F] gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola] gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. F1991016] gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. IP275] gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. E1979001] gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII] gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+] gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92] gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Pestoides A] gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. India 195] gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Nepal516] gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27] gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003] gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10] gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92] gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola] gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. IP275] gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. F1991016] gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. E1979001] gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Nepal516] gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. India 195] gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Pestoides A] gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004] gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038] gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27] gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003] gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|296159566|ref|ZP_06842390.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890274|gb|EFG70068.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 246 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D+ + L ++++G+ A +G + +P V+++DI + Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++ + +IPVI VTA D G + Y++KP + I + Sbjct: 61 GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|296159560|ref|ZP_06842384.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890268|gb|EFG70062.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 245 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D+ + +L ++ G+ +GM + +P +I++DI + E+ Sbjct: 1 MNPSILVVDDDPVVRELVSGYLQGRGFKVDTLEHGMALQRQLQDERPALIVLDIMMPELD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + ++ +IPVI +TA A D + G + Y+ KP S + I+ + Sbjct: 61 GISALRALR--VAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|289663657|ref|ZP_06485238.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 238 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ E L L +++++DI L + G Sbjct: 11 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGH 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 71 EVLREIRQ---WSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQ 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED ++ +G+ ++ G E L++ + D+ ++D+ L I G Sbjct: 4 MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLPGIDG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ K I++++ +++ +I +TA D+ + G + YI+KP S + I+ + Sbjct: 64 LEVCKAIRKEN--KKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|215483396|ref|YP_002325609.1| response regulator [Acinetobacter baumannii AB307-0294] gi|213988889|gb|ACJ59188.1| response regulator [Acinetobacter baumannii AB307-0294] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|70729128|ref|YP_258864.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68343427|gb|AAY91033.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 633 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 67/118 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VEDN +N + + ++ + G+ +G +A+ A + I+MD +L + G Sbjct: 515 RNVLLVEDNPVNQTVIQAMLRSLGFTVSIVTDGAQAVRSAESLIFEAILMDCRLPLVDGY 574 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T+QI++ ++P+IA+TA A++GD E G Y++KP + + +++++ Sbjct: 575 EATRQIRQLPGCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRADLQQILQRWV 632 >gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 219 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED + ++ +G+ T G +A+ LA Q D+II+D+ L +I G Sbjct: 1 MSSILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q++ +PVI +TA + D +GG + Y+ KP S + I+ + Sbjct: 61 FEVLQQLRGQGVG--VPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118 >gi|261408735|ref|YP_003244976.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285198|gb|ACX67169.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D ++ + G+ + G EAL AR+ KP ++++D L E+S Sbjct: 1 MAHTLLLVDDERKVIEFMEPFLRQEGFHIITASTGTEALAKAREAKPSLVVLDWMLPELS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ S + +I VTA + D+ + G + Y++KP SL I+ + Sbjct: 61 GIEVCRELRKSSRVG---IIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] Length = 236 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED + + + GY + NG E LE+ + + I+DI + + Sbjct: 1 MQHNILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +T +++E +IPVI ++A + D+ G + Y++KP + + + I Sbjct: 61 GITMTMRLRE---TYDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|166033308|ref|ZP_02236137.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC 27755] gi|166027665|gb|EDR46422.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC 27755] Length = 236 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED++ K + ++E + Y + T G EA L PDV+I+D+ L ++ G++ Sbjct: 6 RVLIVEDDKNIRKFIQTILEANDYDVIATETGKEAYSLITSRCPDVVILDLGLPDMDGMK 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K+++ +P+I V+A + D+ G + YI+KP S + I+ I Sbjct: 66 ILKEVRA---WSNMPIIVVSARDHEKDKVEALDMGADDYITKPFGTSELLARIRAAIR 120 >gi|162295961|gb|ABX83929.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129 >gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894] gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894] Length = 252 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 19 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 78 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 79 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 135 >gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus thermodenitrificans NG80-2] gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus thermodenitrificans NG80-2] gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+E + +E Y +G+EAL++ D+I++DI ++ I G+ Sbjct: 4 KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMIND-DFDLIVLDIMMEGIDGM 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I++ + P++ V+A ++ D+ + G + YI+KP SL I ++ Sbjct: 63 ELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRR 119 >gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] Length = 223 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED L + ++ + +G E + +A DV+I+DI L G E Sbjct: 2 RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K ++E+ PV+ +TA + + G + Y+ KP L + ++ I Sbjct: 62 ILKSMRENGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 118 >gi|319783915|ref|YP_004143391.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169803|gb|ADV13341.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 244 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ ++ D + +G +G++ R K D+I++D+ L +GL Sbjct: 13 RILIVEDDLEIARMLGDTLTDNGMTVEIAESGVQMNAALRTQKFDLIVLDVMLPGENGLN 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ IP++ +TA + D + G + Y++KP S I+ + Sbjct: 73 ICRRLRA---ATNIPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRR 128 >gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 65/125 (52%), Gaps = 5/125 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + +++++D K R + + GY ++ G E L A +KPD++++D+ L + Sbjct: 4 MSQTATILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNKPDLLVLDLGLPD 63 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G ++ ++ +E +PV+ ++ A +G + GG Y++KP + F+ ++ Sbjct: 64 MDGQQVLREFRE---WSTVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRA 120 Query: 119 YIGEA 123 + +A Sbjct: 121 LLRQA 125 >gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516] gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +M+V+D + +K ++T Y L+ NG +ALEL ++K D+ ++DI ++ + G Sbjct: 1 MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNKIDLFLVDIMMEGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+T++I+E + P+I ++A + D+ G + YI+KP + IK + Sbjct: 61 LELTQKIRE---VSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira platensis NIES-39] Length = 730 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED+ +N ++ ++ GY A +G L+ D+I+MD Q+ + G E Sbjct: 477 KILLAEDDLVNQEVVLTQLQQLGYTADAVCDGEAVLQHLETQHYDLILMDCQMPILDGYE 536 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I+ Q P +IA+TA M D +R + G + YI+KPI L + I +++ Sbjct: 537 TTARIRRRQNSQRPPIIIALTASVMPSDRDRCIEAGMDDYITKPIDLQALVNLINRWV 594 Score = 62.8 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 K+++V + L + + + G AL+ +I+MD++L + Sbjct: 307 KLLVVNKSSLVRQSVSCITQPWGIQVDAAETAKIALDKWHHQQAEGSPYHLILMDLELLD 366 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 G ++ Q+ + S +I ++ + + E++ G Y+ KPI+ + Sbjct: 367 RDGAKLLGQLYKTSSDSSTRLILMSGISQRNRAEQVLNLGNFVYLVKPIAPLRLL 421 >gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886] Length = 725 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 60/117 (51%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED +N ++ + ++ G + NG A++ + D+I MD Q+ + G + Sbjct: 598 RVLVVEDTLVNQRVTQAMLVRLGVDVVVAENGQVAIDYCKHDIFDLIFMDCQMPVMDGYQ 657 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++E P++A+TA A D E K G + YI+KP+ + IK ++ Sbjct: 658 AARLLREHGYAPHTPIVALTANATAQDRENCLKSGMDDYIAKPVRKAELERMIKNHM 714 Score = 77.5 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 5/121 (4%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEIS 60 ++V+D+ LNM++ + G + +A E+ + ++I+D + Sbjct: 444 LLVDDSRLNMRITSAQLSNLGCQVSCCVHSEDAEEMIAERIDTAKPFKLVILDKLMPNSD 503 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++++ + ++ +TA D ++ E Y+S+P + + + + Sbjct: 504 GFSIASRLRKRFGKRCPSLMMITAAPEVHDNVKLESLNIEGYLSRPYKFNDLRNHLARIL 563 Query: 121 G 121 Sbjct: 564 R 564 >gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L ++ G+ +G EAL +AR+ PD IMD+ + + G E Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMPGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + PV+ +TA G + Y++KP SL + ++ + Sbjct: 68 LLGKLRQEGL--DGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124 >gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 645 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 68/119 (57%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++MIV+D N+ L D++ G+ + +G +ALE A + PD+I++DI++ + G Sbjct: 8 ARIMIVDDTPANLNLLMDMLLKKGHQVVAFPSGQQALEAASKTPPDLILLDIRMPGMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K+D +LQ+IPVI ++A D+ + G Y+SKP ++ ++ Sbjct: 68 EVCRKLKQDPDLQDIPVIFISALQDVSDKVQAYNTGGVDYVSKPFQPEEVYARVETHLR 126 Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I ED+ L+ F +++ G+ +G + + + D I+MDI+L I G E Sbjct: 522 RILIAEDDSLSRIFFEKILQGEGHRVESVEHGDQVMSRLAMNDYDCILMDIELPGIRGDE 581 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 IT +I+ L ++IP+ AVTA+ GD E K G + Y+ KP+ + F E KK+ Sbjct: 582 ITTRIRAADNLGAKKDIPIFAVTAYTQPGDREHFLKAGMDDYLPKPLGIQEFREAFKKH 640 >gi|254522018|ref|ZP_05134073.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219719609|gb|EED38134.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN ++ + +E G+ ++G++ LA ++ DV+++D+ L + G+E+ Sbjct: 2 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D+ + PV+ +TA D+ G + Y++KP ++ ++ I Sbjct: 62 CRRLRNDAR-KSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRR 118 >gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus C3-41] gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus C3-41] Length = 916 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K ++IV+D+ N+ + +ET G L ++G+E LE+ + H D+++MDI + + G Sbjct: 792 KNILIVDDDNRNIYALKTALETRGMNILVAKDGLECLEVLQAHHEIDLVLMDIMMPNMDG 851 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E I++ + E+P+IA+TA AMK D ++ + G YISKP++L + ++ ++ Sbjct: 852 YEAMTIIRQQMKRTELPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 910 >gi|162147183|ref|YP_001601644.1| regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544237|ref|YP_002276466.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785760|emb|CAP55331.1| putative regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531914|gb|ACI51851.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 263 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED+ L +++ GY ++G E D+I++D+ L +GL Sbjct: 19 ARILVVEDDPGMRTLLVRVLQGDGYRVRGVQDGREMWSALATSPADLIVLDVMLPGTNGL 78 Query: 63 EITKQIKEDS-------ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 ++ + ++ +IPVI V+A + D + G + Y++KP + Sbjct: 79 DLCRSLRRGGVPVDGVVPDPQIPVIMVSARGEELDRVVGLELGADDYVAKPFGQKELLAR 138 Query: 116 IKKYIGE 122 ++ + Sbjct: 139 VRAVLRR 145 >gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16] gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + SG++ R+G + L AR+H D+I++D+ L + G + Sbjct: 2 RILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + ++ PV+ +TA D + + G + Y+ KP + + + I+ + Sbjct: 62 VLRELRRE---RDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRR 117 >gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37] gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii 37] Length = 1278 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 +K+++V+D+ N ++ G + NG AL+ LA + ++++MDI + + G Sbjct: 1158 RKILLVDDDLRNTYALSKVLREYGLEVIMADNGKLALQKLAEEENIELVLMDIMMPVMDG 1217 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E ++I+ + +++P+IA+TA AM D + + G Y KPI + + +K ++ Sbjct: 1218 YEAMRKIRSQTRFKKLPIIALTAKAMPEDRTKSIEAGANDYCIKPIDVDKLIAIMKIWLF 1277 Query: 122 E 122 Sbjct: 1278 R 1278 Score = 102 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 68/130 (52%), Gaps = 16/130 (12%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K V+++ED+ M++ DL GY L G E LELA ++P I++D+ L +ISG Sbjct: 890 KSVLVIEDDPSFMRILIDLSRHKGYRGLSALTGREGLELAAMYQPSAIVLDLGLPDISGR 949 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEE-RIRKGGCEAYISKPISLSI---------- 111 ++ +Q+K++ + IPV ++A D+ + + G +++KP+S Sbjct: 950 QVLEQLKQNINTRHIPVHILSA----EDKNTEVLQIGAVGFLTKPVSGEDIDSLFCNIEH 1005 Query: 112 -FMETIKKYI 120 ++IK+ + Sbjct: 1006 LLQDSIKRVL 1015 Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED+ N LI G EA E +I+D+ L +ISG Sbjct: 1012 KRVLLVEDDNNNRLAVTRLIANKNIEICSVSTGREAQEKLLSELFHCVILDLSLPDISGF 1071 Query: 63 EITKQIKEDSELQEIPVIAVTAF--AMKGDEE 92 E+ +++ + + P+I T + + +E Sbjct: 1072 ELLNRLRHNKSITLPPIIVYTGRELSSEEYKE 1103 >gi|330821522|ref|YP_004350384.1| DNA-binding response regulator ColR [Burkholderia gladioli BSR3] gi|327373517|gb|AEA64872.1| DNA-binding response regulator ColR [Burkholderia gladioli BSR3] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED+ + + GYI +G + LA H+ D+I++D+ L + G Sbjct: 2 RILVIEDDPDILANISGHLGNRGYIVDCAFDGQQGYVLATAHEFDLIVLDLMLPRLDGYS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E++ L E P+I VTA D + G + Y+ KP +L+ +K + + Sbjct: 62 LCRKLREEARL-ETPLIMVTARDTLDDRLQGFDAGADDYLVKPFALAELAARVKALLHRS 120 >gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 224 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + IV+D++ L +E GY N L+ + KPD++I+DI + + G E+ Sbjct: 5 IYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDKPDMLILDIMMPGMDGYEL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI++ S ++P+I V+A D+ + G + YI+KP S + +K Sbjct: 65 CRQIRKKS---DVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRR 119 >gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] Length = 214 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED++ +L + + T Y + +G+E ++ + D+I++D+ + ++G E+ K Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ S IP+I +TA + D+ + G + YI+KP S + M ++ + + Sbjct: 62 IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114 >gi|224823772|ref|ZP_03696881.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224604227|gb|EEG10401.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++V+D+ + D + G+ + +G L A + ++++D+ + ++G Sbjct: 1 MTHVLLVDDDIELSAMLADYLGQEGFRVSRAADGESGLREALSGRYAIVVLDVMMPRLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++++ S+ +PV+ +TA D + G + Y++KP ++ + +K + Sbjct: 61 IEVLRRLRQHSQ---VPVLMLTARGDDIDCIMGLELGADDYVTKPCAMRTLVARLKALLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|198274494|ref|ZP_03207026.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135] gi|198272696|gb|EDY96965.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135] Length = 1398 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ R ++ Y L+ G EAL L + D II D+ + + G+E+ Sbjct: 1149 ILVVEDNKDMRDYIRSIL-AEYYNVLEASQGEEALALLHANNVDFIISDLMMPVMDGMEL 1207 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++K D + IP + +TA K G +A++ KP ++ + I + Sbjct: 1208 SRRVKNDFSISHIPFLMLTAKTSDEARLESYKMGADAFLLKPFDENMLLARISNIL 1263 >gi|115376279|ref|ZP_01463519.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] gi|115366704|gb|EAU65699.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1] Length = 614 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V+IV+D+ +++ R+ + GY + R+G +AL R+H+PD+I+MD+++ + G+ Sbjct: 292 RTVLIVDDDPTHVQHVREGLAPQGYRFREARDGAQALSAIREHRPDLILMDVEMPGLGGV 351 Query: 63 EITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ + +K + IPVI +TA G + + G + Y+ KP + +K Sbjct: 352 EVCRIVKANAGEGGFGFIPVILMTARQAAG-KVEGLELGADDYLVKPFDMLELSARVKSM 410 Query: 120 IG 121 + Sbjct: 411 LR 412 >gi|83649524|ref|YP_437959.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637567|gb|ABC33534.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 242 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++V+D++ +L + +E +GY +G A+ +++P +II+D+ L + Sbjct: 1 MTERLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +++++ + P+I +T+ DE + G + Y++KP+ + + I+ + Sbjct: 61 GLSVCREVRKHYKG---PIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|120597633|ref|YP_962207.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. W3-18-1] gi|146294228|ref|YP_001184652.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella putrefaciens CN-32] gi|120557726|gb|ABM23653.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella sp. W3-18-1] gi|145565918|gb|ABP76853.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella putrefaciens CN-32] gi|319427573|gb|ADV55647.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella putrefaciens 200] Length = 338 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D N+ + ++ Y +G AL L + PD+I++D+ + ++G Sbjct: 4 ATILVVDDTPENIDILVGIL-GEDYKVKVAIDGPRALALVAKSLPDLILLDVMMPGMNGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ K +K++ IPVI VTA + DE + + G YI+KP+S + +K ++ Sbjct: 63 EVCKLLKQEPLTCHIPVIFVTALSEVADETQGFELGAVDYITKPVSAPVVKARVKTHL 120 >gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas haloplanktis ANT/505] gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas haloplanktis ANT/505] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+I N + L + ++++D+ L GL Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ EIP++ +TA + D + G + YI KP + + IK + Sbjct: 67 ICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123 >gi|331271106|ref|YP_004385815.1| two component transcriptional (response) regulator [Clostridium botulinum BKT015925] gi|329127601|gb|AEB77543.1| Two component transcriptional (response) regulator [Clostridium botulinum BKT015925] Length = 230 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++DNE + +E + + AL + + K D+II+DI + E+ Sbjct: 1 MKNKILVIDDNEDICTTIKSYLENYDFNVKTVTSCRNALNILNE-KFDLIILDIMMPEMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E I++ P++ V+A ++ D+ + G + YI+KP SL I+ ++ Sbjct: 60 GIEFCSIIRKKV---SCPILFVSAKILEEDKLQAFAIGGDDYITKPFSLKELKARIESHL 116 Query: 121 GE 122 Sbjct: 117 RR 118 >gi|325978470|ref|YP_004288186.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178398|emb|CBZ48442.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 226 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED ++ + GY +G A+++A ++ DV++MDI + SG+E Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +I +TA A D G + Y++KP SL + ++ Sbjct: 62 AVQEIRQTGNQSH--IIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118 >gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 219 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + GY +G E L A + D+I++DI L ++G Sbjct: 2 RLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLPGMNGYR 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + + P++ +TA + DE G + Y++KP S + +K + Sbjct: 62 VCAALRAAGD--DTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRR 118 >gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 5/124 (4%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K K+++++D+ +L + +E G+ NG E D+II+D+ L Sbjct: 1 MNKNSKILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVIDSDFDLIILDVMLPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G ++ K I+ ++ P++ +TA D+ + G + Y+ KP + + IK Sbjct: 61 MGGFDVLKTIRS---VKMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKA 117 Query: 119 YIGE 122 + Sbjct: 118 ILRR 121 >gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + + ++ GY NG L+ A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E + P+I +TA D G + YI KP ++ + I+ + Sbjct: 61 MEVARRLREK---KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|169795908|ref|YP_001713701.1| two-component response regulator [Acinetobacter baumannii AYE] gi|213157394|ref|YP_002319439.1| AdeR [Acinetobacter baumannii AB0057] gi|301344928|ref|ZP_07225669.1| AdeR [Acinetobacter baumannii AB056] gi|301509916|ref|ZP_07235153.1| AdeR [Acinetobacter baumannii AB058] gi|301595364|ref|ZP_07240372.1| AdeR [Acinetobacter baumannii AB059] gi|332854443|ref|ZP_08435375.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332868449|ref|ZP_08438162.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|88758852|emb|CAJ77842.1| AdeR [Acinetobacter baumannii AYE] gi|169148835|emb|CAM86704.1| two-component response regulator [Acinetobacter baumannii AYE] gi|193077374|gb|ABO12180.2| AdeR [Acinetobacter baumannii ATCC 17978] gi|213056554|gb|ACJ41456.1| AdeR [Acinetobacter baumannii AB0057] gi|306485917|gb|ADM92605.1| AdeR [Acinetobacter baumannii] gi|332728019|gb|EGJ59411.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332733374|gb|EGJ64560.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|331085462|ref|ZP_08334547.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407700|gb|EGG87198.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 145 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED++ + + + GY Q NG E L + + K D+ I+DI + + Sbjct: 1 MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +T +++E E PVI ++A + + D+ G + Y++KP + M + + Sbjct: 61 GITMTMRLREKYEF---PVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1] gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1] Length = 208 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I+GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTYDLIVLDIMIPGINGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 62 VLQKLRADNHT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|299770126|ref|YP_003732152.1| AdeR [Acinetobacter sp. DR1] gi|298700214|gb|ADI90779.1| AdeR [Acinetobacter sp. DR1] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G + ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMVVIRAMNGKQAIELHSSQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRVGADDFVVKPFNPNEVIARVQAVLRR 129 >gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D L R+ + G+ + N +AL + + PD +I+D+ L + G + Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++E E PV+ +TA D+ G + Y++KP SL + ++ + A Sbjct: 76 LRRVREMGT--ECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRA 132 >gi|290960601|ref|YP_003491783.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260650127|emb|CBG73243.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 464 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+++ED+E + D + G G + L R DV+++D+ L ++ Sbjct: 1 MGVRVLLIEDDETIAEPLADGLRHFGLTVHHVATGADGL---RGPYGDVVLLDLGLPDMD 57 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ + I+ ++P+I ++A + D + G + Y++KP S+ + I+ Sbjct: 58 GIDVCRGIR---RTSDVPLIILSARGEEADRVLGLELGADDYLAKPFSIRELVARIRAVS 114 Query: 121 GE 122 Sbjct: 115 RR 116 >gi|271499886|ref|YP_003332911.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343441|gb|ACZ76206.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 248 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED + R + SG L NG +ALEL KPD++++D+Q+ + G ++ Sbjct: 18 VLIAEDEPEIADILRAYLTRSGLRTLHAANGRQALELHLAMKPDLVLLDVQMPLVDGWQV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ + PVI +TA D+ + G + Y+ KP + + + ++ + A Sbjct: 78 LSGIRLRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133 >gi|256827452|ref|YP_003151411.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583595|gb|ACU94729.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 243 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 5/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISG 61 ++ +D+ ++ ++ GY +G+EA+ D++I+DI + + +G Sbjct: 11 HILFADDDADIREVVSIMLRAEGYYVDLAGDGLEAMRYLDNPDSNYDLVILDIVMPQATG 70 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K +++ +PV+ +TA D+ R G Y+ KP S++ F+ +K + Sbjct: 71 YDVCKHLRQ---TSAVPVLFLTARGQDEDKVRGFAFGGNDYLVKPFSIAEFIARVKAMLR 127 Query: 122 E 122 Sbjct: 128 R 128 >gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1248 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I EDN +N K+ ++ GY+A NG AL+ + + D++ MD Q+ E+ G E Sbjct: 998 RILIAEDNPVNQKVALYQLQKLGYMADVVENGRRALDALARSRYDIVFMDCQMPELDGYE 1057 Query: 64 ITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ ++ + +++ VIA+TA +++GD E+ G + Y+SKP+ + I+++ Sbjct: 1058 ATRDLRAIEGDVRHTWVIAMTANSLEGDREKCLNAGMDDYVSKPVKPEVLHAAIRRF 1114 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQE 58 +V+ V+DN+ N + L+ G Q +G +AL + + D+ I+D+Q+ E Sbjct: 845 RVITVDDNDTNRAILHHLLSNWGMREQQAASGKQALSILQAEAGRGRMFDLAILDMQMPE 904 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GLE+ + +K+D ++ +T+ + D E +R+ G +AY++KP+ S + + Sbjct: 905 MDGLELARAMKKDPRFASARIVMLTSVDRQEDPEALRETGVDAYLTKPVKQSQLYDCL 962 >gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 270 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +L + G+ +G A+ AR+ +PD +++D+ L ++ GL Sbjct: 44 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 103 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E E+PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 104 VLARLRR--ERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRS 161 >gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 226 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E + + GY ++ NG LE+A + + D+II+D+ L EI+G Sbjct: 1 MVKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++I++ + E+P+I +TA D+ G + YI+KP ++ + I+ + Sbjct: 61 LEVLRRIRK---VSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAL 116 >gi|162295958|gb|ABX83927.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129 >gi|38230268|gb|AAR14189.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129 >gi|189346221|ref|YP_001942750.1| histidine kinase [Chlorobium limicola DSM 245] gi|189340368|gb|ACD89771.1| histidine kinase [Chlorobium limicola DSM 245] Length = 691 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++VEDN +N ++ ++ + NG+EA++ +++ ++ MD+Q+ + GL Sbjct: 566 RKILLVEDNIINQQVATAMLSKLNFPVDTAMNGLEAIDALKKNTYALVFMDLQMPVMGGL 625 Query: 63 EITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E K I+ +IP+IA+TA A++ D++ + G +I KP+++ ++K+ Sbjct: 626 EAVKTIRNKETGTADPDIPIIAMTANAIQKDKDECLQAGMNDFIIKPVTIRELQTVLEKW 685 Query: 120 IGE 122 I Sbjct: 686 IPR 688 >gi|325279188|ref|YP_004251730.1| response regulator receiver sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] gi|324310997|gb|ADY31550.1| response regulator receiver sensor signal transduction histidine kinase [Odoribacter splanchnicus DSM 20712] Length = 374 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 62/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D + N+ L + L+ GY L NG EALE+ R PD+I++D+ + + G E Sbjct: 9 KLLVVDDVQTNVLLLKALLGKEGYGILVANNGQEALEVIRNENPDLILLDVMMPGMDGFE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++K + EIP+I +TA K G +ISKP M IK + Sbjct: 69 VAERLKSEEFRCEIPIIFLTALDDTQSIVNGFKLGVGDFISKPFRKEELMVRIKHQL 125 >gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] Length = 246 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED++ + + GY Q +G+E LE+ + + + I+DI + + G+ Sbjct: 11 RILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREEIHLAIVDIMMPRMDGVT 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++E + PVI ++A + + D+ G + YI+KP + + + ++ Sbjct: 71 MVIRLREHYDF---PVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRR 126 >gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA] Length = 1334 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDNE L L Y + ++G E E ++ +PD+++ DI + ++SG+E Sbjct: 1085 KIIIVEDNEELRGLLARLFSRI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK + E IPVI +TA + + K G + Y++KP ++ + Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLV 1200 >gi|256785613|ref|ZP_05524044.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 221 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M++ED++ + G+ +G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA D + G + Y+ KP+ + I+ + Sbjct: 61 RRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114 >gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 226 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 6/124 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETS--GYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M+K +++V+D L R +E GY L +G EALE + PDV+I+D+ L + Sbjct: 1 MMK-ILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPD 58 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G E+ + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 59 TDGYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN 116 Query: 119 YIGE 122 Sbjct: 117 MARR 120 >gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 233 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59 + V+I++D++ L + +E A+ G E L L +++ ++I+DI + +I Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I+E IPVI +TA + D+ + G + Y++KP S++ M + Sbjct: 61 DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|167840679|ref|ZP_02467363.1| DNA-binding heavy metal response regulator [Burkholderia thailandensis MSMB43] Length = 230 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IVED + + +G++ T++G+ L + D+ I+D+ L G Sbjct: 2 KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ +TA D + + G + Y++KP + + ++ + Sbjct: 62 VVRELR---RTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117 >gi|167031315|ref|YP_001666546.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166857803|gb|ABY96210.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 240 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D++ +L D ++ +GY L +G + E + K +++++D+ L Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGED 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +Q++ L VI ++A D + G + Y++KP + IK + Sbjct: 61 GLSLCRQLQATPGLA---VIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ GY + NG +AL+ + D+ I+DI L ++ Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E PVI +TA GD+ + YI+KP + + +K + Sbjct: 61 GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQL 116 Query: 121 GE 122 + Sbjct: 117 RQ 118 >gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 265 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+ VED+++ + + +E G+ +G++ LE R PD+ ++D+ + + G+ Sbjct: 37 ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGV 96 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP +S+ + ++ + Sbjct: 97 SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153 >gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 847 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N L+E G+ +G++AL R+ + D+++MD+++ E+ G E Sbjct: 727 RILLAEDNRINSLFAAYLLEKLGHSVRAVASGVQALTALREDRFDLVLMDVRMPEMDGAE 786 Query: 64 ITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ +IP++A+TA+A++GD ER G + Y+SKP+ + I++ Sbjct: 787 ATRRIRAGEAGDPKIPIVALTAYALQGDRERFLAVGMDDYVSKPLDTAELERVIERV 843 >gi|310756717|gb|ADP20499.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129 >gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] Length = 225 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED + + SG++ NGM+ LA + + D+I++D+ L G Sbjct: 2 KILVIEDEARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVMLPGADGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K I++ S ++PV+ +TA D R + G + Y+ KP + + + I++ + ++ Sbjct: 62 VIKMIRQKS---DVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQS 118 >gi|265765934|ref|ZP_06093975.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] gi|263253602|gb|EEZ25067.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 2_1_16] Length = 1330 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + + Y NG EAL + +++ P++II DI + E+ G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ IK D E IP+I +TA + + K G + YI KP ++ I TI + Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLL 1185 >gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae CIP 101886] gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae CIP 101886] Length = 238 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ + ++P++ +TA + D + G + Y+ KP + + I+ + Sbjct: 66 ICRRLRQANN--QLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122 >gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 243 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60 + ++I ED+E +E + YI + +G AL+ + D++++D+ + ++ Sbjct: 8 QTILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLD 67 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++++ +P+I T D + G YI KP S + I+ + Sbjct: 68 GFQVCQRLRA---TSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSIL 124 Query: 121 GEA 123 A Sbjct: 125 RRA 127 >gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 685 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED+E+ + ++ Y +G LE A D++++D+ L + G+ Sbjct: 2 RILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ + P++ +TA ++ R G + Y++KP+ ++ ++ + Sbjct: 62 LCRELRDRNYT--TPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRR 118 Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ V+D+ + + L+E G+ + + + + PD++I+DI++ G+E Sbjct: 402 TLLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIE 461 Query: 64 ITKQIKEDSE----LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + ++ D Q +P++ +TA E + Y+ KPI + I Sbjct: 462 LCHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNR 519 Query: 120 IGEA 123 + A Sbjct: 520 LERA 523 >gi|184158146|ref|YP_001846485.1| response regulator [Acinetobacter baumannii ACICU] gi|332872696|ref|ZP_08440663.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209740|gb|ACC57138.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|310756669|gb|ADP20467.1| AdeR [Acinetobacter baumannii] gi|310756672|gb|ADP20469.1| AdeR [Acinetobacter baumannii] gi|310756675|gb|ADP20471.1| AdeR [Acinetobacter baumannii] gi|310756678|gb|ADP20473.1| AdeR [Acinetobacter baumannii] gi|310756681|gb|ADP20475.1| AdeR [Acinetobacter baumannii] gi|310756684|gb|ADP20477.1| AdeR [Acinetobacter baumannii] gi|310756687|gb|ADP20479.1| AdeR [Acinetobacter baumannii] gi|310756690|gb|ADP20481.1| AdeR [Acinetobacter baumannii] gi|310756693|gb|ADP20483.1| AdeR [Acinetobacter baumannii] gi|310756696|gb|ADP20485.1| AdeR [Acinetobacter baumannii] gi|310756699|gb|ADP20487.1| AdeR [Acinetobacter baumannii] gi|310756702|gb|ADP20489.1| AdeR [Acinetobacter baumannii] gi|310756705|gb|ADP20491.1| AdeR [Acinetobacter baumannii] gi|310756708|gb|ADP20493.1| AdeR [Acinetobacter baumannii] gi|310756714|gb|ADP20497.1| AdeR [Acinetobacter baumannii] gi|322508464|gb|ADX03918.1| AdeR [Acinetobacter baumannii 1656-2] gi|323518087|gb|ADX92468.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332739090|gb|EGJ69950.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 247 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129 >gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG E+LE+ + + I+DI + ++ G+E+ Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 66 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120 >gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A] gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A] Length = 229 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ + +++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM-ELTQYNLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K++ IP+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|149280656|ref|ZP_01886769.1| two-component system sensor histidine kinase/response regulator hybrid [Pedobacter sp. BAL39] gi|149228596|gb|EDM34002.1| two-component system sensor histidine kinase/response regulator hybrid [Pedobacter sp. BAL39] Length = 707 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 61/118 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED+ + GY L+ +NG +AL+ +H+ D++I D+ + ++G+ Sbjct: 447 QTVLVVEDDPSLLDFLSKSFTAEGYYTLRAKNGKDALKQLDKHQVDLVISDVMMPVMTGV 506 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + IK D +PV+ +TA E + + G +AYI+KP IK + Sbjct: 507 ELCRIIKNDIAYSHLPVVLLTAKTNTEAEIQGLESGADAYIAKPFKWKQLSLIIKNLL 564 >gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] Length = 233 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D L + ++ G+ NG +AL LA +KPD I+D+ + + G Sbjct: 8 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + P + +TA D G + Y++KP SL + ++ + Sbjct: 68 LLNKLRA--AGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124 >gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum SCRI1043] gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163] gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Dickeya dadantii 3937] gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium atrosepticum SCRI1043] gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Dickeya dadantii 3937] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581] Length = 725 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N ++ ++ G +G EALE D+I MD+Q+ ++ GL Sbjct: 476 ARLLVVEDNPVNQQVASAMLTKLGCRVSVACSGREALERVETECFDLIFMDVQMPDMDGL 535 Query: 63 EITKQIKEDSEL-QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+T++++E + E+P++A+TA GD+ R G Y+ KP+ + +++++ Sbjct: 536 EVTRRLRERGDWMAEVPIVAMTAGGPGGDQARCLAAGMNGYLVKPLFQDVLQAILRRHLQ 595 Query: 122 E 122 Sbjct: 596 R 596 >gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20] gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20] Length = 225 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++K+++VED + L + + + + EA Q+ + I+D+ L +I+G Sbjct: 1 MEKILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQNSFSLAILDVMLPDITG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K I++ P+I +TA + + D+ G + YI+KP + +K I Sbjct: 61 FDLCKIIRKKHHY---PIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E ++ GY +G LE A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNEDFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E+ + P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVARRVREE---KNTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032] gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus ATCC 35316] gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis z3032] gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus ATCC 35316] gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|307152389|ref|YP_003887773.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] gi|306982617|gb|ADN14498.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Cyanothece sp. PCC 7822] Length = 724 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L RD ++ GY G L A+ D+I++DI+L ++ G EI Sbjct: 13 ILIVDDLPDNLRLLRDTLKGQGYKVRSCTTGAMVLRGAKAAVTDLILLDIKLPDMDGYEI 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D + IPVI ++A D+ + G YI+KP + + + ++ Sbjct: 73 CRQLKADEQTASIPVIFLSALNNTFDKVQGFTFGGADYITKPFQVEEVLARVATHL 128 >gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1195 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 67/116 (57%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N ++ ++++ G +G ALEL DV++MD+ + + G E Sbjct: 854 RVLLVEDNRINQEVAAEILQQYGAQVTLADHGAAALELLTGPGFDVVLMDLHMPVMDGFE 913 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+E + +PVIA+TA ++ D ER G +++KPI+ + +K++ Sbjct: 914 ATRKIRELYDSATLPVIAMTAAVLQDDRERCTAAGMVDFVAKPINPLELVTVLKRF 969 >gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium] gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ GY + NG +AL+ + D+ I+DI L ++ Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E PVI +TA GD+ + YI+KP + + +K + Sbjct: 61 GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQL 116 Query: 121 GE 122 + Sbjct: 117 RQ 118 >gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1] gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 1099 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++VEDN++N L++ + NG+EA+E + + D+I MDIQ+ ++ G Sbjct: 859 AKILLVEDNKINQLFLSTLLKQKDIVVDIANNGLEAIEKVKTNNYDLIFMDIQMPQMDGY 918 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E TK+I++ + + IP+IA+TA A+ D+ + + G ++SKP++ + K+I Sbjct: 919 ETTKKIRKFN--KSIPIIALTAAALVHDKNKALEAGMNDHLSKPVNKDELFLVLSKFI 974 >gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED + +L +E GY + +G++ALE+ R D++I+DI L +++G Sbjct: 1 MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ K I+ DS ++PV+ +TA + G + Y+SKP L I+ + Sbjct: 61 LDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|167763302|ref|ZP_02435429.1| hypothetical protein BACSTE_01675 [Bacteroides stercoris ATCC 43183] gi|167698596|gb|EDS15175.1| hypothetical protein BACSTE_01675 [Bacteroides stercoris ATCC 43183] Length = 1310 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + D + NG EALE+ RQ PD+II DIQ+ +++G E Sbjct: 1053 TILVVDDNMELVDYLTDAMRPYFKDVRTAYNGEEALEMCRQWHPDIIISDIQMPKMNGYE 1112 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K++KE+ ++ PVI +TA + K G + Y++KP +S I + Sbjct: 1113 LCKRVKEELDISHTPVILLTARNDEASRIFGYKNGADTYLTKPFEISTLYTAIYNQL 1169 >gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 228 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + + ++ Y +NG + LELA D I++D+ L E++G Sbjct: 1 MSRILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDWDAILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+I +++++ ++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 LDICRRVRQ---VKNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|114332343|ref|YP_748565.1| response regulator receiver protein [Nitrosomonas eutropha C91] gi|114309357|gb|ABI60600.1| response regulator receiver protein [Nitrosomonas eutropha C91] Length = 121 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 63/117 (53%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D+ + + ++ +GY +G E + AR+ PD+++MD+ + I+G Sbjct: 4 RTILVVDDSPTDRHIISSILTQNGYQVGVAESGEEGVTKARETWPDLVLMDVVMPGINGY 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T+ + DS + IP+I T + D+ + G + YI+KP+ + ++ I + Sbjct: 64 QATRMLARDSATRHIPIILCTTKDQQTDKIWGLRQGAQDYITKPVMAAELLQKIARL 120 >gi|328874987|gb|EGG23352.1| histidine kinase [Dictyostelium fasciculatum] Length = 1142 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 71/123 (57%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+DN +N ++ +++++G A +GMEAL+ D+I +DI + ++ Sbjct: 1007 MEIRVLVVDDNGVNRQVALRMMQSAGCNADLASSGMEALDKMETTHYDIIFLDIMMPQMD 1066 Query: 61 GLEITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G ++TK+I+E + IP++A+TA A K DE + K G YI KP+ +S I Sbjct: 1067 GFQVTKEIREREVQKGVTRMIPIVAMTANAFKEDEAQCLKCGMNDYIPKPMKISQVRLMI 1126 Query: 117 KKY 119 K+ Sbjct: 1127 NKW 1129 Score = 42.4 bits (100), Expect = 0.022, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 17/131 (12%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +V+++E + + R E T + + A+++ Q + VIIMD Sbjct: 858 RVLLIEKKQSQRNILRQQFEAWNIQLETTTDDVSAMQMWNQKIKEDNPYSVIIMDSLTIG 917 Query: 59 ISGLEITKQIKEDSELQEIPVIAV--------TAFAMKGDEERIRKGGCEAYISKPISLS 110 L +++ I + S + PV + +A RK G ++KP+ +S Sbjct: 918 EGSLTLSQNITKKSHGKANPVRFLLLLPLKMRSAVLESE----ARKCGIGEIVTKPLRMS 973 Query: 111 IFMETIKKYIG 121 ++++ +G Sbjct: 974 KLLDSLVTILG 984 >gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] Length = 234 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED++ + + + GY Q NG E L + + K D+ I+DI + + Sbjct: 1 MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +T +++E E PVI ++A + + D+ G + Y++KP + M + + Sbjct: 61 GITMTMRLREKYEF---PVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC 9905] Length = 239 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQNN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 >gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 266 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+ VED+++ + + +E G+ +G++ LE R PD+ ++D+ + + G+ Sbjct: 37 ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGV 96 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP +S+ + ++ + Sbjct: 97 SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153 >gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 222 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ ED+ + + GY + +G +ALE A D+I++D+ L E+ GLE+ Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + PV+ +TA + D G + Y++KP L+ + ++ + Sbjct: 64 ARRIRAEGHG--TPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 231 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 MLK K+ I+ED++ + ++ G NG EAL+ + PD+II+D+ L +I Sbjct: 1 MLKQKIFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVIELNPDLIILDLMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG E+ + IKE +IP+I +TA + + ++ G + Y++KP S + +K Sbjct: 61 SGEELCQDIKEMV---DIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAI 117 Query: 120 IGE 122 + Sbjct: 118 LKR 120 >gi|326317438|ref|YP_004235110.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374274|gb|ADX46543.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 230 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+EDN + E GY+ R+G L +A QH D I++D+ L + G Sbjct: 1 MTRLLIIEDNPELVANLYGFFEPLGYVLDDARDGATGLRMATQHDYDAILLDLMLPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++E+ + +PV+ +TA D + G + Y+ KP SL I+ + Sbjct: 61 MALCRKLREEYQNP-VPVLMLTARDPVDDRVQGLAAGADDYLVKPFSLRELDARIQALVR 119 Query: 122 EA 123 A Sbjct: 120 RA 121 >gi|262371771|ref|ZP_06065050.1| twitching motility protein [Acinetobacter junii SH205] gi|262311796|gb|EEY92881.1| twitching motility protein [Acinetobacter junii SH205] Length = 120 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ FR+++ GY L+ NG + + +A+ PD+++MD+ + ++G Sbjct: 1 MARILIVDDSPTETFRFREILTKHGYEVLEATNGADGVTMAQAELPDLVLMDVVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+QI + + Q IPV+ V+ D ++ G Y++KPI ++ IK+ + Sbjct: 61 FQATRQISKGKDTQHIPVVIVSTKDQATDRVWGKRQGACDYLTKPIDEQQLIDVIKQLL 119 >gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 4/118 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED+ L ++T Y L NG EA+ A H PD+I++D+ L ++ Sbjct: 1 MNKTSILIVEDDRPIRNLIVTTLKTHEYKYLTAENGREAILEASSHNPDIILLDLGLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G+++ K+I+ +P+I ++A + D+ G + YI+KP S+ + I+ Sbjct: 61 EGVDVIKKIR---TWSNMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIR 115 >gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 250 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 ++++V+D +L R ++ GY +G L AR PD+I++D L + SG+ Sbjct: 13 RILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSGV 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I ++I+ P++ +T D + G + Y+ KP S+ M ++ Sbjct: 73 DICQRIRSSGVT--TPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRR 130 Query: 123 A 123 A Sbjct: 131 A 131 >gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum] Length = 232 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ GY + NG +AL+ D+ I+DI L +I Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIMLPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E PVI +TA GD+ + YI+KP + + +K + Sbjct: 61 GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSI-ADDYITKPFNPLEVVARVKAQL 116 Query: 121 GE 122 + Sbjct: 117 RQ 118 >gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88] gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88] Length = 222 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED + ++ + + SGY+ NG EA E+ D++I+DI L + G Sbjct: 2 KLLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPLMDGFS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K I+E ++ +I +TA + D G Y+ KP I+ + Sbjct: 62 VLKSIREHNKTVN--IIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRR 118 >gi|37519850|ref|NP_923227.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210841|dbj|BAC88222.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 230 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ ED+E + + Y+ +G A A + DV+++D+ L EI G Sbjct: 1 MVRILLAEDDERIAIPLAEDLTHQHYLVDVAADGKAAWHYATSYHYDVLLLDVMLPEIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++E E P++ +TA D G + Y+ KP SL ++ + Sbjct: 61 FALCRRLRE--AGYEQPILMLTALDRTTDRVAGLDSGADDYLVKPFSLEELGARVRALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|329956927|ref|ZP_08297495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] gi|328523684|gb|EGF50776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides clarus YIT 12056] Length = 868 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++++DN + L+ Y L +G + LA ++ PDVII D+ + + GLE Sbjct: 622 TVLVIDDNADIRHYVKALLSKE-YRVLDAADGAAGIRLAMKYVPDVIISDVMMPGMDGLE 680 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + +GG ++YISKP + + + I+ I Sbjct: 681 CCRRLKGELQTCHIPVILLTACSLDEQRIQGYEGGADSYISKPFNSQLLLSRIRNLI 737 >gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] Length = 1318 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 77/118 (65%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDNE+N ++ L++ + L NG +A+ + QH D+++MD+Q+ + G+ Sbjct: 991 QTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAINMLEQHPVDLVLMDMQMPVLDGV 1050 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+QI+ + + Q++P+IA+TA AM+ D +R G ++++KPI++ +T+ +++ Sbjct: 1051 SATEQIRRNPDWQQLPIIAMTANAMQSDVDRCIAAGMNSHLAKPINVRNLYQTLSQHL 1108 Score = 91.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 57/114 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+ ++V+DN+ + L+ + A NG EAL+ R + D++ +D + ++G+ Sbjct: 852 KRALVVDDNDSARNILVTLLNAMHFDAKAVSNGFEALDEIRNSQFDLLFVDWNMPGLNGI 911 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ + + + L+ VTA+ + ++ ++ I KP++ S ++ I Sbjct: 912 ELLQTAQNEQLLEHSKNFLVTAYGREISLDQASSKLVDSLIVKPVNPSNLLDAI 965 >gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 258 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED+ ++ + G+ + +G E ++L RQ+ D+I++D+ L +++G Sbjct: 29 MQQILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLMLPKLNG 88 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ K I+E S+ IPV+ ++A ++ G + YI+KP S+ +K I Sbjct: 89 MDLLKIIREQSK---IPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIR 145 Query: 122 EA 123 A Sbjct: 146 RA 147 >gi|304394995|ref|ZP_07376879.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304357248|gb|EFM21611.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 246 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ L + ++ +G + +G + D+I++D+ + GL Sbjct: 6 HILIVDDDREIRSLIAEYLKKNGLRTTEVADGRQMRSFLDNMPVDLIVLDVMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA + + D + G + Y+ KP + IK + Sbjct: 66 LCRELRS-GKHKGTPVLMLTARSEETDRIIGLEMGADDYLVKPFVPRELLARIKAVLRR 123 >gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 231 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ + G+ ++ +G +AL+L H+ D++I+D+ + + G Sbjct: 1 MQNILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEVDLMILDVMMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 61 IRTTLKVRE---TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113] Length = 1500 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 71/120 (59%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N ++ ++E G NG EAL+ ++++MD + ++ G Sbjct: 663 RRVLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEALDAMSGKVYELVLMDCHMPQMDGY 722 Query: 63 EITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+QI+ ++ +++P+IA+TA KGD ++ G Y+ KP+ LS+ + ++ ++G Sbjct: 723 EATRQIRIREAGKKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWLG 782 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 57/117 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D+ R+++E GY + NG +AL +Q PD+++MD + + G Sbjct: 926 RVLIVDDDRTMRMALRNVLEKGGYWIDEVINGSQALAFCKQQMPDLVLMDAVMPVLDGFN 985 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 QI++ + PV+ +TA E G YI KP+ S+ + + + + Sbjct: 986 ACAQIRDLPGSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLQKRVARLL 1042 Score = 73.6 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +++IVED+ ++ + + G NG +AL++ R D++++D + Sbjct: 520 RLLIVEDSTVSRRFLGQTFSSWGMYHGCAENGQQALKMLRSAVAEGRSYDLVLVDENTPD 579 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GLE+ +QI EDS + + +I + + G Y++KP+ S TI Sbjct: 580 LKGLELAQQIAEDSLIASVKIILM-GRQRHPVSDISPLSGVVNYVAKPVQQSSLYNTI 636 >gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] Length = 239 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED + RD + + + + R G EA+ ++ KPD II+D+ L + G+E Sbjct: 7 TVLIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSLPDCDGIE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++I+E+S + ++ ++A D+ G + Y++KP SLS + I ++ Sbjct: 67 ICRKIRENS---NVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 122 >gi|237711729|ref|ZP_04542210.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|265753147|ref|ZP_06088716.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|229454424|gb|EEO60145.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 9_1_42FAA] gi|263236333|gb|EEZ21828.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1343 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VEDNE + +E + NG EAL++ R + D++I DI + + Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNHIDLVISDIMMPVM 1135 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E+ K+IK D +L IPVI +TA + K G EAY+ KP S + I Sbjct: 1136 NGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILSL 1195 Query: 120 I 120 + Sbjct: 1196 L 1196 >gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 226 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I+ Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ ++++ D+ P + +TA D + G + Y+ KP + + I+ + Sbjct: 61 GLQVLQKLRADNHT--TPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] Length = 225 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 70/120 (58%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D KL +D +E G+I ++ +GMEA+++ ++K +II+D+ + + G Sbjct: 5 KILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENKDIALIILDVMMPRMDGW 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ ++++ L ++P+I +TA + DE + + G + YISKP S I + + + Sbjct: 65 QVCREVRA---LSQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKR 121 >gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia] gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + ++ G+ ++G E L + R+ DV I+D+ L ++SG+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++ E ++ PV+ +TA + D+ K G + Y+ KP + + + + A Sbjct: 62 LIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119 >gi|119487004|ref|ZP_01620876.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455933|gb|EAW37067.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 355 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+DNE+N L I GY + NG EALE+ R D++++DI + +++G ++ Sbjct: 10 VLIVDDNEVNRDLLARRITREGYQVMLASNGFEALEMMRSQPLDLVLLDIMMPQMNGYQV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D L+ IP+I ++A R + G E Y+SKP + + I + Sbjct: 70 LEAVKADQSLRYIPMIMISAVNDIESVVRCIELGAEDYLSKPFNPVLLRARINACL 125 >gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1223 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N KL ++E + NG+EA E ++ + D ++MD+Q+ + G E Sbjct: 1014 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1073 Query: 65 TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T +I+E D+ + PVIA+TA AM GD E+ + Y+SKP+ + ++TI + Sbjct: 1074 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1130 >gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum 3TCK] gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum 3TCK] Length = 239 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + I+ + Sbjct: 66 ICRRLRNANSV--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122 >gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 896 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|163938904|ref|YP_001643788.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163861101|gb|ABY42160.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 896 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ +E + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++D+ K+ D + GY + +G EA + Q +P V+I+DI + GLE+ Sbjct: 5 VLIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEAAKALEQLRPSVVILDIMMPGKDGLEV 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ +PVI +TA D + G + Y+ KP +L + I+ + Sbjct: 65 LADIR---RASTVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRR 119 >gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 234 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMD+ + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 >gi|146284264|ref|YP_001174417.1| type IV pilus response regulator PilH [Pseudomonas stutzeri A1501] gi|145572469|gb|ABP81575.1| type IV pilus response regulator PilH [Pseudomonas stutzeri A1501] gi|327482647|gb|AEA85957.1| type IV pilus response regulator PilH [Pseudomonas stutzeri DSM 4166] Length = 121 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 72/119 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ M ++E G++ L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARVLIVDDSPTEMYKLTAMLEKHGHVVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+Q+ +DSE IPVI VT + D+ ++ G + Y++KP+ + ++T+ + Sbjct: 61 FQATRQLTKDSETSHIPVIIVTTKDQETDKVWGKRQGAKDYLTKPVDEATLLKTLNAVL 119 >gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea str. race 4] Length = 690 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L RD + +GY NG+E + R P +I++DI L G++I Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 532 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ +P++ +TA + D G + YI KP S + +K + Sbjct: 533 CRELRS---FSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 587 >gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++++D + + R +E G + G ALE + PD+II+D+ L +++G Sbjct: 5 KRVLVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFERVNPDLIILDLMLPDMTGE 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI K I++ S +P+I +TA + G + Y++KP S M I + Sbjct: 65 EICKAIRKKSR---VPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRR 121 >gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 244 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-ISG 61 + +++VED R + GY G AL+ R PD+II+DI L I G Sbjct: 5 QHILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 LE+ ++I+ E +P++ +TA D G + Y+ KP + + + Sbjct: 65 LEVCRRIRAAGEG--MPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARV 117 >gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2] gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2] Length = 244 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 11 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 71 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 127 >gi|261407147|ref|YP_003243388.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283610|gb|ACX65581.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 3/112 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED ++ + ++ G+ L G EAL +AR +PD++++D L E S Sbjct: 1 MEPKLLIVEDEPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEKS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 G+++ ++I++ +I VTA + + D+ + G + Y++KP SL Sbjct: 61 GIDVCREIRQ---TSHCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLREL 109 >gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 239 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 309 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + D +E SG+ AL +G AL +A + PD+I++D + + G E Sbjct: 13 VLLVDDSPDALGFLTDALEQSGFSALIATSGQAALNIAERITPDIILLDAVMPVMDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K ++ + ++PVI +T R + G Y++KPI++ I+ ++ A Sbjct: 73 CRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131 >gi|186682208|ref|YP_001865404.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186464660|gb|ACC80461.1| response regulator receiver sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 371 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++ GY NG AL + PD+I++DI + ++G E+ Sbjct: 11 ILIVDDTLDNLRLLSAMLTEQGYEVRSVTNGSMALIGIQAQPPDLILLDITMPGMNGYEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + QEIPVI ++A D+ + G +I+KP + + ++ + Sbjct: 71 CQRLKSNPQTQEIPVIFISALNEVFDKVKAFSVGGVDFINKPFQIEEVVARMEHQL 126 >gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVED + + ++ GY NG E LE A + D+I++D+ L E+ Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++ + + ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|302539959|ref|ZP_07292301.1| sensor histidine kinase/response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457577|gb|EFL20670.1| sensor histidine kinase/response regulator [Streptomyces himastatinicus ATCC 53653] Length = 1149 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN DL+ + L +G AL+ A H D+++ D+ + + G Sbjct: 642 RLLVADDNADVRSYLGDLLGRE-HDVLLAADGRAALDTALAHPVDLVLTDVMMPRLDGFG 700 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + ++ D +P+I +TA A + R G + Y++KP S + + + Sbjct: 701 LVRALRADPRTTRLPIIMLTARAGEESTVRGLGAGADDYLAKPFSARQLLARVSANL 757 >gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1082 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D+ +L R ++ GY ++G EA+ +Q+ PD++I+DI + EI+G Sbjct: 875 KTILIVDDDPSIRELLRQELDAEGYNVRLAKDGREAISQIKQNPPDLVILDIIMPEINGF 934 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +K D E Q IP++ V+A R + G + Y++KP++ ++ +K Sbjct: 935 DVAAILKHDPETQHIPILVVSADDSVS---RGYQVGVDKYLTKPVAQETLLQEVKSLFAR 991 Score = 45.9 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 31/49 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVII 51 K+V+IV+ + +++ ++++T GYI QT+ E L R KPD++I Sbjct: 996 KRVLIVDRDISTLEILNEVLKTQGYIVSQTQTQEEFLPQIRAIKPDLVI 1044 >gi|288905481|ref|YP_003430703.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831564|ref|ZP_07464722.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288732207|emb|CBI13772.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426349|gb|EFM29463.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 226 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED ++ + GY +G A+++A ++ DV++MDI + SG+E Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +I +TA A D G + Y++KP SL + ++ Sbjct: 62 AVQEIRQTGNQSH--IIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118 >gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 220 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + R + G+ +G AL A D++++D+ L + GL+ Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PV+ VTA D + G + Y+ KP L ++ I Sbjct: 62 VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 >gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 62 VLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 909 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 69/123 (56%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E N L + + + NG A++ + + DV++MDIQ+ + G+ Sbjct: 780 RILLVEDAEDNCLLIQTYLRSEPVEIDVAENGQVAVDKFKTGQYDVVLMDIQMPVMDGIT 839 Query: 64 ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I++ + + PVIA+TA AM+ D ER + GC +++KPI +E + ++ Sbjct: 840 ATREIRQWERRKGRLQTPVIALTANAMREDMERSLEAGCNDHLTKPIKKKTLLEALYRFS 899 Query: 121 GEA 123 G + Sbjct: 900 GRS 902 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 68/124 (54%), Gaps = 5/124 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQE 58 +V+I++DNE N + R+ +++ G + ++ G E + A+ ++++D ++ E Sbjct: 635 RVLIIDDNETNRIILRETVKSWGVVPVEASGGAEGIAEMKRAKAQGLPYQLVLLDCRMPE 694 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G ++ ++I+ + E E V+ VT+ D +RI++ G AY+ KP+ + ++T+ Sbjct: 695 MDGFQVAERIQAEVEFCEATVLMVTSDNRNDDIQRIKQLGLAAYLVKPVKRNDLLKTVLS 754 Query: 119 YIGE 122 + Sbjct: 755 VLER 758 >gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666] gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 245 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I++D+ L R + G+ + + + + D+I++D+ + GL Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ ++ P+I +TA D + G + Y++KP + + I + Sbjct: 72 ICRRLRAAND--RTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRR 128 >gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae] gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + ++ G+ ++G E L + R+ DV I+D+ L ++SG+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++ E ++ PV+ +TA + D+ K G + Y+ KP + + + + A Sbjct: 62 LIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119 >gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Sinorhizobium meliloti 1021] gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ + D ++ +GY+ Q +G E L D +I+DI L E+ G+ Sbjct: 2 RILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + D + +PV+ +TA D+ G + Y++KP + + I+ I A Sbjct: 62 VLEKWRADGKT--MPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRA 119 >gi|148261169|ref|YP_001235296.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402850|gb|ABQ31377.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 262 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ +L +E + R+ EA ++++D+ L SG Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ + ++ +S+ +P+I +TA + D + G + Y++KP + + I+ + Sbjct: 87 IDFARWLRGESQ---VPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLR 143 Query: 122 E 122 Sbjct: 144 R 144 >gi|67920984|ref|ZP_00514503.1| GGDEF [Crocosphaera watsonii WH 8501] gi|67857101|gb|EAM52341.1| GGDEF [Crocosphaera watsonii WH 8501] Length = 595 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ +G+ +G AL A+ PD+I++D+++ +I G ++ Sbjct: 13 ILIVDDKPANLRILSTILTKAGHKVRAVTSGNMALITAKTMPPDIILLDVKMPDIDGYQV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K+ E EIP+I ++A ++ + + G YI KP + + +I Sbjct: 73 CQKLKQFPETAEIPIIFLSALQDVENKVKAFEAGGVDYIIKPFQFEEVLARVSIHI 128 >gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CDC1551A] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ A +G AL + D++++D+ L +SG Sbjct: 4 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 63 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 64 TDVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 120 Query: 122 E 122 Sbjct: 121 R 121 >gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 237 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++++D E +L + + GY+ + G E LE A H D+II+D+ L EI+ Sbjct: 1 MDKSVLVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPEIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ KQI++ P+I VTA D+ G YI+KP + + ++ + Sbjct: 61 GVEVLKQIRKVDN--HTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASM 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|306833709|ref|ZP_07466836.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424479|gb|EFM27618.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 226 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED ++ + GY +G A+++A ++ DV++MDI + SG+E Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMATENAYDVMVMDIMMPVKSGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I++ +I +TA A D G + Y++KP SL + ++ Sbjct: 62 AVQEIRQTGNQSH--IIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118 >gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella melaninogenica D18] gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella melaninogenica D18] Length = 878 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DN R ++ + Y + +G LELAR+ PD+++ DI + + GL Sbjct: 637 VLIIDDNVDIRTYLRSVL-SEKYNVSEAADGKAGLELARKIVPDIVLSDIMMPVMDGLAF 695 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K D + IPVI +TA ++ + G +AY+SKP SL + I I Sbjct: 696 CQQLKTDKAISHIPVILLTARSLDEQRAEGYEHGADAYLSKPFSLRLLFSRIDNLI 751 >gi|260222272|emb|CBA31670.1| Response regulator mprA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 248 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++IVED+EL + +G+ +G +A L + D +++D+ L + G Sbjct: 16 MAHLLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLESTRFDGVVLDLGLPVVDG 75 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + + I++ L +PV+ +TA D + G + Y++KP +++ + ++ + Sbjct: 76 IAVLQWIRQ--RLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLR 133 Query: 122 EA 123 + Sbjct: 134 RS 135 >gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 231 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++I++D + + + ++ GY ++ +G EAL + + +P V I+DI L IS Sbjct: 1 MNNKILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEEQPAVAILDIMLPGIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ S + +I V+A + D+ + G + YI KP + + +K + Sbjct: 61 GFEVCEKIRTKSPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|119898694|ref|YP_933907.1| two-component response regulator [Azoarcus sp. BH72] gi|119671107|emb|CAL95020.1| probable two-component response regulator [Azoarcus sp. BH72] Length = 301 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 67/125 (53%), Gaps = 5/125 (4%) Query: 1 ML---KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQL 56 M+ ++++V+D +N KL +L+E + + ++G +ALE + D+I++D+ + Sbjct: 1 MMVERHRILVVDDERINRKLLSELLEEH-HDVVIAKSGEQALERVQADSAVDLILLDVVM 59 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +SG ++ +++K +++PVI +T+ DEE G YI+KP I + Sbjct: 60 PGMSGHDVLRRLKASDATKDVPVIFITSLNSVDDEEIGLDLGAADYITKPFHPGIVRLRV 119 Query: 117 KKYIG 121 + ++ Sbjct: 120 ENHLR 124 >gi|170728288|ref|YP_001762314.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813635|gb|ACA88219.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 221 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++IVED+E + + SGY +G E + + ++PD I++DI L +S Sbjct: 1 MTNKILIVEDDEKIATILAKYAQGSGYNHHIINDGAEVISWVKANEPDAILLDIMLPNVS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ KQI+E E+PV+ TA + D + G + YI KP S M IK + Sbjct: 61 GTELCKQIRE---FSEVPVLMATAKVEEIDRLLGLEIGADDYICKPFSPKEVMARIKTIL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + R +E G++ + G + L A + DVI++DI L ++G E Sbjct: 2 RVLVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ P++ +TA + D+ G + Y+ KP S + + ++ + Sbjct: 62 IVRALRAKQIW--TPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRR 118 >gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis TXDOH] gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis Bt4] gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R + +G+IA +G+ L A + D+II+D+ L G Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + + PV+ +TA GD + + G + Y+ KP + ++ + Sbjct: 62 VLERLRRE---RSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117 >gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] Length = 280 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 59 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 118 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 119 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 174 >gi|332519639|ref|ZP_08396103.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044198|gb|EGI80392.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 234 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + RD + + Y + +NGME E ++ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGTVLRDYLMMNDYEVVHAKNGMEGFEKFKKDDFDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E + ++P+I +TA AMK D + K G + Y++KP + + IK + Sbjct: 66 TLAKEIREKN--ADVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQR 123 >gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986] gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986] Length = 250 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ + + + G+ + +G EA++L +HK D++I+DI + + G+ Sbjct: 24 ILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKVDLLIIDIMMPVLDGIRA 83 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T QI+E+S IP+I ++A + D+ G + Y++KP + + +K + Sbjct: 84 TMQIRENS---TIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 138 >gi|282890431|ref|ZP_06298958.1| hypothetical protein pah_c017o014 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499685|gb|EFB41977.1| hypothetical protein pah_c017o014 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++ED E L + E SGY + +G+ + KPD++I+DI + + Sbjct: 1 MQKPTLLLIEDEEDIAALIKLQAEISGYKIITEVDGLNGFRAIEREKPDLVILDIMIPGM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SGL++ ++IK +EL+ IPVI ++A + + D + G + Y++KP S + I+ Sbjct: 61 SGLDVCRKIKSSAELKSIPVIMISAKSEELDVVLGLELGADDYVTKPFSPKVLFSRIRAV 120 Query: 120 IGE 122 + Sbjct: 121 LRR 123 >gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + +E SGY +G E L LA++ + DVI++D+ L I G Sbjct: 2 RILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVMLPSIDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ Q PV+ +TA D + + G + Y+ KP + + ++ Sbjct: 62 VLKTLRA---TQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARR 117 >gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED+E GY+ +G E L A D +++D L + Sbjct: 1 MSRRLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + K ++ + PV+ +TA + + + + G + Y+ KP S I+ + Sbjct: 61 GLAVIKSMRA--AGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|189426569|ref|YP_001953746.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter lovleyi SZ] gi|189422828|gb|ACD97226.1| response regulator receiver modulated metal dependent phosphohydrolase [Geobacter lovleyi SZ] Length = 363 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+DN N++L + + Y G +ALE+AR D+I++DI + ++G + Sbjct: 12 TVLLVDDNPENIRLLDEALRDE-YTIKVATRGEKALEIARSMPVDIILLDIMMPGMNGFD 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + IPVI V+A DE G YI+KP+ + ++ ++ Sbjct: 71 TCRRLKADPATRGIPVIFVSARGEVEDESVGFACGGVDYITKPVRFPVVRARLRTHL 127 >gi|167948903|ref|ZP_02535977.1| two-component system sensor protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 345 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 72/120 (60%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN +NM + + +++ +G + +G EAL++ + DV++MD Q+ + G E Sbjct: 70 HVLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMVGEENFDVVLMDCQMPRMDGYE 129 Query: 64 ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ E + L +P+IA+TA AM GD ER G + Y++KP+ S +++++ Sbjct: 130 STEAIRNREEMNGLSRLPIIAMTANAMAGDRERCLAAGMDDYLAKPVKPSALENMLRQWL 189 >gi|124008550|ref|ZP_01693242.1| transcriptional regulatory protein RprY [Microscilla marina ATCC 23134] gi|123985924|gb|EAY25781.1| transcriptional regulatory protein RprY [Microscilla marina ATCC 23134] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 2/123 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++ VED+ + +D +E Y NG ALE +Q D+ + D+ L ++ Sbjct: 1 MKAHILFVEDDASLALVTKDSLELRDYRVTHCANGQLALEQFQQDNFDLCLFDVMLPQMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++ + EIP+I +TA AM+ D+ K G + YI+KP S+ + I+ ++ Sbjct: 61 GFTLAEKVRTLNH--EIPIIFLTAKAMQEDKIAGLKLGADDYITKPFSIEEVVLKIEVFL 118 Query: 121 GEA 123 + Sbjct: 119 KRS 121 >gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4] gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED E L+ G+ +G AL + D++++D+ L +SG Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLMLPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ KQ++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 61 TDVCKQLRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I GL+ Sbjct: 2 RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 62 VLQRLRADNNT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|46201757|ref|ZP_00054434.2| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum MS-1] Length = 514 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N ++ L+ G+ +G EA+E R D+++MD+Q+ E+ GL+ Sbjct: 267 RILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRARPYDLVLMDVQMPEMDGLQ 326 Query: 64 ITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T I+ S IP++A+TA AM+GD++ G ++YISKPI M+ + Y Sbjct: 327 ATNAIRALSGPPSRIPIVAMTANAMRGDDKMCLDAGMDSYISKPIDRQKLMDVLAHY 383 Score = 84.8 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 18/131 (13%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQ 57 ++V++V+D+ +N + + G A+ + ALE R Q + I+D ++ Sbjct: 121 RRVLVVDDSPINRDVLERQLRGFGIHAVSCPDATSALEEIRRAAATQEPWEAAILDARMP 180 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGG-----CEAYISKPISLSIF 112 ISG+++ I+ + L + ++ ++ + G +A+I KP+ Sbjct: 181 GISGMDLAGLIRNEPALGGLKLVIASS--------QGLAAGDSPASADAFIHKPLRRQTI 232 Query: 113 METIKKYIGEA 123 + + + +G A Sbjct: 233 LGILARVLGIA 243 >gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 974 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ EDN +N L++ G + NG EAL+ D+++MD+Q+ E+ G++ Sbjct: 718 RVLLAEDNLVNQHYASILLKRQGCLTTTAANGREALDKLAAEPFDLVLMDVQMPEMDGVK 777 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ D + +P++A+TA AM+GD ER + G + Y+SKPI + ++ + Sbjct: 778 ATRIIRNDPAYAKVRNVPIVAMTAHAMQGDRERFLESGMDEYVSKPIDQDDLFKVMRAAL 837 Query: 121 GE 122 + Sbjct: 838 AK 839 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED+ L+ SG + +EAL LA ++ P V++ DI + + G E+ Sbjct: 7 ILIVEDSPTQALRLEQLLLGSGLSVRVAASAVEALALADENPPAVVVSDILMPGMDGYEL 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY----- 119 ++I+ ++L IPVI +T A D + K G +++KP + + +++ Sbjct: 67 CRRIRASTKLAHIPVILLTTLADPEDILKGLKSGATNFVTKPYDPDLLLGRVRQLMSELD 126 Query: 120 IGEA 123 + A Sbjct: 127 LRRA 130 >gi|322804938|emb|CBZ02497.1| putative two component response regulator transcriptional regulatory protein [Clostridium botulinum H04402 065] Length = 217 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKV++VED +L +E +GY ++ +G A+ D+I++DI L ++ G Sbjct: 1 MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYLDIILLDIMLPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I +I + IPVI VTA D + K G + YI+KP + I+ + Sbjct: 61 FSIISKI----SGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 236 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++VED + + + ++ GY NG E LE+A + + ++DI + + Sbjct: 1 MDHTILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRETIHLAVVDIMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ +T +I++ + P+I ++A + D+ G + YI+KP + ++ + Sbjct: 61 GITMTMEIRKKYDF---PIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 238 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D + ++ +E +G A +G+ AL+L R PDV+++D+ L + G+E+ Sbjct: 12 VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEV 71 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ + V+ +TA A + D+ G + Y++KP S + I+ + Sbjct: 72 CRQLR---TFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRR 126 >gi|300864563|ref|ZP_07109425.1| hypothetical protein OSCI_960001 [Oscillatoria sp. PCC 6506] gi|300337436|emb|CBN54573.1| hypothetical protein OSCI_960001 [Oscillatoria sp. PCC 6506] Length = 391 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 1/116 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ ++E GY A NG+EALE + D ++MD+Q+ E+ GLE Sbjct: 136 RILLAEDNLVNQKVALRILERLGYRADVANNGLEALEALQHKTYDTVLMDVQMPEMDGLE 195 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + I + +Q P +IA+TA AM+GD E+ + G + YISKPI + ++ + + Sbjct: 196 TARYINQHWPIQRRPRIIAMTANAMQGDREKCLEAGMDDYISKPIQFTELIQALSQ 251 Score = 99.4 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 9/117 (7%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGLEI 64 +IV+DN N ++ R + G I+ + NG EAL + D+ I+D+Q+ ++ GL + Sbjct: 2 LIVDDNATNRQILRLQTQKWGMISQEAANGTEALNCLSQSELYDLAILDVQMPQMDGLTL 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEA-YISKPISLSIFMETIKKYI 120 +I++ ++ +P++ +T+ G A ++KPI S E + + Sbjct: 62 ASEIQKSDRIRRMPIVLLTS-------INCMVGSANAVCLTKPIKPSQLYEVLLSVL 111 >gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Query: 7 IVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITK 66 IV+D + GY +G L L R PD +++D+ + + GLE+ + Sbjct: 5 IVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLGGLEVCR 64 Query: 67 QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ + +PV+ +TA D G + Y+ KP +L + ++ + Sbjct: 65 VLRAEGNT--VPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRR 118 >gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ L + SGY G +AL + +PD++++D+ L ++ G E Sbjct: 12 RILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPDLDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+ ++ PV+ +TA GD G + Y+ KP S+ + I+ + Sbjct: 72 VTRSLRAVGV--RTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRR 128 >gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] Length = 235 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IVED++ + +++ GY Q +G E LE+ + + I+D+ + + G Sbjct: 3 MNHVLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVMMPRMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + +++E + PVI ++A + + D+ G + Y++KP + + + + Sbjct: 63 ITMVVRLREKHDF---PVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] Length = 1771 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 66/108 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VEDNE+N ++ + +E G NG ALE D+++MD Q+ + G Sbjct: 1432 KRILLVEDNEMNQEVATEFLEQVGITLSIADNGQIALEKLATQTFDLVLMDCQMPVMDGY 1491 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLS 110 + T+ +++ EL ++PVIA+TA AM GD+E + G +I+KPI +S Sbjct: 1492 QATQALRKIPELSDLPVIAMTANAMAGDKEMCLRVGMNDHIAKPIEVS 1539 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + R +E+ G+ ++G +A+E + + V ++D + E++GLE Sbjct: 1291 RILVADDNATARDILRTTLESMGFEVDTVKSGAQAVERCKTTQYPVALIDWLMPEMNGLE 1350 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I +SE ++ V+A A + I G YI+KPIS S ++ I +G+ Sbjct: 1351 TSAAIIANSETPP-KILIVSAHANTELTDHIEGSGIAGYITKPISASRLLDGIMSSLGK 1408 >gi|254413082|ref|ZP_05026854.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180246|gb|EDX75238.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 435 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 59/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D +++L + GY T NG AL A+ PD+I++DI++ +++G ++ Sbjct: 13 ILIVDDTADSLRLLEAALTRYGYEVRSTVNGSMALMAAKAVAPDLILLDIKMPDMNGYDV 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +K ++IP+I ++A D+ + G YI+KP + + + Sbjct: 73 CSALKASPVTRDIPIIFISALDEVFDKVKAFALGGADYITKPFQFEEVLARVDHQL 128 >gi|157803455|ref|YP_001492004.1| response regulator PleD [Rickettsia canadensis str. McKiel] gi|157784718|gb|ABV73219.1| response regulator PleD [Rickettsia canadensis str. McKiel] Length = 450 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 65/118 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D E N+KL + Y L +G EAL + + K D+I++D+ + E+ G Sbjct: 1 MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILTKEKIDIILLDVMMSEMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E+ K+IK + E IPV+ VTA + D + + G + +++KPI+ + +K Sbjct: 61 FEVCKRIKTNLETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSL 118 Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++++ D+ + K R ++ N E L++ ++ PD++I+ L+ L Sbjct: 152 KKILLINDDVVQAKNIRQMLLKITASIKVISNSDE-LDIINEYTPDLVIISSTLENDDPL 210 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I+ ++ +++ + +I + + G Y PI S + I+ + Sbjct: 211 RISVILRRKAKISGVVIILQIDEDGMPLVVKGVELGINDYFVYPIEESELLARIRTQLRR 270 >gi|22023765|gb|AAM89215.1|AF462151_1 hybrid histidine kinase [Tritrichomonas foetus] Length = 1547 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++VEDN+ N + + +++ G NG EA++ Q + D+I MD Q+ + G Sbjct: 1425 TQKILVVEDNKTNQFVMKKILQNIGCPMRIAENGKEAIDALEQEEFDLIFMDCQMPVLDG 1484 Query: 62 LEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +E TK I+ D IP+IA+TA A++GDEE RK G +AY+SKP+ + I ++ Sbjct: 1485 IEATKIIRSCDKNYSSIPIIALTASAVEGDEETCRKAGMDAYLSKPVRIQQIKNIIAQF 1543 >gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis TXDOH] gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis Bt4] gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IVED + + +G++ T++G+ L + D+ I+D+ L G Sbjct: 2 KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ PV+ +TA D + + G + Y++KP + + ++ + Sbjct: 62 VVRELR---RTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117 >gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 245 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED++ + + G++ +G A++ A +PD++I+DI L GL Sbjct: 19 RRVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 79 EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135 >gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 223 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED + + D + +GY G + R ++PD+I++D+ L G Sbjct: 1 MQRILVVEDEQRLASILADYLHAAGYSTHCLGEGRGVVAWVRGNRPDLILLDLMLPGRDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +EI K+I+ +P+I VTA + D + G + Y+ KP S + +K + Sbjct: 61 MEICKEIR---TFSTVPIIMVTARIEEIDRLLGLELGADDYVCKPFSPREVVARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|312960750|ref|ZP_07775255.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas fluorescens WH6] gi|311284408|gb|EFQ62984.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas fluorescens WH6] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 4/123 (3%) Query: 1 ML-KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K+++IVED+ + + + G+ +G L+L + +PD+I++D+ L + Sbjct: 1 MSGKRILIVEDDADSANILEAYLRRDGFEVALAEDGQRGLDLHKSWRPDLILLDVMLPRL 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG E+ ++ S + PVI VTA + ++ + G + Y+ KP S + + Sbjct: 61 SGTEVLSAVRRSS---DTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPREVVARVHAV 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|312897331|ref|ZP_07756757.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310621549|gb|EFQ05083.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + ++ SGY +G++A+E A ++ D ++ DI + G+ Sbjct: 2 RLLLAEDEKELSTAVATILNASGYETDIVSDGVQAVEAAERNSYDCMVFDIMMPGKDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+E ++ PVI +TA + D G + Y++KP ++ + I+ Sbjct: 62 ALSEIREKGDV--TPVIMLTAKSEVDDRITGLDAGADDYLTKPFAVKELLARIRSVTRR 118 >gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 227 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IV+D + L ++ S +G EA ++ + D++++D+ + G Sbjct: 1 MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+ S +P+I +TA D+ + G + YI KP + + I + Sbjct: 61 FVVCQSIRAMS---NVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|237718511|ref|ZP_04548992.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229452218|gb|EEO58009.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1333 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED+E + + + NG EA+EL + ++++ DI + E+ G+ Sbjct: 1078 HVLIVEDDEEINEYLCREL-AEDFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDGIS 1136 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K IK+ + IP+I +TA + D G +AYI+KP SL+I TI I Sbjct: 1137 LCKHIKQHLQFNHIPIILLTAKTRETDNITGLAVGADAYITKPFSLNILRSTILSLI 1193 >gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] Length = 214 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED++ +L + + T Y + +G+E ++ + D+I++D+ + ++G E+ K Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ S IP+I +TA + D+ + G + YI+KP S + M ++ + + Sbjct: 62 IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114 >gi|225388689|ref|ZP_03758413.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme DSM 15981] gi|225045287|gb|EEG55533.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme DSM 15981] Length = 219 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E+ + + +GY +G EA L + D+I++DI L G E Sbjct: 2 RILVVEDEEMIADIISAGLTRTGYQCESVYDGAEAAGLLEAKRYDLILLDIMLPGADGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + IK PVI +TA D+ R K G + YI+KP L+ ++ + Sbjct: 62 LMEYIKN----YNTPVIFITARTRLEDKVRGFKLGADDYITKPFELAELTARVEAVLRR 116 >gi|218963158|gb|ACL13308.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|218264787|ref|ZP_03478491.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii DSM 18315] gi|218221793|gb|EEC94443.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii DSM 18315] Length = 548 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++++D++ + + Y L+ RNG + +++A + +PD+I+ D+ + G Sbjct: 301 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGIDVALKEEPDLILCDVMMPVKDGY 359 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++IK D ++ + PV+ +TA D + G + YI+KP + I I + Sbjct: 360 ETCREIKSDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLM 417 >gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806] gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 218 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 60/119 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D+ +D +E +GY + NG+EAL L + P +++ DI++ + G + Sbjct: 5 ILIADDDPGIRLAVKDYLELAGYSVVAASNGLEALNLLDTYHPHLLVSDIKMPRLDGYSL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ E + +PVI +T + R + GC+ Y+ KP + I+ + + Sbjct: 65 VTKVRQQPEFRLLPVIFLTERGSTEERIRGYQVGCDIYLPKPFEMEELKAVIRNLLERS 123 >gi|160882542|ref|ZP_02063545.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483] gi|156112123|gb|EDO13868.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483] Length = 1333 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVED+E + + + NG EA+EL + ++++ DI + E+ G+ Sbjct: 1078 HVLIVEDDEEINEYLCREL-AEDFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDGIS 1136 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + K IK+ + IP+I +TA + D G +AYI+KP SL+I TI I Sbjct: 1137 LCKHIKQHLQFNHIPIILLTAKTRETDNITGLAVGADAYITKPFSLNILRSTILSLI 1193 >gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED + + +E Y NG E L++A D+I++D+ L + GL Sbjct: 2 KVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E PV+ +TA D G + Y++KP + + + ++ + + Sbjct: 62 VVRELRERKN--STPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRS 119 >gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata HTCC2501] gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata HTCC2501] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++++ED ++ SGY +G + LE+ + D++I+DI L + Sbjct: 1 MGNRILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEMLQDGDFDLVILDIVLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ + I+ + ++P++ +TA + R G + Y+ KP ++ Sbjct: 61 GREVARTIR--GQGLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKELEARVRALS 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 225 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + +E SG+ ++G E L LA++ + DVI++D+ L + G Sbjct: 2 RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPVLDGWA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+++ + PV+ +TA D + G + Y+ KP + + I+ Sbjct: 62 VLKRLR---DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARR 117 >gi|325922833|ref|ZP_08184560.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546690|gb|EGD17817.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 238 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+IV+D + + GY LQ E L + +++++DI L + G Sbjct: 11 ARVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLAVLAGQGAELVVLDIGLPDRDGH 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I++ +PVI +T A + ++ G Y++KP + M I+ + + Sbjct: 71 EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQ 127 Query: 123 A 123 A Sbjct: 128 A 128 >gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D KL R + + GY + N A+EL KPD++++D+ L +SG E Sbjct: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGLPGMSGHE 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++ ++D +IPV+ +++ + + + G + Y++KP ++ + I+ + Sbjct: 67 LLRKWRDDGL--DIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALR 122 >gi|312889259|ref|ZP_07748813.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311298136|gb|EFQ75251.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 228 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++ ED+ + + +E +GY NG EAL + D+ ++D+ + + Sbjct: 1 MNKHILLAEDDPDFGGILKQYLELAGYQVSWKMNGAEALTFFKTESADICVLDVMMPVMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I IP I +TA K D + G + Y+ KP + + +K + Sbjct: 61 GFTLAEKI--TGIHPGIPFIFLTARNQKEDRLKGLGLGADDYVVKPFEVEELVLRLKNIL 118 Query: 121 GE 122 Sbjct: 119 KR 120 >gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 226 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ +D+ ++KL ++E +GY L+ + L+ QH PD+I++D+ + + +G +I Sbjct: 3 ILVADDDIPSVKLTSFVLEEAGYRVLKVYDAQSVLQAVDQHNPDLILLDVMMPKSNGFDI 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ +S ++P+I ++ + D + G + Y+ KP S + ++ + Sbjct: 63 CRQIRRNS---DVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRR 117 >gi|306841742|ref|ZP_07474428.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] gi|306288147|gb|EFM59534.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2] Length = 461 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 64/121 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D + N+KL + + Y + +G EA+E+ + D++++D+ + + Sbjct: 1 MTARILVVDDVDSNVKLLEARLLSEYYEVVPAYSGAEAIEICLDGQIDIVLLDVLMPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++K + IPVI +T D+ R + G E ++SKP++ + +K Sbjct: 61 GFEVCRRLKANPHTANIPVIMITCLTSPEDKVRGLEAGAEDFLSKPVNDLELLSRLKSLT 120 Query: 121 G 121 Sbjct: 121 R 121 Score = 86.3 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++V+++EL R ++ Y + AL A + D II+ L Sbjct: 160 ARILVVDEDELAAARLRHIL-DENYRVDVASDAETALIRAIETDYDTIIVSASFTYYDPL 218 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ Q++ + IP+I + R + G Y+ +P+ ++ I Sbjct: 219 KLCTQLRTIQRTRLIPIILMVWEDEGALVVRALELGVNDYLMRPLEKIELFARLRTQIKR 278 >gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4] Length = 1499 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN +N ++ +++ G NG EAL+L + D+++MD + + G E Sbjct: 664 ILVVEDNRVNQQVAVGMLKRFGCHVEVAANGQEALDLVARKSYDLVLMDCHMPRMDGYEA 723 Query: 65 TKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++I+ + ++P+IA+TA +GD ++ G Y+ KP+ L++ + ++ ++ Sbjct: 724 TRRIRSLEAGKVQVPIIAMTANVREGDSDKCLSVGMNDYLPKPLRLNLLRDKLQYWL 780 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 59/117 (50%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IV+D+ R+++E GY + NG +AL R+ PD+++MD + + G + Sbjct: 926 RVLIVDDDRAMRMALRNVLEEGGYRIEEAVNGEQALAFCRRQMPDLVLMDAVMPLLDGFK 985 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 QI++ + PV+ +TA + E+ G YI KP+ + + + + + Sbjct: 986 ACTQIRDMPGSRHTPVLIITALDDEHSIEQAFSAGATDYIPKPLHFGVLRQRVARLL 1042 Score = 75.9 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 +++IV+D+ ++ + G NG +AL++ R D+ ++D + Sbjct: 519 RLLIVDDSTVSRRFLEQTFSFWGMYHGSAENGQQALKMLRSAAIQGRAYDLALIDENMPG 578 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+++ +I E ++ + +I + + + G YI+KP+ S I Sbjct: 579 MEGVDLVHRIAESPQISSVKIILM-GRQHQPTVDVSHLPGVVNYIAKPVQQSPLYNAI 635 >gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis 3_1_12] gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ ++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NISSYHLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + ++P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MANILKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|229137795|ref|ZP_04266397.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26] gi|228645652|gb|EEL01884.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26] Length = 883 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 763 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 822 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 823 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881 >gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ + G+ ++ +G E LE H D++I+D+ + + G Sbjct: 1 MQTILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESHDADLLIIDVMMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E+S IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 61 IRTTLKVRENS---SIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1065 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISGL 62 +V++V+D +N ++ ++ + G + NG++A+ L R + +++++DI + +SG Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ ++E L ++P++ +TA D + G Y++KP + K I Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDKRELISRAKNLI 811 >gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED + + +++ + Y NG EA + D +I+D+ + ++ G Sbjct: 2 RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVYDGVILDVMMPKMDGFT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+ SE ++PVI +TA + D+ G + Y++KP + I+ Sbjct: 62 VLSKIR--SEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRR 118 >gi|153003522|ref|YP_001377847.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152027095|gb|ABS24863.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 123 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ + + R ++ Y + ++G E +E A +PD+I+MD+ + + G Sbjct: 4 KKILLVDDSSTVLLMERMILSKYAYDVVTAKDGAEGVEKAIAERPDLILMDVVMPRMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+E + +EIPVI VT E GC Y++KPI+ + ++ +G+ Sbjct: 64 EACRRIREQEDTREIPVIMVTTRGELASVESGYASGCNDYVTKPINGLELLAKVRSCLGQ 123 >gi|152995045|ref|YP_001339880.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835969|gb|ABR69945.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 244 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I ED ++ +E SG L NG++ALEL +HKPD++++D+Q+ ++ G Sbjct: 16 ATILIAEDELDIAEILIAYLEKSGMRTLHANNGLQALELHLEHKPDIVLLDVQMPKLDGW 75 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +I+ P+I +TA D+ + G + Y+ KP + + + + + Sbjct: 76 RVLSEIRHRG---NTPIIMLTAMDQDIDKLMGLRIGADDYVVKPFNPAEVVARTQAVLRR 132 >gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 914 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 68/120 (56%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ ED+ LN ++ ++L+ G NG EA+E+ARQ ++MDIQ+ + G Sbjct: 560 ARVLVAEDHPLNREIAQELLTAVGIEVDMANNGREAVEMARQGAYQGVLMDIQMPVLDGY 619 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T I+ +E+P+IA+TA A++ + ++ + ++SKP+ + +T+ +++ Sbjct: 620 RATAAIRALPGGEELPIIAMTAHALEEERKKSLEAVMNDHVSKPVDAEVLYQTLARWLKR 679 >gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 236 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 4/118 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I+ED+ + R L+E+ Y + NG + LE+ D++I+DI + +SGL Sbjct: 6 VLIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT-DLVILDIMMPGMSGLRT 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + +PV+ +TA A + D+ G + Y+ KP S + + +K + Sbjct: 65 CEEIR---RVSNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKALLRR 119 >gi|212695249|ref|ZP_03303377.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855] gi|237725832|ref|ZP_04556313.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D4] gi|212662159|gb|EEB22733.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855] gi|229435640|gb|EEO45717.1| two-component system sensor histidine kinase/response regulator [Bacteroides dorei 5_1_36/D4] Length = 1343 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 +K +++VEDNE + +E + NG EAL++ R + D++I DI + + Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNHIDLVISDIMMPVM 1135 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +G E+ K+IK D +L IPVI +TA + K G EAY+ KP S + I Sbjct: 1136 NGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILSL 1195 Query: 120 I 120 + Sbjct: 1196 L 1196 >gi|254458073|ref|ZP_05071500.1| response regulator CheB [Campylobacterales bacterium GD 1] gi|207085466|gb|EDZ62751.1| response regulator CheB [Campylobacterales bacterium GD 1] Length = 348 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+K+ ++++ + Y NG +AL++ + D+I++DI + +++G ++ Sbjct: 7 ILIVDDVSDNIKVAMNILKENNYNFSFAINGNQALDIVKTKDFDLILLDIMMPDLNGFDV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K +S + IP+I +TA A + G YI+KP S + + ++ Sbjct: 67 IKALKNNSSTKNIPIIFLTAKADIDSITEGFELGAVDYITKPFHPSELISRVSTHL 122 >gi|171058978|ref|YP_001791327.1| response regulator receiver sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gi|170776423|gb|ACB34562.1| response regulator receiver sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 394 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 64/122 (52%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K V++++D+ + + R+++E +G+ ++ +G LE A+Q PD+++ DI + + Sbjct: 1 MNKTVLVIDDSSVLRDIMREVLEDAGFNVIEAPHGQLGLERAQQLAPDIVLCDINMPVLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + L+ +P++ VTA A K R + G + ++SKP + + + + Sbjct: 61 GYGFVQAARAHEHLRTVPILMVTAMAEKKSMRRAMEAGADDFLSKPFTPEELVSAVTGQL 120 Query: 121 GE 122 Sbjct: 121 AR 122 >gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704] gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704] Length = 236 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query: 1 MLKK----VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M+ +++VED+ L +E+ Y + NG +A+ A PD+I+MD+ L Sbjct: 1 MMTNGKPYILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAVMSAASGSPDIILMDLGL 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 ++ G+++ K+I+ S P+I ++A + D+ G + Y++KP S+ + + Sbjct: 61 PDMDGVDVIKKIRTWSVA---PIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARL 117 Query: 117 KKYIGE 122 + + Sbjct: 118 RSTLRR 123 >gi|162456089|ref|YP_001618456.1| hypothetical protein sce7807 [Sorangium cellulosum 'So ce 56'] gi|161166671|emb|CAN97976.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 1444 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEIS 60 + V++++D+ N+ L+E G + N +E+ R+ D+++MDI + E+ Sbjct: 1322 RSVLVIDDDARNVFAITSLLERRGAHVVLAENARHGIEILREADSPIDIVLMDIMMPELD 1381 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E T++I+ D E+P+IAVTA AM D ++ G +++KP+ M I ++ Sbjct: 1382 GYEATREIRSDPRFNELPIIAVTAKAMPEDRQKCLDAGLNDFVAKPVDEGRLMSAILHWV 1441 Query: 121 G 121 Sbjct: 1442 R 1442 >gi|160886472|ref|ZP_02067475.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483] gi|156108357|gb|EDO10102.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483] Length = 1362 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+DN+ + +D ++ YI L NG EALE+ ++ K D+I+ D+ + I G+ Sbjct: 1112 ATILLVDDNKEMVDYLKDNFKSE-YITLIAGNGEEALEMMKEQKVDLILSDVMMPGIDGI 1170 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + +K++ + IPVI ++A + + G + YI KP S+++ I + Sbjct: 1171 KLCEIVKKNMQTCHIPVILLSAKGSLEAQTAGIQAGADDYIPKPFSINLLKGKINNIL 1228 >gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 223 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R + + Y NG + L LA D++++D+ L E+ G E Sbjct: 2 RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PV+ +TA D+ + G + Y+ KP + + F+ I+ + A Sbjct: 62 VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118 >gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+M+ +D E + +I GY +G EAL + PD++I+D+ + +++G + Sbjct: 2 KIMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMPKLNGFD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q+++ + +P+I ++A D+ K G + Y+ KP S I+ + Sbjct: 62 VCAQLRK--KGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRR 118 >gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 227 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED+ +L + +GY NG + L +A ++ D++++D+ + E+S Sbjct: 1 MAPTILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL-VAAENDIDLVLLDVMMPELS 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++++ + +PVI +TA D+ G Y++KP + + I+ + Sbjct: 60 GFEVLRRLR--GKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLL 117 Query: 121 G 121 Sbjct: 118 R 118 >gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM 16992] gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM 16992] Length = 242 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED I G+ A +G A++ A +PD++IMDI L + GL Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIMLPVMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I + + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 73 EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 937 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IV+D N + +L+E G+ ++ NG E LE + +PD II D+ + + G Sbjct: 723 KKILIVDDRWENRSVIVNLLEPLGFEVIEASNGQEGLEKITRDRPDTIICDLAMPVMDGW 782 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ KQ+++ L++ VI +A + D ++ G +++KP+ + K + Sbjct: 783 EMLKQLRQSETLRDAIVIVSSASVFENDRQKSLDAGGNDFLAKPVQADELYAVLAKQL 840 >gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I +DN+ ++ R L+E+ G+ + NG +A+ + D+II+DI + SG Sbjct: 1 MRNILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT-DLIILDIMMPIKSG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +I+E + P++ +TA + D+ G + ++SKP S + + +K + Sbjct: 60 FKACIEIREKTSA---PILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|162295949|gb|ABX83921.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + ++ G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|146297292|ref|YP_001181063.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410868|gb|ABP67872.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 234 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 5/123 (4%) Query: 2 LKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 + + V +V+D + + + + + GY + L+ +++PD++I+DI L +I Sbjct: 1 MSRYLVYVVDDEKDILDIIYQYLISRGYEVKTFEDASSFLKEFEENEPDIVILDIMLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ K+I++ S +P+I ++A + D+ + G + YISKP SL IKK Sbjct: 61 DGYELCKKIRKSS---NVPIIMLSAKGEEFDKVLGLELGSDDYISKPFSLLELEARIKKI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED + + + G++ NG++ L LA + D+II+D L I GL Sbjct: 2 KLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGLA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ ++ PV+ +TA A D R + G + Y+ KP + S + I + Sbjct: 62 VLAALRQS---RQTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRR 117 >gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 238 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L ++ + G +G E + R+ + D+I++D+ L SGL Sbjct: 5 AHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVMLPGKSGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ P+I +TA D + G + Y+ KP + I+ + Sbjct: 65 ELCRDLRAQ---YSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121 >gi|329935641|ref|ZP_08285448.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] gi|329304902|gb|EGG48773.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] Length = 228 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 8 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ ++P+I +TA D + G + Y+ KP+ + I+ + Sbjct: 68 RRVR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121 >gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 808 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ + ++ GY A NG+E L + DVI+MDIQ+ E+ GL+ Sbjct: 674 RILVAEDNIINQKVIKKMLHKLGYRADVAANGLEVLVALDRQDYDVILMDIQMPEMDGLD 733 Query: 64 ITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++I+E +P +IA+TAFAM+GD+E+ G + YISKP++L ++ Sbjct: 734 AARKIRETRPT--LPKIIAITAFAMEGDKEKCIDSGMDGYISKPVNLEELRAILRS 787 >gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 828 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 6/124 (4%) Query: 2 LKK---VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE--LARQHKPDVIIMDIQL 56 +K +++ EDN +N KL R ++ +GY + NG EALE +A D+I MD+Q+ Sbjct: 673 MKHSVCILLAEDNFVNQKLARMMLTKAGYRVVVANNGKEALEKYMASPDDFDLIFMDVQM 732 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ GL TK I+E IP++A+TA AMKGD E+ + G + YI+KPI + E + Sbjct: 733 PEMDGLIATKTIREKG-FDAIPIVAMTAHAMKGDREKCLEAGMDDYITKPIKREVVFEVL 791 Query: 117 KKYI 120 +K++ Sbjct: 792 EKWV 795 Score = 113 bits (285), Expect = 8e-24, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 74/124 (59%), Gaps = 7/124 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQ 57 +++++V+DN N+++ ++E +G + +NG + + R+ + D+ I DIQ+ Sbjct: 524 RRILVVDDNLRNLEILTHILEFAGMAVVALKNGEAVVPILRKALAAGNPFDLCISDIQMP 583 Query: 58 EISGLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +SG E+ ++++ + L+++P+IA+++F M+ + ++ G + ++SKPI ++ + Sbjct: 584 VMSGYEVARRVRNEEVPLRDLPMIALSSF-MEREAGLCKEAGFDGFLSKPIHREKLLQMM 642 Query: 117 KKYI 120 + I Sbjct: 643 ARLI 646 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 63/119 (52%), Gaps = 4/119 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+++ ++ +D++ G+ + +G+ AL++ PDVI +D+ + I G Sbjct: 6 KKILVVDNDRFILEFMKDVLSEKGHEVVTAEDGLSALDILETLAPDVIFVDLIMPNIGGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK-PIS--LSIFMETIKK 118 E+ I+++ L+ +I ++A D RK G + +I K P+ + + +++ Sbjct: 66 ELCFLIRKNPALKNAFLIILSALG-HDDATDYRKLGADHFIVKGPLKEMAAEVLAALEQ 123 >gi|288962855|ref|YP_003453149.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288915121|dbj|BAI76605.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 253 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I ED + + + SG + +G ALEL R +PD++++D+ + + G ++ Sbjct: 26 ILIAEDEPEIVDILAVYLARSGLRTVHATDGRRALELHRSLRPDLVLLDVNMPHVDGWQV 85 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ L PVI +TA D+ + G + YI KP + + I+ + Sbjct: 86 LSEIR---HLGTTPVIMLTALDQDIDKLMGLRIGADDYIVKPFNPAEVAARIQAVLRR 140 >gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 250 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED I G+ A +G A+ A Q KPD+IIMDI L + G+ Sbjct: 12 RTILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAEQLKPDLIIMDIMLPIMDGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T++I +P++ +TA + D+ G + Y++KP S + + Sbjct: 72 EATRRI---ISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRR 128 >gi|255531222|ref|YP_003091594.1| ATPase [Pedobacter heparinus DSM 2366] gi|255344206|gb|ACU03532.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM 2366] Length = 1370 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVEDN+ + E + Q NG++ +ELA + PD+II D+ + E+ G+ + Sbjct: 1120 LIVEDNQDVRQFIAAHFEAE-FEIHQAENGLKGMELATEIIPDIIISDVMMPEMDGITLC 1178 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +IK D+ +PVI +TA + + G + YI+KP +L++ + + Sbjct: 1179 SKIKSDTRTSHVPVILLTARTPLVYKIEGYETGADDYITKPFNLNMLEARVWNLL 1233 >gi|255282781|ref|ZP_05347336.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] gi|255266802|gb|EET60007.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] Length = 217 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED E L R + +GY +G EA + Q D+I++DI L +++G Sbjct: 1 MIKILIVEDEEAIANLIRMNLVKAGYQCELAFDGEEAADKIAQKSYDLILLDIMLPKLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ E ++ +IPVI +TA + + + G E YI+KP ++ + ++ + Sbjct: 61 YEVL----EYAKSVDIPVIFLTAMGETQQKVKGLRLGAEDYIAKPFEIAELLARVETVLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|218264515|ref|ZP_03478340.1| hypothetical protein PRABACTJOHN_04043 [Parabacteroides johnsonii DSM 18315] gi|218221946|gb|EEC94596.1| hypothetical protein PRABACTJOHN_04043 [Parabacteroides johnsonii DSM 18315] Length = 1323 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VEDNE +++ L Y L RNG E LE AR+ +PD+I+ D+ + E+SG Sbjct: 1065 RTILLVEDNEELLQILGSLFSPI-YRVLLARNGKEGLEKAREERPDIIVSDVMMPEMSGT 1123 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +IK D ++ IPV+ +TA + G + YI+KP + + + + Sbjct: 1124 EMCLKIKNDFDVCHIPVVLLTALTSAEQNIEGLQRGADDYINKPFNAKVLLARCNNLVR 1182 >gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 224 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED+ L ++ +GY N A +L + + D+++ DI + ++ G Sbjct: 1 MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ IP++ +TA +E+ G + Y+ KPI+ + + IK + Sbjct: 61 YQFAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|197118407|ref|YP_002138834.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] gi|197087767|gb|ACH39038.1| response receiver histidine kinase [Geobacter bemidjiensis Bem] Length = 452 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 62/116 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ KL L+ GY RNG +ALE R+ +PD++I DI + E+ G E+ Sbjct: 14 ILIVDDSPTQAKLLEQLLAGEGYRVAIARNGSDALEQIRERQPDLVISDILMPEMDGFEL 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ +++ P++ +T D + G ++SKP S + + I+ + Sbjct: 74 CRRVRGMESIKDTPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRDVL 129 >gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+E +L ++ G I R G E L A +H DV+++D+ L GLE+ Sbjct: 18 VLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGLEV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ S ++P+I VTA + D + G + Y+ KP S + I+ + A Sbjct: 78 CRELRTRS---DVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRA 133 >gi|87198466|ref|YP_495723.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134147|gb|ABD24889.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 245 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + D + G++ Q EA + D++++DI + GL Sbjct: 7 RILLVDDEPALREPLADYLVRQGFVVTQAGTAAEARSRLLETGCDLVLLDIMMPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + E + +PVI +TA D + G + Y+ KP + I+ + A Sbjct: 67 LCRHL---VESKRLPVIFITAKGESTDRIVGLEIGADDYVVKPFDPRELVARIRSVLRRA 123 >gi|17231588|ref|NP_488136.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133231|dbj|BAB75795.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 356 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 58/117 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D N + L++ Y G +A+ +PDVI++D+ + + G+E+ Sbjct: 7 ILVIDDEPDNFDVVETLLDGENYQLHYASGGQQAIARLSSFQPDVILLDVMMPHLDGIEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK D + Q +P+I VTA K D G + +ISKP++ + + Sbjct: 67 CRRIKADPQWQAVPIIIVTALTAKEDLAHCLNAGADDFISKPLNSVELRARVNSMLR 123 >gi|281424136|ref|ZP_06255049.1| sensor histidine kinase/response regulator [Prevotella oris F0302] gi|281401793|gb|EFB32624.1| sensor histidine kinase/response regulator [Prevotella oris F0302] Length = 634 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+D+E ++ +++ + + +G EAL +H+PDVI+ D+ + E+ G + Sbjct: 390 LIVDDSEDFLEFMAEVL-SHKFHVRVAHDGKEALMRVEEHRPDVILSDVMMPEMDGNALC 448 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KE+ +IP I +TA + + G + YI+KP S+ + I I Sbjct: 449 RALKENRNTCDIPFIMLTARVAEAHRMESLELGADDYITKPFSMDLLDLRISNLI 503 >gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 325 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + G+ G AL + + +PD +++DI L ++ GL Sbjct: 84 RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPDMDGLA 143 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ S +IPV+ +TA D G + Y++KP S+ ++ + Sbjct: 144 VLRGMR--SVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRR 200 >gi|270157584|ref|ZP_06186241.1| response regulator TutC [Legionella longbeachae D-4968] gi|289164037|ref|YP_003454175.1| sensor histidine kinase [Legionella longbeachae NSW150] gi|269989609|gb|EEZ95863.1| response regulator TutC [Legionella longbeachae D-4968] gi|288857210|emb|CBJ11031.1| putative sensor histidine kinase [Legionella longbeachae NSW150] Length = 806 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVEDN + +++ Y + +G E LE A + P VII DI + +++G+E+ Sbjct: 458 VLIVEDNPAMNEFLCEILSKE-YRIICAHDGKEGLEKAIEFLPHVIISDIMMPDMNGIEM 516 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 I++ S L P++ VTA A RI + G + Y++KP S I + Sbjct: 517 VHAIRKHSSLLSTPIMIVTAKADDDLRVRILQEGAQDYMTKPFSAQELKARIANLV 572 >gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + L + + G+ +G + L +A ++ DVI++D+ L ++G Sbjct: 2 RVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGYT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ P++ +TA DE G + ++SKP S + + ++ I Sbjct: 62 VCARLRDAENW--TPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRR 118 >gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] Length = 243 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++ + + NG EALE+ + + I+DI + ++ G+E+ Sbjct: 17 ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 77 CRRIREK---YSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131 >gi|242281256|ref|YP_002993385.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] gi|242124150|gb|ACS81846.1| response regulator receiver modulated metal dependent phosphohydrolase [Desulfovibrio salexigens DSM 2638] Length = 352 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D N+ L ++ G+ + N + ALE + D+++ D+ + ++G Sbjct: 5 RKILVVDDEPHNIMLLEGILTKLGHEVVGAENAVVALEKLDR-TYDLVLSDVMMPVMNGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++I+E++E Q+IPVI VT + KGD + + G +I+KPI + + + + Sbjct: 64 EFVEKIRENTETQDIPVIMVTTLSQKGDRLKAVEIGANDFITKPIDIVELRVRTESMLRQ 123 >gi|330502123|ref|YP_004378992.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916409|gb|AEB57240.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 244 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED + ++ SG +G +AL + + KPD++++D+Q+ + G ++ Sbjct: 18 VLIAEDEAEIADILIAYLQRSGLRTQHASDGQQALAMHQSLKPDLLLLDVQMPVLDGWKV 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I+ + PVI +TA D+ + G + Y+ KP + + + ++ + Sbjct: 78 LSEIRSRG---DTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRR 132 >gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 MI+ED+ ++ RD +E G+ +G+E L A K D+I++D+ L I G EI Sbjct: 1 MIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYEIC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +E +P++ VTA D+ R G + YISKP S + + +K + + Sbjct: 61 RKIRGKTE---VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQ 114 >gi|315921683|ref|ZP_07917923.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695558|gb|EFS32393.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 956 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DN L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 711 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 769 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 770 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLVARVRNLI 825 >gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1351 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N K+ +++ GY A NG+E LE + DVI+MD+Q+ + GLE Sbjct: 1090 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALERQPYDVILMDMQMPIMDGLE 1149 Query: 64 ITKQIKEDSELQEIP------VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +QIK+ + + P +IAVTA AM+ D G + YISKPI + ++ + Sbjct: 1150 AARQIKKRYDSNDNPYSPRPRIIAVTANAMESDRAECIAAGMDDYISKPIRMEQLVKVLS 1209 Query: 118 K 118 Sbjct: 1210 N 1210 Score = 66.3 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 57/124 (45%), Gaps = 12/124 (9%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+++I++ + N ++ ++ G + T + EA+ +Q K D+ I+++++ + G Sbjct: 942 KRLLIIDSHPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQGKTFDIAIVEMEIANLDG 1001 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMK-----GDEERIRKGGCEAYISKPISLSIFMETI 116 Q+++ S ++P++ + + + + A+++KPI S + Sbjct: 1002 FNFATQVRQTSAGVDLPLVMLISVGQQNFNPTDHRD------FVAFLNKPIKQSPLYNIL 1055 Query: 117 KKYI 120 + Sbjct: 1056 INVL 1059 >gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] Length = 230 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + G+ NG++ L LA + D+I++D L I GL Sbjct: 2 KILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGLA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ ++ PV+ +TA D + + G + Y+ KP + S + + + + Sbjct: 62 VLAALRQ---TKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRS 118 >gi|289209559|ref|YP_003461625.1| response regulator receiver protein [Thioalkalivibrio sp. K90mix] gi|288945190|gb|ADC72889.1| response regulator receiver protein [Thioalkalivibrio sp. K90mix] Length = 121 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ + + R ++E G+ +G E + A+ PD+++MD+ + ++G Sbjct: 1 MARILIVDDSPTEIHVLRTMLEKHGHAVTTAESGEEGVAAAKAQVPDLVLMDVVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+++ + E +PV+ V+ D + G YI+KP++ ++TI KY+ Sbjct: 61 FQATRELSKSDETSHVPVVVVSTKDQATDRVWAMRQGARDYITKPVAEKDLLQTIGKYL 119 >gi|218887629|ref|YP_002436950.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758583|gb|ACL09482.1| response regulator receiver protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 121 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60 +K+++I ED +L + + Y LQ NGM+A+E+AR H+PD+I+MD+ + I Sbjct: 1 MKRILIAEDQYEVRELVQATLRIGNYQILQAENGMQAVEMARLHRPDLILMDVMMPGEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE T++I+ D +I +TA D E + G + Y KP S + I++++ Sbjct: 61 GLEATRRIRSDPVTAGCRIIMLTAKGQTQDREEGLRAGADDYFPKPFSPLALIRKIEEFL 120 Query: 121 G 121 G Sbjct: 121 G 121 >gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 233 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59 + V+I++D++ L + +E A+ G E L L +++ ++I+DI + +I Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I+E IPVI +TA + D+ + G + Y++KP S++ M + Sbjct: 61 DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1] gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1] gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1] gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1] gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 229 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D++ +L I+ GY + NG EAL + ++I+DI + E+ G+ Sbjct: 2 KILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDGI 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K++++DS+L P++ ++A D+ + G + Y++KP + M +K + Sbjct: 62 EVIKEVRKDSQL---PILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRR 118 Query: 123 A 123 + Sbjct: 119 S 119 >gi|305667235|ref|YP_003863522.1| two-component system transcriptional regulator [Maribacter sp. HTCC2170] gi|88708169|gb|EAR00407.1| two-component system, transcriptional regulatory protein [Maribacter sp. HTCC2170] Length = 237 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + + +NGME E ++ DV I+D+ + G Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNNFDVTLAKNGMEGFEKFKKDNYDVCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+E +E +P++ +TA MK D + K G + Y++KP + + +K + Sbjct: 66 TLAREIREKNE--NVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQR 123 >gi|294634068|ref|ZP_06712623.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] gi|292829882|gb|EFF88236.1| sensor histidine kinase/response regulator [Streptomyces sp. e14] Length = 144 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++V+D+ N+ ++E G+ L NG + +E H +++MD+ + E+ G Sbjct: 24 RTVLVVDDDARNLFALSGILELYGFRVLHAENGRKGIETLLAHPEIALVLMDVMMPEMDG 83 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T +I++ + E+P+IAVTA AM GD E+ G Y++KP+ + +++++ Sbjct: 84 YTATAEIRKLPQYAELPIIAVTAKAMPGDREKSLSSGASDYVTKPVDTHDLIACVRRWL 142 >gi|158334093|ref|YP_001515265.1| response regulator receiver [Acaryochloris marina MBIC11017] gi|158304334|gb|ABW25951.1| response regulator receiver, putative [Acaryochloris marina MBIC11017] Length = 119 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 66/119 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V++V+D ++L + GY + T + +AL A KPD+++ D+ + +SG Sbjct: 1 MRTVLVVDDGPAELELICSYLREGGYTVISTTDAKDALAKAESQKPDLVVTDVVMPGMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ + +K++ Q++PV+ T+ D+ +K G +AY++KP + ++ ++ + Sbjct: 61 FELCRSLKKNEATQQLPVVICTSKNQDLDKLWGKKQGADAYVTKPFTREDLLQAVQSVV 119 >gi|126660463|ref|ZP_01731572.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] gi|126618276|gb|EAZ89036.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation [Cyanothece sp. CCY0110] Length = 608 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ ++ GY + G AL++ + PD+I++DI + +++G ++ Sbjct: 26 ILIVDDTIENLRVLSSILTAQGYNVRKATGGHMALKVVKTLPPDLIMLDIMMADLNGYDV 85 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +Q+K++ +IPVI ++A D+ + + G YI KP + + +K + Sbjct: 86 CEQLKQNPRTADIPVIFLSALDDVFDKVKAFEMGGVDYICKPFQMEEVLVRVKNQL 141 >gi|189424148|ref|YP_001951325.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189420407|gb|ACD94805.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 239 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+E + L + +G E ++ D+II+D+ L+ G Sbjct: 1 MPQLLIVDDDEEILSLLTKFFSQHHHSVTVAVDGTEMFTALEKNSFDLIILDVMLKGEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++++ + +IPVI +TA D + G + Y++KP + + +K + Sbjct: 61 FSLCRRLR---MVSKIPVIILTAMGDLTDRIVGLEIGADDYLTKPFNARELLARVKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 909 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++VEDN+ N + ++ T G NG AL D+++MD+Q+ + GL Sbjct: 648 AHVLMVEDNDTNRLILEQILSTLGCTVRHANNGQAALAALEVEPFDLVLMDVQMPIMDGL 707 Query: 63 EITKQIKEDSELQEIP---VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+E + + P +IA+TA A+ GD E + G + Y++KP+++ + +++ Sbjct: 708 TATRRIREAEKERHQPRQLIIALTANALAGDREMCLQAGMDDYVTKPVTIGGLSKAFQRW 767 Query: 120 I 120 + Sbjct: 768 L 768 >gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 243 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 10/127 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-------HKPDVIIMDIQL 56 ++++VED E + G+ ++ +G A+E+ D++++D+ L Sbjct: 9 RILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G E+ +I+ S +PVI +TA + D+ + G + Y++KP S + + Sbjct: 69 PRLDGTEVCTRIRRSS---SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 125 Query: 117 KKYIGEA 123 K + + Sbjct: 126 KAVLRRS 132 >gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea thermophila UNI-1] Length = 1819 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 7/126 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 V++ EDN N +L ++ GY A G +ALE+ +H I+MD Q+ + G Sbjct: 1543 VLLAEDNSANQRLATVQLKRLGYQADLVTTGEQALEMYMRHPERYLAILMDCQMPVMDGF 1602 Query: 63 EITKQIKEDSELQ--EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF---METIK 117 E T++I+E + IP+IA+TA AM+GD E + G + YISKP+S+ + ++ Sbjct: 1603 EATRRIREFEHTRQRHIPIIAMTANAMQGDREACIQAGMDDYISKPVSIQRLGEVLAAVE 1662 Query: 118 KYIGEA 123 + + + Sbjct: 1663 RAVRPS 1668 Score = 35.5 bits (82), Expect = 2.7, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 23/118 (19%) Query: 11 NELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISGLEITKQIK 69 + + ++ +A+E R+ D+ I+DI L ++ + + Sbjct: 1403 DPVEKHFLETMLSGWQMQVHSGCEVEDAVECLRKDAHFDLAILDISLPA----DLLRNLL 1458 Query: 70 EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAY--------ISKPISLSIFMETIKKY 119 + + A + D+ C AY I +P+ S+ MET++ Sbjct: 1459 SHDISRAT---ILLANLNERDK-------CVAYEQLERVVTILRPVRQSVLMETMRSL 1506 >gi|313500967|gb|ADR62333.1| Response regulator receiver protein [Pseudomonas putida BIRD-1] Length = 121 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 67/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ M + +E GY L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+Q+ +D E IPVI VT + D + G +++KP+ + +K+ +G Sbjct: 61 FQATRQLSKDPETSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEEALIAKLKEVLG 120 >gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+I+ED + + ++ G+ + +G E L+LA + D+I++D+ L +SG+E Sbjct: 3 RVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGME 62 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+ +E P+I +TA D+ G + Y+SKP ++ + I+ Sbjct: 63 VCRRIRA---AKETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRR 118 >gi|294810056|ref|ZP_06768728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442749|gb|EFG11544.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295085462|emb|CBK66985.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1307 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN + L R+ + T + ++ NG EALE+ + DVI+ D+ + E+ GLE Sbjct: 1061 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSVDVIVSDVMMPEMDGLE 1119 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D IPVI +TA + + G + Y+ KP S+ + I+ + Sbjct: 1120 LCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLL 1176 >gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 605] gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 605] Length = 263 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + + G+ +G EA+ + PDV+++DI L ++ GLE Sbjct: 39 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++E P + +TA D G + Y++KP SL + ++ + + Sbjct: 99 ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 156 >gi|237717363|ref|ZP_04547844.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262406129|ref|ZP_06082679.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|294644026|ref|ZP_06721803.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] gi|229443346|gb|EEO49137.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262357004|gb|EEZ06094.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|292640550|gb|EFF58791.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides ovatus SD CC 2a] Length = 1326 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN + L R+ + T + ++ NG EALE+ + DVI+ D+ + E+ GLE Sbjct: 1080 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSVDVIVSDVMMPEMDGLE 1138 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D IPVI +TA + + G + Y+ KP S+ + I+ + Sbjct: 1139 LCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLL 1195 >gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] Length = 227 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED E ++ + +E GY + + G EA+E D+I++D+ L IS Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++++ + + IP+I +TA D+ G YI+KP + + I+ + Sbjct: 61 GLEVLRRVRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM 14838] Length = 1474 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE+ Sbjct: 1218 LLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLEML 1276 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++D ++ IPVI +TA +G + + G AYI+KP S + I + + E Sbjct: 1277 QSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1333 >gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus H3081.97] gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus H3081.97] Length = 896 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|217958585|ref|YP_002337133.1| sensor histidine kinase/response regulator [Bacillus cereus AH187] gi|217065019|gb|ACJ79269.1| sensor histidine kinase/response regulator [Bacillus cereus AH187] Length = 896 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01] gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B] gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01] gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B] Length = 239 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRHANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|71909457|ref|YP_287044.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849078|gb|AAZ48574.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 860 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETS-GYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++VED+ LN ++ L+E G + +A+ + D+I+MD+ + + G Sbjct: 736 AHILLVEDDPLNREVAAILVEEMTGVPVDLADSAEQAIAKVQATAYDLILMDLLMPGMDG 795 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE T++I+ P+IA+TA A D ER G ++ KP+ ++ ++ Sbjct: 796 LEATRRIRALPGYATTPIIALTANAFAEDRERCLAAGMNDHLGKPVVPERLQAVLEHWL 854 >gi|51893537|ref|YP_076228.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857226|dbj|BAD41384.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 123 Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 1/122 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIE-TSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M +++++ED+ ++ + ++ G+ G E + A Q +PD+I++D+ + E+ Sbjct: 1 MALRILLIEDDPDIQRMVQLSLKFQGGHEVSVASGGQEGIAKAEQERPDLILLDVMMPEM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E +++K + IP++ ++A A + + E+ R G Y+ KP + ++ Sbjct: 61 DGYETCRRLKANPATASIPIVFLSARAQQSEIEKGRSLGAIGYLVKPFDPMTLSDQLEAM 120 Query: 120 IG 121 + Sbjct: 121 LR 122 >gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu 4113] Length = 1851 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 KV+IV+D+ N+ ++E G L NG E +E+ QH +++MDI + E+ G Sbjct: 1731 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1790 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ + +P+IA+TA AMKGD E+ + G Y++KP+ + ++ ++ Sbjct: 1791 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIEAGASDYVTKPVDTDHLLTVMEHWM 1848 >gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K++IV+D++ ++L +E GY + NG EAL PD ++I+D+ + ++ G Sbjct: 2 KILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKL-NMNPDIALMILDVMMPQMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++++S+ IPV+ ++A D+ + G + Y++KP + M +K + Sbjct: 61 MEVIREVRKESQ---IPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980] gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K++I +D++ ++L + GY A++ +G EAL R D++I+DI + E+ G+ Sbjct: 2 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDGM 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ K+++++S+ IP+I +TA D+ + G + Y++KP + M +K + Sbjct: 62 QVVKELRKESQ---IPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRR 118 >gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3] gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3] Length = 231 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D L ++ Y + EALE + + D+ I+DI L + S Sbjct: 1 MSDKVLVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIMLPDAS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I ++I++ P+I +TA + D+ G + YI+KP + +K + Sbjct: 61 GLTICQKIRDKHTY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 240 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED I G+ A +G A++ A Q +PD++IMDI L + GL Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I + + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 73 EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|254444190|ref|ZP_05057666.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198258498|gb|EDY82806.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 664 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 73/124 (58%), Gaps = 4/124 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ +N +L L+ GY Q +G+EA+E ++ D+I++D + + G E Sbjct: 536 KILLVEDHAVNRRLAVKLMSKLGYECDQAVDGLEAMECCIENDYDLILLDCCMPRMDGYE 595 Query: 64 ITKQIKEDSELQE----IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ ++ +++ +IA+TA A++GD ER + G + Y++KP+ +I + I+ Sbjct: 596 FVREFRKLEGVRKLERPTRIIALTANALQGDRERCLEAGMDDYLTKPLKKAILGDAIRDA 655 Query: 120 IGEA 123 + ++ Sbjct: 656 LADS 659 >gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 223 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED+ + + SGY R G + L +A ++ D++++D+ L I G E Sbjct: 2 TILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ +++PVI +TA D R + G + Y+ KP S + + I+ + Sbjct: 62 IMRALRTR---RDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRR 117 >gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 223 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED+ +E GY Q ++G E L LAR++ D++I+D+ L +++GL Sbjct: 2 RLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGLPKLNGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I +++++ E + IP++ +TA D+ + G + Y+ KP +K + + Sbjct: 62 IVQRLRQ--EGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRS 119 >gi|86608396|ref|YP_477158.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556938|gb|ABD01895.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 341 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 61/115 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D + +L+ ++ + + NG EALE + +PD++++D+ + +SG + Sbjct: 22 HVLVVDDQASSRLYIGELLRSAHFRVSEATNGEEALEAVERLRPDLVLLDVLMPNMSGFD 81 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + +Q+K + + IPV+ +TA + + + G + ++KP + ++ Sbjct: 82 VCRQLKANELTRLIPVVLITALTDRSNRLMGMQVGADDILTKPFDHVELLARVRS 136 >gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] Length = 250 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+D ++ +E + + NG++A+ +AR PDV+I+DI L I GLE Sbjct: 18 RALVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPSIDGLE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + ++ +TA + D G + YI+KP S + I+ + Sbjct: 78 VCRQLR---TFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRR 133 >gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus ATCC 53653] gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++++VED+ + + G+ +G A++ A +PD++++D+ L GL Sbjct: 20 RRILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVMLPGFDGL 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 80 EVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 136 >gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] Length = 232 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + +GY +G+E LEL + D+II DI + ++ Sbjct: 1 MEKTILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELFKNKSIDLIITDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ + P + +TA + D+ G + +I+KP S + + Sbjct: 61 GYDFISEV--QYLSPDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1] gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1] Length = 896 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 235 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMDI + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 >gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans TK24] gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans TK24] Length = 244 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED++ + + G++ +G A++ A +PD++I+DI L GL Sbjct: 18 RRVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 77 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 78 EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 134 >gi|320105200|ref|YP_004180791.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] gi|319752482|gb|ADV64242.1| response regulator receiver protein [Isosphaera pallida ATCC 43644] Length = 348 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 66/116 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D++ KL ++ GY L+ +G+ AL++ KPD+I++DI + + G + Sbjct: 226 TILVVDDSQTVRKLVSITLKGRGYDVLEANDGIAALDVISNRKPDLILLDITMPRLDGYK 285 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + K IK E + IPVI ++ D+ R + GC +YI+KP ++ ++++ Sbjct: 286 LCKIIKGHDETRHIPVIMLSGKDGFFDKARGKFVGCTSYITKPFEPGALIQEVERH 341 >gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 769 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N+ + + L+ G+ A +G AL + D+I MD Q+ + G Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALSRMESTRYDMIFMDCQMPVLDGYA 557 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ + +S + +P++A+TA AM GD ER G + Y+SKP++ +++++ Sbjct: 558 ATRHWRALETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617 Query: 121 GE 122 Sbjct: 618 PR 619 >gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 235 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D L + ++ G+ NG +AL LA +KPD I+D+ + + G Sbjct: 10 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + P + +TA D G + Y++KP SL + ++ + Sbjct: 70 LLNKLRA--AGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126 >gi|228906741|ref|ZP_04070613.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL 200] gi|228852918|gb|EEM97700.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL 200] Length = 896 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ +E + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHATIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] Length = 223 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D L R +E GY L +G EAL+ + P+V+I+D+ L + G E Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEE-PNVLILDVMLPDTDGYE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E ++IPV+ +TA + D+ + G + Y++KP + + + +K Sbjct: 61 LLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117 >gi|229131904|ref|ZP_04260769.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196] gi|228651495|gb|EEL07465.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196] Length = 896 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ +E + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 242 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED I G+ A +G A++ A +PD++IMDI L + GL Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIMLPVMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I + + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 73 EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|224538239|ref|ZP_03678778.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM 14838] gi|224520171|gb|EEF89276.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM 14838] Length = 1490 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN R + + Y ++ +GM+ A + PD+II D+ + G+ +T Sbjct: 1223 LLVEDNSELRLFLRSIFASE-YRIVEAVDGMQGWSKALKFLPDIIISDVMMPGKDGITMT 1281 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP++ +TA + + G + YI+KP S + +K + Sbjct: 1282 RELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVKNLL 1336 >gi|114777683|ref|ZP_01452643.1| probable sensor/response regulator hybrid protein [Mariprofundus ferrooxydans PV-1] gi|114551899|gb|EAU54433.1| probable sensor/response regulator hybrid protein [Mariprofundus ferrooxydans PV-1] Length = 1043 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 70/117 (59%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDNE+N ++ L+ +G NG EA+E D ++MD+Q+ + GLE Sbjct: 712 RLLLAEDNEVNREVAEGLLTRAGISLQVVHNGQEAIEALEHDDFDGVLMDLQMPVMGGLE 771 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ ++++ +E+P+IA+TA AM D ER + G +I+KPI + +T+ ++I Sbjct: 772 ATRVLRKNPRFRELPIIAMTANAMADDRERCLQAGMNDHIAKPIHPATLYDTLLRWI 828 Score = 42.0 bits (99), Expect = 0.027, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 15/116 (12%) Query: 17 LFRDLIETSGYIALQTRNGMEALELARQ--HKPDVIIMDIQLQEISGLEITKQI------ 68 + + E G+ G +AL +Q KPD+ ++D +L +++ +++ Sbjct: 575 IMSHMAEELGFNTQLFPTGSDALTALQQAPDKPDLFLVDWKLSDMNSETAIRRMHQLVSA 634 Query: 69 ----KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +P+I + + + G + + KP++ S E K+ + Sbjct: 635 AHADKRIKVDAHVPLILMQPIGRDAEVQY---QGIDVRLFKPVTGSDLCEAAKQAL 687 >gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas fluorescens Pf-5] Length = 224 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + SGY+ NG + L L RQH D++I+DI L I G Sbjct: 2 RILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINLPHIDGWG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + QI++DS + V+ +TA D+ R G + Y+ KP + ++ + + Sbjct: 62 VLGQIRQDSSTR---VMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRS 118 >gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family protein [Actinomyces oris K20] gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] Length = 249 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D L + +G+ +G AL+ + PD++++D+ L ++ G Sbjct: 15 AHLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGF 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E P++ +TA D+ + G + Y++KP L + I+ + Sbjct: 75 TVARRLRERDVT--TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRR 132 >gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 224 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + SGYI G++ L LA+ DV+I+D+ L E+ G E Sbjct: 2 RILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + V+ +TA ++ + + G + Y+ KP + ++ + + Sbjct: 62 VLSRLRKTVSTR---VMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRS 118 >gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 226 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED R + +GY+ +G+ A D++I+D+ L G Sbjct: 2 RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + PV+ +TA GD R + G + Y++KP + ++ + Sbjct: 62 LLQNLR---RTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRR 117 >gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] Length = 228 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ VED + L++ Y +G L+ A D++++DI L +I G+ Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K +++ + P+I +TA + D+ G + Y++KP + + I+ Sbjct: 62 LLKTLRKQNI--RTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRR 118 >gi|291612955|ref|YP_003523112.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291583067|gb|ADE10725.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 242 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++IV+D+E L D + G++ ++G ++ D+I++D+ L G Sbjct: 7 SPRILIVDDDEDIRNLLADYLGEQGWLISTAQDGTAMQQVLDSTPIDLIVLDLTLPGSDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + + ++ S IPVI +TA + D + G + Y+ KP + I+ + Sbjct: 67 LTLCRDLRARSA---IPVIMLTARSAPLDRILGLEMGADDYLCKPFEPRELLVRIRNVLR 123 Query: 122 EA 123 + Sbjct: 124 RS 125 >gi|239995114|ref|ZP_04715638.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC 27126] Length = 490 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 7/122 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60 +KV+IVEDN++N + + + + + L ++G+EALE + K DV++MD Q+ E+ Sbjct: 358 RKVLIVEDNDINQVIVKQHL--NNHTTLSAKSGLEALEALNKMKVTFDVVLMDCQMPEMD 415 Query: 61 GLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G E TK+I+ +P+IA+TA AMKGD+ER G + Y+SKP ++ ++ Sbjct: 416 GFEATKRIRNGEAGERYLNVPIIALTANAMKGDKERCVNAGMDDYLSKPFDAIDLIDKVE 475 Query: 118 KY 119 + Sbjct: 476 HW 477 >gi|228984189|ref|ZP_04144371.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775476|gb|EEM23860.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 883 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 763 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 822 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 823 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881 >gi|229165941|ref|ZP_04293706.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621] gi|228617494|gb|EEK74554.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621] Length = 883 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 67/119 (56%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ +E + +NG+E LE+ + + D+I+MDI + + G Sbjct: 763 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKNNTNIDLILMDIMMPNMDG 822 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 823 YETMEHIRMNLGFHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881 >gi|166030722|ref|ZP_02233551.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC 27755] gi|166029514|gb|EDR48271.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC 27755] Length = 220 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D +++ ++ G++ + N ++ L + H+ D+I++DI + + G Sbjct: 1 MAKILAVDDEPAILEMIESILNKDGHLVTKVSNPLK-LNMEELHRYDLILLDIMMPGMDG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+ L + P++ +TA + G + YISKP + I ++ Sbjct: 60 FELCKRIRA---LVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|149372308|ref|ZP_01891496.1| two-component system, transcriptional regulatory protein [unidentified eubacterium SCB49] gi|149354698|gb|EDM43261.1| two-component system, transcriptional regulatory protein [unidentified eubacterium SCB49] Length = 238 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + Y +NGME E ++ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGTVLKDYLAMNDYNVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E + E+P+I +TA AMK D + K G + Y++KP + + IK I Sbjct: 66 TLAKEIREKN--AEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQR 123 >gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1002 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D+ +L R +E GY + ++GM+A+ + PD+I++D+ + +I+G Sbjct: 801 KTILVVDDDANIRELLRQQLENEGYNVREAKDGMDAIHQIKISSPDLIVLDVMMPQINGF 860 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +K D +IP+I ++ + ++ER G + Y++KPI+ + I + + Sbjct: 861 DVAAVLKNDPLTADIPIIILS---IVENKERGHHIGIDRYLTKPINTEELLNEIGSLLSQ 917 Score = 63.2 bits (154), Expect = 1e-08, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMD-IQLQEIS 60 KKV++V+ N +K D+++T GY ++ + E + A KPD+II+D I QE Sbjct: 921 SKKVLVVDQNASTLKTISDVLQTQGYNVIEASDPQECIRKALSAKPDMIIIDSIFSQEAD 980 Query: 61 GLEITKQIKEDSELQEIPVIAVT 83 + K +K + EL+ + I ++ Sbjct: 981 ---LVKTLKFEKELENVFFIMLS 1000 >gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis FV-1] gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92] gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92] gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125] Length = 239 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED +L D ++ +GY NG E + RQ P +I++D+ L G+ + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +IP++ VTA + D + G + YI KP S + +K + Sbjct: 74 CREIR---RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128 >gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] Length = 235 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED ++ + G+ NG+ R H PDVI++D+ L + G+ Sbjct: 6 RILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGIS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ P+I +TA + D + G + Y+ KP + + +K + A Sbjct: 66 VCRQLRA---FCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRA 122 >gi|299149366|ref|ZP_07042423.1| putative DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_23] gi|298512553|gb|EFI36445.1| putative DNA-binding response regulator/sensor histidine kinase [Bacteroides sp. 3_1_23] Length = 956 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DN L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 711 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 769 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 770 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLVARVRNLI 825 >gi|294494981|ref|YP_003541474.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] gi|292665980|gb|ADE35829.1| response regulator receiver protein [Methanohalophilus mahii DSM 5219] Length = 121 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 82/119 (68%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VEDN +NM+L DL+E+ GY +Q +G +AL++ ++ D+I++D+QL ++ G Sbjct: 1 MATILVVEDNPMNMELTVDLLESYGYEVMQAEDGSQALDVVEKNTFDLILLDMQLPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 LE+ ++ KE ++ PV+A+TA AM+GD+++ GC YISKPI + F +TI Y+ Sbjct: 61 LEVLEKFKEIENSKDTPVVALTAHAMRGDDKKFINAGCAGYISKPIDIHEFQQTISSYV 119 >gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 823 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN +N ++ + ++E+ G +G+ A+ RQ++ D++ MD Q+ + GL Sbjct: 563 RQVLLVEDNPVNQEVGKGMLESLGCRVKVVEDGLAAVNEVRQNRYDLVFMDCQMPVMDGL 622 Query: 63 EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E T++I+ E +PVIA+TA+AMKGD + G + Y+SKP + + +++ + Sbjct: 623 EATRRIRAREEGTGNRVPVIALTAYAMKGDRLACLEAGADEYLSKPFTRDQIAKIMQRQL 682 Score = 66.3 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 37/87 (42%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++ D+E + + + + G + AL D+ ++D ++ G+ Sbjct: 425 KRVLLATDDEETREGVSEQLFSWGVDLECAGDAPAALCRLVTAPFDLALLDHRIAGTDGI 484 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKG 89 E+ I+ + + ++ +T A + Sbjct: 485 ELAAAIRTVPAGRSVRLLLLTESAEEA 511 >gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] Length = 237 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + L + GY G +A L + + D+ ++DI L ++ G E Sbjct: 5 RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDVDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ + + PVI +TA + D+ G + Y+ KP + K + Sbjct: 65 LLRTIRTE---RTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRR 120 >gi|254436165|ref|ZP_05049672.1| hypothetical protein NOC27_3228 [Nitrosococcus oceani AFC27] gi|207089276|gb|EDZ66548.1| hypothetical protein NOC27_3228 [Nitrosococcus oceani AFC27] Length = 158 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 65/119 (54%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ FR ++E G+ NG+E L A+ KPD+I+MD+ + +++G Sbjct: 38 MTHILVVDDSSTESHAFRIMLEKKGFTVSFANNGLEGLTKAKALKPDLILMDVVMPQVNG 97 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+++K D E IPVI ++A + D + G + Y+SKP+S I I Sbjct: 98 FQATRKLKRDPETAGIPVIIISAKNQETDRVWGLRQGAKGYLSKPVSKEELFNKINMLI 156 >gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC 15579] gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++ +VED++ K L+ + G+ EAL +K D+ ++DI L + +G Sbjct: 1 MKRIFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPDGNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IKE Q++PVI +TA + + G + YI+KP + I+ + Sbjct: 61 FTVCTEIKE---TQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALR 117 Query: 122 EA 123 ++ Sbjct: 118 KS 119 >gi|147678593|ref|YP_001212808.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274690|dbj|BAF60439.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 453 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 2/120 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+ KV++V+D E ++ +D++E G+ + NG EALE PD +++DI++ EI Sbjct: 1 MMSKVLVVDDEESVRQMLKDVLEDDGHQVMLAENGREALEKITVRHPDAVLLDIRMPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++ + +P+I +TAF + + + G YI KP ++ + T+KK + Sbjct: 61 GLAVLDIVRREGST--VPIILMTAFGITDMAIQAIQTGAYDYIIKPFNIDELLLTVKKAV 118 >gi|313905194|ref|ZP_07838562.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469947|gb|EFR65281.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 221 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED + + ++E GY +G EALE + DV+I+DI + ++ GLE Sbjct: 2 KILLAEDTKDMNRALTAVLEHEGYEVASAFDGAEALEYIDRDSYDVMILDIMMPKVDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + + PV+ +TA A D+ G + Y++KP S+ + I+ + + Sbjct: 62 VIREARNRKIV--TPVLLLTAKAEIDDKVAGLDAGADDYLTKPFSIKELLARIRAMVRRS 119 >gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] Length = 228 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E ++ GY +G L+ A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E L++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVARRVRE---LKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|307725772|ref|YP_003908985.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] gi|307586297|gb|ADN59694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003] Length = 1198 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++ ED+ N+ +IE G RNG EALE D+I+MDI + E+ G Sbjct: 1077 RTILLAEDDVRNIFALSHVIEPLGAKLQIARNGREALEALENGPEVDLILMDIMMPEMDG 1136 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +I+ + +P+IA+TA AM D R + G + Y+SKPI + + + ++ Sbjct: 1137 LTAMGEIRRNPRFAHLPIIALTAKAMANDRLRCLEAGADDYVSKPIDVDKLVALCRVWLR 1196 Query: 122 E 122 + Sbjct: 1197 Q 1197 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ ++ RDL+ + + N L L R +P +++D+ L + SGL + Sbjct: 811 IVAVEDDLAFAEILRDLVHELDFDFVHASNAASGLALVRDMRPAAVLLDVGLPDRSGLTV 870 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +K D + IP+ V+A ++ G Y KP + S I++ Sbjct: 871 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 922 Score = 76.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + R L+++ + EALE + D ++ D+ L + +G Sbjct: 931 KRVLVIEDDTPMRESIRALLQSENTEIVAVATLSEALEHLGKLSFDCVVTDLALPDGTGY 990 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ + E +PVI T + +EE + Sbjct: 991 DLLERLAGNPEHAALPVIVYTGRMLSDEEEHRLR 1024 >gi|288959550|ref|YP_003449891.1| two-component response regulator [Azospirillum sp. B510] gi|288911858|dbj|BAI73347.1| two-component response regulator [Azospirillum sp. B510] Length = 283 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ LN L ++ +G+ A NG+EA+ A+ D+I+MD+ + E+ GL Sbjct: 20 RILVVEDSPLNQMLVTAILAQAGHRAETANNGLEAVMAAQAGGYDLILMDLSMPEMDGLT 79 Query: 64 ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T+ +++ +PV+A+TA + D R + G +++KP+ + +ET++K++ Sbjct: 80 ATRLLRDLPGPAGRVPVVAMTADTDEADRVRCQDAGMNDHVAKPVDRAQLLETVEKWLRA 139 Query: 123 A 123 + Sbjct: 140 S 140 >gi|256840897|ref|ZP_05546405.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] gi|256738169|gb|EEU51495.1| two-component system sensor histidine kinase [Parabacteroides sp. D13] Length = 374 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 64/114 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D N+ L + +++ GY L +G +AL +A + P++I++DI + E+ G E Sbjct: 9 KVLIVDDVPTNVMLVQAILKKEGYTLLTCDSGTKALRIANEKHPNLILLDIMMPEMDGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + +K + E +IPVI ++A + + + G Y++KP ++ + Sbjct: 69 VLQHLKSNPETTDIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122 >gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 231 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+++ED+ + + + T G E ++ R +PD++++D+ L ++G Sbjct: 1 MSRVLLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLPGMTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ + I+ + +P+I TA + D + G + Y+ KP+ + I+ + Sbjct: 61 LEVCRGIRAVDQT--LPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 225 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++++D +++ + +E GY +Q +G+EALE + PD++I+D+ L +IS Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+ +SE +P+I +TA + + G + YI+KP S + + + Sbjct: 61 GENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +M+V+D + +K ++T Y L+ NG +ALEL ++K D+ ++DI ++ + G Sbjct: 1 MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNKIDLFLVDIMMEGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+T++I+E + P+I ++A + D+ G + YI+KP + IK + Sbjct: 61 LELTQKIRE---VSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 226 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + P I +TA D + + G Y+ KP S + + ++ + + Sbjct: 62 VLRALRTAHQS---PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117 >gi|160897316|ref|YP_001562898.1| response regulator receiver protein [Delftia acidovorans SPH-1] gi|160362900|gb|ABX34513.1| response regulator receiver protein [Delftia acidovorans SPH-1] Length = 123 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60 +KK++I ED KL R +E+S Y ++ G EA LA++ +PDV+++D+ + + Sbjct: 1 MKKILIAEDQADIRKLLRMTLESSAYEVMEAPTGDEAWALAQRSQPDVVLLDMMMPGTLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +IK +L+ VI +TA D E G + Y+ KP S + +ET+ Sbjct: 61 GLEVCCRIKTSYDLRHTRVILLTARGSAQDREAGFNAGADEYLLKPFSPNRLLETLASL 119 >gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3] gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 228 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E ++ GY +G LE A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E +++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVARRVRE---IKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332829408|gb|EGK02062.1| hypothetical protein HMPREF9455_00184 [Dysgonomonas gadei ATCC BAA-286] Length = 225 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++VED + +D +E + NG E LE+ + PD+I+ DI + ++ Sbjct: 1 MKIKVLLVEDEPALAMIIKDALEKREFTVDCAANGNEGLEMFHKLHPDIIVADIMMPKLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +T+ I++ + IP++ ++A + D + + G Y+ KP + + IK + Sbjct: 61 GFSMTQLIRQTD--KHIPILFLSAKSKTDDVVQGFEIGGNDYLKKPFGMEELIVRIKSLL 118 Query: 121 GE 122 Sbjct: 119 NR 120 >gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++VED E K + +E GY + +G E +++AR +P ++++DI L + Sbjct: 1 MAVKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + K +++ E + +I +TA A D+ + G + Y++KP + + IK Sbjct: 61 GFAVCKVLRK--EFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKS 116 >gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] Length = 241 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + + G+ T +G A+ +A +KPD+I+MDI L + GLE Sbjct: 14 VLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIMLPVMDGLEA 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK+I + + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 74 TKRI---TAARPVPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRR 128 >gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 950 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++VEDN+ +L + +E + NG+E L+ + PD+++ D + E+ GLE Sbjct: 692 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHLYHPDIVVTDQMMPEMDGLE 750 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++D ++ IPVI +TA + + + G AYI+KP S + I + + E Sbjct: 751 MLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 809 >gi|288925412|ref|ZP_06419346.1| putative response regulator receiver domain protein [Prevotella buccae D17] gi|288337883|gb|EFC76235.1| putative response regulator receiver domain protein [Prevotella buccae D17] Length = 1298 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++D ++L + + + ++ +G + LE A + PD+I+ D+ + + G+E Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAARTLPDIIVCDLMMPNMDGME 1113 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +K D +L I VI TA + D G +AY++KPISL + + I + + ++ Sbjct: 1114 FLHTLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQS 1173 >gi|239907737|ref|YP_002954478.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] gi|239797603|dbj|BAH76592.1| response regulator receiver protein [Desulfovibrio magneticus RS-1] Length = 305 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D N+ + + + + Y +G +AL L + PD+I++DI + ++ G Sbjct: 8 ATILIVDDAPSNLAVLTEALRSE-YEVRIASSGSQALRLVEESAPDLILLDILMPDMDGY 66 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ ++ K + + IP+I +TA DE G YI KP+S+ I ++ ++ Sbjct: 67 EVCRRFKARAATRNIPIIFLTAKGDVADETLGLALGAVDYIVKPVSVPIVQARVRTHV 124 >gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] Length = 224 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++I+ED E ++ GY +G + L+ A + D+I++D+ L ++G Sbjct: 1 MQQILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAALEKNYDLILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P+I +TA D G + Y+ KP ++ + ++ Sbjct: 61 LEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED+ ++ + + GY +G L+LAR +PD++++D+ L + Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 GLE+ ++I+++ E+P++ ++A + D+ + G + Y+ KP L + I Sbjct: 61 GLEVIREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARI 114 >gi|172065207|ref|YP_001815919.1| two component AraC family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997449|gb|ACB68366.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria MC40-6] Length = 277 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 58/121 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D +++L +++ ++ +G++A A+ PD+I+MD+++ + G Sbjct: 20 AHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRMDGF 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + Q IPVI +TA A D + G YI KP + I+ ++ Sbjct: 80 AACRLLASTPSTQNIPVIILTAAADLDDRIAGLETGALDYIVKPFEPVEVIARIRNHLKR 139 Query: 123 A 123 A Sbjct: 140 A 140 >gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 944 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISG 61 ++++V+DNE+N ++ +L+ +G NG A + ++ ++MD+Q+ E+ G Sbjct: 602 RILVVDDNEINREIAAELLRDAGLETDCAENGRIACGMMIENGDNYACVLMDVQMPEMDG 661 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ I+E +P+IA+TA A + +++R G +I+KP+ + +E + +++ Sbjct: 662 IAATRAIRESWPAARLPIIAMTAHAYEEEKQRCFDAGMNDHIAKPVDPTELIEKLNRWL 720 Score = 104 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 52/118 (44%), Gaps = 6/118 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59 V+ +DN ++ ++ + +G EAL D++++D ++ + Sbjct: 448 VLAADDNPAARQIIHEIFASWDMAVDLVASGEEALSALDSANKKGTPYDLVLLDWKMPGM 507 Query: 60 SGLEITKQIKEDSELQEIPV-IAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G++ + ++ +++P+ + VTA+ + R A++ KP+ + +TI Sbjct: 508 DGMDTARAMRSAGNQEKMPITLMVTAYCADEFMQEARAADISAFLQKPVDPRMLRDTI 565 >gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++V+D + + G+ + +G A+ PDV+++D+ L GL Sbjct: 4 RRVLVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASSPDVLVLDVMLPGYDGL 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA A + D G + Y+SKP S+ + + + + Sbjct: 64 EVCRRVQAS---RPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRR 120 Query: 123 A 123 A Sbjct: 121 A 121 >gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 992 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N ++ L+ G+ +G EA+E R D+++MD+Q+ E+ GL+ Sbjct: 745 RILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRSRPYDLVLMDVQMPEMDGLQ 804 Query: 64 ITKQIKEDSELQ-EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T I+ + +P++A+TA AM+GD+ G + YISKPI ME + +Y Sbjct: 805 ATAAIRALTGGAERVPIVAMTANAMRGDDRMCLDAGMDRYISKPIDRRKLMEVLAQY 861 Score = 79.0 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 16/128 (12%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEAL-----ELARQHKPDVIIMDIQLQ 57 +++++V+D+ +N + + G I + AL A + I+D ++ Sbjct: 599 RRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAAATGTPWEAAIIDARMP 658 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGG---CEAYISKPISLSIFM 113 ++G ++ +I+ + L + +I ++ D G +A+I KP+ + Sbjct: 659 GVTGSDLIGRIRAEPVLAPMGLIIASSQGLSPED-------GSPKADAFIHKPLRRQTIL 711 Query: 114 ETIKKYIG 121 + + +G Sbjct: 712 AVLARVLG 719 >gi|226947054|ref|YP_002802127.1| response regulator with metal dependent phosphohydrolase activity (two-component) [Azotobacter vinelandii DJ] gi|226721981|gb|ACO81152.1| response regulator with metal dependent phosphohydrolase activity (two-component) [Azotobacter vinelandii DJ] Length = 347 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 71/121 (58%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEI 59 M +++V+D N+ +F +++ + NG AL +AR + PD+I++D+ + + Sbjct: 1 MKATILVVDDVPENIDIFVEILAPH-HRTKVALNGERALRIARSDNPPDLILLDVMMPGL 59 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ +++K D + + IPVI VTA + DE+R + G YI+KPIS I + ++ + Sbjct: 60 SGYQVCERLKADPDTRAIPVIFVTAMSETADEQRGLELGAVDYITKPISPPIALARVRTH 119 Query: 120 I 120 + Sbjct: 120 L 120 >gi|320581795|gb|EFW96014.1| Histidine kinase osmosensor [Pichia angusta DL-1] Length = 1043 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 7/126 (5%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+++ EDN +N KL ++E G+ NG EA+E +++ DVI+MD+Q+ + G Sbjct: 857 SYKILLAEDNLVNQKLAVKILENHGHSVEVVENGQEAVEAVKKNHYDVILMDVQMPIMGG 916 Query: 62 LEITKQIKEDSELQ-------EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 E T +I+E + + P++A+TA AM GD ER K + Y+SKP+ S+ ++ Sbjct: 917 FEATAKIREWEKKKYVDSMAFRTPIVALTAHAMLGDRERCLKAQMDEYLSKPLKPSLLLQ 976 Query: 115 TIKKYI 120 TI K I Sbjct: 977 TISKCI 982 >gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 263 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ + + G++ ++G A+E A +PD++++D+ L GL Sbjct: 37 RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 96 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 97 EVCRRVQAH---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 153 >gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D L + +G+ + +G A A++ +PD+I++D+ L ++ G Sbjct: 8 AKLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGF 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+++++ PV+ +TA D+ + G + Y++KP L + I+ + Sbjct: 68 TVTRRLRDAGIT--TPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 125 >gi|311070491|ref|YP_003975414.1| two-component response regulator YxdK [Bacillus atrophaeus 1942] gi|310871008|gb|ADP34483.1| two-component response regulator (YxdK) [Bacillus atrophaeus 1942] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KKVMIVED++ L ++ +E GY + T + L+L + KPDV+++DI L G Sbjct: 1 MKKVMIVEDSKDIRSLLQNYLEKYGYQTVVTSDFTSVLDLFLREKPDVVLLDINLPSYDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QI++ S P+I ++A + + D+ + G + YI KP S I + IK I Sbjct: 61 YYWCRQIRQHSTS---PIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus ATCC 53653] gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++ED++ + G+ G + L+L R+ +PD+I++D+ L I G E+ Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA D + G + Y+ KP+ + I+ + Sbjct: 65 RRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118 >gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 769 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N+ + + L+ G+ A +G AL + D++ MD Q+ + G Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARMESTRYDMVFMDCQMPVLDGYA 557 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++ + +S + +P++A+TA AM GD ER G + Y+SKP++ +++++ Sbjct: 558 ATRRWRAMETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617 Query: 121 GE 122 Sbjct: 618 PR 619 >gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621] gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621] Length = 242 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 16 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A ++ D+ G + YI KP S F+ +K + Sbjct: 76 CRRIREK---HSLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130 >gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+E + + + Y +G EL D++++D+ L ++ GL Sbjct: 2 KLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGLA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ +IPV+ +TA ++ G + Y+ KP L I+ + Sbjct: 62 FCRQMRAQGL--DIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRR 118 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein [Herminiimonas arsenicoxydans] Length = 231 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + SG+ RNG + L +A D+I++D+ L +SG E Sbjct: 2 RILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ ++ Q IPVI +TA D + + G + Y+ KP + + I+ + + Sbjct: 62 LLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRRS 121 >gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K+++V+D++ +L I+ GY + NG EAL PD ++I+DI + E+SG Sbjct: 2 KILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHT-TPDIALMILDIMMPEMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K++++DS+ IP++ ++A D+ + G + Y++KP + M +K + Sbjct: 61 IEVVKEVRKDSQ---IPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 223 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ + + ++ +GY+ Q +G E L D +I+DI L E+ G+ Sbjct: 2 RILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + D + +PV+ +TA D+ G + Y++KP + + I+ I A Sbjct: 62 VLEKWRADGKT--MPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRA 119 >gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 769 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N+ + + L+ G+ A +G AL + D++ MD Q+ + G Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARMESTRYDMVFMDCQMPVLDGYA 557 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++ + +S + +P++A+TA AM GD ER G + Y+SKP++ +++++ Sbjct: 558 ATRRWRAMETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617 Query: 121 GE 122 Sbjct: 618 PR 619 >gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 215 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 64/118 (54%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++++D+ + L +D +E GY + +G EAL++ Q PD+II D+ + E+ G Sbjct: 10 QKLLLIDDDPNLILLVKDYLEFRGYEVMTAEHGKEALDILEQDIPDMIICDVMMPEMDGY 69 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++++DS IPV+ ++A D + G + Y+ KP + ++ + Sbjct: 70 TLVEKVRDDSRTSCIPVLFLSAKGQSQDRIKGLNKGADIYMVKPFEPEELVAQVESCL 127 >gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206] gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206] Length = 260 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia coli WV_060327] Length = 260 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|320160595|ref|YP_004173819.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319994448|dbj|BAJ63219.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 123 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 50/118 (42%), Positives = 73/118 (61%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++ VEDN N L R L+ GY ++ N A+E+ + KP +I+MDI + ++ G Sbjct: 5 KHILYVEDNPDNRMLVRRLLTAFGYEVIEAENATRAMEILKTTKPVLILMDINMPDVDGY 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T +IK D EL IPVIA+TA MKGD ER GC+ YI KPI + F+E I++++ Sbjct: 65 TLTNRIKSDPELFNIPVIALTANVMKGDRERTLDAGCDGYIEKPIDVDRFIEQIERFL 122 >gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14] gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14] Length = 245 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED++ + + G++ +G A++ A +PD++I+DI L GL Sbjct: 19 RRVLVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 79 EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135 >gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED E + ++ + + ++ G + L+ A + D+ ++D+ L I G Sbjct: 1 MRRILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ ++ +I +TA D+ + G + YI KP + + IK + Sbjct: 61 FKVCDELRK--RYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] Length = 224 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I+ED E ++ GYI +G + LE A ++ D+I++D+ L ++G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P+I +TA D G + Y+ KP ++ + ++ Sbjct: 61 LEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J] gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J] Length = 228 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVED + + ++ GY NG E LE A + D+I++D+ L E+ Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++ + + ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 239 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 235 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY Q +G+EA+E + ++IMDI + + G+E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S+ +P+I ++A D+ G + YI KP S+ + +K I A Sbjct: 65 SMRRIREKSK---VPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRA 121 >gi|115377385|ref|ZP_01464590.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] gi|310824780|ref|YP_003957138.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115365596|gb|EAU64626.1| response regulator receiver domain protein [Stigmatella aurantiaca DW4/3-1] gi|309397852|gb|ADO75311.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 968 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ VEDN N + R + + Y L+ +G LE ++ PD+++MD+ L + G E Sbjct: 847 RILYVEDNPQNRDIVRRYLGGT-YELLEAEDGEHGLERVQRETPDLVLMDLSLPRVDGWE 905 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T++++ + ++PVIAVTA A + +++ GC+AY++KP+ ++TI+K++G+ Sbjct: 906 ATRRLRALPAAISKVPVIAVTAHAGREYQDKAMAAGCDAYLTKPLDREQLLDTIRKHLGK 965 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++V+D+ L +L +E +G+ + +G+ AL LAR+ KP II+DI L + G Sbjct: 597 TVLVVDDDPLMQQLVAGQLEPAGFKVVAAEDGVNALRLAREVKPQAIILDIHLPRLDGWS 656 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + Q+K + L IPVI V+ ++ R G Y+ KP+ +E + + +G A Sbjct: 657 VLSQLKSEPTLSGIPVILVS---VEEQRARGYSLGACEYLVKPVEPDHLVEVVTRTLGTA 713 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ +L + +G+ + +G +AL AR P ++++D+ + + G E+ Sbjct: 720 VLVVDDDASTRELVSRSLRRAGFSTSEAHSGEDALLKARVSPPVLVVLDLMMPNLDGFEV 779 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 ++++ D +PV+ +T + E+ + G A++ K Sbjct: 780 LRRLRSDKL--NMPVVVLTGKTLSAQEQATLRDGFIAFVRK 818 >gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1002 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 67/120 (55%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K +++V+D+ +L R +E GY + ++GM+A+ + PD+I++D+ + +I+G Sbjct: 801 KTILVVDDDANIRELLRQQLENEGYNVREAKDGMDAIHQIKISSPDLIVLDVMMPQINGF 860 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +K D +IP+I ++ + ++ER G + Y++KPI+ + I + + Sbjct: 861 DVAAVLKNDPLTADIPIIILS---IVENKERGHHIGIDRYLTKPINTEELLNEIGSLLSQ 917 Score = 61.3 bits (149), Expect = 4e-08, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMD-IQLQEIS 60 KKV++V+ N +K D+++T GY ++ + E + A KPD+II+D I QE Sbjct: 921 SKKVLVVDQNASTLKTISDVLQTQGYNVIEASDRQECIHKALSAKPDMIIIDSIFSQEAD 980 Query: 61 GLEITKQIKEDSELQEIPVIAVT 83 + K +K + EL+ + I ++ Sbjct: 981 ---LVKTLKFEKELENVFFIMLS 1000 >gi|332880362|ref|ZP_08448040.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681807|gb|EGJ54726.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1209 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ EDNE +DL+ + L +G E L +AR++ PD+II D+ + + G Sbjct: 1097 TVLVAEDNEQFRTFMKDLLGQD-FTVLTAADGQEGLAMAREYGPDLIISDVMMPHMDGYA 1155 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + +K+D + IP I +TA + G +++I+KP + + I+ Sbjct: 1156 FCRAVKDDVQCCHIPFILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIR 1209 >gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20] Length = 238 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 10/127 (7%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-------HKPDVIIMDIQL 56 ++++VED E + G+ ++ +G A+E+ D++++D+ L Sbjct: 6 RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 65 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G E+ +I+ S +PVI +TA + D+ + G + Y++KP S + + Sbjct: 66 PRLDGTEVCTRIRRSS---SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 122 Query: 117 KKYIGEA 123 K + + Sbjct: 123 KAVLRRS 129 >gi|317481176|ref|ZP_07940251.1| two component regulator propeller [Bacteroides sp. 4_1_36] gi|316902672|gb|EFV24551.1| two component regulator propeller [Bacteroides sp. 4_1_36] Length = 1351 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN + + NG E A + PD+I+ DI + + G E+ Sbjct: 1096 LVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKEIPDIIVSDIMMPVMDGNEMC 1154 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K+D IP+I +TA D+E + G ++Y++KP S S+ I+ + Sbjct: 1155 RELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLL 1209 >gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] Length = 231 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + Y +G EALE + D+I++D+ L +I G+E Sbjct: 2 KLLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEVYDYDLIVLDLNLPKIDGIE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ EI ++ ++A D + G Y+ KP + I+ + + Sbjct: 62 VLRRVRSNNN--EIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRS 119 >gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ ED+ + + GY L +G AL D+I++D+ L E+ GLE+ Sbjct: 4 VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ D + PV+ +TA A + D G + Y++KP L+ + ++ + Sbjct: 64 CRRLRADG--KSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|300770258|ref|ZP_07080137.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762734|gb|EFK59551.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 1321 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+EDN L D++ Y + NG++ A + PD+I+ D+ + +SGL++ Sbjct: 1071 ILIIEDNPELSNLLVDMLSGL-YRVYVSYNGLDGAAKAEEEIPDLILSDVMMPGLSGLDL 1129 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K + + IP+I +TA + + + G +AYI+KP + TI+ + Sbjct: 1130 CSRLKSEPKTSHIPIILLTALGSIDKQIKGLEQGADAYITKPFDRDYVLLTIRNLL 1185 >gi|293394600|ref|ZP_06638894.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291422909|gb|EFE96144.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 231 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +VED +E+ G+ G AL+ Q +P +II+D+ L +I+ Sbjct: 1 MKPPIWLVEDEPSIADTLVYTLESEGFQVRWFERGEPALQALAQGEPALIILDVGLPDIN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++ S ++P++ +TA + + D + G + Y++KP S ++ + Sbjct: 61 GFELCRRLLAQS--ADLPILFLTARSDEIDRLLGLEIGADDYVAKPFSPREVSARVRTIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|270294551|ref|ZP_06200753.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] gi|270276018|gb|EFA21878.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D20] Length = 1351 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN + + NG E A + PD+I+ DI + + G E+ Sbjct: 1096 LVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKEIPDIIVSDIMMPVMDGNEMC 1154 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K+D IP+I +TA D+E + G ++Y++KP S S+ I+ + Sbjct: 1155 RELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLL 1209 >gi|295688630|ref|YP_003592323.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295430533|gb|ADG09705.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 614 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N +L R ++E G + +G+ +E RQ + D+++MD+Q+ GL Sbjct: 490 RLLLVEDNAVNRELVRAMLEPFGVVVETANDGVAGVEAMRQGEFDLVLMDVQMPVKDGLT 549 Query: 64 ITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T++I+ P+IA+TA + G + ++ KPIS S +E + ++ G Sbjct: 550 ATREIRALEGARGAATPIIAMTANVLPEQVANCLAAGMDDHLGKPISPSKLLEAVARWSG 609 Query: 122 EA 123 + Sbjct: 610 RS 611 >gi|260550399|ref|ZP_05824610.1| two-component system response regulator [Acinetobacter sp. RUH2624] gi|260406505|gb|EEW99986.1| two-component system response regulator [Acinetobacter sp. RUH2624] Length = 247 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + + G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|239979783|ref|ZP_04702307.1| two-component system response regulator [Streptomyces albus J1074] Length = 221 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 M++ED++ + G+ G E L L R+ +PD+I++D+ L I G E+ Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEVC 60 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ ++P+I +TA + D + G + Y+ KP+ + I+ + Sbjct: 61 RRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114 >gi|254419224|ref|ZP_05032948.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196185401|gb|EDX80377.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 234 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +V+D+E + +E+ G+ +G L PD++I+D+++ + G Sbjct: 1 MANITLVDDDENIVASVSLALESHGHKITAYHDGASGLAALESAPPDLVILDVKMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++++ +IPVI +T+ + DE G + YI KP S + +E +K + Sbjct: 61 MEVLRRLRQ---TSQIPVIMLTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|305667709|ref|YP_003863996.1| two-component system sensor histidine kinase/response regulator [Maribacter sp. HTCC2170] gi|88709759|gb|EAR01992.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Maribacter sp. HTCC2170] Length = 1356 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+EDN+ ++ Y + NG+ LE+A +H PD+II D+ + G E+ Sbjct: 1111 ILIIEDNKDVAYYLDQCLKGH-YKTIHAINGVLGLEMAFEHIPDIIISDVMMPGKDGYEV 1169 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +KED IP+I +TA D G +AY++KP +++ + Sbjct: 1170 CAMLKEDERTDHIPIILLTAKVTTKDRVMGLTQGADAYLAKPFIKEELFARLEQLL 1225 >gi|87121077|ref|ZP_01076968.1| phosphate regulon transcriptional regulatory protein PhoB [Marinomonas sp. MED121] gi|86163569|gb|EAQ64843.1| phosphate regulon transcriptional regulatory protein PhoB [Marinomonas sp. MED121] Length = 214 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 62/107 (57%) Query: 17 LFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSELQE 76 + +E +GY L+ N A E+ H+PD+I++D + SG+E+T+++K+++ E Sbjct: 1 MIAIALEMAGYEYLEADNSRTAYEIIVDHRPDLILVDWMMPGGSGIELTRRLKKEALTAE 60 Query: 77 IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 IPVI +TA + + ++ + + G + YI+KP S + +K + A Sbjct: 61 IPVIMLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLRRA 107 >gi|307328135|ref|ZP_07607315.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306886254|gb|EFN17260.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 257 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED+++ R +E G+ +G+ LE+ R+ +PD++++D+ L E+ G+ Sbjct: 20 AHLLLVEDDKVIRNTVRMALERYGFTVFTAGDGLTGLEIFREKQPDLLLLDVMLPELDGI 79 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E S P++ ++A D + G + Y+ KP ++ + I+ + Sbjct: 80 GLCRRVREFSLA---PILMMSARGDALDVVSGLEAGADDYVIKPCESAVLVARIRSLLRR 136 Query: 123 A 123 A Sbjct: 137 A 137 >gi|299144746|ref|ZP_07037814.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298515237|gb|EFI39118.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1315 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED + + ++ ++ Q NG+ ALE+ +Q +PD+I+ D+ + +++G ++ Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IKE+ + IPVI +TA A + K G +AY+ KP + + + I+ + Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175 >gi|298480102|ref|ZP_06998301.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298273911|gb|EFI15473.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1315 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED + + ++ ++ Q NG+ ALE+ +Q +PD+I+ D+ + +++G ++ Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IKE+ + IPVI +TA A + K G +AY+ KP + + + I+ + Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175 >gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 259 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++I+ED + + + ++ Y + NG + L+ A D I++D+ L +++G Sbjct: 22 MAKILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPDLNG 81 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LEI +++++ + P+I +TA D G + YI KP ++ + ++ + Sbjct: 82 LEIARRVRQS---KTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 138 Query: 122 E 122 Sbjct: 139 R 139 >gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 230 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++V+D + + GYI +G EALE +PDV+I+D+ + +++ Sbjct: 1 MNKRILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVMMPKLT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ +++ + + +I +T D+ + G + Y++KP + + K + Sbjct: 61 GYEVCRKL---ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALV 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|284066971|gb|ADB77766.1| AdeR [Acinetobacter genomosp. 13] Length = 247 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + + G ++ NG +A+EL D+I++DI+L E++G E+ Sbjct: 15 ILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|237719016|ref|ZP_04549497.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451794|gb|EEO57585.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1315 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED + + ++ ++ Q NG+ ALE+ +Q +PD+I+ D+ + +++G ++ Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IKE+ + IPVI +TA A + K G +AY+ KP + + + I+ + Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175 >gi|229588249|ref|YP_002870368.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229360115|emb|CAY46969.1| two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 224 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + + SGY+ +G++ L LARQH+ +++I+D+ L G E Sbjct: 2 RILVVEDEQKTADYLQQGLTESGYVVDCAASGIDGLHLARQHRYELVILDVNLPNTDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ D + V+ +TA D+ + G + Y+ KP + ++ + + Sbjct: 62 VLEQLRRDGNQR---VMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRS 118 >gi|228899749|ref|ZP_04063996.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] gi|228859863|gb|EEN04276.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] Length = 214 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED++ +L + + T Y + +G+E ++ + D+I++D+ + ++G E+ K Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAKM 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ S IP+I +TA + D+ + G + YI+KP S + M ++ + + Sbjct: 62 IRSQS---NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 114 >gi|229010405|ref|ZP_04167609.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048] gi|228750825|gb|EEM00647.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048] Length = 896 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ +E + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHANIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 223 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R + + Y NG + L LA D++++D+ L E+ G E Sbjct: 2 RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PV+ +TA D+ + G + Y+ KP + + F+ I+ + A Sbjct: 62 VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118 >gi|150009686|ref|YP_001304429.1| two-component system sensor histidine kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|149938110|gb|ABR44807.1| two-component system sensor histidine kinase/response regulator, hybrid [Parabacteroides distasonis ATCC 8503] Length = 1369 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+DN + + + Y L +G +A +L + PD++I D+ + G+ Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1180 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK D +PVI +TA + K + + G + YISKP ++ + + ++ I Sbjct: 1181 LCRRIKGDIRTSHVPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLI 1237 >gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905] gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905] Length = 227 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V+IV+D + L ++ S +G EA ++ + K D++++D+ + G Sbjct: 1 MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + I+ S +P+I +TA D+ + G + YI KP + + I + Sbjct: 61 FVVCQSIRAMS---NVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|77361753|ref|YP_341328.1| osmolarity response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876664|emb|CAI87886.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Pseudoalteromonas haloplanktis TAC125] Length = 239 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D+ L + G+I N + L + ++++D+ L GL Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLIERENFHLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +++++ +IP++ +TA + D + G + YI KP + + IK + Sbjct: 67 ICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123 >gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 1236 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 72/117 (61%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VEDN +N ++ +L++++GY NG +LE+ + D I+MDIQ+ + GL Sbjct: 1111 VLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMVGKRSYDAILMDIQMPVMDGLTA 1170 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++++ E+P+IA+TA AM GD E+ G A+I+KPI L+ ET+ +IG Sbjct: 1171 ATELRKRYSFDELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLSHWIG 1227 Score = 94.8 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 56/117 (47%), Gaps = 4/117 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + ++V+DN ++++ ++ + G EAL + + D++++D + E+ G++ Sbjct: 968 RTLVVDDNPTALQIYSSVMRDFHFEVETASTGAEALYKLCKQQVDLVLLDWMMPEMDGIQ 1027 Query: 64 ITKQIKE---DSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + I E + +L P +I +TA+A + + + A + KP S + I Sbjct: 1028 VIDAIDEMVAEGKLAARPVIIIMTAYAAEPLKVDLDSDRVFAMLQKPFKASSLFDEI 1084 >gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + ++ED++ L + +E GY +AL +P + + D+ L + GL Sbjct: 4 IYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLMLPGMDGLTA 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+++ L++IP++ +TA + D+ GG + Y++KP + I+ + + Sbjct: 64 IRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLRRS 122 >gi|323528028|ref|YP_004230180.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385030|gb|ADX57120.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 1197 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++ ED+ N+ +IE G RNG EAL+ + D+I+MDI + E+ G Sbjct: 1076 RTILLAEDDVRNIFALSHVIEPLGATLQIARNGREALDALQNGPEVDLILMDIMMPEMDG 1135 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +I+ + +P+IA+TA AM D R + G + Y+SKPI + + + ++ Sbjct: 1136 LTAMGEIRRNPRFAHLPIIALTAKAMANDRLRCLEAGADDYVSKPIDVDKLVALCRVWLR 1195 Query: 122 E 122 + Sbjct: 1196 Q 1196 Score = 92.9 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ VED+ ++ RDL+ + + N L L R +P +++D+ L + SGL + Sbjct: 810 IIAVEDDLAFAEILRDLVHELDFDFVHASNAASGLALVRDMRPAAVLLDVGLPDRSGLTV 869 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + +K D + IP+ V+A ++ G Y KP + S I++ Sbjct: 870 LEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 921 Score = 77.1 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 48/94 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + R L+++ + EAL+ + D ++ D+ L + +G Sbjct: 930 KRVLVIEDDAPMRESIRALLQSDNTEIVAVATLSEALQHLEKLSFDCVVTDLALPDGTGY 989 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ ++E +PVI T + +EE + Sbjct: 990 DLLERLAANTEHAALPVIVYTGRMLSDEEEHRLR 1023 >gi|237717261|ref|ZP_04547742.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262406028|ref|ZP_06082578.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294806883|ref|ZP_06765708.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229443244|gb|EEO49035.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262356903|gb|EEZ05993.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294445912|gb|EFG14554.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1315 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED + + ++ ++ Q NG+ ALE+ +Q +PD+I+ D+ + +++G ++ Sbjct: 1060 LIVEDKQDLREFLKNALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IKE+ + IPVI +TA A + K G +AY+ KP + + + I+ + Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175 >gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] Length = 229 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++++VED E + ++ + + ++ G + L+ A + D+ ++D+ L I G Sbjct: 1 MRRILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++++ ++ +I +TA D+ + G + YI KP + + IK + Sbjct: 61 FKVCDELRK--RYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|154491974|ref|ZP_02031600.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC 43184] gi|154088215|gb|EDN87260.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC 43184] Length = 688 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++++D++ + + Y L+ RNG + + +A + +PD+I+ D+ + G Sbjct: 441 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGINVALKEEPDLILCDVMMPVKDGY 499 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E ++IK D ++ + PV+ +TA D + G + YI+KP + I I + Sbjct: 500 ETCREIKNDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLM 557 >gi|46201806|ref|ZP_00054307.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 241 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ L + ++G+E +++ + + D++++D+ L GL Sbjct: 7 HILVVDDDREIRDLLTKFLMRHNLRVSAAKDGVEMMKMLDERRIDLVVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E +P++ +TA D + G + Y+ KP + + IK + Sbjct: 67 LCRRMRE--SRSGVPIVMLTAMGEDTDRIVGLEMGADDYLPKPFNPRELLARIKAVLRR 123 >gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 1127 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK------PDVIIMDIQL 56 ++++IVED+ N+ +++E G + RNG EALE + D+++MD+ + Sbjct: 1002 RRILIVEDDVRNVYSLTNVLEPRGAMIEIARNGKEALEALERSSTDPSKAVDLVLMDVMM 1061 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GL T+++++DS + +PV+ +TA AM D+ER G Y++KP+ + + + Sbjct: 1062 PVMDGLAATRELRKDSRWKTLPVLMLTAKAMPDDQERCMAAGANDYMAKPLDVDKLLSLV 1121 Query: 117 KKYIGE 122 + ++ Sbjct: 1122 RVWMPR 1127 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 3/114 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED++ + RDL G+ + EAL+LA++H+P +++D+ L + SGL + Sbjct: 737 LVVEDDDRFAAIVRDLSRELGFQCIVAGTAEEALKLAKRHRPSAVVLDVGLPDQSGLTVL 796 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +K D + + IP+ V+A + + G Y+ KP+ E ++ Sbjct: 797 DVLKRDDDTRHIPIHIVSA---EDHSQTALSLGAIGYLVKPVKREDLAEVLRTL 847 Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V+IVED+ + L+ + + E LE R D +++D+ L + SG Sbjct: 856 RRVLIVEDDVVQRDAVSRLLASGDVETVGVGTAAECLEQLRSQTFDCMVLDLTLPDASGF 915 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 + + + ++ PVI T + D E+ + Sbjct: 916 SLLETLSREAGHGFPPVIVYTGRDLSPDHEQQLR 949 >gi|325298664|ref|YP_004258581.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] gi|324318217|gb|ADY36108.1| integral membrane sensor hybrid histidine kinase [Bacteroides salanitronis DSM 18170] Length = 1327 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ L RD+++ GYI + +G EALE ++ PD+I+ DI + + G Sbjct: 1073 VLIVEDDAHLRDLLRDILK--GYIVFEAADGKEALEKIKKTHPDIILTDIIMNGMDGFTF 1130 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K D + IP++ ++A D+ + G +Y++KP TI+ I Sbjct: 1131 IQAVKSDPNISYIPLVVISAKNSVEDQIKASNLGANSYLTKPFHPLQIKSTIENLISR 1188 >gi|323487548|ref|ZP_08092841.1| hypothetical protein HMPREF9474_04592 [Clostridium symbiosum WAL-14163] gi|323399149|gb|EGA91554.1| hypothetical protein HMPREF9474_04592 [Clostridium symbiosum WAL-14163] Length = 255 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 71/122 (58%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEIS 60 ++++ ED+ +N ++ +++ G +G EA++ Q D+I+MD+++ + Sbjct: 127 RILLAEDHPINAEIATEILTLKGMRVELAGDGAEAVKCFEQSASGYFDLILMDMRMPNMD 186 Query: 61 GLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GLE TK I+ + +IPVIA+TA + + D++ ++ G + ++SKP+ + + I+K Sbjct: 187 GLEATKAIRASDHPDAAKIPVIALTANSFQEDKDMAKEAGMDDFLSKPLEIDLLYTVIQK 246 Query: 119 YI 120 ++ Sbjct: 247 WL 248 >gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++VED+ + + GY L + G EAL D++++D+ L ++ G Sbjct: 1 MTRVLLVEDDPAISEPLARALGREGYEVLASSTGREALTNVEGA--DLVVLDLGLPDMDG 58 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ ++I+ D +P++ +TA + D G + Y++KP L+ + ++ + Sbjct: 59 LDVAREIRADGG--RVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 230 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++I++D + L ++ + + + +AL L + D+ I+D+ L + + Sbjct: 1 MNEKILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVMLPDGN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ K I+E P+I +T+ D G + Y++KP + +K + Sbjct: 61 GFELCKLIREKYTY---PIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|226953156|ref|ZP_03823620.1| response regulator [Acinetobacter sp. ATCC 27244] gi|226836086|gb|EEH68469.1| response regulator [Acinetobacter sp. ATCC 27244] Length = 243 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ G ++ NG +A+E+ D+I++DI+L E++G E+ Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|261345981|ref|ZP_05973625.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM 4541] gi|282565866|gb|EFB71401.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM 4541] Length = 233 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED +L D ++ +GY+ G E + ++H PD+I++D+ L + G+ Sbjct: 10 HILIVEDEPKLGQLLFDYLQAAGYVPALLMRGDEVIPYVQKHFPDLILLDLMLPGMDGIS 69 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++++ ++PVI VTA + D + G + Y+ KP S + +K + Sbjct: 70 VCRELRK---FSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRR 125 >gi|260642655|ref|ZP_05416773.2| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] gi|260621140|gb|EEX44011.1| two-component system sensor histidine kinase/response [Bacteroides finegoldii DSM 17565] Length = 1343 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+DN + + ++++ Y + NG AL++ + D+++ D+ + E+ GL++ Sbjct: 1091 ILLVDDNIEMLDYLKGILQSK-YQVITATNGKIALDIMKTQPVDIVLSDVMMPEMDGLQL 1149 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K + + IPVI ++A + D+ G + YI KP S S+ I + Sbjct: 1150 CKLVKRNIQTSHIPVILLSAKSSLEDQTSGIDIGADDYIGKPFSTSLLKGKINNIL 1205 >gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42] Length = 233 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59 + V+I++D++ L + +E A+ G E L L +++ ++I+DI + +I Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I+E IPVI +TA + D+ + G + Y++KP S++ M + Sbjct: 61 DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 234 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++++ED+ + R + Y + G E LE R+ + D+II+DI L EI Sbjct: 1 MNGKILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIMLPEID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K I+ L +P++ ++A + D+ + K G + YI+KP SL + I Sbjct: 61 GFAVCKNIR---LLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNI 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D L + +G+ + +G A A+ +PD+I++D+ L ++ G Sbjct: 14 AKLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+++++ PV+ +TA D+ + G + Y++KP L + I+ + Sbjct: 74 TVTRRLRDAGIT--TPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131 >gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D K+ + GY +G AL+ AR+ +PDV+++D+ L + Sbjct: 1 MSGQVLVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G+E+ ++++ + VI +TA + D+ G + Y++KP S + + Sbjct: 61 GVEVCRRLR---TFSDCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAA 115 >gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D + GY G LA QH D++I+D L SG+E Sbjct: 2 RILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHYDLLILDWMLPHQSGVE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +Q++ + +IP++ +TA D G + Y+ KP L + ++ + Sbjct: 62 MCQQLR--LKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|71909695|ref|YP_287282.1| response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal [Dechloromonas aromatica RCB] gi|71849316|gb|AAZ48812.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 631 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED +N K+ L+ G NG+EAL + D+I+MD+Q+ E+ G+ Sbjct: 511 KQILLVEDTPVNQKIAEKLLSRYGCRVTIAVNGLEALAAVERDTFDLILMDMQMPEMDGV 570 Query: 63 EITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E T+ ++ + +L P++A+TA AM+ D E+ G + +I+KP + + +Y Sbjct: 571 EATRHLRIREAELKLPRQPIVAMTANAMEEDREQCITAGMDDFIAKPFRADEVISMLLRY 630 Query: 120 I 120 + Sbjct: 631 L 631 >gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Hpt [Nitrococcus mobilis Nb-231] Length = 715 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 2/112 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N KL L++ G+ + NG EA+ + + + D+++MD+Q+ E+ GLE Sbjct: 453 RILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVFDRDRFDLVLMDVQMPEMDGLE 512 Query: 64 ITKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM 113 T ++ + +P+IA+TA AMKGD E+ + G + Y+SKPI Sbjct: 513 ATAAVRAKEANSDRHVPIIALTAHAMKGDREQCLEAGMDGYVSKPIRAPELF 564 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 5/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 + +IV+DN N + +++ G A E L R + ++I D + Sbjct: 311 RALIVDDNATNRLILNEMLGNWGMQATSVAAVAEGLAALRTAYAARRPFRLVITDCHMPG 370 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G ++ ++IK+D +L +I ++ +T+ + GD + G A++ KP+ S + I Sbjct: 371 EDGFDLAEKIKQDGQLSDIQLVMLTSGSEPGDIAHCEQLGVVAHLLKPVKQSELFDAIGS 430 Query: 119 YIG 121 +G Sbjct: 431 ALG 433 >gi|329907837|ref|ZP_08274716.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] gi|327546908|gb|EGF31823.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium IMCC9480] Length = 375 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 2/117 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ EDN +N +L L++ G+ NG+EA+ L+ QH DVI+MD+Q+ ++ GLE Sbjct: 251 VLVAEDNPVNQRLAEVLLKKWGHRFSMASNGLEAIALSAQHDFDVILMDLQMPDMGGLEA 310 Query: 65 TKQIKEDSEL--QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+E +L + P+IA+TA A+ D + G + YISKP+ +++ + Sbjct: 311 TRRIREREQLQGKHTPIIAMTANALSEDRQICLDAGMDDYISKPLDVTLLRAALDAI 367 >gi|322517326|ref|ZP_08070201.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124023|gb|EFX95576.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 225 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++ ED E ++++ +E GY Q NG EA++LA Q+ VIIMDI + + Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVIIMDIMMPIKT 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E K+I+ + VI +TA A D G + Y++KPISL + ++ Sbjct: 61 GIEALKEIRSSGDRTH--VIMLTAMAEIDDRVTGLDAGADDYLTKPISLKELLARLRSLE 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|295693262|ref|YP_003601872.1| response regulator [Lactobacillus crispatus ST1] gi|295031368|emb|CBL50847.1| Response regulator [Lactobacillus crispatus ST1] Length = 180 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED +++ +E +GY NG++A+E A+++ DVI++DI + + G+ Sbjct: 2 KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 K+I+E + + ++ +TA A D G + Y++KP SL + ++ Sbjct: 62 ALKKIRESGD--KTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRS 114 >gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] Length = 240 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++V+D L + +G+ + +G A A+ +PD+I++D+ L ++ G Sbjct: 14 AKLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGF 73 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T+++++ PV+ +TA D+ + G + Y++KP L + I+ + Sbjct: 74 TVTRRLRDAGIT--TPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131 >gi|298493109|ref|YP_003723286.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298235027|gb|ADI66163.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 72/117 (61%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED N L L+E+ G NG++A+++ ++ +P +I MDIQ+ ++G E Sbjct: 794 RILIVEDILENRLLLVKLLESVGLDVRAVENGLQAIDICQEWEPHLIWMDIQMPVMNGYE 853 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TKQI+ ++ + I +IA+TA A + D++ I + GC+ ISKP + E + +Y+ Sbjct: 854 ATKQIRAMNQGKNIIMIALTASAFEEDKQAILQVGCDDIISKPFEEKMLFEKMAQYL 910 >gi|212695545|ref|ZP_03303673.1| hypothetical protein ANHYDRO_00062 [Anaerococcus hydrogenalis DSM 7454] gi|212677423|gb|EEB37030.1| hypothetical protein ANHYDRO_00062 [Anaerococcus hydrogenalis DSM 7454] Length = 227 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M V++VED+E + L +E YI + EA+ ++ + D+ I+DI L + Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I+E P+I +T+ + + + G + Y++KP + +K + Sbjct: 61 GYYLCKKIRESFNY---PIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQL 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|149278863|ref|ZP_01884998.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] gi|149230482|gb|EDM35866.1| sensory box histidine kinase/response regulator [Pedobacter sp. BAL39] Length = 526 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+IVEDN +N +L L+E GY NG A+E D+++MD+Q+ E+ G E Sbjct: 397 HVLIVEDNPINQRLVIKLMEARGYQTTVAENGRIAVEQLAARDYDIVLMDLQMPEMDGYE 456 Query: 64 ITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK I++ + + P++A+TA +KG+ E+ G YISKP S + + + Sbjct: 457 ATKLIRKMAAPKKNTPIVAMTAHTIKGELEKCLSIGMNDYISKPFSAAELYQKVGAL 513 >gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Roseiflexus castenholzii DSM 13941] gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Roseiflexus castenholzii DSM 13941] Length = 900 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 62/122 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++V+D++ L L+ + G+ G EAL+L Q D++++D+ + +++ Sbjct: 1 MPSRILVVDDHDYIRHLLVRLLTSQGHQTSVATGGREALDLLSQQSFDLVLLDLMMPDMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +Q+++ + + PVI V+ + + G + Y+ KP + + + + Sbjct: 61 GIEVLEQLRQQNVIYHTPVIVVSGVHDLDMVAQCIELGADDYLFKPFNDVLLRARVNASL 120 Query: 121 GE 122 Sbjct: 121 ER 122 >gi|298208466|ref|YP_003716645.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83848389|gb|EAP86258.1| two-component system, transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 236 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ + +D + + Y +NGME E ++ D+ I+D+ + G Sbjct: 6 KKILLVEDDPNFGIVLKDYLSMNDYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E +E E+P+I +TA AMK D + K G + Y++KP + + I+ + Sbjct: 66 TLAKEIREKNE--EVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIQAIMQR 123 >gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 239 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED+ L R + G +G AL A ++ DVI++D+ L +S Sbjct: 1 MTDSILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVMLPNMS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I ++I+ D +I +I +T+ + D + G + Y++KP S+ ++ + Sbjct: 61 GLDICRKIR-DERPMQI-IIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQL 118 Query: 121 GE 122 + Sbjct: 119 RK 120 >gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 233 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++V+D E +++ + +E +GY L +G A+EL R + +I++D+ L +I G Sbjct: 5 RTILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELFRNNDISLILLDLMLPDIMGE 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + ++ + +P+I +TA + D + + G + YI KP S + + + Sbjct: 65 EICRMVRA---VSRVPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLRR 121 >gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673] gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673] Length = 231 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ +++ +D++ ++ + G+ ++ +G EALEL + H +++I+D+ + + G Sbjct: 1 MQSILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHSVNLMIIDVMMPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +++E IP+I ++A + D+ G + YI+KP + + +K + Sbjct: 61 IRTTLKVRE---TSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|320102491|ref|YP_004178082.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749773|gb|ADV61533.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1117 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 7/121 (5%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQEI 59 V++VEDN ++ R ++ G NG +A++ H D+I D+Q+ + Sbjct: 982 VLVVEDNLDVQRVIRFYLKRLGLTVESADNGQDAVQRVLSHPKGPDGFDLIFTDVQMPVM 1041 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ +++++ + P++A+TA AM+ D R GC+ ++SKPI + ++ Sbjct: 1042 DGFELVRRLRQAGRTK--PIVALTARAMEDDRIRCLNSGCDDHLSKPIDFNQLAGLVRSQ 1099 Query: 120 I 120 + Sbjct: 1100 L 1100 >gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 769 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N+ + + L+ G+ A +G AL + D++ MD Q+ + G Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALARMESTRYDMVFMDCQMPVLDGYA 557 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++ + +S + +P++A+TA AM GD ER G + Y+SKP++ +++++ Sbjct: 558 ATRRWRAMETESGGRPVPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617 Query: 121 GE 122 Sbjct: 618 PR 619 >gi|288942573|ref|YP_003444813.1| response regulator receiver modulated metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] gi|288897945|gb|ADC63781.1| response regulator receiver modulated metal dependent phosphohydrolase [Allochromatium vinosum DSM 180] Length = 356 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 + +++V+D N+ L + ++ Y G AL++ R PD+I++DI + + G Sbjct: 7 QTILVVDDAPANIDLLVNTLKVE-YNVKAATRGERALQIVRSGDPPDMILLDIMMPGMDG 65 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +Q+K D + IPVI +TA DE R G YI+KPIS + + ++ + Sbjct: 66 FEVCRQLKRDFTTRHIPVIFITAKIGIEDEIRGFDLGAVDYITKPISPPVVLARVRTQL 124 >gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 223 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED+ + D ++ +GY+ +G E L D II+DI L E+ G+ Sbjct: 2 RILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++ + + PV+ +TA D+ G + Y++KP + + I+ I A Sbjct: 62 VLEKWR--GAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRA 119 >gi|189459945|ref|ZP_03008730.1| hypothetical protein BACCOP_00578 [Bacteroides coprocola DSM 17136] gi|189433318|gb|EDV02303.1| hypothetical protein BACCOP_00578 [Bacteroides coprocola DSM 17136] Length = 1345 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+DN + L ++ + + + +AL+ + P +I+ D+ + I G E Sbjct: 1088 KILIVDDNTEMLMLLQEAFSDK-FRVVVAHDAEQALKEVKNDIPMLIVTDVMMPGIDGFE 1146 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +T+++K++ +PV+ ++A ++ G +AYI KP ++ +++ I Sbjct: 1147 LTRRLKQNKHTMSVPVVILSAKNSSQEKIAGLDAGADAYIGKPFNIDYLKAVVERLI 1203 >gi|121535346|ref|ZP_01667158.1| response regulator receiver modulated metal dependent phosphohydrolase [Thermosinus carboxydivorans Nor1] gi|121306038|gb|EAX46968.1| response regulator receiver modulated metal dependent phosphohydrolase [Thermosinus carboxydivorans Nor1] Length = 361 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 60/119 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++ED+ + +L L+ +GY +G E L KP ++++DI L +I G Sbjct: 5 AKILVIEDDARSARLMEALLMPAGYEVQTVGSGAEGLAAIETFKPHLVLLDIMLPDIDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +++K + Q +PV+ VTA A R + G + +I KP+ ++ + Sbjct: 65 EVLRRLKAEPAGQAVPVVMVTALADAKSRARGFELGADDFIIKPVEKIELYARVRSLLR 123 >gi|146301601|ref|YP_001196192.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146156019|gb|ABQ06873.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1384 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 V+IVEDN + + S Y + NG + ELA Q PD+II D+ + + G Sbjct: 1135 SYTVLIVEDNPELRNYLKQELSKS-YKVITAENGKKGYELAVQKLPDLIITDVIMPVMDG 1193 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 L++ K IK D + IP++ ++A AM D G + Y+SKP L I ++ + I Sbjct: 1194 LQLCKNIKGDLKTSHIPLLMLSAKAMVKDRLEGIDSGADMYLSKPFELDILKSSLAQLI 1252 >gi|146301929|ref|YP_001196520.1| histidine kinase [Flavobacterium johnsoniae UW101] gi|146156347|gb|ABQ07201.1| histidine kinase [Flavobacterium johnsoniae UW101] Length = 1400 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IVED+++ K ++L++ Y ++ NG ALE A + P++II D+ + E+ G Sbjct: 1145 QTILIVEDHKVLRKFMKNLLKKD-YNIIEAENGKIALEKALKFVPNLIISDVIMPEMVGT 1203 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +IKE+ + IPVI +T+ + + + G + YISKP +L F +K + Sbjct: 1204 ELCSKIKENIKTSHIPVILLTSRSSLVYKFEGLESGADDYISKPFNLMEFRLRVKNLL 1261 >gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory system with EnvZ [Serratia symbiotica str. Tucson] gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory system with EnvZ [Serratia symbiotica str. Tucson] Length = 239 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ S +P+I VTA + D + G + YI KP + + I+ + Sbjct: 66 ICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRR 122 >gi|319954021|ref|YP_004165288.1| histidine kinase [Cellulophaga algicola DSM 14237] gi|319422681|gb|ADV49790.1| histidine kinase [Cellulophaga algicola DSM 14237] Length = 1442 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IV+DN + + S Y + NG + LELA + P++II D+ + + G+E+ Sbjct: 1187 LIVDDNPDIRSFIKRGLGESYY-IYEAENGEKGLELANKFMPNIIITDLMMPVMDGIELC 1245 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++K E IPV+ +TA + E K G +AYI KP L + + + Sbjct: 1246 NKLKSAKETSHIPVVMLTAKTSQEKEIEGLKTGADAYIRKPFDLELLELKLSNIL 1300 >gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes DSM 40736] Length = 1440 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 +++IV+D+ N+ + G NG E LE+ + PD +++MDI + E+ G Sbjct: 1290 RLLIVDDDIRNVFALTHALGRVGITVRYAENGREGLEVL-ERSPDVSLVLMDIMMPEMDG 1348 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ L +P+IA+TA AM GD ++ G Y+ KP+++ + I + Sbjct: 1349 YETIRTIRNTPRLAHLPIIALTAKAMPGDRDKAIDSGANDYVPKPVNIDRLLTAICDLL 1407 >gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio coralliilyticus ATCC BAA-450] gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio coralliilyticus ATCC BAA-450] Length = 239 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ N + L + ++++D+ L GL Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + +P++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 ICRRLRNANST--LPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122 >gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] Length = 228 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 6/126 (4%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQ 57 M K +++IVED E + D ++ GY NG EAL + + D+I++DI + Sbjct: 1 MKKNRILIVEDEEKLARTMGDFLKFQGYDVCCAANGREALATFYKERKTLDLILLDIMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +ISG E+ K+I++ IPVI +TA + D+ + G + YI+KP +L + I+ Sbjct: 61 DISGYEVLKEIRK---TSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIE 117 Query: 118 KYIGEA 123 + A Sbjct: 118 AVLKRA 123 >gi|254415182|ref|ZP_05028944.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177988|gb|EDX72990.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 269 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 64/121 (52%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++++ED +L+E + + ++ NG+ ++LA Q PD+I+ D+ + E+ G Sbjct: 1 MAKILVIEDELSVRDNILELLEANNFQVTESDNGLAGIQLATQQLPDLIVCDVMMPELDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ + Q IP I +TA A + D + + G + Y++KP + + I + Sbjct: 61 YEVLTALRSNPATQTIPFIFLTAKASRDDWRQGMELGSDDYLTKPFTAKELLSAIATRLS 120 Query: 122 E 122 + Sbjct: 121 K 121 >gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator [Burkholderia phymatum STM815] gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 225 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + +E SGY +G L LA++ DVII+D+ L + G Sbjct: 2 RILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVMLPWMDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K ++ + PV+ +TA D R + G + Y+ KP + + ++ Sbjct: 62 VVKTLRA---TRATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARR 117 >gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 220 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + R + G+ +G AL A D++++D+ L GL+ Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PV+ VTA D + G + Y+ KP L ++ I Sbjct: 62 VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 >gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] Length = 221 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDN +L R+ + + G E + L +++ D++++D+ L +I G Sbjct: 1 MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K ++ S ++P+I +T + E + + G + YI+KP ++F++ ++ + Sbjct: 61 YSICKIMRGQS---DVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 225 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + R +E +GY +G + L D +++D+ L E+ GL Sbjct: 2 RVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEVDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ E +E+PV+ +TA D+ G + Y++KP + ++ I A Sbjct: 62 VLDRWRK--EGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRA 119 >gi|87309014|ref|ZP_01091152.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87288357|gb|EAQ80253.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 618 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 7/122 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 ++++VED N +L R ++E +G +G + +++ ++ D+I+MD+Q+ Sbjct: 482 RILLVEDGPDNQRLLRLILEKAGAEVAIANDGRDGVDMTLTARNQEVPFDLILMDMQMPI 541 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G + T+ ++ ++ P+IA+TA AM D +R G + Y++KPI + +ETI Sbjct: 542 MDGYQATRTLRREAI--RTPIIALTAHAMSDDRQRCMDAGVDDYLTKPIDRRLLLETIAG 599 Query: 119 YI 120 Y+ Sbjct: 600 YL 601 Score = 60.5 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 40/146 (27%) Query: 3 KKVMIVEDNELNMKLFRDLI---------------------------ETSGYIALQTRNG 35 ++V++++DN+ FR ++ G+ G Sbjct: 12 RRVLVIDDNKAIHDDFRRILAGPTNLNVAPSDIKALLFEEETLEPTELDFGFEIESAFQG 71 Query: 36 MEALELARQ-----HKPDVIIMDIQL-QEISGLEITKQI-KEDSELQEIPVIAVTAFAMK 88 E LE + +D+++ GLE KQI + +LQ V+ TA++ Sbjct: 72 EEGLEKVAAAERSGFPFALAFVDMRMPPGWDGLETVKQIWRAHPDLQ---VVICTAYSDH 128 Query: 89 GDEERIRKGGCEAYIS---KPISLSI 111 E +++ G + KP + Sbjct: 129 SWESLLQELGETDQLVILKKPFDVIE 154 >gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ] gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ] Length = 246 Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + GY N + L + +++++D+ L G+ Sbjct: 13 KILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQMDRLLGRELFNLVVLDLMLPGEDGMS 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ ++ +I +TA +G + + G + Y++KP + + IK + Sbjct: 73 ACRRLRASDN--QVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRR 129 >gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED + + + + G+ +G+ AL++ H+ D++I+D+ L + G+++ Sbjct: 3 VLLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPSMDGIQL 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K I+E E IP++ +TA + G + Y+ KP + +K + A Sbjct: 63 CKHIRERDE--NIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRA 119 >gi|260173411|ref|ZP_05759823.1| two-component system sensor histidine kinase/response regulator, hybrid ('one component system') [Bacteroides sp. D2] Length = 960 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I++DN L+ T Y ++ +G E + A ++ PD+II D+ + I G+E Sbjct: 715 VLIIDDNADIRLYVHGLLHTD-YTVIEAADGSEGIRKAMKYVPDLIISDVMMPGIDGIEC 773 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K + + IPVI +TA ++ + GG ++YISKP S + + ++ I Sbjct: 774 CRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLVARVRNLI 829 >gi|229590533|ref|YP_002872652.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens SBW25] gi|229362399|emb|CAY49304.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens SBW25] Length = 248 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I ED + ++ SG+ Q +G ALEL + KPD++++D+ + + G + Sbjct: 21 ILIAEDEPEIADILSAYLKRSGFQTAQALDGRRALELHQSLKPDLVLLDVLMPNLDGWMV 80 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+ PVI +TA D+ + G + YI KP + + + + + + Sbjct: 81 LAEIRHRG---TTPVIMLTAQDQDMDKLMGLRIGADDYIVKPFNPAEVVARTQAVLRRS 136 >gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131] gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131] Length = 237 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED +L D ++ + Y G + ++ +QH+P +I++D+ L + G+ + Sbjct: 11 ILVVEDEPKLGQLLFDYLQAANYQPALIARGDQVIDYVKQHQPALILLDLMLPGMDGISV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++ ++P+I VTA + D + G + YI KP S + +K + Sbjct: 71 CRELRK---FSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRR 125 >gi|307153836|ref|YP_003889220.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306984064|gb|ADN15945.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 472 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 63/116 (54%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+++ +++ GY + N AL+ PD+I++DI++ E+ G + Sbjct: 13 ILIVDDQANNLRILSEILAKKGYKIRKAINANSALKAVYSTLPDLILLDIRMPEMDGYQF 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IK D++ EIP+I ++A + + + G YI+KP + M I+ + Sbjct: 73 CERIKADAQTSEIPIIFLSALDEVFSKVKAFQVGGVDYITKPFQEAELMARIENQL 128 >gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D + L ++ G+ + +G +AL R+ P + ++D + I+GL++ Sbjct: 8 ILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWNMPIITGLDV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++++ IPVI +TA D + G + +ISKP ++ + +K + + Sbjct: 68 CRRLRDTGN--RIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRS 124 >gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica serovar Dublin] Length = 248 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ ++ R + +GY+ +G + L LA Q +II+DI L + G + Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + P I +TA D + + G Y+ KP S + ++ + + Sbjct: 84 VLRALRTAHQS---PFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQ 139 >gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134] gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + SG++ R+G++ L AR+ D+I++D+ L + G Sbjct: 2 RILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLPGMDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + ++ PV+ +TA D + + G + Y+ KP + + + I+ + Sbjct: 62 VLRELRRE---RDTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRR 117 >gi|116326604|ref|YP_796525.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|3687663|gb|AAC62213.1| LcoR [Lactococcus lactis] gi|76574958|gb|ABA47427.1| response regulator [Lactococcus lactis] gi|116108972|gb|ABJ74094.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 222 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K +++V+D + + L +E Y + +G++A++ + D+I++D+ + ++ G Sbjct: 1 MKNILLVDDEQRMLDLLGLYLEGDIYHCEKEISGVQAIKRVAKGNFDLILLDVMMPDLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I+E EIP+I +TA D K G + YI+KP +I + I+ + Sbjct: 61 WTVCKNIRE---FSEIPIIMLTARGQNTDVSFGLKNGADDYITKPFDETILLARIEAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++I+ED + + +GY+ G + L LARQH D++I+D+ L E+ G Sbjct: 2 RLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPELDGWT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ +S + ++ +TA D + G + Y+ KP + I+ + Sbjct: 62 VLQRLRAESATR---IMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR 117 >gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 249 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++V+D L + +G+ +G AL+ + PD++++D+ L ++ G Sbjct: 15 AHLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGF 74 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E P++ +TA D+ + G + Y++KP L + I+ + Sbjct: 75 TVARRLRERDVT--TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRR 132 >gi|309798826|ref|ZP_07693089.1| response regulator SaeR [Streptococcus infantis SK1302] gi|308117552|gb|EFO54965.1| response regulator SaeR [Streptococcus infantis SK1302] Length = 205 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K +++V+D + + + +GY +G+EALE+ ++ D+II DI + + Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVFVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G ++ ++ + + P + +TA + D+ G + +I+KP S + + + Sbjct: 61 GYDLISEV--QYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNIL 118 Query: 121 GE 122 Sbjct: 119 HR 120 >gi|326791336|ref|YP_004309157.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542100|gb|ADZ83959.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 237 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++IVED + + Y L+ + G EAL + H PD+I++D+ L ++ Sbjct: 1 MNKTSILIVEDEQNICNFIATTLNAHEYKTLRCQTGKEALAIIPSHCPDLILLDLGLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ ++E P+I ++A + + ++ + G + YI+KP S + I+ Sbjct: 61 DGLEVLTSVRE---WSSTPIIVISARSQEAEKVQALDLGADDYITKPFGTSELLARIRTA 117 Query: 120 IGEA 123 I + Sbjct: 118 IRHS 121 >gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I+ED + + ++ GY + NG E LE A + + D+I++D+ L E+ Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++ + + ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196] gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291] gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196] gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291] Length = 244 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59 + V+I++D++ L + +E A+ G E L L +++ ++I+DI + +I Sbjct: 12 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 71 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I+E IPVI +TA + D+ + G + Y++KP S++ M + Sbjct: 72 DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 128 Query: 120 IGE 122 I Sbjct: 129 IRR 131 >gi|254560791|ref|YP_003067886.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4] gi|254268069|emb|CAX23941.1| hypothetical protein METDI2339 [Methylobacterium extorquens DM4] Length = 1937 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V++V+D+ N+ +E G L NG +++ L + + D +++DI + + G Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDSIALLKSNPNIDAMLVDIMMPGMDGY 1854 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ ++ + +P+IAVTA AMKGD E+ + G Y+SKPI + + ++ + Sbjct: 1855 ETMRAIRAEASFRSLPLIAVTAKAMKGDREKCLEAGASDYVSKPIDMDQLLAVLRVQLAR 1914 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ + + +L G+ L ++G AL LA + KP I +DI L ++ G + Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +K D + IP+ ++ ++R + G ++ KP+ M +++ Sbjct: 1590 LDLLKNDPRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640 Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED+E L+ ALE + D I+D+ L +I G Sbjct: 1650 RNLLLVEDDENQRASITALLSEEDVKIFGVGTASAALEALTGGRFDCAIIDLGLPDIGGS 1709 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E+ +QI+ + +E+P+I T + EE+ + I K Sbjct: 1710 ELIEQIRASQDGEELPIIVYTGRELTAAEEQQLRHTASTIILK 1752 >gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603] gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603] Length = 244 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++ + G+ NG EALE+ + + I+DI + ++ G+E+ Sbjct: 18 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIMMPQMDGIEL 77 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 78 CRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 132 >gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 64/120 (53%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ ++ R + G+ +G AL LA + PDV+++D+ L ++ G+E Sbjct: 2 RVLVVDDDMQIIRAMRINLRARGHDVDTAADGASALRLAADNHPDVVLLDLGLPDMEGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++P+I ++A G++ R G + Y++KP + + ++ + Sbjct: 62 VIQRLR---GWSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRS 118 >gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 816 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++ ED +N ++ L+ G+ NG EA+E ++ DV++MD+ + + GL Sbjct: 536 RHVLLAEDGVVNQQVTVALLTKRGHPVEVVENGEEAVEAVQRGDFDVVLMDVHMPVMDGL 595 Query: 63 EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + I+E IP+IA+TA A K D ER G + Y++KP + +++ Sbjct: 596 AAARMIRERERNTGGHIPIIALTASATKADRERCMAAGMDDYVTKPFRAAELYRAVEQ 653 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59 V++V+DNE N ++ ++++ G + NG EAL + P + ++D+ + E+ Sbjct: 392 VLLVDDNETNRRITQEILVNWGMVPTLASNGAEALAALDRAIAEGVPPRLALLDVFMPEM 451 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G E+ ++I+ EL + ++ +++ E R+ + G + KPI S + + + Sbjct: 452 DGFELARRIRTRQELAQTRILMLSSAERTDGEARMHELGISRLLMKPIKQSDLLNAVTEA 511 Query: 120 IG 121 +G Sbjct: 512 LG 513 >gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 233 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+DNE + +E Y +G EAL + D+II+DI ++ I G+ Sbjct: 4 KKILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALLRIINNNFDLIILDIMMEGIDGM 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I++ + P+I V+A ++ D+ + G + YISKP SL I ++ Sbjct: 64 ELCSMIRDRV---DCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRR 120 >gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1333 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 2/120 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 V++VEDN +N+++ R ++E G + NG EAL+L + D+++MD+Q+ + G Sbjct: 985 VLVVEDNSINLEMARLILEREGALVNAAGNGREALDLLQARPDAFDIVLMDLQMPVMDGF 1044 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + ++E ++LQ +PVIA+TA A+ D ER G +ISKP + + T++ ++ Sbjct: 1045 EAVRLMRERADLQAVPVIALTAGALPSDRERAHAVGMSDFISKPFEVEHLVRTVRAHVQR 1104 Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 14/123 (11%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-----LARQHKPDVIIMDIQLQE 58 V++V+D+ L + + + G+ + A+E A D +++D Q+ Sbjct: 829 HVLVVDDHALQRAVLSEAAASLGWRVEAVASSDAAIERTVAQAAAGAPFDALVLDWQMPG 888 Query: 59 ISGLEITKQIK-------EDSELQEIPVIAVTAFAMKGDEERIRKGGC--EAYISKPISL 109 GL + D E+P + +T + D R +A + KPI Sbjct: 889 RDGLATLALLHRRLAECAADGVFAEMPPLVMTVAPSEEDALRREPAAASIDAVLCKPIMA 948 Query: 110 SIF 112 S Sbjct: 949 STL 951 >gi|163851098|ref|YP_001639141.1| histidine kinase [Methylobacterium extorquens PA1] gi|163662703|gb|ABY30070.1| Histidine kinase [Methylobacterium extorquens PA1] Length = 1937 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V++V+D+ N+ +E G L NG +++ L + + D +++DI + + G Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDSIALLKSNPNIDAMLVDIMMPGMDGY 1854 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ ++ + +P+IAVTA AMKGD E+ + G Y+SKPI + + ++ + Sbjct: 1855 ETMRAIRAEASFRSLPLIAVTAKAMKGDREKCLEAGASDYVSKPIDMDQLLAVLRVQLAR 1914 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ + + +L G+ L ++G AL LA + KP I +DI L ++ G + Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +K D + IP+ ++ ++R + G ++ KP+ M +++ Sbjct: 1590 LDLLKNDPRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640 Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED+E L+ ALE + D I+D+ L +I G Sbjct: 1650 RNLLLVEDDENQRASITALLSEEDVKIFGVGTASAALEALTGGRFDCAIIDLGLPDIGGS 1709 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E+ +QI+ + +E+P+I T + EE+ + I K Sbjct: 1710 ELIEQIRASQDGEELPIIVYTGRELTAAEEQQLRHTASTIILK 1752 >gi|22536576|ref|NP_687427.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010502|ref|NP_734897.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76787873|ref|YP_329113.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76799057|ref|ZP_00781250.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77406449|ref|ZP_00783506.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408785|ref|ZP_00785515.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77411642|ref|ZP_00787982.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413961|ref|ZP_00790135.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533411|gb|AAM99299.1|AE014209_12 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23094855|emb|CAD46073.1| gbs0429 [Streptococcus agalactiae NEM316] gi|76562930|gb|ABA45514.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76585594|gb|EAO62159.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77159997|gb|EAO71134.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77162286|gb|EAO73257.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77172630|gb|EAO75769.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174951|gb|EAO77763.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744355|gb|EFV96715.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + + R +E +GY +G+EAL+ +++ D+II DI + ++ Sbjct: 1 MTQKLLLVDDEFEIIDINRRYLEQAGYEVSVAADGIEALKEVDENRFDLIISDIMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++ P + +TA + D+ G + +ISKP S + +K + Sbjct: 61 GYDFISEV--LVREPNQPFLFITAKVSEPDKIYSLSMGADDFISKPFSPRELVLRVKNIL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++V+D R + G +G+EAL LA DV+++DI L +S Sbjct: 1 MAARVLVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++++ D PV+ ++A + D+ G + Y+ KP S + + ++ + Sbjct: 61 GYRVLERLRADDVA--TPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|194292019|ref|YP_002007926.1| response regulator in two-component regulatory system ompr family [Cupriavidus taiwanensis LMG 19424] gi|193225923|emb|CAQ71870.1| Response regulator in two-component regulatory system ompR family [Cupriavidus taiwanensis LMG 19424] Length = 246 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L +E SG NG E + D++++D+ L GL Sbjct: 6 HILIVDDDREIRELVAAYLERSGMRVSLAANGREMRAALDKGSVDLVVLDLMLPGEDGLA 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ E + +PV+ +TA + D + G + Y+ KP + + I+ + Sbjct: 66 LCRDLRA-GERRNLPVLMLTARNEEADRILGLEMGADDYLVKPFAARELLARIRSVLRR 123 >gi|189467801|ref|ZP_03016586.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM 17393] gi|189436065|gb|EDV05050.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM 17393] Length = 1364 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED E + ++ +E Y + +NG EA + PD++I DI + E+ GL Sbjct: 1113 RILIVEDEEEILSYLKEELEGD-YRIMTRKNGREAYDTILADTPDLVISDIMMPEMDGLS 1171 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + ++IK+++ + +PVI +TA + D G +AY+ KP + + TI I Sbjct: 1172 LCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLI 1228 >gi|149920915|ref|ZP_01909376.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149818187|gb|EDM77642.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 289 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 ++++V+D+ ++ +E GY Q RNG EAL+L D++++D+ + E Sbjct: 35 RLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMPE 94 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 I G ++ ++++ + PV+ ++A + + D + G + Y++KP S +K Sbjct: 95 IDGFDLVRRLR--LRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVKV 152 Query: 119 YIGE 122 + Sbjct: 153 LLRR 156 >gi|89070625|ref|ZP_01157905.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516] gi|89043772|gb|EAR49974.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLI-ETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 KK+++V+D+E + + + T + + NG EA+ A++ D++I+D+ L + G Sbjct: 5 KKILLVDDDEDIREALSEQLVMTEDFDVFEAANGSEAMTKAKEQHHDLVILDVGLPDTDG 64 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + +++ P++ +T D+ G Y++KP + + I+ + Sbjct: 65 RELCRLMRKQGVKA--PILMLTGHDSDSDQILGLDSGANDYVTKPFKFPVLLARIRAQLR 122 >gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19] gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19] Length = 1140 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 75/126 (59%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56 +K+++VED+ N+ ++ E G + RNG EALE+ D+++MD+ + Sbjct: 1015 RKILLVEDDVRNVYAVTNIFEPLGAVMSIARNGREALEVLESTQGDPNQAVDLVLMDVMM 1074 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ GL TK+I+E+ + +++PVI +TA AMK D+ER + G Y++KPI + + + Sbjct: 1075 PEMDGLTATKKIRENKDWRKLPVIMLTAKAMKDDQERCIEAGANDYMAKPIDVDKLVSLV 1134 Query: 117 KKYIGE 122 + ++ + Sbjct: 1135 RVWMPK 1140 Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ ++ DL ++ L +A+ ARQ+ P I++D+ L + SG Sbjct: 746 SRSILVVEDDPSFARILYDLAHDLDFLCLVAHTAEDAMATARQYTPSAIVLDVGLPDHSG 805 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFM-------E 114 L + ++K D + IPV V+A G Y+ KP+ + Sbjct: 806 LSVLDRLKRDVRTRHIPVHVVSAGD---YAHTALSLGAVGYMLKPVKREQLIDAFKGLEA 862 Query: 115 TIKKYIG 121 +++ + Sbjct: 863 RLEQQMR 869 Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 45/95 (47%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ V+IVED+E+ L+++ + E LE + D +++D+ L + SG Sbjct: 868 MRHVLIVEDDEVQRHAMCKLLQSQDVECVAVGTAAECLEKLKDQTFDCMVLDLSLPDASG 927 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 + + + ++ PVI T + D+E+ + Sbjct: 928 YSLLETLSQEEAYAFPPVIVYTGRDISYDDEQRLR 962 >gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 985 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 72/124 (58%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP---DVIIMDIQLQEI 59 +++++VEDNELN ++ L+ G+ +G EA+E + P D+++MD+Q+ + Sbjct: 862 RRILLVEDNELNSEIAVALLSEYGFRVDTAEDGAEAVEKVKNSTPGDYDLVLMDVQMPVM 921 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +G E T++I+ D L I ++A+TA A D+++ G ++SKPI + + T++ Sbjct: 922 NGYEATERIRSLDDPSLAGITILAMTANAFDEDKKKALACGMNGFLSKPIVIEELISTLQ 981 Query: 118 KYIG 121 +G Sbjct: 982 NSLG 985 Score = 98.7 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-----HKPDVIIMDIQLQE 58 K ++V+D+ ++ G + T +G EA+ ARQ I+D +L + Sbjct: 721 KALVVDDDFNTCDSVTKMLVKVGMRSEWTLSGKEAVLRARQSVEMGDAFHAYIIDWRLPD 780 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 ++G+E+T+QI+ + + P+I +TA+ E R G A+ +KP+ +S ET+ Sbjct: 781 MNGIEVTRQIRSLGD--DTPIIILTAYDWSDIEVEARAAGVTAFCAKPMFMSDIRETLMA 838 Query: 119 YIGE 122 IG+ Sbjct: 839 AIGQ 842 >gi|302879220|ref|YP_003847784.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302582009|gb|ADL56020.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 234 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KV++V+D+ + R +E G+ +G + A Q D+ ++D+ + S Sbjct: 6 MKTKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKS 65 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+++ QI+ +PV+ +TA D + G + Y+ KP + I+ + Sbjct: 66 GIDVLVQIRAQGA---MPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAIL 122 Query: 121 GEA 123 + Sbjct: 123 RRS 125 >gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ + + G++ +G A++ A +PD++I+DI L GL Sbjct: 19 RRVLVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 79 EVCRRVQA---ARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135 >gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 239 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 271 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D +L + G+ +G A+ AR+ +PD +++D+ L ++ GL Sbjct: 45 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 104 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ E E+PV+ +TA D G + Y++KP SL + ++ + + Sbjct: 105 VLARLRR--ERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRS 162 >gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759] gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 62/123 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + IVED++ ++ ++ SGY + N + PD++++DI L ++ Sbjct: 1 MAVHIYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSKTAEKVPDLVLLDIMLPDMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLEI K+++ + IP+I VTA + D+ + G + Y++KP + + +K + Sbjct: 61 GLEIVKKLRSRPDTVRIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALL 120 Query: 121 GEA 123 + Sbjct: 121 RRS 123 >gi|154492635|ref|ZP_02032261.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC 43184] gi|154086940|gb|EDN85985.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC 43184] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D E ++ + +E GY + EAL++ ++++D+ + EISG Sbjct: 3 MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKM-DIASYQLLLLDVMMGEISG 61 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +K++ + +IP+I +TA + D G + YISKP S+ + +K + Sbjct: 62 FKMASILKKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLR 121 Query: 122 E 122 Sbjct: 122 R 122 >gi|104782036|ref|YP_608534.1| response regulator [Pseudomonas entomophila L48] gi|95111023|emb|CAK15743.1| putative response regulator [Pseudomonas entomophila L48] Length = 233 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++VED+ +L ++ + + G L+ R+ KPD++I+D+ L + G Sbjct: 1 MPNILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLDEFRRQKPDLVILDLMLPGLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + +++ E Q +P++ +TA D+ + G + Y++KP + + ++ + Sbjct: 61 LQVCRLLRQ--ETQCLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A] gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 240 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED I G+ A +G A++ A Q +PD++IMDI L + GL Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I + + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 73 EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|265752724|ref|ZP_06088293.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] gi|263235910|gb|EEZ21405.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 3_1_33FAA] Length = 1327 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN + + +++ Y +G +A + H+ D+II D+ L +I+G E Sbjct: 1077 TLLLIDDNAELLYIMKEIF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1135 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IK D IPV+ +TA D G + YI+KP + + + I Sbjct: 1136 LCTRIKSDLRFNHIPVVILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1193 >gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 624 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 3/123 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++ EDN +N ++L+E G+ + G ALE R+ + D ++MDIQ+ E+ G+E Sbjct: 375 TVLLAEDNPINQIYVQELLEMDGHEVVVAHTGRRALEALRKKRFDAVLMDIQMPEMDGIE 434 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+ I+ D+ IP++A+TA A+KGD E + G Y+SKP+S + + + Sbjct: 435 ATRAIRSDASGDFDPAIPIVALTAHALKGDRETFLRAGMNEYLSKPVSPADLEAALGRVT 494 Query: 121 GEA 123 G A Sbjct: 495 GGA 497 >gi|228964063|ref|ZP_04125190.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar sotto str. T04001] gi|228795633|gb|EEM43113.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar sotto str. T04001] Length = 896 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ +E + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALEKQHATIITAQNGIECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Verrucomicrobiae bacterium DG1235] Length = 664 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++VED +N +L L+ + G+ NG+EA+E A + D I++DI + ++ G Sbjct: 535 ARILLVEDEPVNRELMDSLLSSLGHKVSVATNGLEAVECASETIFDFILLDISMPKLDGF 594 Query: 63 EITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+++ ++ P++A+TA D++ + G Y+SKPIS + + K++ Sbjct: 595 GAAKRVRALQNQNANTPIVAMTAHVTSEDKDSCFQAGMNDYLSKPISFTKLKGVLAKWLE 654 Query: 122 E 122 Sbjct: 655 R 655 >gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638] gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019] gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299] gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638] gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019] gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1] gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299] Length = 260 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf] gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657] gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf] gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K++ +VED++ K L+ + G+ EAL +K D+ ++DI L + +G Sbjct: 1 MKRIFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNKFDLALIDISLPDGNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IKE Q+IPVI +TA + G + YI+KP + I+ + Sbjct: 61 FTVCTEIKE---TQDIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSALR 117 Query: 122 EA 123 ++ Sbjct: 118 KS 119 >gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 227 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED E ++ + +E GY + + G EA+E ++I++D+ L IS Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GLE+ ++I+ + + IP+I +TA D+ G YI+KP + + I+ + Sbjct: 61 GLEVLRRIRLKNAV--IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|149279746|ref|ZP_01885874.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] gi|149229544|gb|EDM34935.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Pedobacter sp. BAL39] Length = 1300 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ +K + Y L+ +GMEALEL +H +++ DI + ++GL++ Sbjct: 1052 ILLVEDHNDILKYISQELRGE-YFILKANDGMEALELLEKHPVQLVVSDIMMPRMNGLDL 1110 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++IK D IPVI +TA G +AYI KP S+S IK + Sbjct: 1111 CRRIKTDLTYSHIPVILLTAKTSVDSRIEGLGTGADAYIDKPFSMSHLEMQIKSLLR 1167 >gi|126664194|ref|ZP_01735186.1| response regulator receiver domain protein [Flavobacteria bacterium BAL38] gi|126623726|gb|EAZ94422.1| response regulator receiver domain protein [Flavobacteria bacterium BAL38] Length = 120 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 67/119 (56%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++IV+D + + S Y R+G EAL++ + + PD+II+DI + + G Sbjct: 1 MKKILIVDDEPNIVMTLEYTFKKSNYEVFIARDGQEALDILKTNFPDIIILDIMMPMVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +QI++D+ L V+ ++A + D E+ G +AY++KP S+ +E +++ + Sbjct: 61 FATLEQIRKDANLTHTKVMFLSAKNKESDIEKGLALGADAYLTKPFSIKKVVEKVEELL 119 >gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 237 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++++D + + GY Q G E L+LA D++I+DI L ++ G Sbjct: 13 ARVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGH 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ ++PVI +T A + ++ R G Y++KP M ++ + Sbjct: 73 EVLEQLRQ---WSQVPVIMLTVRAGETEKVRALDTGANDYVTKPFGTQELMARVRALLR 128 >gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1] gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia coli UTI89] gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034] gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146] gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252] Length = 260 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|53803652|ref|YP_114696.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53757413|gb|AAU91704.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++++D+ +L + + GY +G L A + + ++D+ L ++G Sbjct: 1 MTRLLLIDDDTALCELLSEYLALEGYAVEAVHDGEAGLAAALSGRYRLALLDVTLPRLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+I+++S L PV+ +TA D + G + Y+ KP + + IK + Sbjct: 61 FEVLKRIRQESSL---PVLMLTARGDDFDRVVGLEIGADDYLPKPFNHRELVARIKAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] Length = 219 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED+ + ++ GY R+G AL + ++D+ L + GLE Sbjct: 2 RVLLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPRLDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +Q++ PV+ +TA D G + Y+ KP ++ ++ + + Sbjct: 62 VLRQLRAAEN--PTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 119 >gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 K+++ +D +L ++ + +GM+AL + + ++D+ + + G Sbjct: 7 KILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDG 66 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + ++I+ + PVI +TA + + + G + YI KP S +K + Sbjct: 67 FALCREIRS---FSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLK 123 Query: 122 EA 123 A Sbjct: 124 RA 125 >gi|325106499|ref|YP_004276153.1| histidine kinase [Pedobacter saltans DSM 12145] gi|324975347|gb|ADY54331.1| histidine kinase [Pedobacter saltans DSM 12145] Length = 1366 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + V++VEDN+ + Y+ L+ R+G+E L+LA + PD+I+ D+ + + G Sbjct: 1110 MHTVLVVEDNDELRTFLAQSLSGE-YLVLEARDGVEGLDLALKEVPDIIVSDVTMPNMDG 1168 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E +K++ IPVI +TA A + + G Y++KP S+ + I+ I Sbjct: 1169 MEFCSLVKKNEVSSHIPVIMLTAMASHLHQVEGLESGANIYLTKPFSVQLLELHIRNLIN 1228 Query: 122 EA 123 A Sbjct: 1229 SA 1230 >gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu007] gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu007] Length = 254 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + + G+ +G EA+ + PDV+++DI L ++ GLE Sbjct: 30 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 89 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++E P + +TA D G + Y++KP SL + ++ + + Sbjct: 90 ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 147 >gi|304398764|ref|ZP_07380635.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304353711|gb|EFM18087.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 231 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++I+ED+ + ++ Y + +G L+ AR+ +PD+I++DI L ++G Sbjct: 4 KRILIIEDDADAAGVLEAYLKRENYEVMIVGDGPGGLDAARRWQPDLILLDIMLPGMNGT 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++ + PVI VTA + D + G + Y+ KP + ++ + Sbjct: 64 EVLAALRRRD---DTPVIMVTAMSDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|322419718|ref|YP_004198941.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M18] gi|320126105|gb|ADW13665.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacter sp. M18] Length = 733 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 1 ML-----KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQ 55 M+ ++++IVED+ + R +E G+ NG+EAL L +Q PD+I+ D+ Sbjct: 1 MMVGGELREILIVEDSATQAEQVRYSLEKHGFAVRTAANGVEALSLMQQKPPDIIVSDVV 60 Query: 56 LQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 + E+ G E +++KED ++IPVI +T+ + D R + G + +I KP + Sbjct: 61 MPEMDGYEFCRRVKEDETYKQIPVILLTSLSDPRDVLRGLECGADNFIVKPYDERYLLSR 120 Query: 116 IKKYIGEA 123 ++ I A Sbjct: 121 LQYLIANA 128 >gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 227 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED ++ ++ GY +G EAL D+I+MDI + +++G E Sbjct: 2 RVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + PV+ +TA D + G + YI KP M I+ I Sbjct: 62 VLEKMRREKN--STPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRR 118 >gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + + ++ GY NG L+ A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E + P+I +TA D G + YI KP ++ + I+ + Sbjct: 61 MEVARRLREK---KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML+K+++V+D + L ++ + +G EAL D+ I+DI L +IS Sbjct: 1 MLEKILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL I + I+ PVI ++A + D+ G + YI+KP + +K + Sbjct: 61 GLSICQSIRSKEYTY--PVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ ++ + +E Y + +G EA E + ++++D+ + +ISG+E Sbjct: 2 KLLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMIPKISGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + I+ S +P+I V+A D+ G + YI+KP S++ + IK I + Sbjct: 62 VMQHIRTHS---TVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRS 118 >gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 239 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++ + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICRRARAMARY--TPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|319648303|ref|ZP_08002520.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2] gi|317389938|gb|EFV70748.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2] Length = 257 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+MIVED+E KL RD +E GY + + LE+ Q KPD+ ++DI L G Sbjct: 29 MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDG 88 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QI++ S P+I ++A + + D+ + G + YI KP S + + IK I Sbjct: 89 YYWCRQIRQHS---TCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIR 145 Query: 122 EA 123 A Sbjct: 146 RA 147 >gi|282898494|ref|ZP_06306484.1| Response regulator receiver (CheY) modulated Serine phosphatase [Raphidiopsis brookii D9] gi|281196660|gb|EFA71566.1| Response regulator receiver (CheY) modulated Serine phosphatase [Raphidiopsis brookii D9] Length = 377 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 54/117 (46%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ L + ++E Y + T NG E + A P +II D + E+SGLE+ Sbjct: 4 ILVIDDDSSIQILLKRILEKQHYQVITTSNGREGILQAVASPPALIICDWMMPELSGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 IK L I +T+ D + G + +ISKPI + ++ + Sbjct: 64 CNFIKNHPNLSSTFFILLTSLDSVSDRVKGLDSGADDFISKPIEQNELQARVRAGLR 120 >gi|237711465|ref|ZP_04541946.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] gi|229454160|gb|EEO59881.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 9_1_42FAA] Length = 1357 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++EDNE L Y + NG E +++A PD+II DI + G Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGVDVAISKIPDLIISDIMMPVKDGFTCC 1166 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E IP++ +TA A D + K G + Y+ KP + + ++ I Sbjct: 1167 RELREQLRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221 >gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] Length = 268 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VED + +E G+ G EAL + D ++DI L G+ Sbjct: 47 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 106 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++E +P++ ++A + D+ G + Y+ KP S+ + ++ I Sbjct: 107 VLRSLRERGI--SLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRR 163 >gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 65/116 (56%), Gaps = 2/116 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++ED+ ++ + + GY +G L+LAR +PD++++D+ L + Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 GLE+ ++I+++ E+P++ ++A + D+ + G + Y+ KP L + I Sbjct: 61 GLEVVREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARI 114 >gi|78048520|ref|YP_364695.1| putative two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289668239|ref|ZP_06489314.1| putative two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294625107|ref|ZP_06703752.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665487|ref|ZP_06730771.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325926516|ref|ZP_08187833.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|78036950|emb|CAJ24648.1| putative two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292600571|gb|EFF44663.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604741|gb|EFF48108.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325543088|gb|EGD14534.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 229 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV++VED+ + + + G+ +G A++L RQ PD++++D+ L ++SG+ Sbjct: 4 KKVLLVEDDSDSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKLSGI 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ I+ + PVI VTA + ++ + G + Y+ KP S + + + Sbjct: 64 EVLSTIRRAG---DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRR 120 Query: 123 A 123 + Sbjct: 121 S 121 >gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551] gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551] Length = 245 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L D + + Y +G A++ R+ P+++++D+ L GLEI Sbjct: 28 ILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 87 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ ++P++ VTA + D + G + YI KP S + IK + Sbjct: 88 CREVRA---FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 142 >gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED + + ++ GY NG L+ A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E + P+I +TA D G + YI KP ++ + I+ + Sbjct: 61 MEVARRLREK---KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium 3_1_46FAA] Length = 239 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 VM+V+DN+ + +L++ GY + +GMEAL L Q+ D+I++D+ + ++GL Sbjct: 11 VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++E IPVI ++A + D+ G + Y+ KP + + M +K ++ Sbjct: 71 LMKLREKYR---IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRR 125 >gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 305 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + + +E SG+ L +G AL +A + PD+I++D + + G + Sbjct: 11 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDLILLDAVMPGMDGFDT 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++K ++ + ++PV+ +T R + G Y++KPI++ I+ ++ A Sbjct: 71 CARLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129 >gi|256379954|ref|YP_003103614.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924257|gb|ACU39768.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++V+D ++ R + GY L +G AL A + KPDV+++D+ L ++ G Sbjct: 1 MTKVLVVDDEPQIVRALRINLSARGYQVLTAHDGAAALRAAAEGKPDVVVLDLGLPDVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ +P+I ++A A D+ G + Y++KP + + ++ + Sbjct: 61 TEVIAGLR---GWTTVPIIVLSARADSTDKVEALDAGADDYVTKPFGMDELLARLRAAVR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ] gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ] Length = 267 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALE-LARQHKPDVIIMDIQLQEISG 61 ++++V+D + L + + GY +G + LE L + + DV+++D+ + G Sbjct: 29 ARILVVDDEQDLRALLQRYLSDQGYAVR-ALDGGQHLERLLGRERFDVLVLDVMMPGEDG 87 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + ++++ E IP++ +TA D + G + Y+ KP + I+ I Sbjct: 88 LSLCRRLRARGET--IPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIR 145 Query: 122 E 122 Sbjct: 146 R 146 >gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED E ++ G+ G E L+ ++ D++++D+ L + G E+ Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 62 RQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 115 >gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 223 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 61/116 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I +D+ +D +E SGY + +NG EAL L ++P +++ DI++ + G + Sbjct: 5 ILIADDDPGIRLAVKDYLELSGYSVITAQNGQEALSLLETYRPHLLVSDIKMPQKDGYTL 64 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +++ E + +PV+ +T K + + + GC+ Y+ KP + I+ + Sbjct: 65 VRHLRQLPEFRLLPVVFLTERGTKEERIQGYEVGCDVYLPKPFEMDELKAVIRNLV 120 >gi|206967994|ref|ZP_03228950.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134] gi|206736914|gb|EDZ54061.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134] Length = 896 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMENIRMNLGLSEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 578 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ EDN +N ++ +I G ++G EA+E + D+I MD Q+ E+ G Sbjct: 454 ARVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFTRQPYDLIFMDCQMPEMDGY 513 Query: 63 EITKQIKEDS--ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T+ I++ + VIA+TA AM G E G + Y+SKP +L E I K+ Sbjct: 514 QATRAIRQRELGSGRHTTVIALTAHAMAGAREHCLSAGMDDYLSKPFNLEQLQELIVKW 572 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+DN++ + +L G+ + G L+ + ++++D++L ISG+E+ Sbjct: 7 ILIVDDNQVVCDVLTELFRNEGFDSWGVATGEACLDEVTRASCKLVMLDVRLPGISGIEV 66 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGE 122 + I+ D VI +T+ + + G + Y+ KP L + + T+ K + Sbjct: 67 LEAIRRD--HPRTEVIIMTSHVSLETAVQALRLGAQDYLFKPFDDLEMVIATVNKALER 123 >gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 220 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + R + G+ +G AL A D++++D+ L + GL+ Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKRDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PV+ VTA D + G + Y+ KP L ++ I Sbjct: 62 VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 >gi|115375443|ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] gi|115367570|gb|EAU66544.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1] Length = 965 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN R L++ + + ++G A + PD+++ D+ + + G Sbjct: 609 RVLVADDNSDMRGYIRSLLDPT-CVVETVQDGEAAYQAILDSPPDLVLSDVMMPRLDGFG 667 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E+ + Q +P+I ++A A + + G Y+ KP S + I+ + A Sbjct: 668 LLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRLA 727 >gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 220 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED+ + + GY ++G AL D+ ++D+ L + GLE Sbjct: 2 RLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ +PV+ +TA D G + Y+ KP L+ ++ + + Sbjct: 62 VLRRLR--GSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRS 119 >gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 218 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I ED E +E +GY + +G +AL+ A + D++++D+ L I G Sbjct: 1 MTRILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ + +PVI +TA D G Y++KP + ++ + Sbjct: 61 FEVLRTLR--GQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLR 118 Query: 122 E 122 E Sbjct: 119 E 119 >gi|297162476|gb|ADI12188.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 258 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 65/121 (53%), Gaps = 3/121 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +++VED+E+ R L+E G+ +G+ LEL R+ +PD++++D+ L E+ G+ Sbjct: 24 AHLLLVEDDEVIRNTVRMLLERYGFTVSTAGDGLTGLELFRERRPDLLLLDVMLPELDGI 83 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++E S P++ ++A D + G + Y+ KP ++ + I+ + Sbjct: 84 GLCRRVRELSLA---PILMMSARGDALDVVSGLEAGADDYVVKPCESAVLVARIRSLLRR 140 Query: 123 A 123 A Sbjct: 141 A 141 >gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 242 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I+ED + DL E +GY +G L A + ++++D+ L + G + Sbjct: 10 ILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQYGLVLLDLMLPGMDGFTV 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+E + +P+I ++A D K G + YI KP S+ + + I+ + + Sbjct: 70 CDKIREKD--KSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRS 126 >gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] Length = 932 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+ V+DN N++L +L++ + NG +A+ L++ + D+I+MDIQ+ + GLE Sbjct: 662 RVLAVDDNPANLRLVSELLKEMHVKVVTVDNGADAIRLSQTSQFDLILMDIQMPGMDGLE 721 Query: 64 ITKQIK-EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 TK+++ +S + PV+A+TA A + R G + Y++KP+S + I +++ Sbjct: 722 ATKRLRSSESREERTPVVALTAHAANEQKSRFLLAGMDDYLTKPVSENELRHIIDRWVTR 781 >gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] Length = 224 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++I+ED E + ++ GY +G + LE A + D+I++D+ L ++G Sbjct: 1 MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ + P+I +TA D G + Y+ KP ++ + I+ Sbjct: 61 MEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|220915750|ref|YP_002491054.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953604|gb|ACL63988.1| response regulator receiver protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 123 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ + + R ++ S Y + R+G E +E AR +PD+I+MD+ + + G Sbjct: 4 KKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGVEKARAERPDLILMDVVMPRMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++++E E IPVI VT E GC Y++KPI+ + ++ +G+ Sbjct: 64 EACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCLGQ 123 >gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ +F + +E SGYI +G A + + +I++D L ++ GL Sbjct: 2 RLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGLG 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ IP++ +TA D+ G + Y+ KP+ L + I+ + Sbjct: 62 LCQRLRAHGYT--IPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRR 118 >gi|167036030|ref|YP_001671261.1| response regulator receiver protein [Pseudomonas putida GB-1] gi|166862518|gb|ABZ00926.1| response regulator receiver protein [Pseudomonas putida GB-1] Length = 121 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 67/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ M + +E GY L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+Q+ +D E IPVI VT + D + G +++KP+ + +K+ +G Sbjct: 61 FQATRQLSKDPETSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEDALIAKLKEVLG 120 >gi|108760607|ref|YP_628793.1| response regulator [Myxococcus xanthus DK 1622] gi|108464487|gb|ABF89672.1| response regulator [Myxococcus xanthus DK 1622] Length = 169 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 73/121 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++V+D + +++ + +E G+ RNG+EA+E A + +PD+I+MD+ L + G Sbjct: 42 KRVLVVDDFDDAREMYAEYLEFVGFEVDTARNGVEAVEKASEGEPDIILMDLSLPVMDGW 101 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T++IK+DS ++IPV+A+T + G+ E R G + +++KP I+ + Sbjct: 102 EATRRIKQDSRTRDIPVMALTGHVLAGNAEHARDAGADEFVAKPCLPQDLENKIRNMLKP 161 Query: 123 A 123 + Sbjct: 162 S 162 >gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 235 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V+ VED+++ + + +E G+ +G+ LE R ++PD+ ++D+ + + G+ Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGVS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP ++ + I+ + Sbjct: 66 LCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121 >gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 241 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++++V+D + +E G+ +G + + A++ PD++I D+ + G Sbjct: 14 SPRLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKAQEMLPDLVISDVMMPRCDG 73 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + K+++ED L PVI +TA M D G + YI KP Sbjct: 74 YGLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEEL 124 >gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 543 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 5/120 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQEIS 60 V+IVED L R ++E +G +G EA+E+ ++ D+++MD+ + +S Sbjct: 419 HVLIVEDAPSIQFLVRRILEGAGATVTSAGDGAEAIEMLLADQERPFDLVLMDMHMPIMS 478 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + + +++ + EIP+IA+TA AM GD + GC+ Y+ KPI ++ + KY+ Sbjct: 479 GYDAAQALRQ--KGCEIPIIALTASAMTGDRIKCLAAGCDDYLPKPIDQRKLLQMVAKYV 536 >gi|85707059|ref|ZP_01038148.1| DNA-binding response regulator [Roseovarius sp. 217] gi|85668500|gb|EAQ23372.1| DNA-binding response regulator [Roseovarius sp. 217] Length = 240 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +E +G A R+ ++ K D+I++D+ + GL Sbjct: 6 HILVVDDHREIRDAVTRYLEKNGMRATSARDAVDMDAKLANGKYDLIVLDVMMPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ S +P++ +TA + D + G + Y++KP + + IK + + Sbjct: 66 VCRRL---SASGSVPILMLTALGEETDRIVGLEIGADDYLAKPFNPRELVARIKAILRRS 122 >gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579] gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L] gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W] gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1] gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187] gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI] gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579] gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L] gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W] gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1] gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDN +L R+ + + G E + L +++ D++++D+ L +I G Sbjct: 1 MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K ++ S ++P+I +T + E + + G + YI+KP ++F++ ++ + Sbjct: 61 YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|330972643|gb|EGH72709.1| response regulator receiver [Pseudomonas syringae pv. aceris str. M302273PT] Length = 121 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 68/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ M ++E G+ L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+Q+ +D + IPVI +T + D+ ++ G Y++KP+ M+T+ + Sbjct: 61 FQATRQLTKDPDTTNIPVIMITTKDQETDKVWGKRQGARDYLTKPVDEETLMKTLNAVL 119 >gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 235 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + ++++ED+ ++ + GY +G E L ++H D++++D+ + ++ Sbjct: 1 MSQHILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLMMPKVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I+ S +P++ ++A D+ G + Y++KP S+ I+ I Sbjct: 61 GMEVIRRIRTHSA---VPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAI 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++VED+ ++ R +E +G+ + T +G+ ALELAR P + ++D+ L ++S Sbjct: 1 MSRPILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSENPVLAVLDLMLPDLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + +++ + +IPVI +T+ + + + G + YI KP S + ++ + Sbjct: 61 GEAVCREL---TASTDIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVL 117 Query: 121 GEA 123 A Sbjct: 118 KRA 120 >gi|187779051|ref|ZP_02995524.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC 15579] gi|187772676|gb|EDU36478.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC 15579] Length = 234 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVED+ + ++ + GY A Q +G+EA+E + + ++IMD+ + + G+E Sbjct: 5 KILIVEDDININNMIKESLIKEGYDAGQAFHGLEAVEKFQGEEWHMVIMDVMMPVMDGIE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++I+E S++ +I ++A D+ G + YI KP S+S + +K I A Sbjct: 65 AMRRIREKSKVS---IIILSAKGEDSDKIIGLGMGADDYIVKPFSISELIARVKSNIRRA 121 >gi|91215802|ref|ZP_01252772.1| two component transcriptional regulator, winged helix family protein [Psychroflexus torquis ATCC 700755] gi|91186268|gb|EAS72641.1| two component transcriptional regulator, winged helix family protein [Psychroflexus torquis ATCC 700755] Length = 225 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 1 MLK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 M K ++I ED KL + + GY L +NG E L+L + + +I++D + Sbjct: 1 MNKGNYTILIAEDQVDIAKLLKKGLTEEGYQCLVVKNGEEVLKLVKHNSISLILLDWMMP 60 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++ G+++ KQ++ SE P+I +TA D K G YI KP + + I+ Sbjct: 61 KLKGIDVCKQLR--SEHISTPIIFLTAKDTIEDTIEGLKSGANDYIKKPFNFEELLARIE 118 Query: 118 KYIG 121 ++ Sbjct: 119 THLR 122 >gi|83310938|ref|YP_421202.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945779|dbj|BAE50643.1| Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Magnetospirillum magneticum AMB-1] Length = 369 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 68/120 (56%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-QHKPDVIIMDIQLQEISG 61 +++V+D+ ++ L +L+ + Y +G L++A +PD++++D+ + +I G Sbjct: 10 ATILVVDDSPDDVWLMSELL-KADYRVKVANSGERGLKIAMGNERPDLVLLDVMMPDIDG 68 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+K DS +IPVI +T+ +E+R G YI+KP S SI + +K ++ Sbjct: 69 YEVCRQLKTDSRTHDIPVIFLTSKTRMAEEKRGLDMGAVDYITKPFSPSIVLARVKAHLR 128 >gi|329955010|ref|ZP_08295991.1| putative transcriptional regulatory protein RprY [Bacteroides clarus YIT 12056] gi|328526300|gb|EGF53315.1| putative transcriptional regulatory protein RprY [Bacteroides clarus YIT 12056] Length = 238 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED E + +D +E + +G E L +PDV++ D+ + + G E Sbjct: 5 KVLLVEDEETLAMIIKDTLEGQNFTIHTAADGEEGLRRFFDLRPDVLVADVMMPRMDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ + PV+ +TA + D + G Y+ KP + + IK G A Sbjct: 65 MVRRIRQTD--KHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALAGRA 122 >gi|256839706|ref|ZP_05545215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|256738636|gb|EEU51961.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL+ +++++D+ ++EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK-DLTVYNLLLLDVMMREISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +++D + P+I +TA + D G + YISKP S+ + +K + Sbjct: 64 MARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122 >gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K+++V+D + L ++ GY + NG +AL+ + D+ I+DI L ++ Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G +I ++I+E PVI +TA GD+ + YI+KP + + +K + Sbjct: 61 GFQICQKIREKFYF---PVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEMVARVKAQL 116 Query: 121 GE 122 + Sbjct: 117 RQ 118 >gi|261369014|ref|ZP_05981897.1| phosphate regulon response regulator PhoB [Subdoligranulum variabile DSM 15176] gi|282568888|gb|EFB74423.1| phosphate regulon response regulator PhoB [Subdoligranulum variabile DSM 15176] Length = 230 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 60/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 + IVED+ +L + ++T+GY A +G R+ PD++I+D+ L + G +I Sbjct: 2 IYIVEDDASIRELEQYALQTNGYEATGCEDGASFWAALRESAPDLVILDVMLPDEDGYQI 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ D + IPVI VTA + D + G + Y+ KP + F+ +K + Sbjct: 62 LNKLRADPATRTIPVIMVTAKTSEIDVVKGLDHGADDYLCKPFGIMEFISRVKAVLRR 119 >gi|167757089|ref|ZP_02429216.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402] gi|167703264|gb|EDS17843.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402] Length = 223 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++++D +++ ++ GY+ + EAL+ PD+I++DI + E++G Sbjct: 1 MYKILMIDDERDILEMLALQFQSEGYLVYLANDANEALKQL-SVLPDLILLDINMPEMNG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ I+E P+I +TA D G + YI+KP S+ ++ ++ Sbjct: 60 LELCTMIREHV---NCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ + + GY R G E L LAR + ++I+D+ L ++GL++ Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLPGMTGLDL 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + ++PV+ +TA + D+ K G + Y++KP + + I+ + Sbjct: 66 CQSLRAEGG--QVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRR 121 >gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630] gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile] Length = 233 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEI 59 + V+I++D++ L + +E A+ G E L L +++ ++I+DI + +I Sbjct: 1 MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G ++ K+I+E IPVI +TA + D+ + G + Y++KP S++ M + Sbjct: 61 DGFQVLKKIRE---TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSL 117 Query: 120 IGE 122 I Sbjct: 118 IRR 120 >gi|20093163|ref|NP_619238.1| response regulator receiver [Methanosarcina acetivorans C2A] gi|19918506|gb|AAM07718.1| response regulator receiver [Methanosarcina acetivorans C2A] Length = 123 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 56/121 (46%), Positives = 83/121 (68%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++IVEDN +NM+L DL+E G+ + +G++ALE + K D+I++D+QL ++ G Sbjct: 3 MKEILIVEDNPMNMELILDLLEFYGHRVTEAEDGIKALERLAEKKFDIILLDMQLPKMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ +IK++ +IPVIAVTA AMKG EE + GC YISKPI + F I KY+G Sbjct: 63 LEVLDRIKKNPATADIPVIAVTAHAMKGSEEHFIEMGCVDYISKPIDIHRFRSLIDKYLG 122 Query: 122 E 122 E Sbjct: 123 E 123 >gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 67/122 (54%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K+++V+D+ ++L ++ GY + NG EAL PD ++I+D+ + +SG Sbjct: 2 KILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKL-STTPDIALMILDVMMPNMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ K++++DS +IP+I V+A D+ + G + Y+SKP + M ++ + Sbjct: 61 IDVVKEVRKDS---DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L ++ +G +G D+I++D+ L GL Sbjct: 6 HILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + ++ S +IP++ +TA + D + G + Y+ KP S + IK + A Sbjct: 66 LCRNLRAKS---DIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRA 122 >gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++I+ED E + + + GY +G E LEL D+I++D+ L I GLE Sbjct: 2 HILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I +Q + + PV+ ++A D+ G Y++KP I+ Sbjct: 62 ILRQFRTFNT--NTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRR 118 >gi|253569365|ref|ZP_04846775.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841384|gb|EES69465.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1339 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE ++ + + + +NG EALE+ R + D++I DI + ++G E+ Sbjct: 1083 LLVEDNETMLEFMSERL-LEVFTVETAKNGQEALEVLRSRRIDLVISDIMMPVMNGWELC 1141 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IK D +L IPVI +TA + K G EAY+ KP S + I + Sbjct: 1142 KEIKSDMDLSHIPVIFLTAKNDIDSKINGLKIGAEAYVEKPFSFNYLKTQIVSLL 1196 >gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 210 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 14 NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 +L ++ GY + NG +AL + D +I+DI + ++ G+ + K+I++ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRK--- 57 Query: 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 58 TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106 >gi|153870034|ref|ZP_01999517.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp. PS] gi|152073497|gb|EDN70480.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp. PS] Length = 448 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 61/120 (50%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++V+D L ++++E G+ ++G A EL + PD+I++DI + +I Sbjct: 1 MSAHILVVDDEPDIRSLMKEILEDEGFTVSVAQDGKTARELRSEKHPDLILLDIWMPDID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+ + K+ +E + VI ++ + G +I KP+S++ + TIK+ + Sbjct: 61 GISLLKEWRESGMTLDSQVIMISGHGTVETAVEATRLGAYDFIEKPVSIAKLLLTIKRAL 120 >gi|148653952|ref|YP_001281045.1| CheA signal transduction histidine kinase [Psychrobacter sp. PRwf-1] gi|148573036|gb|ABQ95095.1| CheA signal transduction histidine kinase [Psychrobacter sp. PRwf-1] Length = 1609 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ K+ +++ GY A R+G+EA+E+ + +PD++++DI++ + G E+ Sbjct: 1493 ILIVDDSVTVRKVTARMLQRQGYQAHVARDGVEAVEMLQTLRPDLMLLDIEMPRMDGFEV 1552 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ + + +P+I +T+ + +R K G AY+ KP + + I+ I Sbjct: 1553 ATHVRHNQAISHLPIIMITSRSGDKHRQRALKIGVNAYLGKPFQEAKLVALIQNLI 1608 >gi|29348269|ref|NP_811772.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340172|gb|AAO77966.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1337 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDNE ++ + + + +NG EALE+ R + D++I DI + ++G E+ Sbjct: 1081 LLVEDNETMLEFMSERL-LEVFTVETAKNGQEALEVLRSRRIDLVISDIMMPVMNGWELC 1139 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IK D +L IPVI +TA + K G EAY+ KP S + I + Sbjct: 1140 KEIKSDMDLSHIPVIFLTAKNDIDSKINGLKIGAEAYVEKPFSFNYLKTQIVSLL 1194 >gi|330878943|gb|EGH13092.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 254 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + + +L RQ DV+++D+ L + G E Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ IPVI +TA D R G + Y++KP + I + Sbjct: 72 LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127 >gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 896 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|260173200|ref|ZP_05759612.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] gi|315921474|ref|ZP_07917714.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695349|gb|EFS32184.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1315 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 65/116 (56%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +IVED + + + ++ Q NG+ ALE+ +Q +PD+I+ D+ + +++G ++ Sbjct: 1060 LIVEDKQDLREFLKSALKDKFKKIYQAENGLVALEVIKQQQPDIIVSDVMMPQMNGYQLC 1119 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IKE+ + IPVI +TA A + K G +AY+ KP + + + I+ + Sbjct: 1120 KEIKENLNISHIPVILLTARADSESQMLGYKLGADAYLPKPFEMEMLLSVIQNQMR 1175 >gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 14 NMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQIKEDSE 73 +L ++ GY + NG +AL + D +I+DI + ++ G+ + K+I++ Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRK--- 57 Query: 74 LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++P+I +TA + + + G + YI KP S + ++ + Sbjct: 58 TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106 >gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB108] gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB102] gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1] gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB108] gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus 03BB102] gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1] Length = 896 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 220 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + R + G+ ++G AL A D++++D+ L + GL+ Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKRDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ ++PV+ VTA D + G + Y+ KP L ++ I Sbjct: 62 VLRTLRTRGH--QLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 >gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator [Burkholderia sp. 383] gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 223 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R + + Y NG + L LA D++++D+ L E+ G E Sbjct: 2 RILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPEMDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+++ ++ PV+ +TA D+ + G + Y+ KP + + F+ I+ + A Sbjct: 62 VLKRLRAQ---KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRA 118 >gi|13471380|ref|NP_102946.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14022122|dbj|BAB48732.1| probable two-component response regulator [Mesorhizobium loti MAFF303099] Length = 255 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IVED+ ++ + + +G I NG R K D+I++DI L +GL Sbjct: 24 HILIVEDDIEIARMLGETLTENGMIVEIAGNGARMNAALRNQKFDLIVLDIMLPGENGLS 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + +P++ +TA + D + G + Y++KP S I+ + Sbjct: 84 ICRRLRAHT---NVPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRR 139 >gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium tuberculosis H37Rv] gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis AF2122/97] gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis F11] gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 94_M4241A] gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T92] gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM 1503] gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T17] gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 1435] gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis str. Haarlem] gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CPHL_A] gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T46] gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis K85] gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T46] gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CPHL_A] gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T17] gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis K85] gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T92] gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis GM 1503] gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 210] gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN 4207] gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN R506] gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis 94_M4241A] gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu001] gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu002] gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu003] gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu004] gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu005] gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu006] gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu008] gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu009] gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu010] gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu011] gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu012] gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN V2475] gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium tuberculosis H37Rv] gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis] gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis AF2122/97] gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis str. Haarlem] gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis F11] gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 1435] gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T46] gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CPHL_A] gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis K85] gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T17] gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T92] gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis GM 1503] gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis 94_M4241A] gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu001] gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu002] gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu003] gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu004] gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu005] gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu006] gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu008] gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu009] gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu010] gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu011] gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu012] gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CDC1551A] gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis W-148] gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 4207] Length = 257 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + + G+ +G EA+ + PDV+++DI L ++ GLE Sbjct: 33 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 92 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++E P + +TA D G + Y++KP SL + ++ + + Sbjct: 93 ILRRVRESDVY--TPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS 150 >gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10] gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar Microtus str. 91001] gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Antiqua] gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Nepal516] gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Pestoides F] gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola] gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis KIM 10] gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis biovar Microtus str. 91001] gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516] gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua] gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola] gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D106004] gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D182038] gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 239 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED +L D ++ +GY NG E + RQ P +I++D+ L G+ + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ +IP++ VTA + D + G + YI KP S + +K + Sbjct: 74 CREIR---RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128 >gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032] gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032] Length = 1183 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+DN + L+ + + + +G+EAL +A + D+++ D+ + + G Sbjct: 586 RILVVDDNPDLREHVARLLGPT-WDVVTATDGVEALRVATEVAFDLVLTDVMMPRLDGFG 644 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++ D + +P++ ++A A +E G + Y++KP S + ++ Sbjct: 645 LVAALRADPRTRYVPIVLLSARAGSAEEVAGLSVGADDYLTKPFSGQELIARVRA 699 >gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 267 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ + + G++ ++G A+E A +PD++++D+ L GL Sbjct: 41 RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 100 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 101 EVCRRVQAH---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 157 >gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + R + G+ +G AL A D++++D+ L GL+ Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGLD 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ +PV+ VTA D + G + Y+ KP L ++ I Sbjct: 62 VLRTLRARGHA--LPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118 >gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1370 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 68/117 (58%), Gaps = 2/117 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGLE 63 ++V+D+++N ++ + ++E G I +G +AL+ RQ VI+MD+Q+ + G E Sbjct: 1030 LVVDDSQINCEVAQRILEGEGAIVELAHDGEQALQRLRQEPSRFQVILMDVQMPNMDGYE 1089 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T+Q++ D L +PVIA+TA A + +E G +I+KP + + I++++ Sbjct: 1090 ATRQLRADPRLAALPVIALTAGAYRQQQELALSSGMNGFIAKPFQVENLIAIIRQFL 1146 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA---RQHKPDVIIMDIQLQEIS 60 +V+I +D+EL + ++ G+ NG +AL A DV+++D ++ ++ Sbjct: 881 RVLIADDHELARRNLTTIVSGFGWQVEAVANGTDALAAAATPEHEDFDVLLLDWRMPDLD 940 Query: 61 GLEITKQIKEDSELQEIPVI-AVTAFAMKGDEER---IRKGGCEAYISKPISLSIFMETI 116 G + +I+ + P+I V+A+ + EER +A ++KP++ TI Sbjct: 941 GFSVAHRIRAQTTSDRQPIIVMVSAYERRLLEERNQGAIDVDVDALMTKPVTAPTLYRTI 1000 Query: 117 KKYIGE 122 + Sbjct: 1001 ATLLAR 1006 >gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++V+D + ++ + E G+ ++ +G++A+E +++ DVI+MDI + + G Sbjct: 1 MFRILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIMMPRLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 K+IK+ +++IPV+ ++A + D+ + G + Y++KP S M + + Sbjct: 61 FSSYKEIKK---IKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVN 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium kansasii ATCC 12478] Length = 254 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D L + + G+ NG EA+ + PDV+++DI L ++ GL+ Sbjct: 30 RVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDVDGLQ 89 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I ++++E + P + +TA D G + Y++KP SL + ++ + + Sbjct: 90 ILQRVRESDDY--TPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRS 147 >gi|237737656|ref|ZP_04568137.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419536|gb|EEO34583.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] Length = 232 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 69/120 (57%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K ++I+ED+ ++ + +E GY+ ++G E LE A+ + D+I++D+ L EISG Sbjct: 1 MKNILIIEDDLRIRRILQLELEHEGYLVSLAKDGKEGLEKAKLIRYDLILLDLMLPEISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ K+++++S ++P+I +TA + + G + YI+KP ++ ++ + Sbjct: 61 EEVCKELRKNS---DVPIIVLTAKENIRSKVELLDMGADDYITKPFNIEELFARMRVALR 117 >gi|229189197|ref|ZP_04316221.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876] gi|228594241|gb|EEK52036.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876] Length = 896 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E L++ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLSEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|298530005|ref|ZP_07017407.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] gi|298509379|gb|EFI33283.1| response regulator receiver modulated diguanylate cyclase [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISG 61 + V+IV+D N+ LI+ Y + +G ALE+A + PD+I++D+ + E+ G Sbjct: 10 RSVLIVDDQPDNIHALGKLIKDE-YRIMAATSGARALEIAESDNPPDLILLDVMMPEMDG 68 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K + + IPVI VTA DEE G YISKP +I IK + Sbjct: 69 YEVCRRLKRNEKTNSIPVIFVTAMDSAEDEETGFNLGAVDYISKPFKPTIVRARIKNQM 127 >gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ +D+ + + R +E G+ AL R+G EAL L +H+PD++ +DI + ++ G E Sbjct: 2 TILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQVDGYE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ ++PV+ ++A + + D + G + +I KP + I+ + Sbjct: 62 VCRRVRAAD--AQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRR 118 >gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 887 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ EDN +N K+ L++ GY A +NG++ LE RQ DVI+MD+Q+ E+ GL Sbjct: 763 RILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALRQQSYDVILMDVQMPEMDGLT 822 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T+QI+ S L + +IA+TA A++GD E + G + Y+SKPI L +E ++K Sbjct: 823 ATQQIRR-SGLPQPRIIAMTANAVQGDREACLEAGMDDYVSKPIRLPDLVEALQK 876 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D + L R+ +E+ GY + NG + L+ +Q +PD++++D + + G Sbjct: 13 ILVVDDAKTVRALLREHLESVGYQLAEAVNGEDCLKSFQQLRPDIVLLDAVMPGMDGFNC 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++ + + P++ +T ER G YI+KPI ++ + + I Sbjct: 73 CARLRRLPQGMDTPILMITGLDDPSSVERAFAAGATDYITKPIHWAVLRMRVSRLI 128 Score = 90.2 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K+++IV+DN K+ + G + G EAL +Q D+ I+D +L ++ G Sbjct: 620 KRLLIVDDNPTYRKILSLYSQFWGTLPYTFAAGSEALRRLQQQPGFDLAIIDDRLADMDG 679 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 L + +QI++ + +P+I +T + + + G ++KP+ S + + K + Sbjct: 680 LSLVEQIRQLPQTATLPLIFLTNTSQRERVASHLQNGL--ILTKPLRQSQLQDALLKLL 736 >gi|167761581|ref|ZP_02433708.1| hypothetical protein CLOSCI_03992 [Clostridium scindens ATCC 35704] gi|167660724|gb|EDS04854.1| hypothetical protein CLOSCI_03992 [Clostridium scindens ATCC 35704] Length = 226 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++ +D + L +D E Y ++ NGME LE Q+ PD+I++D+ + + G Sbjct: 5 KKMLAADDEPGIIHLLKDYFEMQDYQVIEAENGMEVLEKISQN-PDIILLDVNMPGLDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++I+ P++ +TA + D + G + YI KP S+ ++ ++ Sbjct: 64 EVCERIRAHV---SCPILFLTAKIEEADRIKGLMLGGDDYILKPFSIEELGARVEAHLRR 120 >gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2] gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2] Length = 236 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + +E +GY + + + ++++D+ L GL Sbjct: 7 KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLPGEDGLS 66 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++E + +P+I +TA + G + Y+ KP + I+ + Sbjct: 67 ICRRLREAENI--MPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRR 123 >gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + R + +G++ NG++ LA D+I+MDI L ++ G Sbjct: 2 KLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGWR 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++E PV+ +TA D + + G + Y+ KP + S + ++ + Sbjct: 62 LLGSLREAGNA--TPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRR 118 >gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614] gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614] Length = 297 Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 + M+VED + +E +GY +G+ A++LAR+ PDV+I+D+ L I G+E Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + V+ +TA + + D G + Y++KP S + ++ + Sbjct: 125 VCRRLR---TFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRR 180 >gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium mesG1.Ag.4.2] Length = 935 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 79/119 (66%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 ++++ EDNE N L ++++E +GY NG +A+E+ R ++ ++I+MD+Q+ + G Sbjct: 695 RILLTEDNEANQLLIKEVLEKAGYSVDVAGNGKQAIEMVRNFNQYNLILMDMQMPIMDGY 754 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E TK +++ E +IP++A+TA M+GDEE+ + GC+ ++ KP+ S +E ++ ++G Sbjct: 755 EATKALRQ--EGYKIPIVALTAHTMQGDEEKTIEAGCDGFLGKPVRQSDLLEIVRYHLG 811 >gi|229154672|ref|ZP_04282787.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342] gi|228628620|gb|EEK85332.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342] Length = 883 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E L++ + + D+I+MDI + + G Sbjct: 763 KTILIVDDDHRNIFALQNALKKHHANIITAQNGLECLDILKNNTNIDLILMDIMMPNMDG 822 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 823 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881 >gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 237 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I++D+ L + ++ G+ +G + ++ ++ PD+II+D+ L + + Sbjct: 1 MKKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDEN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL+I K+++ + +IP+I +TA + D + G + Y+ KP + + I Sbjct: 61 GLDICKRLRVNKI--KIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|197103549|ref|YP_002128926.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196476969|gb|ACG76497.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 238 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+ +V+D+E + +E+ G+ +G L PD+ I+D+++ + G Sbjct: 1 MAKITLVDDDENIVTSVSLALESHGHAVKAYYDGASGLAALENDPPDLAILDVKMPRMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++ ++PVI +T+ + DE G + YI KP S + +E +K + Sbjct: 61 MEVLRRLR---RTSDVPVIILTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKAVLR 117 Query: 122 EA 123 A Sbjct: 118 RA 119 >gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 240 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED I G+ A +G A++ A +PD++IMDI L + GL Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I + + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 73 EATKRIVAE---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 236 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 V+IVED+ ++ + GY Q NG + LE+ + + I+DI + + G Sbjct: 3 SYHVLIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNETIHLAIVDIMMPVMDG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +T +++E+ + PVI ++A + + D+ G + Y++KP + M + ++ Sbjct: 63 ITMTMKLRENFDF---PVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLR 119 Query: 122 E 122 Sbjct: 120 R 120 >gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++ED+ K R E++G+ + +G A++ + P +++D++L SG Sbjct: 1 MDRILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRLPGKSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I ++I+ S +P++ ++A + D+ + + G + Y++KP S + ++ + Sbjct: 61 QDICREIRGFS--PNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 223 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + +GY+ + +G E L D +++DI L ++ G+ Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + + +PV+ +TA D+ + G + Y++KP L + I+ + + Sbjct: 62 VLEAWRRNDRT--MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRS 119 >gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L D + + Y +G A++ R+ P+++++D+ L GLEI Sbjct: 2 ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 61 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ ++P++ VTA + D + G + YI KP S + IK + Sbjct: 62 CREVRA---FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 116 >gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium damselae subsp. damselae CIP 102761] Length = 239 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+D+ L + G+ NG + L + ++++D+ L GL Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARENFHLMVLDLMLPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + + +P++ +TA + D + G + Y+ KP + + I+ + Sbjct: 66 ICRRLRNANNM--LPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRR 122 >gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] Length = 242 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++VED I G+ A +G A++ A Q +PD++IMDI L + GL Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIMLPVMDGL 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E TK+I D + +PV+ +TA + D+ G + Y++KP S+ + K + Sbjct: 73 EATKRIVAD---RPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129 >gi|167949354|ref|ZP_02536428.1| Signal transduction histidine kinase-like protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 179 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++VEDN N + + ++E G NG EA+ Q D++ MD Q+ + G Sbjct: 50 ARVLVVEDNVTNQAVAQGMLEKFGVHIDLVANGQEAITALEQLPYDLVFMDCQMPVMDGY 109 Query: 63 EITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + T++I+ + IPVIA+TA AM+GD ++ + G + +I+KP+ ++++ Sbjct: 110 DATRRIRDPQSSVKDHNIPVIAMTANAMQGDRDKCIEAGMDDHIAKPVDPRKLRRALEQW 169 >gi|150007937|ref|YP_001302680.1| two-component hybrid sensor kinase/response regulator [Parabacteroides distasonis ATCC 8503] gi|255013375|ref|ZP_05285501.1| two-component hybrid sensor kinase/response regulator [Bacteroides sp. 2_1_7] gi|262381501|ref|ZP_06074639.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] gi|149936361|gb|ABR43058.1| two-component system sensor histidine kinase, with a response regulator receiver domain [Parabacteroides distasonis ATCC 8503] gi|262296678|gb|EEY84608.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_33B] Length = 374 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 64/114 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D N+ L + +++ GY L +G +AL +A + P++I++DI + E+ G E Sbjct: 9 KVLIVDDVPTNVMLVQAILKKEGYTLLTCDSGTKALRIANEKHPNLILLDIMMPEMDGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + +K + E +IPVI ++A + + + G Y++KP ++ + Sbjct: 69 VLQHLKSNPETTDIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122 >gi|77164200|ref|YP_342725.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|76882514|gb|ABA57195.1| two component transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] Length = 231 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ +D+ + + +E G+ G AL AR D+ ++D+ + +++G Sbjct: 1 MNRILLADDDIELCGMLKQYLEVEGFQVGMAHGGESALNQARTGGYDLAVLDVMMPQLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ +++++DS +PV+ +TA D + G + Y+ KP + + + I+ + Sbjct: 61 FDVLRELRKDSL---VPVLMLTARGEDVDSIIGLELGADDYLPKPCNPRVLVARIRAILR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842] gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 221 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDN +L R+ + + G E + L +++ D++++D+ L +I G Sbjct: 1 MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K ++ S ++P+I +T + E + + G + YI+KP ++F++ ++ + Sbjct: 61 YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332527956|ref|ZP_08403990.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112530|gb|EGJ12323.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 234 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 58/123 (47%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++++D+ + D + +G+ + E R D +++D+ L + Sbjct: 1 MTSRLLLIDDDSRLTTMVGDYLRRNGFEVDTAGSLAAGREQLRHRAYDALLLDLMLPDGD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++T++++ D+ + +P++ +TA D + G + Y+ KP + +K + Sbjct: 61 GLDLTRELRSDARTRRLPLLMLTARGEPMDRIVGLELGADDYLPKPFEPRELLARVKALL 120 Query: 121 GEA 123 A Sbjct: 121 RRA 123 >gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + ++ G+ ++G E L + R+ DV I+D+ L ++SG+E Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGME 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K ++ E + PV+ +TA + D+ K G + Y+ KP + + + + A Sbjct: 62 LIKALR--DEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRA 119 >gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 651 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 3/122 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N ++L+E G+ + G ALE R+ D I+MDIQ+ E+ GLE Sbjct: 372 ILLAEDNPINQLYVQELLEMDGHEVVVAHTGRRALEALRRKYFDAILMDIQMPEMDGLEA 431 Query: 65 TKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+ D IP++A+TA A+KGD E + G Y+SKP+S + + + +G Sbjct: 432 TRAIRTDQTGDFDPNIPIVALTAHALKGDRETFLRAGMNEYLSKPVSPAGLEAALMRAVG 491 Query: 122 EA 123 +A Sbjct: 492 DA 493 >gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1187 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 70/118 (59%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K++++VED+ +N +L RD++ G + +G EALEL +H D ++MD Q+ + G Sbjct: 863 KRILVVEDHRINQELVRDVLVNVGCVVQIANHGKEALELLVKHSFDAVLMDCQMPIMDGY 922 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ I++ +L E+P+IA+TA + DE++ G + KPI + + T+ K + Sbjct: 923 QATQNIRQKLKLIELPIIALTANTLAEDEKKALDAGMNCVLHKPIDIPLLKSTLAKLL 980 >gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V++VED+ L + + G Q +G +AL + DV+++D+ L + Sbjct: 1 MTVRVLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + +++ ++PVI +TA A D + G + Y++KP+ I+ + Sbjct: 61 GLSVCHELRVRG---DLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|254786056|ref|YP_003073485.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] gi|237685209|gb|ACR12473.1| signal transduction histidine-protein kinase BarA [Teredinibacter turnerae T7901] Length = 557 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IV+DN +N+++ L+ + +GM A+E + + D+++MDIQ+ E+ GL Sbjct: 437 KRLLIVDDNSINLEVADWLLSDLQFEVETCNSGMAAIERLDEKRFDLVLMDIQMPEMDGL 496 Query: 63 EITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I++ S + + P++A+TA A++ D E+ G + +KP+ E +KK + Sbjct: 497 TTTRHIRQHSVKNKHTPIVAMTAHALEEDREKSLASGMNDHATKPLDPDALAEKLKKILS 556 Query: 122 E 122 + Sbjct: 557 K 557 >gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum DSM 5476] Length = 1068 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 75/124 (60%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ---HKPDVIIMDIQLQEI 59 K +++VEDN+LN ++ +L+ +G ++G+EA+EL Q D+I+MDIQ+ + Sbjct: 942 KHLLLVEDNQLNREIAVELLRITGAEVECAKDGIEAVELFSQSPVEHYDLILMDIQMPRM 1001 Query: 60 SGLEITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 GLE T+QI++ + +P++A+TA A DE + + G A++SKP+ + I +K Sbjct: 1002 DGLEATRQIRKLDRPDAGSVPIVAMTANAFAEDEHKSKAAGMNAHLSKPLDIKILFAQMK 1061 Query: 118 KYIG 121 ++ Sbjct: 1062 VFLR 1065 Score = 91.7 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-----RQHKPDVIIMDIQLQE 58 KV+ V+D+ + L+ G NG A+ RQ D+ + +L + Sbjct: 803 KVLAVDDDPDTISYIHSLLHRMGVQVECAENGNLAVSQVRDAHSRQEDFDICFVSCRLPD 862 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G E T++I E + V+ +TA+ E+ + G ++KP+ S +TI Sbjct: 863 LDGFETTRRIHEIVPNETTAVL-ITAYDAAEIEKEAAQSGASGVLAKPLFASTITQTISS 921 Query: 119 Y 119 Sbjct: 922 L 922 >gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus NVH0597-99] gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus NVH0597-99] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] Length = 309 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + + +E SG+ L +G AL +A + PD+I++D + + G + Sbjct: 13 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++K ++ + ++PV+ +T R + G Y++KPI++ I+ ++ A Sbjct: 73 CTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 131 >gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] Length = 233 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I +DN+ + ++ + +G EALE KPD++I+D+ + +I G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K+I++ + +P+I +TA + D + G + YI KP S + IK Sbjct: 65 EVCKEIRK---ISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRR 121 >gi|296102332|ref|YP_003612478.1| OmpR family transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056791|gb|ADF61529.1| OmpR family transcriptional regulatory protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 246 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L D + SGY A NG E + + D++++D+ + GL Sbjct: 6 HILVVDDDRDIRELIVDYLVKSGYRASDAANGKEMRAVLDKQHVDLVVLDVMMPGDDGLT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + +++P++ +TA + D + G + Y+ KP + IK + Sbjct: 66 LCRGLRS-GKHKDLPILMLTARNEETDRILGLEMGADDYVVKPFVARELLARIKAILRR 123 >gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] Length = 243 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+ +VED+ L + ++ GY + +G ALE +H D +I+D+ L + GL Sbjct: 8 KKIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGL 67 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI ++I++ S +PVI ++A + + G + Y++KP S+ M +K Sbjct: 68 EICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRR 125 >gi|265752871|ref|ZP_06088440.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] gi|263236057|gb|EEZ21552.1| two-component system sensor histidine kinase/response regulator hybrid [Bacteroides sp. 3_1_33FAA] Length = 1357 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 +++EDNE L Y + NG E ++A PD+II DI + G Sbjct: 1108 LVIEDNEEIRHYVCSLFCKD-YAVYEAANGEEGGDVAMSKIPDLIISDIMMPVKDGFTCC 1166 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++E IP++ +TA A D + K G + Y+ KP + + ++ I Sbjct: 1167 RELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLI 1221 >gi|256751275|ref|ZP_05492155.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus CCSD1] gi|307266238|ref|ZP_07547780.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1] gi|320115595|ref|YP_004185754.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326390556|ref|ZP_08212112.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus JW 200] gi|256749830|gb|EEU62854.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus CCSD1] gi|306918768|gb|EFN49000.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter wiegelii Rt8.B1] gi|319928686|gb|ADV79371.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993381|gb|EGD51817.1| response regulator receiver modulated diguanylate cyclase [Thermoanaerobacter ethanolicus JW 200] Length = 310 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 71/117 (60%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++IV+DN+L K+ +D++E +GY L+ ++G EAL++ R PD++I+DI + ++G Sbjct: 4 RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIYRNKLPDMVILDIVMPGMNGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++ + ++++ E +P+I +T+ ++ + + G + Y+ KP + + + Sbjct: 64 DLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNL 120 >gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407] Length = 226 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 ML +V+IVED + + + Y NG +AL+ D+I++DI + I Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL + ++++ D+ P++ +TA D G + Y+ KP + + I+ + Sbjct: 61 GLRVLQRLRADNNA--TPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLM 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|255530419|ref|YP_003090791.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343403|gb|ACU02729.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 1334 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN + + LQ NG EAL++ ++ +II DI + + G+ + Sbjct: 1076 ILVVEDNTEIRTFIAGKLAKD-FEVLQAGNGQEALDILKEKSTHLIISDIMMPVLDGIAL 1134 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +KE+ E IP+I +TA + + G +AY+ KP S + + + Sbjct: 1135 CRAVKENLEYAHIPIILLTAKNTLQSKIEGLEVGADAYLEKPFSPDHLLTQVSNLL 1190 >gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 234 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+D ++L ++ G+ +G EAL +AR+ PD IMD+ + + G E Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMPGMDGFE 67 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +++ + + PV+ +TA G + Y++KP SL + ++ + Sbjct: 68 LLGKLRAEGL--DGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124 >gi|218245994|ref|YP_002371365.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|257059045|ref|YP_003136933.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] gi|218166472|gb|ACK65209.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8801] gi|256589211|gb|ACV00098.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 8802] Length = 308 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 66/116 (56%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D N++L ++++T GY G +ALE + KPD+I++D+ + EI+GLE+ Sbjct: 11 ILVVDDISKNVQLLIEILDTVGYATTFAIGGKQALERVKSVKPDLILLDLMMPEINGLEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K +K D IP++ +TA K + + G Y++KP + + +K ++ Sbjct: 71 CKILKSDEATANIPILFLTASNDKEHLIKAFEQGAVDYVTKPFKVPELLARVKTHV 126 >gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199] gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199] Length = 1311 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQEISG 61 +V++VEDNE+N ++ R+++E G NGM AL + R + P D I+MD+Q+ E+ G Sbjct: 965 RVLLVEDNEINQQIAREVLEDVGVTVAIADNGMIALSMLRGNGPLPDAILMDLQMPELDG 1024 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+ I+ D L IP+IA+TA + +R G +++KP+ + ++T++++ G Sbjct: 1025 YETTRWIRSDDRLAHIPIIAMTAHVTDDERKRCLAAGMVDHVAKPVDVRQLLDTLERWTG 1084 Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 7/120 (5%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYI-ALQTRNGMEAL-----ELARQHKPDVIIMDIQLQ 57 + +IVEDN + + D ++ + +G AL R D++++D ++ Sbjct: 814 RTLIVEDNAVARAVLADTLKGLRFTDVEAVGDGPAALGAFAEAQLRGQPFDLVLVDWKMP 873 Query: 58 EISGLEITKQIKEDSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G+ +++KE S +P ++ VTA + E R+ G + KP+++S+ +++I Sbjct: 874 GMDGIATARRLKELSTPGAVPSILMVTAHSRAEVVEHAREVGILKVLVKPVNVSMLVDSI 933 >gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED + + + G +G+ LE+A +H D+II+DI L ++G++ Sbjct: 2 KILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIMLSGMNGIQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ + +PV+ +TA + + G + Y+ KP + I+ + + Sbjct: 62 VCREIRKGNN--NVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRS 119 >gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01] gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01] Length = 1058 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++V+DN +N K+ + +G+ NG EA+E +Q++ +I+MD + + G E Sbjct: 775 KILVVDDNTVNQKIAGLHVTKAGFDFDVAVNGQEAVEQFQQNQYSLILMDCMMPVMDGFE 834 Query: 64 ITKQIKEDS----ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I++ IP+IA+TA + D ++ G + Y+ KP + E + K Sbjct: 835 ATQIIRQIEVKEKRAFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKARLLKEKLDKA 894 Query: 120 IG 121 IG Sbjct: 895 IG 896 Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGL 62 ++++VEDN +N K+ L+ +GY NG A+E+ ++ K DVI+MD + + G Sbjct: 938 RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQKDGKFDVILMDCMMPIMDGF 997 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E ++QI+ L + P+IA+TA + D +R G +AY+ KP+ + I++ Sbjct: 998 EASRQIRAYEASKGLAKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLYQIEQA 1057 Query: 120 I 120 + Sbjct: 1058 M 1058 >gi|78355417|ref|YP_386866.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217822|gb|ABB37171.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1070 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++ VED+ N LFR ++ +G+ + NG E L L + D+I MD+++ + G Sbjct: 784 RILCVEDSANNRLLFRMYLKNTGHEVDEAENGEEGLRLFMLNSYDIIFMDLEMPVMDGYM 843 Query: 64 ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T I+ + + +PV+A+TA A++ ++R G Y++KP + +++ Sbjct: 844 ATTAIRDYEQRHRMPAVPVVALTAHALEDFKQRCLAMGFTDYLTKPFRKQQLLAMLER 901 >gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822] Length = 2003 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 76/119 (63%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+IV+D N + +L++ G+ + ++G+EAL+ A + +PD+I+MD+ + + G Sbjct: 1794 QKVLIVDDKGTNRSVLENLLKPLGFNVKEAKDGLEALKCALEFEPDIILMDLVMPNLDGF 1853 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E T+Q++ +L+E+ VIA +A D+++ K GC +I KPI S +E ++K++G Sbjct: 1854 EATRQLRMLPQLKEVVVIATSASVFNFDQQQSLKVGCNDFIPKPIRESELLEKLRKHLG 1912 >gi|301059404|ref|ZP_07200326.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] gi|300446485|gb|EFK10328.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta proteobacterium NaphS2] Length = 389 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K K+M+VED+E ++ I GY +++ +G++A PD++++DI L + Sbjct: 15 MSKGKIMVVEDDEDLAEILTYNITMRGYRSVKAFDGIDACRAIEAEMPDLVLLDIMLPRL 74 Query: 60 SGLEITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G +I K I+ +E + E P+I +TA + ++ + + G + YI KP S+ M + Sbjct: 75 DGWQICKFIRNHNEGIIAETPIIMLTALGSQEEKLKGIEMGADDYIPKPFSVKEVMFKVD 134 Query: 118 KYIGE 122 + +G Sbjct: 135 RLLGR 139 >gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1287 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 27/147 (18%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VEDN N +L +L+ G +G+E + A Q D+I+MDIQ+ + G Sbjct: 900 RRVLVVEDNRSNRELAYELMTDLGINVEVACDGLEGFKRAVQEPFDLILMDIQMPGMDGY 959 Query: 63 EITKQIKE---------------------------DSELQEIPVIAVTAFAMKGDEERIR 95 E T++I+ + IP+IA+TA AM GD ++ Sbjct: 960 EATRRIRSMDHRTEKMGQTSEVAEGIHESFSSLVPEPLNPGIPIIAMTAHAMAGDRDKSL 1019 Query: 96 KGGCEAYISKPISLSIFMETIKKYIGE 122 G + +++KPI + + +++ E Sbjct: 1020 NAGMDDHLTKPIEPEVLKNMLLRWMPE 1046 >gi|294650744|ref|ZP_06728095.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] gi|292823390|gb|EFF82242.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 243 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ G ++ NG +A+E+ D+I++DI+L E++G E+ Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +I++ + PVI +TA D+ + G + ++ KP + + + ++ + Sbjct: 75 LNKIRQK---AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129 >gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++ ED+ + + GY + +G +ALE A D+I++D+ L E+ GLE+ Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + PV+ +TA + D G + Y++KP L+ + ++ + Sbjct: 64 ARRIRAEGHG--TPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119 >gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D L+ GY +G ++A + D++I+D L ++SGLE Sbjct: 2 RILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRMLSKMSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I ++++ + PV+ +TA D G + Y+ KP L + ++ + Sbjct: 62 ICQKVRSQAL--STPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRR 118 >gi|218529950|ref|YP_002420766.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218522253|gb|ACK82838.1| GAF sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1937 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 +V++V+D+ N+ +E G L NG +++ L + + D +++DI + + G Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDSIALLKSNPNIDAMLVDIMMPGMDGY 1854 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E + I+ ++ + +P+IAVTA AMKGD E+ + G Y+SKPI + + ++ + Sbjct: 1855 ETMRAIRAEASFRSLPLIAVTAKAMKGDREKCLEAGASDYVSKPIDMDQLLAVLRVQLAR 1914 Score = 110 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVED+ + + +L G+ L ++G AL LA + KP I +DI L ++ G + Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHRFKPHAITLDIGLPDMDGWAL 1589 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 +K D + IP+ ++ ++R + G ++ KP+ M +++ Sbjct: 1590 LDLLKNDPRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640 Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 45/103 (43%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED+E L+ ALE + D I+D+ L +I G Sbjct: 1650 RNLLLVEDDENQRASITALLSEEDVKIFGVGTASAALEALTGGRFDCAIIDLGLPDIGGS 1709 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISK 105 E+ +QI+ + +E+P+I T + EE+ + I K Sbjct: 1710 ELIEQIRASQDGEELPIIVYTGRELTAAEEQQLRHTASTIILK 1752 >gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 234 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 4/124 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP--DVIIMDIQLQE 58 M ++++I+ED E L + GY +GM L++ + + DV+++D + + Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ +++K+ ++PVI VTA GD+ G + Y++KP ++ M ++ Sbjct: 73 LDGLEVLRRMKKM--TNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRV 130 Query: 119 YIGE 122 + Sbjct: 131 IFRK 134 >gi|78356567|ref|YP_388016.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218972|gb|ABB38321.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 544 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N KL E G+ G+E L+ Q D+I+MDIQ+ ++ G+E Sbjct: 419 RILLAEDDIINRKLAVFFFEKMGHAVRAVGTGIEVLQALAQEPFDLILMDIQMPDMDGVE 478 Query: 64 ITKQIKEDSELQ---EIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I+ + +IP+IA+TA AMKGD+ER G + Y+SKP+ M+ I+ Sbjct: 479 ATRAIRSAQGGRIRSDIPIIAMTAHAMKGDKERFLTAGMDGYVSKPVDFPALMQRIEAL 537 Score = 115 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+ ++D + E GY L+ +G E +E A + +PDVI++D+++ I G+E Sbjct: 12 RVLAIDDESSVRQSLAIFFEDCGYEVLEASDGYEGIETALRERPDVILVDLRMPGIDGIE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPI-SLSIFMETIKKYIGE 122 + +++ SEL + P IAV+ + + G +ISKP+ + + ++ Sbjct: 72 VLRRL--SSELPDTPAIAVSGVGVLEQALEAMRSGAWDFISKPVEDFEVLRKAVESARER 129 Query: 123 A 123 A Sbjct: 130 A 130 >gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2] Length = 956 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 7/119 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEIS 60 +K++IVEDN++N + + + + L ++G+EALE ++ K D+I+MD Q+ ++ Sbjct: 825 RKILIVEDNDINQVIVKQHLSA--HKTLSAKSGIEALEALKKMKVTFDLILMDCQMPDMD 882 Query: 61 GLEITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 G E T++I+ P+IA+TA AMKGD+E G Y+SKP + +E + Sbjct: 883 GFEATRRIRRGEAGERYVNAPIIALTANAMKGDKEDCFNAGMNDYLSKPFDVQDLLEKV 941 >gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354] gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354] Length = 260 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|238026819|ref|YP_002911050.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] gi|237876013|gb|ACR28346.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1] Length = 1182 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ-HKPDVIIMDIQLQEISGLE 63 +++ ED+ N+ +IE G L RNG EAL++ + D+++MD+ + E+ GL Sbjct: 1063 ILLAEDDARNIFALSHVIEPLGAKLLIARNGREALDVLERGEAVDLVLMDVMMPEMDGLT 1122 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 T +I+ D +P+IA+TA AM D R + G + YISKPI + + + + + Sbjct: 1123 ATAEIRRDPRFAHLPIIALTAKAMAHDRVRCLQAGADDYISKPIDVDRLLSLCRVWFRQ 1181 Score = 96.7 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++ +ED+ + + RDL+ + + +G + L R +P +++DI L + SGL + Sbjct: 795 ILAIEDDPVFAAILRDLVHELDFDFVHASDGSSGIALVRDMQPTAVLLDIDLPDRSGLTV 854 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K D+ + IP+ V A E+ G Y KP + S I++ G Sbjct: 855 LEWLKNDTLTRHIPIHIV---AATDHTEKALHLGAVGYTLKPTARSTLEAAIRRLEGR 909 Score = 78.2 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + R L+E + AL+ Q D ++ D+ L + +G Sbjct: 915 KRVLVIEDDSAMRESIRVLLEGETTEIVAVATLASALDALAQGGFDCVVTDLALPDGTGY 974 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ D+ +PVI T + DEE + Sbjct: 975 DLLERLAADTARARLPVIVYTGRVLSADEEHRLR 1008 >gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM 14600] gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM 14600] Length = 237 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++ +D +L R ++ Y L+ +G+EAL+L ++ D+ ++D+ + ++ Sbjct: 1 MEYTILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHVDLCVLDVMMPKMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + K+I++ S +PV+ ++A D+ G + Y+SKP + + I I Sbjct: 61 GFCLLKEIRKKS---NMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASI 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|229591084|ref|YP_002873203.1| oxidative stress related two component system, transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229362950|emb|CAY49878.1| oxidative stress related two component system, transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 247 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + + + +L + DV+++D+ L + G E Sbjct: 11 RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFE 70 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + Q+ S PVI +TA D R G + Y++KP + I + Sbjct: 71 LCNQLHRRS---NTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRR 126 >gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Query: 1 MLKK--VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M + +++++D K R + + GY ++ G E L A KPD++++D+ L + Sbjct: 4 MSQTATILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSKPDLLVLDLGLPD 63 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + G ++ ++ +E +PV+ ++ A +G + G Y++KP + F+ ++ Sbjct: 64 MDGQQVLREFRE---WSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRA 120 Query: 119 YIGEA 123 + +A Sbjct: 121 LLRQA 125 >gi|229195307|ref|ZP_04322079.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293] gi|228588162|gb|EEK46208.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 221 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV+I+ED++ + +D +E Y T G ALE ++ PD+II+D+ L ISG Sbjct: 1 MNKVLIIEDDKEICFMIKDHLEKYNYQVFFTFTGANALERVKELTPDLIILDLMLPFISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + I++ +PVI V+A ++ ++ + + G + Y++KP L + I++ + Sbjct: 61 DELIRTIRK---FSNVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNLL 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme DSM 15981] gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme DSM 15981] Length = 233 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED++ L +E GY NG +A+ A +PD++++D+ L ++ G+++ Sbjct: 6 ILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGLPDMDGVQV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++ ++P+I ++A + D+ G + Y++KP S+ ++ + Sbjct: 66 IAKVR---TWSQMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLRR 120 >gi|114328635|ref|YP_745792.1| two-component response regulator chvI [Granulibacter bethesdensis CGDNIH1] gi|114316809|gb|ABI62869.1| two-component response regulator chvI [Granulibacter bethesdensis CGDNIH1] Length = 260 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + + +V+D+ + +E G+ +G AL+ D+ ++DI++ + Sbjct: 28 MTQTIALVDDDRNILTSVSMTLEAEGFQVRTYTDGESALQGLTTRPVDLAVLDIKMPRMD 87 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++++ + L PVI +T+ + D+ + G + YI+KP S + +E I+ + Sbjct: 88 GMELLQRLRARTAL---PVIFLTSKDEEVDQLMGLRLGADDYITKPFSQRLLIERIRALL 144 Query: 121 GE 122 Sbjct: 145 RR 146 >gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440] gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440] Length = 220 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + D + GY R+G+ L + D++I+D+ L + GLE Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + +PV+ +TA D G + Y+ KP L+ ++ + + Sbjct: 62 LLRRLRAGGD--SLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRS 119 >gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536] gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str. 8401] gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972] gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605] gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli CFT073] gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli 536] gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972] gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator, winged helix family precursor [Shigella flexneri 2002017] gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972] gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1 str. NRG 857C] gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3] gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1] gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3] gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263] gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2] gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1] gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605] Length = 260 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 245 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++V++VED+ ++ + G++ +G A++ A +PD++++D+ L GL Sbjct: 19 RRVLVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVMLPGFDGL 78 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++++ + +PV+ +TA + D G + Y++KP S+ + + Sbjct: 79 EVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135 >gi|328861215|gb|EGG10319.1| hypothetical protein MELLADRAFT_115560 [Melampsora larici-populina 98AG31] Length = 1004 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 72/124 (58%), Gaps = 5/124 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+DN +N++L R ++E GY NG+EA++ A D+++MD Q+ + G Sbjct: 881 KKILLVDDNGMNVELGRRVLEKIGYEVQVAYNGLEAVQKACHSDCDLVLMDCQMPGVDGP 940 Query: 63 EITKQIK-----EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 E T+ I+ + +P+IA+TA + D+ + G + ++ KP+ +++ T+ Sbjct: 941 EATRMIRDYETKAKEGVNRLPIIALTANVSESDQTTCMESGMDGFLPKPLQVTVLKATLH 1000 Query: 118 KYIG 121 +++G Sbjct: 1001 RFLG 1004 >gi|327404314|ref|YP_004345152.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319822|gb|AEA44314.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 230 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 5/124 (4%) Query: 2 LK---KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 +K K+++VED+ + D +++ GY + NGME + + + I D+ + + Sbjct: 1 MKSKAKILLVEDDTNLGFVISDQLKSEGYQVVLCSNGMEGHMRFSEDEFHLCIFDVMMPK 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + K+I+ + QE+P+I +TA AM D+ G + Y++KP S +K Sbjct: 61 KDGFTLAKEIRTMN--QEVPIIFLTAKAMTEDKVAGFNAGGDDYLTKPFSFDELSVRVKA 118 Query: 119 YIGE 122 + Sbjct: 119 LLKR 122 >gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++IVED + + ++ GY NG E LE A + D+I++D+ L E+ Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++ + + ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 754 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N+ + + L+ G+ A +G AL + D++ MD Q+ + G Sbjct: 483 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALASMESTRYDMVFMDCQMPVLDGYA 542 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++ + +S + IP++A+TA AM GD ER G + Y+SKP++ +++++ Sbjct: 543 ATRRWRAMETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 602 Query: 121 GE 122 Sbjct: 603 PR 604 >gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella multiformis DSM 16608] gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator hybrid [Prevotella multiformis DSM 16608] Length = 878 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++++DN R + Y + +G LE+AR+ PD+II DI + + GLE Sbjct: 635 VLVIDDNGDIRTYLRSALSPI-YKVSEAVDGKNGLEMARRIVPDLIISDIMMPVMDGLEF 693 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 Q+K+D + IPVI +TA ++ + G +AYI+KP SL + + I I Sbjct: 694 CSQLKQDKAISHIPVILLTARSLDDQRVEGYEHGADAYIAKPFSLRLLLSRIDNLI 749 >gi|331213871|ref|XP_003319617.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309298607|gb|EFP75198.1| protein-histidine kinase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1640 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 72/125 (57%), Gaps = 5/125 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N K+ L++ G+ NG A+E A ++ D+++MD+ + + GLE Sbjct: 1476 KILLAEDNHVNQKVATKLLDMGGHKVEVVDNGELAVEAATKNTYDLVLMDVSMPTMGGLE 1535 Query: 64 ITKQIK---EDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK-- 118 T I+ +D+ L+ +P+IA+TA AM GD ER G + Y++KP+ + ++ + Sbjct: 1536 ATSLIRKHEQDNHLERVPIIALTAHAMLGDRERCIDAGMDDYVTKPLRKADLDASMSRCV 1595 Query: 119 YIGEA 123 I A Sbjct: 1596 AIARA 1600 >gi|189466516|ref|ZP_03015301.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM 17393] gi|189434780|gb|EDV03765.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM 17393] Length = 229 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E ++ + +E GY + EAL++ ++++D+ + EISG + Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTAHSAEEALKM-DIGSYSLLLLDVMMGEISGFK 63 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + +K+D + ++P+I +TA + D G + YISKP SL + +K + Sbjct: 64 MASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122 >gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D++ ++ + GY L+ +G EALE+ + + ++++D+ + ++ G Sbjct: 1 MYNILVCDDDKEIVEAIEIYLTQEGYRILKAYDGTEALEMLEREEVHLLLLDVMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T +I+E + IP+I ++A + D+ G + Y++KP S + +K + Sbjct: 61 IRATLKIREKN---SIPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|134095909|ref|YP_001100984.1| twitching motility protein. pilH ortholog [Herminiimonas arsenicoxydans] gi|133739812|emb|CAL62863.1| Twitching motility two-component response regulator transcription regulator protein PilH [Herminiimonas arsenicoxydans] Length = 121 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 58/117 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K++IV+D+ D++ G+ NG EAL + KP +I+MDI + +G Sbjct: 4 QKILIVDDSPTERYFLTDILVKKGFSVSTAENGEEALLKIKADKPQLILMDIVMPGQNGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 +IT+ I D E Q++P+I T+ + D + G YI KP+ + + I Sbjct: 64 QITRAITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPAELLSKIAAL 120 >gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614] gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614] Length = 847 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED E+N + ++E GY NG+ AL + + D ++MD+Q+ + G + Sbjct: 727 RILVVEDGEINQLVAVGILEHLGYTTDVADNGVTALSAMGRTRYDAVLMDVQMPGMDGYQ 786 Query: 64 ITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T++I+ + ++ P+IA+TA A D +R G + YISKP++ + ++ Sbjct: 787 ATREIRRLEGDVHHTPIIAMTASATNDDRDRCLAAGMDDYISKPVNPHTLETVLSRW 843 Score = 94.0 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR-----QHKPDVIIMDIQLQE 58 +V++V+DN+ N + D + G +G AL H D+ ++D+ + + Sbjct: 587 RVLVVDDNQTNRMILHDQLTAWGLHVDLAEDGPHALAALADAHRTHHPFDLAVLDLCMPD 646 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + GLE+ +I D L + + +T+ + + R G A ++KP+ LS T++ Sbjct: 647 MDGLELAHRISSDPTLTGLAMALLTS-GGEISQTDARAVGITASMTKPVQLSRLRATLQD 705 Query: 119 YIG 121 IG Sbjct: 706 IIG 708 >gi|330966402|gb|EGH66662.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 254 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D+ + + + +L RQ DV+++D+ L + G E Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ IPVI +TA D R G + Y++KP + I + Sbjct: 72 LCSRLHRRE---NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRR 127 >gi|262273464|ref|ZP_06051278.1| copper-sensing two-component system response regulator CpxR [Grimontia hollisae CIP 101886] gi|262222442|gb|EEY73753.1| copper-sensing two-component system response regulator CpxR [Grimontia hollisae CIP 101886] Length = 240 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++++D+ L DL+E GY NG E L+ D++++D+ + ++G Sbjct: 10 MANILLIDDDTELTSLLHDLLELEGYQVEIANNGQEGLDKISDQT-DLVLLDVMMPVLNG 68 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E +++++ E PV+ +TA + D + G + Y+ KP S + ++ + Sbjct: 69 METLRRLRDSWET---PVLMLTAKGEEIDRVMGLELGADDYLPKPFSDRELLARMRAILR 125 Query: 122 E 122 Sbjct: 126 R 126 >gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|212692483|ref|ZP_03300611.1| hypothetical protein BACDOR_01979 [Bacteroides dorei DSM 17855] gi|212664958|gb|EEB25530.1| hypothetical protein BACDOR_01979 [Bacteroides dorei DSM 17855] Length = 1306 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++DN + + +++ Y +G +A + H+ D+II D+ L +I+G E Sbjct: 1056 TLLLIDDNAELLYIMKEIF-KEKYSVWTAADGQQAWDKLSNHEVDMIICDVMLPDINGWE 1114 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + +IK D IPV+ +TA D G + YI+KP + + + I Sbjct: 1115 LCTRIKSDLRFNHIPVVILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIR 1172 >gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1] Length = 1522 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISG 61 +++IVEDN N ++ R+L+E G + +G EA+E+ H D+++MD+Q+ + G Sbjct: 1173 RLLIVEDNLNNQQIARELLEDEGAVVSIANHGKEAIEILEHHPSSFDLVLMDLQMPVMDG 1232 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 TK I++ L+ +P+IA+TA AM D + G +I KP L+ + + KY G Sbjct: 1233 FNATKYIRKSIGLKNLPIIAMTANAMVSDRDACLAAGMNEHIGKPFDLNNLIHIVLKYSG 1292 Query: 122 EA 123 +A Sbjct: 1293 QA 1294 Score = 99.0 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 8/127 (6%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-----PDVIIMDIQLQE 58 +V++V+DN L + + E+ + +G +AL+L RQ + +D Q+ Sbjct: 1025 RVLVVDDNPTACNLIKQMGESLKWSVDVATSGSDALQLMRQQHERGMTYGALFIDWQMPG 1084 Query: 59 ISGLEITKQIKEDSELQEIPVI-AVTAFAMKGDEERIRKGGC--EAYISKPISLSIFMET 115 + G + +K ++E + P+I +TA + +R + + Y+ KPI+ S+ +++ Sbjct: 1085 LDGWQTSKCVREMMPVDNGPIIVMITAHDREMLLQRSEEDQALLDGYLVKPITASMLLDS 1144 Query: 116 IKKYIGE 122 + + E Sbjct: 1145 VNDALSE 1151 >gi|152982489|ref|YP_001354645.1| twitching motility two-component response regulator transcription regulator protein [Janthinobacterium sp. Marseille] gi|151282566|gb|ABR90976.1| twitching motility two-component response regulator transcription regulator protein [Janthinobacterium sp. Marseille] Length = 121 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 58/117 (49%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +K+++V+D+ D++ G+ NG EAL + KP +I+MDI + +G Sbjct: 4 QKILVVDDSPTERYFLTDILIKRGFSVSTAENGEEALLKIKADKPQLILMDIVMPGQNGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 ++T+ I D E Q++P+I T+ + D + G YI KP+ + + I Sbjct: 64 QVTRSITRDPETQDVPIIICTSKGQETDRIWGLRQGARDYIVKPVDPAELLSKIAAL 120 >gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633] gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus Peru-466] gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus AN-5034] gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus AQ4037] Length = 1051 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+DN +N K+ + +G+ NG EA++L R + +I+MD + + G E Sbjct: 769 KVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDLFRTSQYCLILMDCMMPVMDGFE 828 Query: 64 ITKQIKE----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TKQI++ ++ IP+IA+TA + D ++ G + Y+ KP + E + K Sbjct: 829 ATKQIRQIEQKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKADLLKEKLDKA 888 Query: 120 IG 121 +G Sbjct: 889 VG 890 Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N K+ L+ +GY NG A+E+ R D+I+MD + + G Sbjct: 931 RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQRDGGFDIILMDCMMPVMDGF 990 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TKQI+ L++ P+IA+TA + D +R G +AY+ KP+ + I+ Sbjct: 991 EATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLHQIENV 1050 Query: 120 I 120 + Sbjct: 1051 M 1051 >gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1006 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 71/126 (56%), Gaps = 6/126 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56 + ++IVED+ N+ ++E G + RNG+EA+ + ++ D+++MD+ + Sbjct: 876 RHILIVEDDVRNVFALTSILEPCGVVLQVARNGLEAVAAIDKSIAEPNNRVDLVLMDVMM 935 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 E+ G+ T++I++ + Q +P+I +TA AMK D++ G Y++KP+ + + I Sbjct: 936 PEMDGISATQEIRKRPQCQRLPIIMLTAKAMKDDQQSCLAAGANDYLAKPLDVEKLLSLI 995 Query: 117 KKYIGE 122 + ++ Sbjct: 996 RVWMPR 1001 Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ ++ +L + + + EA A +++P +I+D+ L + SGL + Sbjct: 610 ILVVEDDPNFAQILYNLAHDTRFQCVVANTAEEAYAAALEYQPSAVILDVGLPDHSGLSV 669 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++K D+ ++ IPV ++ G ++ KP+ +E ++ Sbjct: 670 LDRLKNDARVRHIPVHVISGNDYNDS---ALSLGAIGFMLKPVKREEIIEVLQ 719 Score = 79.8 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 47/95 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++V++VED+ + + L+ + + ++ E LE R D +++D+ L + SG Sbjct: 729 MRRVLVVEDDPVQLDSMHALLRSRDVETIGVQSAAECLEKLRSETFDCMVLDLTLPDASG 788 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 + + + ++ PVI T + ++E+ + Sbjct: 789 YSLLETLSQEESYSFPPVIVYTGRDLSIEQEQRLR 823 >gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + L++ Y NG EAL+ + DVII+D+ + ++ G Sbjct: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K ++ ++ ++ ++ +TA D G + Y+ KP M I+ + Sbjct: 62 FLKLLR--NKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRR 118 >gi|94985622|ref|YP_604986.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555903|gb|ABF45817.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 227 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++IVED ++ GY + +G+ AL R +PD+I++D+ L S Sbjct: 1 MSALILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLPGRS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL++ K ++ D PVI VTA A + D+ + G + Y+ KP M +K + Sbjct: 61 GLDVLKTVRADGPT---PVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVL 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|298376717|ref|ZP_06986672.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|301310020|ref|ZP_07215959.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] gi|298266595|gb|EFI08253.1| two-component system sensor histidine kinase [Bacteroides sp. 3_1_19] gi|300831594|gb|EFK62225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3] Length = 374 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 64/114 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+IV+D N+ L + +++ GY L +G +AL +A + P++I++DI + E+ G E Sbjct: 9 KVLIVDDVPTNVMLVQAILKKEGYTLLTCDSGTKALRIANEKHPNLILLDIMMPEMDGYE 68 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 + + +K + E +IPVI ++A + + + G Y++KP ++ + Sbjct: 69 VLQHLKSNPETTDIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVA 122 >gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ + +E Y+ +G +AL A D++I+D+ L + G E Sbjct: 2 RILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPYDLLILDVMLPSLDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ S + +P++ +TA D R G + Y+ KP ++ + Sbjct: 62 VCRRLR--SAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRR 118 >gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + +GY+ + +G E L D +++DI L ++ G+ Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + +S + +PV+ +TA D+ + G + Y++KP L + I+ + + Sbjct: 62 VLEAWRRNS--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119 >gi|262382721|ref|ZP_06075858.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] gi|262295599|gb|EEY83530.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_33B] Length = 1314 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D++ + L + + + Y + N EALE +Q+ P +II DI + I GLE+ Sbjct: 1065 ILVIDDHKDIVWLITETLSSE-YQVQEAYNAEEALEFLKQYTPSLIITDIMMPNIDGLEL 1123 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 IKE+ + IP+I ++A ++ G +AY++KP S ++ + + + + Sbjct: 1124 ISLIKENKYTRHIPLIIISAKISDQEQAAGLNIGADAYLTKPFSPTVLLSVVNRLM 1179 >gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces scabiei 87.22] gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22] Length = 247 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED L + +GY T G AL + +P ++++D+ L ++ G E Sbjct: 13 RLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPDLDGFE 72 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +T++++ + E P++ +TA D + G + Y+SKP S+ + I+ + Sbjct: 73 VTRRLRAAGD--ECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRR 129 >gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] Length = 238 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++I++D E KL +E GYI + NG + LE + +++D+QL ++ Sbjct: 1 MSERILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G I ++++ + PVI ++A A + + G + Y+ KP S M I + Sbjct: 61 GKSILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAIL 117 Query: 121 GE 122 Sbjct: 118 QR 119 >gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I+ED E ++ GYI +G + LE A ++ D+I++D+ L ++G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P+I +TA D G + Y+ KP ++ + ++ Sbjct: 61 LEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] Length = 237 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++++D + + GY Q G E L+LA D++I+DI L ++ G Sbjct: 13 ARVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGH 72 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ +Q+++ ++PVI +T A + ++ R G Y++KP M ++ + Sbjct: 73 EVLEQLRQ---WSQVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLR 128 >gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1104 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N K+ +++ G+ NG+EA+ D+++MD Q+ E+ G E Sbjct: 850 RLLLVEDNLVNRKVALSILDNLGFRTDAVSNGLEAISALENLPYDLVLMDCQMPELDGYE 909 Query: 64 ITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK+I+ + IP+IA+TA AM GD E+ G + YISKP+ + + ++K++ Sbjct: 910 ATKRIRSAESRVLNRGIPIIAMTAHAMAGDREKCIACGMDDYISKPVEPAALNQLVEKWL 969 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQ------HKPDVIIMDIQL 56 +K++IV+DN N +L L+ET G + + AL ++ +II D+Q+ Sbjct: 698 RKILIVDDNATNRRLLSVLLETWGCRHEEAPDAQNALLKIKKAALEEKEPYSLIITDMQM 757 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + G E+ + IK D +L ++ +T+ A +GD R+ + G AY++KPI S+ + + Sbjct: 758 PLMDGEELGRLIKNDPDLAGSSLLMMTSIANRGDAARLSEIGFSAYLTKPIKQSVLFDCL 817 Query: 117 KKYIG 121 + +G Sbjct: 818 QTVLG 822 >gi|78484350|ref|YP_390275.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78362636|gb|ABB40601.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 223 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VED L ++ + + YI +G EAL L + + D+II+D+ L + SG Sbjct: 1 MSKILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ +QI+ D PV+ +TA + K G + Y+ KP + I+ + Sbjct: 61 LQVLEQIRADQNT--TPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLK 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|84503161|ref|ZP_01001246.1| DNA-binding response regulator [Oceanicola batsensis HTCC2597] gi|84686727|ref|ZP_01014614.1| DNA-binding response regulator [Maritimibacter alkaliphilus HTCC2654] gi|114762576|ref|ZP_01442020.1| DNA-binding response regulator [Pelagibaca bermudensis HTCC2601] gi|159046311|ref|YP_001541983.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|159046586|ref|YP_001542256.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|84388402|gb|EAQ01351.1| DNA-binding response regulator [Oceanicola batsensis HTCC2597] gi|84665158|gb|EAQ11637.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2654] gi|114544831|gb|EAU47836.1| DNA-binding response regulator [Roseovarius sp. HTCC2601] gi|157914070|gb|ABV95502.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157914345|gb|ABV95775.1| two component transcriptional regulator, winged helix family [Dinoroseobacter shibae DFL 12] Length = 240 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ + +E +G R+ +E D++++D+ + GL Sbjct: 6 HILIVDDHAQIRESVARFLEKNGMRTTVARDAVEMDAKLATGHFDLLVLDVMMPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + +++ + ++P+I +TA + D + G + Y++KP + + IK + + Sbjct: 66 VCRRL---APEGDLPIIMLTALGEETDRIVGLEIGADDYLAKPFNPRELLARIKSVLRRS 122 >gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 223 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + L++ Y NG EAL+ + DVII+D+ + ++ G Sbjct: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K ++ ++ ++ ++ +TA D G + Y+ KP M I+ + Sbjct: 62 FLKLLR--NKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRR 118 >gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I GL Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLH 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D G + Y+ KP + + I+ + Sbjct: 62 VLQRLRADNHT--TPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|26991668|ref|NP_747093.1| response regulator receiver protein [Pseudomonas putida KT2440] gi|148550067|ref|YP_001270169.1| response regulator receiver protein [Pseudomonas putida F1] gi|24986766|gb|AAN70557.1|AE016698_5 type IV pili response regulator PilH [Pseudomonas putida KT2440] gi|148514125|gb|ABQ80985.1| response regulator receiver protein [Pseudomonas putida F1] Length = 121 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 67/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V+IV+D+ M + +E GY L+ NG + + LARQ KPD ++MDI + ++G Sbjct: 1 MARVLIVDDSPTEMYRLTEWLEKHGYQVLKASNGADGVALARQDKPDAVLMDIVMPGMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + T+Q+ +D + IPVI VT + D + G +++KP+ + +K+ +G Sbjct: 61 FQATRQLSKDPDTSAIPVIVVTTKDQETDRIWATRQGARDFLTKPVEEEALIAKLKEVLG 120 >gi|325293769|ref|YP_004279633.1| two-component response regulator protein [Agrobacterium sp. H13-3] gi|325061622|gb|ADY65313.1| putative two-component response regulator protein [Agrobacterium sp. H13-3] Length = 309 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + D +E SG+ AL +G AL +A + PD+I++D + + G E Sbjct: 13 VLLVDDSPEALGFLTDALEQSGFSALIATSGQAALNIAERITPDIILLDAVMPAMDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K ++ + ++PVI +T R + G Y++KPI++ I+ ++ A Sbjct: 73 CRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131 >gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family [Halomonas elongata DSM 2581] Length = 254 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK----PDVIIMDIQL 56 M +++ VEDN ++ + + G+ + +G AL D++++D+ L Sbjct: 12 MTYRILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLML 71 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + GLE+ ++++ PV+ VTA A D + G + Y++KP +SI + + Sbjct: 72 PGLDGLEVCRRLRRQD--SRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARV 129 Query: 117 KKYIGE 122 + + Sbjct: 130 QALLRR 135 >gi|302340322|ref|YP_003805528.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] gi|301637507|gb|ADK82934.1| response regulator receiver protein [Spirochaeta smaragdinae DSM 11293] Length = 374 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N+ + ++ GY +G+EA+EL + + D+I++DI++ I+G+E Sbjct: 9 ILIVDDTRNNLFILSSILRKKGYRIAAALSGLEAIELLQHKQFDLILLDIRMPGINGIET 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 K+IK E EIPV+ ++A G YI KP + I+ + Sbjct: 69 CKRIKATPETAEIPVLFISAIDDHDLIAEAFAAGGRDYILKPFEPVELIARIETQL 124 >gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 250 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + +++VED I G+ A +G A+ A Q KPD+IIMD+ L + G+ Sbjct: 12 RTILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAEQLKPDLIIMDVMLPIMDGI 71 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E T++I +P++ +TA + D+ G + Y++KP S + + Sbjct: 72 EATRRI---ISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRR 128 >gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D+ ++ + GY Q NG E L++ + +I++D+ + ++ G + Sbjct: 8 ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMDGYTM 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++E S IPVI +TA + D+ + GC+ YI KP + + + Sbjct: 68 LCKLRESS---NIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKR 122 >gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803] gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803] Length = 234 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGY-IALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D ++L ++E G+ + AL L QH D+I++D+ L SG + Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVMLPGQSGFD 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I I++ + + P+ ++A A D+ G + YI+KP + + IK + Sbjct: 66 ICPIIRQQT---DCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRR 121 >gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08] gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07] gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08] gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 68/121 (56%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D++ + +++ G+ + +GM+ALE+ ++ +I+MDI + ++ G Sbjct: 1 MYNILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ T +I+E+ + IP+I ++A + D+ G + YI+KP +L + +K + Sbjct: 61 IKATVKIREE---RNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|210609626|ref|ZP_03288077.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787] gi|210152816|gb|EEA83822.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787] Length = 233 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED+ L +ET Y NG++AL + KPD++++D+ L ++ G+EI Sbjct: 6 ILVVEDDTAIRNLITTTLETQDYRFHTAPNGVQALLESVSQKPDIMLLDLGLPDMDGIEI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+++ +P+I ++A + D+ G + Y++KP S+ + ++ + Sbjct: 66 IKKVRS---WSNLPIIVISARSEDRDKIDALDAGADDYLTKPFSVDELLARLRVTLRR 120 >gi|67925033|ref|ZP_00518415.1| Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67853127|gb|EAM48504.1| Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 204 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 64/116 (55%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D N++L ++ GY + +G +AL + + PD+I++DI++ E+ G E+ Sbjct: 11 ILIVDDIPENLQLLFTMLTKQGYEVRRVLSGKQALNVVKVEPPDLILLDIRMPELDGYEV 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D Q IPVI ++A D+ + G YISKP L + ++ + Sbjct: 71 CQRLKADETTQNIPVIFLSALNETFDKVTAFQVGGVDYISKPFQLQEVIIRVENQL 126 >gi|310821132|ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309394204|gb|ADO71663.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 972 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++ +DN R L++ + + ++G A + PD+++ D+ + + G Sbjct: 616 RVLVADDNSDMRGYIRSLLDPT-CVVETVQDGEAAYQAILDSPPDLVLSDVMMPRLDGFG 674 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++E+ + Q +P+I ++A A + + G Y+ KP S + I+ + A Sbjct: 675 LLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRLA 734 >gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH--KPDVIIMDIQLQEISG 61 +V++VED K + + YI +NG EA E + + I D L +SG Sbjct: 2 RVLLVEDEPDLGKAIKRTLNQEKYIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLPGLSG 61 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + +PV+ +TA D+ G + Y+ KP ++ + ++ Sbjct: 62 LELCQRLRAKNN--HLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|298387534|ref|ZP_06997086.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] gi|298259741|gb|EFI02613.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. 1_1_14] Length = 1346 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y NG EAL + ++KP+++I DI + E+ G Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK + E IPVI +TA + D + G + YI KP ++ I T+ + Sbjct: 1128 ELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLLIN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|270296880|ref|ZP_06203079.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317479144|ref|ZP_07938284.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|270272867|gb|EFA18730.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316904716|gb|EFV26530.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 239 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VED + + +D +E +I +G E L +PDV++ D+ + + G E Sbjct: 5 TVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFFDLRPDVLVADVMMPRMDGFE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I++ ++ PV+ +TA + D + G Y+ KP + + IK +G+A Sbjct: 65 MVRRIRQTD--KQTPVLFLTARSTINDVVEGFELGANDYLKKPFGMQELIIRIKALVGKA 122 >gi|253571881|ref|ZP_04849286.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251838478|gb|EES66564.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1346 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y NG EAL + ++KP+++I DI + E+ G Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK + E IPVI +TA + D + G + YI KP ++ I T+ + Sbjct: 1128 ELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLLIN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W] gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMENIRMNLGLSEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|114778037|ref|ZP_01452937.1| type IV pilus biogenesis protein PilB [Mariprofundus ferrooxydans PV-1] gi|114551643|gb|EAU54196.1| type IV pilus biogenesis protein PilB [Mariprofundus ferrooxydans PV-1] Length = 732 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 66/118 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + V++V+D+ L +++ GY LQ +G +A ++ ++ KP +++ D ++ ++G+ Sbjct: 602 QTVLVVDDSSSVRNLVEFVLDADGYKVLQAEDGQQAWDMLQRMKPSLVLTDCEMPNMTGM 661 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ KQ++E ++PVI +TA + DE + K G YI KP+ ++K + Sbjct: 662 ELLKQMREQDRFDDVPVILLTARRSEEDEVQGLKAGAADYIGKPVEPLKLQARVRKTL 719 >gi|70733111|ref|YP_262884.1| type IV pilus response regulator Pilh [Pseudomonas fluorescens Pf-5] gi|68347410|gb|AAY95016.1| type IV pilus response regulator Pilh [Pseudomonas fluorescens Pf-5] Length = 121 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 69/119 (57%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ M ++E G+ L+ NG + + LAR+ KPD ++MDI + ++G Sbjct: 1 MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALAREEKPDAVLMDIVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+Q+ +D+E IPVI +T + D+ + G + Y++KP+ ++T+ + Sbjct: 61 FQATRQLTKDAETSHIPVIIITTKDQETDKVWGTRQGAKDYLTKPVDEETLIKTLNNVL 119 >gi|30019942|ref|NP_831573.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|29895487|gb|AAP08774.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] Length = 247 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IV+D++ ++ + + G+ NG E+LE+ + + I+DI + ++ G+E+ Sbjct: 25 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 84 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+E +P++ ++A + D+ G + YI KP S F+ +K + Sbjct: 85 CRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 139 >gi|29347144|ref|NP_810647.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29339043|gb|AAO76841.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1346 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y NG EAL + ++KP+++I DI + E+ G Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIPEYKPELVISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK + E IPVI +TA + D + G + YI KP ++ I T+ + Sbjct: 1128 ELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLLIN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1299 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED +N K+ +++ GY NG+EALE ++ DV+ MDIQ+ E+ G E Sbjct: 1033 KILLVEDVLVNQKIAMNMLHLLGYRTDVANNGLEALEALQRQLYDVVFMDIQMPEMDGWE 1092 Query: 64 ITKQIKED-SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T +I+++ S + +IA+TA A D ++ G + YISKPISL +KK+ Sbjct: 1093 TTHKIRQEFSPTLQPWIIAMTAHARPEDRQQCLAAGMDDYISKPISLEDITTALKKF 1149 Score = 67.8 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K++++ N K +++ G + AL QH + ++D+ +I+G Sbjct: 876 KRLLLAVGNANLRKCLTRQLQSLGLDVQAVDSNATALHCLWQHTSLALAVLDVDSPQING 935 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS----LSIFMETIK 117 L ++ +I+ + Q +P++ ++A + E + A++ KP+ + ++ ++ Sbjct: 936 LHLSTKIRAIPQHQNLPLVMLSAKGKQTLEVKQVASEFTAFLHKPLRHYQLHNTLLQIVR 995 Query: 118 -KYIGEA 123 K++ ++ Sbjct: 996 GKWLSKS 1002 >gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED+ +L ++ ++ +GY ++G++ L+ A D+II+D+ L G Sbjct: 1 MKQILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLMLPGKDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 EI ++++E E IP+I V+A + D+ + G + Y++KP S + + IK ++ Sbjct: 61 YEIVREVREKYE---IPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHM 116 >gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 229 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED ++ + + GY NG EALE+A+ D+I++D+ L I GLE Sbjct: 2 KILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + E V+ ++A + D G + Y+ KP + ++ + Sbjct: 62 LLRTLRA--QHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRR 118 >gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551] gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 241 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +K++IVED K+ + +E Y +G LE A + D+I++D+ L +S Sbjct: 1 MKEKILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPSLS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ +++++ PVI +TA D+ G Y++KP + + ++ I Sbjct: 61 GIEVLRRLRKAEVF--TPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCI 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|225567891|ref|ZP_03776916.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM 15053] gi|225163292|gb|EEG75911.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM 15053] Length = 236 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED+ L +E+ Y + + NG +A+ A PD+I+MD+ L ++ G+++ Sbjct: 9 VLVVEDDAPVRNLITTTLESQNYKYMTSANGSQAVMSAASGNPDIILMDLGLPDMDGVDV 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+I+ S P+I ++A + D+ G + Y++KP S+ + ++ + Sbjct: 69 IKKIRTWSVA---PIIVISARSDDKDKVDALDAGADDYLTKPFSVEELLARLRSTLRR 123 >gi|241204994|ref|YP_002976090.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858884|gb|ACS56551.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 246 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L ++ +G +G + + D+I++D+ + GL Sbjct: 6 HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAVDLIVLDVMMPGDDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAVLRR 123 >gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 769 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 67/122 (54%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN +N+ + + L+ G+ A +G AL + D++ MD Q+ + G Sbjct: 498 RILLVEDNPVNLLVAQKLLAVLGFEADTATDGEAALASMESTRYDMVFMDCQMPVLDGYA 557 Query: 64 ITKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T++ + +S + IP++A+TA AM GD ER G + Y+SKP++ +++++ Sbjct: 558 ATRRWRAMETESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKPVAREQLDACLQRWL 617 Query: 121 GE 122 Sbjct: 618 PR 619 >gi|121998947|ref|YP_001003734.1| response regulator receiver protein [Halorhodospira halophila SL1] gi|121590352|gb|ABM62932.1| response regulator receiver protein [Halorhodospira halophila SL1] Length = 120 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 59/120 (49%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D+ ++ ++ GY + +G +AL A+ D++I D+ + ++ G Sbjct: 1 MAKILAVDDSASMRQMVTYTLKQQGYEVTEAVDGTDALTKAKAGGFDLVITDVNMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + + ++++ + P++ +T + ++ + G ++ KP + TIKK + Sbjct: 61 ITLVRELRGLPAFKFTPILLLTTESAPEKKQEGKAAGATGWLVKPFDPDQLVNTIKKVVR 120 >gi|119776083|ref|YP_928823.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768583|gb|ABM01154.1| response regulator receiver modulated metal dependent phosphohydrolase [Shewanella amazonensis SB2B] Length = 340 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 1/118 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 V++V+D N+ + ++ Y +G AL LA + PD+I++D+ + +SG Sbjct: 4 ATVLVVDDTPENIDILVGILGQD-YKVKVAIDGPRALALALKSPPDLILLDVMMPGMSGY 62 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E+ +++K++ IPVI VTA A DE + + G YI+KP+S I +K ++ Sbjct: 63 EVCRRLKQEPMTAHIPVIFVTALAEVADETQGFELGAVDYITKPVSAPIVKVRVKTHL 120 >gi|325282997|ref|YP_004255538.1| response regulator receiver and SARP domain-containing protein [Deinococcus proteolyticus MRP] gi|324314806|gb|ADY25921.1| response regulator receiver and SARP domain protein [Deinococcus proteolyticus MRP] Length = 345 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 68/122 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ +KL ++ SG+ + +EAL+L + PD++I D+ + ++G Sbjct: 1 MPKILVVDDDAAILKLISVILTRSGHDVRTASHPVEALDLMKVFVPDLVISDVVMPYMTG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L+ ++++ED +L +P + +++ A + D R G + Y+ KP + + ++ + Sbjct: 61 LDFLEKMREDEKLARVPFMLLSSHAERADVRRGMNLGADDYLPKPFTPADLNGAVEARLR 120 Query: 122 EA 123 A Sbjct: 121 RA 122 >gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor salsuginis DSM 16511] Length = 1054 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 3/116 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ EDN +N KL R +E G NG EA EL +Q+ D+I MDIQ+ ++G+E Sbjct: 760 KILVAEDNPINQKLIRTTLEQFGADVTLASNGKEAFELRKQNDYDLIFMDIQMPVMNGIE 819 Query: 64 ITKQI---KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T++I ++ + L IP++A+TA A+ GD ER + G + YI KPI++ + I Sbjct: 820 ATREILHYEQVNHLPHIPIVALTANALTGDRERYLEAGLDNYIPKPINIPELKQII 875 >gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 226 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +V++++D ++ R + GY + +G AL A +HKPDV+++D+ L +ISG Sbjct: 1 MTRVLVIDDEPQILRALRINLSVRGYEVITASSGAGALRAAAEHKPDVVVLDLGLPDISG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +++ ++ PVI ++A D+ G + Y++KP + F+ ++ + Sbjct: 61 IDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 230 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +KK++I+ED+ + ++ GY G+ ++A Q D++I+DI L I+G Sbjct: 1 MKKILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMALQPGVDLLILDINLPGING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ + ++ E +P+I +TA D+ G + Y+ KP + + ++ + Sbjct: 61 FEVCRSVRA--EKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 619 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++VED +N ++ + ++ G NG+EALE +Q++ D I+MD + + G E Sbjct: 477 KVLVVEDTRVNQQVIQVMLNLLGLEVDIANNGVEALEYCQQNEVDAILMDCHMPVMDGYE 536 Query: 64 ITKQIKEDSELQE-IPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T++I++ +P+IAVTA +K D ER + G ++SKP+ E + Sbjct: 537 ATQKIRQLEGWAAYVPIIAVTANVIKEDRERCFEIGMNGFLSKPVKPKEIEEAL 590 >gi|260462562|ref|ZP_05810769.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031758|gb|EEW33027.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 239 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++IV+D++ L ++ + G +G+E + R+ + D+I++D+ L SGL Sbjct: 5 AHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIEMETILRRAQVDLIVLDVMLPGKSGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + ++ P+I +TA D + G + Y+ KP + I+ + Sbjct: 65 ELCRDLRAQ---YSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121 >gi|228907578|ref|ZP_04071435.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL 200] gi|228852070|gb|EEM96867.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL 200] Length = 229 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+++I+ED + +L +D +E +GY +G + L+ D++I+DI L I G Sbjct: 1 MKRILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 EI KQ++ + ++IP++ V+A + D+ + G + YI KP S S + + ++ Sbjct: 61 YEICKQVRLE---KDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLA 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V+IVED + + + Y NG +AL+ D+I++DI + I GL+ Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGLQ 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ D+ PV+ +TA D + G + Y+ KP + + I+ + Sbjct: 62 VLQRLRADNNT--TPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 118 >gi|225013067|ref|ZP_03703482.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] gi|225002795|gb|EEG40776.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-2A] Length = 233 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED+ + ++ + + Y +NG+E E ++ D+ I+D+ + G Sbjct: 6 KKILIVEDDPNFGSILKEYLIINDYDITLAKNGIEGFEKFKKDDFDLCILDVMMPYKDGF 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K+I+E +++ IP+ +TA +K D + K G + Y++KP + + IK + Sbjct: 66 TLAKEIREKNDV--IPIFFLTAKNLKEDVLKGFKIGADDYLTKPFDSDVLLAKIKAILNR 123 >gi|261406973|ref|YP_003243214.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283436|gb|ACX65407.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 246 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 + ++I +D +L R +E GY L+ +G EA + + D+ ++DI + E+ G Sbjct: 11 RTILIADDESDITELLRLFLEREGYRVLEAISGREAWNILHREPVDLAVVDIMMPELDGY 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++ +I+E+ L PVI ++A D+ G + +ISKP S + IK + Sbjct: 71 QLIARIRENHRL---PVIILSAKNGDVDKVTGLGLGADDFISKPFSPIEVVARIKAQLRR 127 >gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 929 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 3/115 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D E+N +L R ++E G+ +Q NG+EA++ AR+ + D++ MDIQ+ + G E Sbjct: 673 ILLVDDVEINRELARIILEKRGHRVVQAANGLEAVDAARKERFDLVFMDIQMPLMDGFEA 732 Query: 65 TKQIKEDS---ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 T +I+ LQ +PVIA+TA+A++GD +R G + YI+KPI I Sbjct: 733 TNEIRSFELSQGLQPVPVIAMTAYALQGDRDRCLAAGMDGYIAKPIKEDDLCRVI 787 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEA---LELARQHKP-DVIIMDIQLQEISG 61 ++V+D +N +L + G L + EA LE AR +P +++ D+Q+ + G Sbjct: 530 LVVDDIAINRQLLERFLTRWGMDVLTAGSAEEAFSMLEYARSRRPVQLLLTDLQMPDCDG 589 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +QI+ D E+ ++ + + +GD R R+ Y++KP+ S E +K I Sbjct: 590 WGLVEQIRNDQRYDELKLVLLPSAGKRGDARRCRELKVNGYLTKPVIHSELYEALKAII 648 >gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136] gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136] Length = 1466 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDN+ + + ++ Y L+ NG +++A + PD+II DI + + +G+E+ Sbjct: 1209 ILLVEDNDELRRFLKTIL-AESYSILEADNGETGIKIALEQLPDIIISDIMMPQKNGIEL 1267 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++K + IP+I ++A + + + G + YI+KP S + I + + Sbjct: 1268 LNELKNNISTSHIPIILLSAKSSIESKLEGMQYGADDYITKPFSATYLKARIHNLVEQ 1325 >gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 2/107 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I+ED+ ++ +D E Y R+G E L A PD++++DI L +++G EI Sbjct: 6 VLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKMNGYEI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 + I+ + ++P+I +TA + D R + G + Y++KP S+ Sbjct: 66 CRAIRA--KRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRE 110 >gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas palustris CGA009] gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + + +GY+ + +G E L D +++DI L ++ G+ Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + + + +S + +PV+ +TA D+ + G + Y++KP L + I+ + + Sbjct: 62 VLEAWRRNS--RAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRS 119 >gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 223 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R + + Y NG + L LA D++++D+ L E+ G E Sbjct: 2 RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PV+ +TA D+ + G + Y+ KP + + F+ I+ + A Sbjct: 62 VLRRLRAQ---KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRA 118 >gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFTLQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 223 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VED + ++ GY A R+G++ L A + DVI++D+ + ++ G E+ Sbjct: 3 ILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMPKMDGWEV 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +++++++ + PV+ +TA D + + G + Y+ KP S + + ++ Sbjct: 63 LRRLRKET---DTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRR 117 >gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia coli M718] gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia coli M718] Length = 260 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520] Length = 260 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|300869425|ref|ZP_07114010.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300332555|emb|CBN59208.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 358 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 58/117 (49%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++I++D N + L+ Y +G EA+ PD+I++D+ + E G+E+ Sbjct: 6 ILIIDDEPDNFDVIETLLSDPDYQLHYAASGQEAIASLDTFNPDLILLDVMMPETDGIEV 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QIK S+ Q +P++ VTA + K D G + +I+KP++ + + Sbjct: 66 CRQIKAMSKWQAVPIVMVTALSSKSDLAYCLTAGADDFITKPVNAIELRARVHSMLR 122 >gi|253569328|ref|ZP_04846738.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] gi|251841347|gb|EES69428.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 1_1_6] Length = 1324 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVEDN+ + + Y + NG+EAL++ +++I DI + E+ GLE+ Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + + IP+I +TA + + G +AYI KP S+ + + Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLL 1196 >gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 258 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED+ L ++ +GY N A +L + + D+++ DI + ++ G + Sbjct: 37 KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGYQ 96 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++++ IP++ +TA +E+ G + Y+ KPI+ + + IK + A Sbjct: 97 FAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRA 154 >gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407] gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407] gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 883 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 763 KTILIVDDDHRNIFTLQNALKKQNANIITAQNGLECLEILKSNTNIDLILMDIMMPNMDG 822 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 823 YETMENIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881 >gi|256378007|ref|YP_003101667.1| multi-sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] gi|255922310|gb|ACU37821.1| multi-sensor signal transduction histidine kinase [Actinosynnema mirum DSM 43827] Length = 1370 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 55/116 (47%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V++ +DN + L+ ++GY +G ALE R PD+++ D+ + + GL Sbjct: 608 ARVVVADDNADMREYLTRLLRSAGYRVRAVADGRAALEEVRARTPDLVVTDVMMPRLDGL 667 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++ D +PV+ ++A A + G + Y+ KP + + + ++ Sbjct: 668 GLVAALRADQRTAGVPVVLLSARAGQEASIEGLAAGADDYLVKPFAAADLLARVRA 723 >gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1210 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 67/118 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +D N ++ L+ G + NG EAL L +Q +PD+I MD+++ + G + Sbjct: 996 RIIVTDDKPENRQILVKLLTFPGLEVREVENGQEALTLWQQWQPDLIWMDMRMPIMDGYQ 1055 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+QI+ S+ Q +IA+TA+A K D + GC Y++KP + +++Y+G Sbjct: 1056 ATQQIRCQSDSQTPIIIALTAYASKSDRASALEAGCNDYVTKPFQVETLFAKMEEYLG 1113 >gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5] gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012] gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli FVEC1412] gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280] gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9] gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5] gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012] gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli FVEC1412] gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella boydii ATCC 9905] gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167] gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280] gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9] Length = 260 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN+ + + +GY+ +G + L LA + +II+DI L + G + Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I + ++ ++ PVI +TA D R G Y+ KP S S + ++ + + Sbjct: 99 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154 >gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 242 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 4/124 (3%) Query: 1 MLK--KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE 58 M K + +V+D+ +L + GY +G + +PD++++D+ + Sbjct: 1 MAKQQTIWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQRPDLVVLDLMMPG 60 Query: 59 ISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 GL I ++++ ++PV+ +TA D + G + Y++KP I+ Sbjct: 61 DDGLTILRRLR--DGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEA 118 Query: 119 YIGE 122 + Sbjct: 119 VLRR 122 >gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++IVED L D + + + +G+ + R + P +I++D+ L Sbjct: 1 MNERILIVEDESRLSSLLADYLRQANFEPHILADGLPVVSWVRDNHPSLILLDLMLPGRD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+EI K+I+ ++P+I VTA + D + G + YI KP S + +K + Sbjct: 61 GMEICKEIR---GFSDVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|29348306|ref|NP_811809.1| two-component system sensor histidine kinase/response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|29340210|gb|AAO78003.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides thetaiotaomicron VPI-5482] Length = 1326 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IVEDN+ + + Y + NG+EAL++ +++I DI + E+ GLE+ Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K + + IP+I +TA + + G +AYI KP S+ + + Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLL 1196 >gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241] gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241] Length = 221 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDN +L R+ + + G E + L +++ D++++D+ L +I G Sbjct: 1 MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K ++ S ++P+I +T + E + + G + YI+KP ++F++ ++ + Sbjct: 61 YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 229 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEIS 60 ++KV+++ED E ++ +GY ++ G +AL +++ V ++DI L I Sbjct: 1 MRKVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGID 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++I+ +I +I +TA + D+ G + Y++KP S + + Sbjct: 61 GFEVCRRIRAMDN--KIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALF 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121] Length = 224 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + + +IV+D+ + +E + NG EAL H+ D+ I+DI + + G Sbjct: 1 MNRCLIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMMHGMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ IKED ++PVI +TA D+ER G + Y++KP + + IK + Sbjct: 61 FELCHMIKED---YDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++I+ED E ++ GY +G LE A DVI++D+ L E++G Sbjct: 1 MSRILIIEDEENLANFVNLELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ ++++E L++ P+I +TA D G + YI KP ++ + ++ + Sbjct: 61 IEVARRVRE---LKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|255010809|ref|ZP_05282935.1| putative two-component system sensor kinase/response regulator fusion protein [Bacteroides fragilis 3_1_12] gi|313148611|ref|ZP_07810804.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] gi|313137378|gb|EFR54738.1| two-component system sensor histidine kinase/response regulator [Bacteroides fragilis 3_1_12] Length = 1331 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + + Y NG EAL + +++ P++II DI + E+ G Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSDN-YTIQTCSNGKEALTIVKEYMPELIISDIMMPEMRGD 1127 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI-G 121 E+ IK D E IP+I +TA + + K G + YI KP ++ I T+ + Sbjct: 1128 ELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATVANLLTN 1187 Query: 122 EA 123 A Sbjct: 1188 RA 1189 >gi|238063370|ref|ZP_04608079.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. ATCC 39149] gi|237885181|gb|EEP74009.1| multi-sensor signal transduction histidine kinase [Micromonospora sp. ATCC 39149] Length = 1347 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 55/115 (47%), Gaps = 1/115 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ +DN + L+ S + + +G+EAL A + D+++ D+ + + G Sbjct: 646 RILLADDNADLREHVARLLCPS-WEVVAVPDGVEALRRAMETPFDLVLTDVMMPRLDGFG 704 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 + ++ D + +P++ ++A A + G + Y++KP S + ++ Sbjct: 705 LVTALRADPRTRHVPIVLLSARAGSAEAVAGLAVGADDYLTKPFSSQELIARVRA 759 >gi|237718881|ref|ZP_04549362.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229451659|gb|EEO57450.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1331 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN+ ++ ++ ++ Y + NG E LE P ++I DI + E+SG E Sbjct: 1084 KILIVEDNDSLREMLVNIFKSL-YTVITAVNGKEGLEKTCSEMPHIVISDIIMPEMSGTE 1142 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + IK++ + IPV+ +TA K G + YI+KP +++I + + Sbjct: 1143 LCLAIKQNFDTCHIPVVLLTAKTAIEHNLEGLKMGADDYITKPFNINILLSRCNNLV 1199 >gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|229120612|ref|ZP_04249857.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201] gi|228662897|gb|EEL18492.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 225 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++++D +++ + +E GY +Q +G+EAL+ + PD++I+D+ L +IS Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++SE +P+I +TA + + G + YI+KP S + + + Sbjct: 61 GENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] Length = 243 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++ ED + + +G+ + +G +AL+ D++I+D+ + + G E Sbjct: 18 KLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGWE 77 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ E+PV+ +TA D + + G + Y+ KP + S + ++ + Sbjct: 78 VLRLVRASGN--EVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 134 >gi|94500275|ref|ZP_01306808.1| CheY-like receiver protein [Oceanobacter sp. RED65] gi|94427574|gb|EAT12551.1| CheY-like receiver protein [Oceanobacter sp. RED65] Length = 120 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 66/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++ V+D+ ++ ++ +G+ L+ +G EAL++A+ D+++ D+ + ++G Sbjct: 1 MAKILAVDDSASMRQMVSFTLKGAGHDVLEASDGAEALKIAQGQAVDLVLSDVNMPNMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K +++ S + P++ +T + + + G +I KP + + TIKK +G Sbjct: 61 IELCKNLRQLSSYKFTPILMLTTESAGDKKMEGKSAGATGWIVKPFNPDQLLSTIKKVLG 120 >gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPD--VIIMDIQLQEISG 61 K+++V+D++ ++L ++ GY + +G EA+ PD ++I+D+ + +SG Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKL-TTTPDIALMILDVMMPNMSG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ K++++DS +IP+I V+A D+ + G + Y+SKP + M ++ + Sbjct: 61 IEVIKEVRKDS---DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLR 117 Query: 122 EA 123 + Sbjct: 118 RS 119 >gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718] gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 229 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED R +E +GY+ + +G E L LA +++PD I+DI L SGLE Sbjct: 2 RILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLPGKSGLE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I K ++E L +P++ +TA + D+ + + G + Y++KP + ++ + A Sbjct: 62 IIKALRERGSL--LPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRA 119 >gi|47564964|ref|ZP_00236008.1| sensor histidine kinase/response regulator [Bacillus cereus G9241] gi|47558337|gb|EAL16661.1| sensor histidine kinase/response regulator [Bacillus cereus G9241] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|329962237|ref|ZP_08300243.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] gi|328530345|gb|EGF57222.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Bacteroides fluxus YIT 12057] Length = 1326 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++VEDNE +++ L+ Y NG E L A + +P++I+ DI + E+SG+E+ Sbjct: 1074 ILVVEDNEELLQILTSLLSPL-YRVSIAMNGKEGLRKAMEERPELILSDIMMPEMSGIEM 1132 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +IK + EL IPV+ +TA + + G + YI KP + + + I I Sbjct: 1133 CSKIKNNFELCHIPVVLLTALTSDNKKMEGLQCGADDYIEKPFNNKMLLGHIANIIR 1189 >gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 240 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED+ + + Y + + +G E L L Q D +I+D+ L + GL Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I +A + + + G + Y++KP S+ + +K + Sbjct: 65 EICR--RARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 >gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus prevotii ACS-065-V-Col13] Length = 232 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IV+D + + + ++ GY ++ +G EA+++ KP V I+DI L ISG E Sbjct: 5 KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEKPAVAILDIMLPGISGYE 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I++ S + +I V+A + D+ + G + YI KP + + I+ + Sbjct: 65 VCERIRDISPMTG--IIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRR 121 >gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 307 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + + +E SG+ L +G AL +A + PD+I++D + + G + Sbjct: 11 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++K ++ + ++PV+ +T R + G Y++KPI++ I+ ++ A Sbjct: 71 CTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129 >gi|197121057|ref|YP_002133008.1| response regulator receiver protein [Anaeromyxobacter sp. K] gi|196170906|gb|ACG71879.1| response regulator receiver protein [Anaeromyxobacter sp. K] Length = 123 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 66/120 (55%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++V+D+ + + R ++ S Y + R+G E +E AR +PD+I+MD+ + + G Sbjct: 4 KKILLVDDSSTVLLMERMILAKSAYDVVTARDGQEGIEKARAERPDLILMDVVMPRMDGF 63 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E ++++E E IPVI VT E GC Y++KPI+ + ++ +G+ Sbjct: 64 EACRKLREHEETAAIPVIMVTTRGELASVETGYASGCTDYVTKPINGLELLAKVRSCLGQ 123 >gi|158339143|ref|YP_001520320.1| response regulator receiver domain-containing protein [Acaryochloris marina MBIC11017] gi|158309384|gb|ABW31001.1| response regulator receiver domain protein [Acaryochloris marina MBIC11017] Length = 149 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 61/117 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D E + L+ GY +G A++ +PDVI++D+ + ++ G+E+ Sbjct: 8 ILVIDDEERVFDVIEGLLLREGYQLTYAASGPAAIQQMDSLQPDVILLDVMMPQMDGIEV 67 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +QIK + + IP+I VTA K D R G + +ISKPI+ ++ + Sbjct: 68 CRQIKANPNWKHIPIIIVTALTSKEDLARSLDAGADDFISKPINSLELRARVRSMLR 124 >gi|320162405|ref|YP_004175630.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] gi|319996259|dbj|BAJ65030.1| response regulator receiver protein [Anaerolinea thermophila UNI-1] Length = 128 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 42/118 (35%), Positives = 78/118 (66%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN N++L R L+E +G+ + +G++ LE AR KPD++++D+ L E+ G Sbjct: 6 RILVIEDNADNLELVRFLLEQAGFQIISAMDGLDGLEKARSLKPDLVLLDMSLPELDGWH 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + KQ+KE E I ++A+TA + GD R + GC+ +ISKP++++ F I++Y+ Sbjct: 66 LAKQLKESPETAHILIVALTAHTLPGDRRRALEAGCDGFISKPLNVARFASQIQEYLR 123 >gi|315920019|ref|ZP_07916259.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] gi|313693894|gb|EFS30729.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D2] Length = 1427 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289 >gi|299148477|ref|ZP_07041539.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] gi|298513238|gb|EFI37125.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. 3_1_23] Length = 1430 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289 >gi|298482118|ref|ZP_07000306.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] gi|298271675|gb|EFI13248.1| two-component system sensor histidine kinase/response regulator, hybrid (one-component system) [Bacteroides sp. D22] Length = 1430 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289 >gi|298482890|ref|ZP_07001072.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] gi|298270862|gb|EFI12441.1| two-component system sensor histidine kinase/response regulator, hybrid (one component system) [Bacteroides sp. D22] Length = 1336 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++IVEDN+ + Y NG EAL + ++KP+++I DI + E+ G Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1129 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG- 121 E+ + IK + E IPVI +TA + D + G + Y+ KP ++ I + + Sbjct: 1130 ELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLAN 1189 Query: 122 EA 123 A Sbjct: 1190 RA 1191 >gi|295086722|emb|CBK68245.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A] Length = 1455 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1196 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1254 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1255 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1314 >gi|294643100|ref|ZP_06720934.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294808952|ref|ZP_06767676.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292641559|gb|EFF59743.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294443833|gb|EFG12576.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 1401 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1142 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1201 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1260 >gi|293369330|ref|ZP_06615915.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|292635497|gb|EFF54004.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] Length = 1401 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1142 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1201 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1260 >gi|291548314|emb|CBL21422.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 222 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 4/118 (3%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K +++VED+ L ++T Y L NG A+ A H PD++++D+ L ++ Sbjct: 1 MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGASAILEASSHNPDIVLLDLGLPDM 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 G+E+ K+I+ +P+I ++A + D+ G + YI+KP S+ + I+ Sbjct: 61 EGVEVIKKIR---TWSNMPIIVISARSEDMDKIEALDAGADDYITKPFSVEELLARIR 115 >gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus K5030] gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus K5030] Length = 229 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++++D+ L ++++ G+ + +G L D+I++D+ + +++G+E Sbjct: 4 ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNGMET 62 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K+++E+ E PV+ +TA + D + G + Y+ KP S + I+ + Sbjct: 63 LKRLRENWET---PVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117 >gi|260171706|ref|ZP_05758118.1| two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') [Bacteroides sp. D2] Length = 1398 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1142 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1200 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1201 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1260 >gi|237721244|ref|ZP_04551725.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] gi|229449040|gb|EEO54831.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_2_4] Length = 1430 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289 >gi|237714196|ref|ZP_04544677.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262408426|ref|ZP_06084973.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] gi|229445688|gb|EEO51479.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. D1] gi|262353978|gb|EEZ03071.1| two-component system sensor histidine kinase/response regulator [Bacteroides sp. 2_1_22] Length = 1430 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289 >gi|229028788|ref|ZP_04184892.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271] gi|228732520|gb|EEL83398.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271] Length = 883 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E L++ + + D+I+MDI + + G Sbjct: 763 KTILIVDDDHRNIFALQNALKKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 822 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 823 YETMEHIRTNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 881 >gi|226944602|ref|YP_002799675.1| response regulator [Azotobacter vinelandii DJ] gi|226719529|gb|ACO78700.1| response regulator [Azotobacter vinelandii DJ] Length = 356 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 8/126 (6%) Query: 2 LKK-------VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDI 54 +K+ +++V+D N+++ R +++ Y L ++G AL+L R +PD+I++DI Sbjct: 7 MKRMKDPRHTLLLVDDETTNLQVLRHTLQSD-YRLLFAKDGQTALDLVRSDRPDLILLDI 65 Query: 55 QLQEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 + +SG E+ K +K+D IPVI VTA + +E + G YISKP + I Sbjct: 66 MMPGLSGYEVCKALKQDPCTTAIPVIFVTALSEAANERQGLDLGAVDYISKPFNPHIVQA 125 Query: 115 TIKKYI 120 ++ ++ Sbjct: 126 RVRTHL 131 >gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 509 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+E+ +++ L+ Y+ R+G A EL + D+I++D+ L ++ G+ Sbjct: 2 RILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVMLPKLDGIS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++E + V+ +TA D+ + G + Y+ KP ++ + Sbjct: 62 FCRRLREQK--SPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPALTRR 118 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EISG 61 KV+ V+D+ + + L+E G N E ++P+ +I+DI + G Sbjct: 375 AKVLAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMPSGTEG 434 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + + ++ + +P++ +++ ++ G + Y++KPI + I + Sbjct: 435 LDLCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKPIVPKELLIRISNGLQ 494 Query: 122 E 122 Sbjct: 495 R 495 >gi|196035114|ref|ZP_03102520.1| sensor histidine kinase/response regulator [Bacillus cereus W] gi|195992178|gb|EDX56140.1| sensor histidine kinase/response regulator [Bacillus cereus W] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|160886963|ref|ZP_02067966.1| hypothetical protein BACOVA_04977 [Bacteroides ovatus ATCC 8483] gi|156107374|gb|EDO09119.1| hypothetical protein BACOVA_04977 [Bacteroides ovatus ATCC 8483] Length = 1427 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +KV+I+ED+ + R+ I + +G E AR + D+II D+ + ++G Sbjct: 1171 RKVLIIEDDNDIREFLREEIGAY-FEVEVAADGTSGFEKARTYDADLIICDVLMPGMTGF 1229 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+TK++K D + IP+I +TA + G +AYI+KP S+ + + + + I + Sbjct: 1230 EVTKKLKTDFDTSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSVKLLLARVFRLIEQ 1289 >gi|74318569|ref|YP_316309.1| response regulator receiver domain-containing protein [Thiobacillus denitrificans ATCC 25259] gi|74058064|gb|AAZ98504.1| Response regulator receiver domain protein (CheY) [Thiobacillus denitrificans ATCC 25259] Length = 121 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 62/116 (53%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D+ +L+ +GY+ +G EA+ A+Q PD+I+MD+ + ++G + Sbjct: 5 RILVVDDSPTERFFLSELLVKNGYLVSMAESGEEAVAQAKQTLPDLIVMDVVMPGMNGYQ 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 T+ I ++ + IPVI T + D+ + G +AY+ KP+ + IK Sbjct: 65 ATRMISKEEATKHIPVIMCTTKGQETDKVWGMRQGAKAYLVKPVKPEDLLSQIKAL 120 >gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L] gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L] Length = 896 Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|317477866|ref|ZP_07937052.1| two component regulator propeller [Bacteroides sp. 4_1_36] gi|316906002|gb|EFV27770.1| two component regulator propeller [Bacteroides sp. 4_1_36] Length = 1360 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ R L+ Y + N +AL+ + PD+++ D+ + G + Sbjct: 1114 TLLVVDDDTEVAHYLRTLLSAH-YKVICRFNADDALKALHEESPDLVLSDVVMPGKDGYQ 1172 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++IKED +L +PVI VTA A ++ G +AY++KP + + IK + Sbjct: 1173 FCREIKEDLQLCHLPVILVTAKATVENQVEGLDTGADAYVTKPFDPAYLLALIKSLL 1229 >gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 225 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN ++ + ++E + R+G EAL LA+Q+ D+I++D+ L E+ G Sbjct: 2 KLLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGFS 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I K +++D E PV+ VTA D + G + YI KP + I+ + + Sbjct: 61 ILKTLRKDRV--ETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRS 118 >gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 309 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 64/119 (53%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ +++ D ++ +G + +G A+ + Q PD+I++D + + G E Sbjct: 11 VLVVDDSPETLRMLTDALDGAGMTVMVALDGAAAMRIVEQITPDIILLDAMMPGLDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +++K + + ++PVI +T R + G Y++KPI ++ + I+ ++G A Sbjct: 71 CRRLKRNPGVSDVPVIFMTGLTESEHIVRGLEAGGVDYVTKPIVIAEMLARIRVHLGNA 129 >gi|308185491|ref|YP_003929623.1| two-component system regulatory protein [Pantoea vagans C9-1] gi|308055771|gb|ADO07941.1| two-component system regulatory protein [Pantoea vagans C9-1] Length = 231 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 K+V+I+ED+ + ++ Y + +G LE A + +PD+I++DI L ++G Sbjct: 3 SKRVLIIEDDADAAGVLEAYLKRENYEVMIAGDGPGGLETAGRWQPDLILLDIMLPGMNG 62 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++ + PVI VTA D + G + Y+ KP + ++ + Sbjct: 63 TEVLAALRRRD---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119 Query: 122 EA 123 + Sbjct: 120 RS 121 >gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 315 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 58/116 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+IV+D N+ + D ++ SG+ L NG AL A + +P +I++D + + G E+ Sbjct: 14 VLIVDDVPDNLAVLHDALDESGFTVLVANNGEAALVAAIEAQPGIILLDAIMPGMDGFEV 73 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + IP+I +T + G YI+KPI + I ++ Sbjct: 74 CRKLKADINTRHIPIIFMTGLTESEHVVAAFQAGGTDYITKPIRAIEVLARIDAHM 129 >gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] Length = 223 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + KV++VED+ KLF ++ +GY +++ ++G AL++ + D+II DI + + G Sbjct: 1 MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKEYIDLIISDIMMPNMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +TK I+E + +P++ +TA D++ + G + Y+ KPI ++ + + + Sbjct: 61 YTLTKLIRESNN--NVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC BAA-613] gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC BAA-613] Length = 233 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K++ + +D L + + GY +G E PD+II+DI + + Sbjct: 1 MAKRIYVADDELHIRTLIQTFLVNEGYEVETFEDGKSLFEAFHASCPDLIILDIMMPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + I+ +S +P+I V+A D G + Y+ KP + +K Sbjct: 61 GFALCTAIRRESR---VPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALF 117 Query: 121 GEA 123 A Sbjct: 118 RRA 120 >gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 225 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M + +++++D +++ + +E GY +Q +G+EAL+ + PD++I+D+ L +IS Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G + ++I+++SE +P+I +TA + + G + YI+KP S + + + Sbjct: 61 GENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVL 117 Query: 121 GE 122 Sbjct: 118 KR 119 >gi|158521557|ref|YP_001529427.1| histidine kinase [Desulfococcus oleovorans Hxd3] gi|158510383|gb|ABW67350.1| histidine kinase [Desulfococcus oleovorans Hxd3] Length = 545 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+DN +N K+ ++ NG +A+ + D++ MD + + G E T Sbjct: 429 LVVDDNPVNRKVLVAMLTRHKISCDVVENGKQAVAACARKHYDLVFMDCLMPVMDGYEAT 488 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 K+I+E + +P+IA+TA + +R G YI+KP + ++ +Y+ E+ Sbjct: 489 KKIRE--ARKALPIIAITADVVPETRDRCLAAGMNDYITKPFKMQDLLDMTDRYLKES 544 Score = 42.8 bits (101), Expect = 0.015, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 13/122 (10%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALEL----ARQHKPDVIIMDIQLQEI 59 + ++V D+ K+ I G + + +A++ AR D +I D + Sbjct: 276 RCLVVGDDPTGHKVLDWYIHRWGGVCKHCDSRKDAVQWLETSARALPFDAVITDF----L 331 Query: 60 SGL-----EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFME 114 G I I++++ +P++ + GD +R G AY++KP+ Sbjct: 332 HGNPHKYKTIAAAIRQEACAATVPLLCLIPRERTGDASFLRHYGYHAYLTKPVRQVHLYN 391 Query: 115 TI 116 + Sbjct: 392 AL 393 >gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96] gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis] gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96] Length = 220 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M ++++VED++ R + + Y +G EA ++ ++I+DI L ++ Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+ ++ + + + P++ +TA + ++ R + Y++KP + I ++ ++ + Sbjct: 61 GHELLREFRAQN---DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALL 117 Query: 121 GEA 123 + Sbjct: 118 RRS 120 >gi|71898251|ref|ZP_00680425.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71731990|gb|EAO34047.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 394 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++EDN D +E G+ +G+ L LA H+ D I++D+ L + G+E Sbjct: 171 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGIE 230 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + ++ PV+ +TA ++ G + Y+ KP +L + Sbjct: 231 VCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 288 >gi|332876711|ref|ZP_08444469.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685270|gb|EGJ58109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 232 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++V+D E + + +E GY + EAL++ K ++++D+ + EISG + Sbjct: 6 RILVVDDEEDLCDILKFNLENEGYEVETANSAEEALKM-DLTKFHLLLLDVMMGEISGFK 64 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K +K+ E ++IP+I +TA + D G + YISKP SL IK + Sbjct: 65 MAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVLRR 123 >gi|301052639|ref|YP_003790850.1| sensor histidine kinase [Bacillus anthracis CI] gi|300374808|gb|ADK03712.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI] Length = 896 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] Length = 229 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++VED E K + +E GY + +G E +++AR +P ++++DI L + Sbjct: 1 MAVKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 G + K +++ E + +I +TA A D+ + G + Y++KP + + IK Sbjct: 61 GFAVCKVLRK--EFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKS 116 >gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 231 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++ED+ ++ +G+ L+T G +ALEL QH D++I+D+ L I G Sbjct: 1 MTTILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNVDIVILDVMLPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 + K I++++E +I +I +TA + D+ G + YI KP S+ + ++ + Sbjct: 61 FRVCKSIRKNNE--DIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLR 118 Query: 122 E 122 Sbjct: 119 R 119 >gi|227832502|ref|YP_002834209.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183632|ref|ZP_06043053.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453518|gb|ACP32271.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++V+D+ ++ ++E G + +G EA+ R+H PD+I++D+ L ++ Sbjct: 1 MAPKILVVDDDPAIAEMLTIVLEAEGLEPIAVNDGNEAIPAFREHDPDLILLDLMLPGMN 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSI 111 G++I + I+ +S +P++ +TA D + G + YI+KP Sbjct: 61 GVDICRAIRTES---SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKE 108 >gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820] gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820] Length = 896 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana] Length = 240 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++V+D+ + +ET GY +G AL+ H P + I DI++ + G Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPRMDG 67 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +E+ +++++ S +IPVI +T+ + DE K G + +I+KP S + +E +K + Sbjct: 68 MELLRRLRQKS---DIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILR 124 Query: 122 EA 123 A Sbjct: 125 RA 126 >gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 224 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++++ED + + + +GY+ NG++ L LA + + D+I++D+ + E+ G Sbjct: 2 RILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPEMDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + K++ + PV+ ++A D + G + Y+ KP S + + I+ + Sbjct: 62 VMKKL---GARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRR 117 >gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 229 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV+++ED+ L + + YI + L+ D++I+D+ L + GL Sbjct: 2 KVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGLS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + I++ +P++ +TA D+ G + Y+ KP L + ++ + Sbjct: 62 FCQTIRQRGH--SLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRR 118 >gi|300727408|ref|ZP_07060817.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] gi|299775288|gb|EFI71887.1| two-component system sensor histidine kinase/response regulator, hybrid [Prevotella bryantii B14] Length = 1268 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++IVEDN +++ Y + NG L+ A PD II D+ + + GL Sbjct: 1013 KLLIVEDNNDLRSFLTEIL-RVNYEVISAENGKIGLQRAVDELPDFIITDVMMPVMDGLS 1071 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + QIK++ ++ IPVI ++A A D + + G + YI+KP S + I+ I + Sbjct: 1072 MVHQIKQNKDICHIPVIVLSAKASLEDRLQGLQEGIDDYITKPFSATYLKRRIENIISQ 1130 >gi|291523694|emb|CBK89281.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] Length = 231 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K++IVED+E + L+E GY NG++ L+ + ++IMDI + +SG Sbjct: 1 MYKILIVEDDETIRNGIKTLLELQGYYVDIAVNGVDGLKKFDE-TYSLVIMDIIMPLLSG 59 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ K+++E+S +P++ +TA + + D + + G + Y+ KP S + +K + Sbjct: 60 IDACKKLREES---SVPILFLTAKSSEIDIMQGFEVGGDDYLVKPFSNMELISRVKALLR 116 Query: 122 E 122 Sbjct: 117 R 117 >gi|307731198|ref|YP_003908422.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585733|gb|ADN59131.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 246 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +V+IV+D+ + L ++++G+ A +G + +P V+++DI + Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL ++ + +IPVI VTA D G + Y++KP + I + Sbjct: 61 GLRALTALRAAGD--DIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVL 118 Query: 121 GE 122 Sbjct: 119 RR 120 >gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISGL 62 K+++V+D++ ++L ++ GY + +G EAL + ++I+DI + ++SG+ Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSGI 61 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ K++++DSE IP++ V+A D+ + G + Y+ KP + M ++ + Sbjct: 62 EVIKEVRKDSE---IPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118 Query: 123 A 123 + Sbjct: 119 S 119 >gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 227 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++VED L R + G+ R+G L AR+ +P ++DI L ++G EI Sbjct: 10 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIALPGLAGTEI 69 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ + PVI +TA + D + G + Y++KP S + ++ + Sbjct: 70 CRRLRAAGDW--TPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRR 125 >gi|264678133|ref|YP_003278040.1| response regulator receiver protein [Comamonas testosteroni CNB-2] gi|262208646|gb|ACY32744.1| response regulator receiver protein [Comamonas testosteroni CNB-2] Length = 173 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQE-IS 60 +KK++IVED+ KL R +E + + G EA E+ ++ KPDV+++D+ + +S Sbjct: 51 MKKILIVEDHADIRKLIRMTLEFRDFEVQEVATGDEAWEVTQRTKPDVVLLDVMMPGKLS 110 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ + IK+ +L++ VI +TA D + G + Y+ KP S +E I+ Sbjct: 111 GLEVCQLIKDSDDLRDTQVIMLTARGSADDRQAGLNAGADEYLVKPFSTLKLLEVIESL 169 >gi|228913678|ref|ZP_04077305.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845966|gb|EEM90990.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 896 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|228932403|ref|ZP_04095285.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827339|gb|EEM73091.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 896 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E LE+ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268] gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++IVED +L +D +E SG+ +G + L+ A + D++I+D+ L G Sbjct: 5 KKILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLMLPGRDGF 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 IT++++ ++IP++ V+A D+ R G + Y++KP S S + +K ++ Sbjct: 65 SITQEVRSK---KDIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLAR 121 >gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] Length = 230 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++ IVED + + +E G+ NG A E Q D++++D+ L + G+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 I K+++E + +P+I +TA D+ G + Y++KP ++ M I+ + + Sbjct: 66 ICKRVRE---VSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRK 121 >gi|327480105|gb|AEA83415.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri DSM 4166] Length = 222 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 VMIV+D N+ L ++ +GY+ L +G ALE ++ KPD++++D + + G E Sbjct: 13 VMIVDDVPDNLALLSGALDQAGYMVLVALDGSSALERMQRLKPDIVLLDAMMPGLDGFET 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++IK L+++PV+ +TA + G Y++KPI + + ++ A Sbjct: 73 CRRIKAQPMLEDVPVLFMTALTESEHVLEGFEAGGIDYVTKPIHTEQVLARVAAHLRTA 131 >gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++EDN +++ ++ E Y G L AR + D I++D+ L + G E Sbjct: 2 KLLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRARSGEFDCIVLDVMLPGMDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + +E+ + PVI +TA D G + Y+ KP + + I Sbjct: 62 LIDRFREEGH--DTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRR 118 >gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 221 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+D+ ++ ++E G A R+G + + +PD++++D+ L + G+ + Sbjct: 2 LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLPGMDGMSVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +QI+ +P+I +TA + D G + Y++KP + IK + Sbjct: 62 RQIRA---TSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRR 115 >gi|295097772|emb|CBK86862.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 153 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +++++IVED + + + + GY A NG + L A + + D+II+D+ L + G Sbjct: 1 MQRILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 +I ++E + PV+ +TA D+ + + G + Y+ KP + + ++ + Sbjct: 61 WQIISALRESGHEE--PVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR 118 Query: 122 EA 123 A Sbjct: 119 RA 120 >gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 222 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 70/122 (57%), Gaps = 2/122 (1%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++VED+ L+R ++E +G+ + NG +AL+ + ++II DI + ++ G Sbjct: 1 MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 ++ ++ + ++PV+ +TA A +++R K G + Y++KPI ++ + ++ + Sbjct: 61 YDLVGSLR--NARFDMPVLMITAKADFENKKRGFKLGADDYMTKPIDVNEMILRVEALLR 118 Query: 122 EA 123 + Sbjct: 119 RS 120 >gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1329 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 74/120 (61%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++VEDNE+N +L L+ + G + NG +ALEL + + D+++MDIQ+ ++GL Sbjct: 974 AKILLVEDNEMNQELAVSLLNSVGLATMVAPNGKKALELLKINAFDLVLMDIQMPVMNGL 1033 Query: 63 EITKQIKEDSE--LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+ I+ S+ + +P+IA++A A + D + K G +YI+KPI + + KY+ Sbjct: 1034 DATRAIRNRSDEYFKNVPIIAMSAKAFQKDRDDCLKAGMNSYIAKPIDPMMLYAELAKYL 1093 Score = 80.9 bits (200), Expect = 6e-14, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 58/130 (44%), Gaps = 15/130 (11%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH------KPDVIIMDIQL 56 K V++V+D E + R + + + + EAL+L + H D+ I+D Q+ Sbjct: 830 KNVLLVDDCERLRSVLRHYLTKLRCVVEEAASVDEALDLIQAHEEAGETPYDLFIVDYQM 889 Query: 57 QEISGLEITK----QIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 ++G + + +++ ++ P+ + + + G + ++KP+ +S Sbjct: 890 PLMNGFDFVQGLPANMRKIPKILMHPIHF-----DEHNYHLATEIGFNSCVAKPLQISSL 944 Query: 113 METIKKYIGE 122 + +++ + E Sbjct: 945 LSAMQEAVDE 954 >gi|13475585|ref|NP_107149.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14026337|dbj|BAB52935.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 130 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 61/120 (50%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+I +D+ L ++L + GY + +G EAL A QH PD+I++D + + GL Sbjct: 6 ARVLICDDDPLLLELMEFRLRAKGYEVITAVDGAEALAKAEQHGPDIIVLDAMMPKADGL 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ ++K D L + PV+ +TA + D + G + Y+ KP + + + I Sbjct: 66 EVLARLKGDPVLSDTPVVMLTARKAERDIVSALEKGADDYLVKPFIPEELLARLARLIAR 125 >gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 63/121 (52%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + ++++EDN +L R+ + + G E + L +++ D++++D+ L +I G Sbjct: 1 MTHILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 I K ++ S ++P+I +T + E + + G + YI+KP ++F++ ++ + Sbjct: 61 YSICKIMRGQS---DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KKV+IV+D +++ + +E G I + +G + LE+ + PD+I++D+ L +++G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI +++ S +P+I +TA + G + YI+KP S + I Sbjct: 65 EICSIVRKRSR---VPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR 121 >gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437] Length = 249 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 58/119 (48%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ED+ L + + + Y NG++ + ++ +I+D+ L ++ G++ Sbjct: 17 HILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLMLPDLDGID 76 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+E + +PVI +TA + D G + Y++KP S+ ++ ++ Sbjct: 77 VLRHIRES---RNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRR 132 >gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 250 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 8/130 (6%) Query: 1 MLKK-VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA------RQHKPDVIIMD 53 M ++++ED+ + RD + SG+ G L + P +I++D Sbjct: 1 MSPTPLLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLD 60 Query: 54 IQLQEISGLEITKQIKEDS-ELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIF 112 + L ++ GL+I ++I+ P++ +TA D + G + Y++KP Sbjct: 61 LMLPDMDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPREL 120 Query: 113 METIKKYIGE 122 + ++ + Sbjct: 121 LARVRALLRR 130 >gi|217969789|ref|YP_002355023.1| response regulator receiver protein [Thauera sp. MZ1T] gi|217507116|gb|ACK54127.1| response regulator receiver protein [Thauera sp. MZ1T] Length = 125 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 71/119 (59%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M K+++++EDN N L R L++ G+ + +G L +A + P +I++DIQL + Sbjct: 1 MNKRILLIEDNAQNRYLARFLLDARGWQVSEAEDGPSGLLIADRTDPAIILLDIQLPGMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G + + ++E+ L +P+IAVT++AM GD E+ GC YI KPI F + +++Y Sbjct: 61 GYAVARGLRENPRLAHVPIIAVTSYAMPGDREQCLAAGCTGYIEKPIDPERFADEVERY 119 >gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M KK++I+ED + + ++ GY NG E LE A + D+I++D+ L E+ Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G E+T++++ + + ++ +TA D G + YI KP ++ + I+ Sbjct: 61 GFEVTRRLQTE---KTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIF 117 Query: 121 GE 122 Sbjct: 118 RR 119 >gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus AQ3810] Length = 1051 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 KV++V+DN +N K+ + +G+ NG EA+++ R + +I+MD + + G E Sbjct: 769 KVLVVDDNTVNQKIAGLHVTKAGFSFDVAANGEEAVDMFRTSQYCLILMDCMMPVMDGFE 828 Query: 64 ITKQIKE----DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TKQI++ ++ IP+IA+TA + D ++ G + Y+ KP + E + K Sbjct: 829 ATKQIRQIELKENRTFRIPIIALTASVVDDDIQKCFDVGMDDYVPKPFKADLLKEKLDKA 888 Query: 120 IG 121 +G Sbjct: 889 VG 890 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELA-RQHKPDVIIMDIQLQEISGL 62 ++++VEDN +N K+ L+ +GY NG A+E+ R D+I+MD + + G Sbjct: 931 RILLVEDNRVNQKVASLLLSKAGYQFEVAENGQIAVEMFQRDGGFDIILMDCMMPVMDGF 990 Query: 63 EITKQIKEDSE---LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E TKQI+ L++ P+IA+TA + D +R G +AY+ KP+ + I+ Sbjct: 991 EATKQIRAYEASLGLEKTPIIALTASVVDDDIQRCFDSGMDAYVPKPVRKEKLLHQIENV 1050 Query: 120 I 120 + Sbjct: 1051 M 1051 >gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V++VED+ +L R + GY + +G + D +++D+ L I GL Sbjct: 5 KRVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLMLPGIDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + + P+I ++A + + + G + Y++KP S+ + +K I Sbjct: 65 EICR--RARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRR 122 >gi|120611195|ref|YP_970873.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589659|gb|ABM33099.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 262 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 3/119 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V+I ED ++ + G + +G AL + + KPD++++D+Q+ + G ++ Sbjct: 34 VLIAEDEPEIAEILAAYLARGGLQTVHAPDGQAALAMHQALKPDLVLLDVQMPRVDGWKV 93 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 +I+ + PVI +TA D+ + G + Y+ KP + + + ++ + + Sbjct: 94 LSEIRHRG---DTPVIMLTAMDQDIDKLMGLRIGADDYVVKPFNAAEVVARVQAVLRRS 149 >gi|116252485|ref|YP_768323.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257133|emb|CAK08228.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 246 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++IV+D+ +L ++ +G +G + + D+I++D+ + GL Sbjct: 6 HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAVDLIVLDVMMPGDDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D + G + Y+ KP + + IK + Sbjct: 66 LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAVLRR 123 >gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQ 57 K+++IVED++ + R+ + GY + G EA K D+I++D+ L Sbjct: 13 KRLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 ++G+E+ +++++++ + P++ V+A + D + G + Y+ KP L+ + + Sbjct: 73 NLNGIELCRRVRKNNI--KTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCR 130 Query: 118 KYIGEA 123 + + Sbjct: 131 AILRRS 136 >gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 863 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 1/114 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N KL +++ GY +G +A+++ ++ D+I+MD+Q+ + G E Sbjct: 610 RVLVVEDNLMNQKLVLQVLKHLGYQGQVADDGRKAIDILQKDTFDIILMDLQMPVMDGYE 669 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 T+ I+ +P+IA+TA A+ ++E K G ++SKP + I+ Sbjct: 670 TTRYIRSKINT-TVPIIAMTAHALPSEKEECLKAGMNDFLSKPFQIEELQLLIR 722 >gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] Length = 249 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++V+D + +L + G+ +G AL AR+ +PD +++D+ L ++ GL Sbjct: 24 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMMLPDMDGLA 83 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I +++ EL ++PV+ +TA D G + Y++KP SL + ++ I + Sbjct: 84 ILGRLRR--ELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRS 141 >gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1050 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 3/122 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +NM R ++ +G+ NG +A+EL R+ + D+I+MD+Q+ + GLE Sbjct: 906 RILLAEDDPVNMFAARRILGKAGHAVTPATNGGQAVELLRESEFDLILMDVQMPVMDGLE 965 Query: 64 ITKQIKEDSEL---QEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 T I+ D+ L IP++A+TA+AM GD E+ G + YI+KP+S E I I Sbjct: 966 ATAMIRGDATLGEKSRIPIVAMTAYAMSGDREKFLAGSMDGYIAKPLSCETLYEIISNVI 1025 Query: 121 GE 122 Sbjct: 1026 AR 1027 >gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +V++VEDN +N DL+E+ G+ + NG ALE H DV++MDIQ+ + GL Sbjct: 982 RVLLVEDNRVNRVFATDLLESRGHEVILAENGRVALEYLVSHAVDVVLMDIQMPVMDGLA 1041 Query: 64 ITKQIKE--DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 T+ I+ +PV+ ++A+AM + ER G + YI+KPI + F + + + Sbjct: 1042 ATRAIRAGHLDIDPGLPVVGLSAYAMDQERERFLAAGFDDYITKPIDVETFFAVVARVLA 1101 Query: 122 E 122 Sbjct: 1102 R 1102 >gi|260589381|ref|ZP_05855294.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] gi|260540462|gb|EEX21031.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] Length = 239 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 1 MLK----KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQL 56 M+K V++VED+ L +E Y NG +A+ LA + PD+I+MD+ L Sbjct: 1 MMKGNKPSVLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAIMLAAANNPDIILMDLGL 60 Query: 57 QEISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 +I G+E+ ++I+ S P+I ++A + + D+ G + Y++KP S++ + Sbjct: 61 PDIDGIEVIRKIRTWSVA---PIIVISARSDEKDKVAALDVGADDYLTKPFSVTELSARL 117 Query: 117 KKYIGE 122 + Sbjct: 118 RATTRR 123 >gi|190573243|ref|YP_001971088.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011165|emb|CAQ44774.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 246 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ ++ D ++ +G Q G L H D++++D+ + GL Sbjct: 6 HILVVDDDSEIRQMLADYLQRNGLRVSQADGGRAMRALMDTHAVDLVVLDVMMPGEDGLS 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ + + +PV+ +TA + D + G + Y++KP S + I I Sbjct: 66 LCRNLRA-GKHRAVPVVLLTARDDETDRIIGLEMGADDYVTKPFSSRELLARINAVIRR 123 >gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 309 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 60/116 (51%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + D +E +G L +G AL L + PD+I+MD + + G E Sbjct: 11 VLVVDDSPETLSFLTDALEAAGATVLIAVDGANALALVERITPDIILMDAVMPGMDGFET 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D + +PVI +TA + + G Y++KPI+L M ++ ++ Sbjct: 71 CRRLKRDKIVTHVPVIFMTALSDTEQIVMGLEAGGVDYVTKPIALDELMARMRVHL 126 >gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 222 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED+ + ++ +GY +G EA D+ ++D+ L ++ GL Sbjct: 2 RILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLPKMDGLA 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + K+ + +++PV+ +TA + G + Y++KP ++ + ++ + A Sbjct: 62 VLKRWRA--AGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRA 119 >gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72] gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72] Length = 235 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEI 59 M ++++IV+D + + T GY G +AL R ++I+D+ L + Sbjct: 1 MSRRILIVDDEPAIADMLAYALRTEGYEPDCVGLGGDALAALRGGADYALVILDVGLPDQ 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 SG ++ + ++ +S ++PVI +TA + + D + G + Y+ KP S ++ Sbjct: 61 SGFDVCRALRRES---DVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAI 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 309 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + + +E SG+ L +G AL +A + PD+I++D + + G + Sbjct: 13 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 72 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++K ++ + ++PV+ +T R + G Y++KPI++ I+ ++ A Sbjct: 73 CARLKANASVAQVPVVFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131 >gi|15595606|ref|NP_249100.1| twitching motility protein PilH [Pseudomonas aeruginosa PAO1] gi|116054140|ref|YP_788583.1| twitching motility protein PilH [Pseudomonas aeruginosa UCBPP-PA14] gi|152987748|ref|YP_001345904.1| twitching motility protein PilH [Pseudomonas aeruginosa PA7] gi|218889151|ref|YP_002438015.1| twitching motility protein PilH [Pseudomonas aeruginosa LESB58] gi|254237356|ref|ZP_04930679.1| twitching motility protein PilH [Pseudomonas aeruginosa C3719] gi|254243508|ref|ZP_04936830.1| twitching motility protein PilH [Pseudomonas aeruginosa 2192] gi|296386908|ref|ZP_06876407.1| twitching motility protein PilH [Pseudomonas aeruginosa PAb1] gi|313111968|ref|ZP_07797757.1| twitching motility protein PilH [Pseudomonas aeruginosa 39016] gi|1172507|sp|P43501|PILH_PSEAE RecName: Full=Protein pilH gi|9946264|gb|AAG03798.1|AE004478_3 twitching motility protein PilH [Pseudomonas aeruginosa PAO1] gi|401795|gb|AAA25950.1| cheY homologue [Pseudomonas aeruginosa PAO1] gi|115589361|gb|ABJ15376.1| type IV pilus response regulator PilH [Pseudomonas aeruginosa UCBPP-PA14] gi|126169287|gb|EAZ54798.1| twitching motility protein PilH [Pseudomonas aeruginosa C3719] gi|126196886|gb|EAZ60949.1| twitching motility protein PilH [Pseudomonas aeruginosa 2192] gi|150962906|gb|ABR84931.1| twitching motility protein PilH [Pseudomonas aeruginosa PA7] gi|218769374|emb|CAW25134.1| twitching motility protein PilH [Pseudomonas aeruginosa LESB58] gi|310884259|gb|EFQ42853.1| twitching motility protein PilH [Pseudomonas aeruginosa 39016] Length = 121 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 70/119 (58%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++IV+D+ M ++E G+ L+ NG + + LARQ KPDV++MDI + ++G Sbjct: 1 MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T+Q+ +D+E IPVI VT + D+ ++ G Y++KP+ ++TI + Sbjct: 61 FQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119 >gi|330996105|ref|ZP_08319998.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573876|gb|EGG55457.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Paraprevotella xylaniphila YIT 11841] Length = 905 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++V+DN + + + + L +G+EA + +H DV+I D+ + + GLE+ Sbjct: 655 LLVDDNADLLDVMHRVF-MCRHKVLLAHDGVEAQSVIEEHAVDVVISDVMMPNMDGLELC 713 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 +++K D IPVI +TA D K GC+ Y++KP L + ++ ++ Sbjct: 714 RRLKSDINTSHIPVILLTAKNAPEDRVECYKAGCDGYVAKPFELRVLEARVENFL 768 >gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3] Length = 1246 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ +DN L+ + Y +G+ AL A + PD+++ D+ + + G Sbjct: 603 ARIVVADDNADMRDYLLALLGGA-YRVEAVDDGLRALAAAHREPPDLVLTDVMMPNLDGF 661 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + ++ ++ +E+PVI ++A A + G + Y+ KP S + I + Sbjct: 662 ALREALRAEAATREVPVIMLSARAGEQARIEAIDAGVDDYLVKPFSARELLARIGAVLER 721 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 4/122 (3%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++V++V+DN+ L+ET G+ + EAL LA +PD +++DI L + G Sbjct: 1125 SRRVLVVDDNQDAANALAALLETDGHQVTVAYSAPEALALAESLRPDAVLLDIGLPGMDG 1184 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ ++++ L+ +IAVT + D E G +A++ KP+++ + ++ + Sbjct: 1185 HEVARRMRASPRLRRAQLIAVTGYGQASDRENSMSAGFDAHLVKPVAVPLL----QRMLR 1240 Query: 122 EA 123 +A Sbjct: 1241 QA 1242 >gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1187 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 61/118 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++++ EDN +N ++ +L+ G NG AL+ + D+++MD+Q+ ++ GL Sbjct: 839 ARLLLAEDNPINREVALELLHGVGLSVDTADNGRVALDKLGTNSYDLVLMDVQMPDMDGL 898 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 TK I+ +P++A+TA A D G +++KP+ + T+ +++ Sbjct: 899 AATKAIRAQPGYASLPILAMTANAFDEDRRICLNAGMNDFVAKPVIPQVLYATLLRWL 956 Score = 76.7 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 4/121 (3%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEA-LELARQHKPDVIIMDIQLQEISGL 62 K++++ED + L + A R G + L+ A Q++ DV++ D + + + Sbjct: 6 KLLVIEDVPADFLLLERHLRQHSLDAECFRVGSDVELDAALQNEWDVVLSDYNVPGMDFI 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++I+ + +P+I V+ + + G ++ K SL + I + + E Sbjct: 66 TTLQRIR--TYRPNLPIILVSGSVGEETAVELLHLGMSDFVLKG-SLIRLLPAILRALNE 122 Query: 123 A 123 A Sbjct: 123 A 123 >gi|297621363|ref|YP_003709500.1| putative two-component response regulator [Waddlia chondrophila WSU 86-1044] gi|297376664|gb|ADI38494.1| putative two-component response regulator [Waddlia chondrophila WSU 86-1044] Length = 135 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK++I ED +N ++ + ++E + NG EALE+ + D I+MD+Q+ E+ G Sbjct: 15 KKILIAEDYFINQEVTQAILELMEFTVDIAENGREALEMYESNAYDAILMDVQMPEMDGF 74 Query: 63 EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + T +I++ + + IP+IA+TA AM GD E+ G + Y+SKPI S E +KKYI Sbjct: 75 QTTAEIRKKEKNGKRIPIIALTANAMSGDREKCLNAGMDDYLSKPIEASKLEEILKKYI 133 >gi|269103004|ref|ZP_06155701.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp. damselae CIP 102761] gi|268162902|gb|EEZ41398.1| hypothetical protein VDA_002430 [Photobacterium damselae subsp. damselae CIP 102761] Length = 615 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 KK+++VED+ N + + ++E +G++ NG EA+E +Q K D ++MD+Q+ E++GL Sbjct: 488 KKILLVEDSISNQLIAKTILEKNGFVVETALNGREAIEQVQQVKVDAVLMDLQMPELNGL 547 Query: 63 EITKQIKEDSE-LQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ +P+IA+TA A D E + G + Y++KPI+ +E ++ ++ Sbjct: 548 EASLAIRRLGGIYTSLPIIAMTANASDKDREECHQAGMDDYLTKPINKQHMLEVLRIWL 606 >gi|168705023|ref|ZP_02737300.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gemmata obscuriglobus UQM 2246] Length = 246 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED + D + SGY + +G L A D++++DI L + Sbjct: 1 MPKARIVVVEDEPAIRRGVSDALRLSGYEVTEAADGATGLREAGAAGVDLVLLDIMLPKR 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 GLE+ +++ + + PV+ +TA + D R K G + Y+ KP S + ++ Sbjct: 61 DGLEVLSELRRTNPTR--PVVLLTARGSEDDRVRGLKMGADDYVVKPFSAKELIARVEAI 118 Query: 120 IGE 122 + Sbjct: 119 LRR 121 >gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED R + + Y NG + L LA D+I++D+ L + G E Sbjct: 2 RILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGFE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ ++ PV+ +TA D+ + G + Y+ KP + + F+ I+ + A Sbjct: 62 VLRRLRAQ---KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRA 118 >gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1172 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK--PDVIIMDIQLQEISGL 62 +++VEDN +N ++ ++++ NG EA+ D+I+MD Q+ + G Sbjct: 1051 ILLVEDNFINQQVVIEMLKKLHCSVQVAENGQEAIHTLEDADKGFDLILMDCQMPIMDGY 1110 Query: 63 EITKQIKED---SELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 E +++I+ + + +P+IA+TA AMKGD E G AY+SKPI L+ ++K+ Sbjct: 1111 EASRKIRNNLHSNYASTLPIIALTANAMKGDREACLSAGMNAYLSKPIILAELKTELQKW 1170 Query: 120 I 120 + Sbjct: 1171 L 1171 Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-----KPDVIIMDIQLQEI 59 V++V+DN + + T +N AL+ R+ K DV ++D L I Sbjct: 904 VLVVDDNPTLSAILGQWLTTQNIQVYHAQNASLALKRLREQQLSSAKIDVALIDTSLPGI 963 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMET 115 +G+E+TK I+ + + ++ VI +T + G +YI+KP+ + Sbjct: 964 NGIELTKAIRSNDQFAKLHVILMTPHDWLETGTASQLSGPVSYIAKPVKPASLGAA 1019 >gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 305 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 62/119 (52%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+D+ + + +E SG+ L +G AL +A + PD+I++D + + G + Sbjct: 11 VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADRITPDIILLDAVMPGMDGFDT 70 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 ++K ++ + ++PV+ +T R + G Y++KPI++ I+ ++ A Sbjct: 71 CTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129 >gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 239 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M +++IVED E+ + + +E GY G LE A + D++++D+ L E+S Sbjct: 1 MQNRILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVMLPELS 60 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 G+E+ ++I++ + +PVI +TA D+ G YI+KP + + ++ + Sbjct: 61 GIEVLRRIRKKNAY--LPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSL 118 Query: 121 G 121 Sbjct: 119 R 119 >gi|114324568|gb|ABI63591.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N KL ++E + NG+EA E ++ + D ++MD+Q+ + G E Sbjct: 1121 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1180 Query: 65 TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T +I+E D+ + PVIA+TA AM GD E+ + Y+SKP+ + ++TI + Sbjct: 1181 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237 >gi|114324566|gb|ABI63590.1| two-component osmosensing histidine kinase [Alternaria longipes] Length = 1330 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N KL ++E + NG+EA E ++ + D ++MD+Q+ + G E Sbjct: 1121 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1180 Query: 65 TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T +I+E D+ + PVIA+TA AM GD E+ + Y+SKP+ + ++TI + Sbjct: 1181 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1237 >gi|73540279|ref|YP_294799.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72117692|gb|AAZ59955.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 243 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++V+D+ L R+ + G+ +G + +P +I++D+ + ++ GL Sbjct: 9 ILVVDDDPELRDLLREYLTQQGFAVSVLHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ ++ +IPVI +TA + + D + G + Y+ KP S + I + Sbjct: 69 LRNLRAKND--DIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRR 124 >gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 224 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + SGYI G++ L LA+ DV+I+D+ L E+ G E Sbjct: 2 RILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + ++ VTA ++ + + G + Y+ KP + ++ + + Sbjct: 62 VLSRLRKTVSTR---IMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRS 118 >gi|302392131|ref|YP_003827951.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] gi|302204208|gb|ADL12886.1| response regulator receiver protein [Acetohalobium arabaticum DSM 5501] Length = 119 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 72/119 (60%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++VEDN+ + + R ++ +GY NG++A+E A + KPD+I++DI++ +++G Sbjct: 1 MNKILVVEDNKNIITVLRICLQNAGYEVKTVSNGVKAVETAFEWKPDLILLDIKIPKMNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + + +K++ P+I ++A A + + ++ G E YI+KPI + I KY+ Sbjct: 61 FLVCETLKDEEVTANTPIIMLSAKAEEENIKKAYNLGAEGYITKPIEPKRLLAEIDKYL 119 >gi|300087153|ref|YP_003757675.1| response regulator receiver protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526886|gb|ADJ25354.1| response regulator receiver protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 124 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 M+KKV+IV+D E L +++ Y L+ +G EAL++AR++ PD+IIMDI + + Sbjct: 1 MVKKVLIVDDQEQIRLLVCGILKDE-YEVLEAGSGEEALQVAREYLPDLIIMDILMPGMD 59 Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 GL QIK + IPV+ +T + + G + YI+KP + + + +++ Sbjct: 60 GLTACSQIKSNPATNNIPVLVLTIIDYELNRRFAESLGADGYITKPFTPEELRKAVSEHL 119 >gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175] gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175] Length = 240 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 68/124 (54%), Gaps = 3/124 (2%) Query: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEI 59 M K+++V+D+ ++L ++ Y ++ +G +ALE + + D+II+DI + + Sbjct: 9 MPMKILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRL 68 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+ + ++++++ ++P++ ++A + D+ + G + Y++KP + + +K Sbjct: 69 DGISVVHEVRKEN--AQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSL 126 Query: 120 IGEA 123 + + Sbjct: 127 LRRS 130 >gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] Length = 224 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 ++ ++I+ED E ++ GY +G + LE A + D+I++D+ L ++G Sbjct: 1 MQHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETALEINYDLILLDLMLPGLNG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 LE+ ++++ + P+I +TA D G + Y+ KP ++ + ++ Sbjct: 61 LEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFR 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|209549644|ref|YP_002281561.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535400|gb|ACI55335.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 246 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 55/119 (46%), Gaps = 1/119 (0%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++V+D+ +L ++ +G +G + + D+I++D+ + GL Sbjct: 6 HILVVDDDREIRELVSGYLQKNGLRTSTAADGRQMRSFLEANAVDLIVLDVMMPGDDGLV 65 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ + IP++ +TA + D + G + Y++KP + + IK + Sbjct: 66 LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAARELLARIKAVLRR 123 >gi|182418450|ref|ZP_02949744.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237666633|ref|ZP_04526618.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377832|gb|EDT75376.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237657832|gb|EEP55387.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 239 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 1 MLK-KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEI 59 M K ++++VED++ L +ET Y +G +A+ A +KPDVII+D+ L +I Sbjct: 1 MNKAQILVVEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAISYKPDVIILDLGLPDI 60 Query: 60 SGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 G+EI +I+ +P+I V+A + D+ G + Y++KP S+ + ++ Sbjct: 61 DGVEIISKIR---TWSNVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVA 117 Query: 120 IGE 122 + Sbjct: 118 LRR 120 >gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + + GY +G E L A + D+I++DI L ++G Sbjct: 2 RLLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLPGMNGYR 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++ + + P++ +TA + DE G + Y++KP S + +K + Sbjct: 62 VCAALRAAGD--DTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRR 118 >gi|317475260|ref|ZP_07934526.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908514|gb|EFV30202.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 1487 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VEDN R + Y ++ +GME + A + PD+II D+ + E G+ +T Sbjct: 1219 LLVEDNAELRIFLRSIFSPE-YRIVEAADGMEGCDKALKLLPDIIISDVMMPEKDGIAMT 1277 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++++ D IP++ +TA + + + G + YI+KP S + +K + Sbjct: 1278 RELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLL 1332 >gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8] gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8] Length = 220 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED D + +GY +G A + DV+++D+ L + GL Sbjct: 2 RILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPVMDGLT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + KQ + Q +PV+ +TA ++ G + Y++KP + + ++ + + Sbjct: 62 VLKQWRA--GGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRS 119 >gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074] gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 6 MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEIT 65 ++VED E ++ G+ G E L+ ++ D++++D+ L + G E+ Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 66 KQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 +Q++ S +PVI VTA + D+ + G + Y++KP S + I+ + Sbjct: 62 RQLRGRS---NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 115 >gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] Length = 231 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K ++IV+D + +E GY ++ G EAL L H+PDVI++D+ L ++ G Sbjct: 6 KTILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGLPDMDGE 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 E+ + + VI ++ A + D+ G Y++KP SL+ I+ + Sbjct: 66 ELLRAL---PMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRR 122 >gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1302 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 65/116 (56%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++I ED +N ++ R ++ G A NG+E L+ R + DVI+MD Q+ + G + Sbjct: 1181 KILIAEDLPINQRVTRLQLKKIGLTADLAENGVEVLDAVRSKRYDVILMDCQMPVMDGYQ 1240 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 TK+++ E +I ++A+TA AM+GD+ER G ++SKP + + + Sbjct: 1241 ATKKLRAVPEHSDIHIVALTANAMEGDKERCFAAGMNDFVSKPTRPDTLLTAFENF 1296 >gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 635 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K++++ED+ + Y NG LELA+ DVI++DI L ++ G+ Sbjct: 2 KILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGIT 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++++ P++ +TA D + G + Y+ KP + + I+ Sbjct: 62 VCRRLRSQQN--HTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRR 118 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 56/113 (49%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +M+++D+ +++ + + G+ + N + + PD++I+D+++ SGL Sbjct: 509 TLMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLN 568 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETI 116 + + +++D +P++ ++ ++ G + Y+ K I++ +E I Sbjct: 569 LCQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELIECI 621 >gi|170690462|ref|ZP_02881629.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] gi|170144897|gb|EDT13058.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M] Length = 1202 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + +++ ED+ N+ +IE G RNG EALE D+I+MDI + E+ G Sbjct: 1081 RTILLAEDDVRNIFALSHVIEPLGAKLQIARNGREALEALENGPEADLILMDIMMPEMDG 1140 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L +I+ + +P+IA+TA AM D R + G + Y+SKPI + + + ++ Sbjct: 1141 LTAMGEIRRNPRFAHLPIIALTAKAMANDRLRCLEAGADDYVSKPIDVDKLVALCRVWLR 1200 Query: 122 E 122 + Sbjct: 1201 Q 1201 Score = 92.1 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 6 MIV--EDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +IV ED+ ++ RDL+ + + N L L R +P +++D+ L + SGL Sbjct: 814 LIVAIEDDLAFAEILRDLVHELDFDFVHASNAASGLALVRDMRPAAVLLDVGLPDRSGLT 873 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 + + +K D + IP+ V+A ++ G Y KP + S I++ Sbjct: 874 VLEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRL 926 Score = 80.6 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 48/94 (51%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+V+++ED+ + R L+++ + EAL+ + D ++ D+ L + +G Sbjct: 935 KRVLVIEDDAPMRESIRALLQSENTEIVAAATLSEALQYLEKSSFDCVVTDLALPDGTGY 994 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRK 96 ++ +++ ++E +PVI T + +EE + Sbjct: 995 DLLERLAANAEHAALPVIVYTGRMLSDEEEHRLR 1028 >gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 229 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 59/118 (50%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V +VED+ ++ +E G+ NG E + Q P++II+DI L G+ I Sbjct: 6 VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGYDGVRI 65 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 K ++++ ++IP+I +TA + + D+ G + YI+KP S + I+ + Sbjct: 66 AKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNR 123 >gi|153807242|ref|ZP_01959910.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185] gi|149130362|gb|EDM21572.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185] Length = 1318 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 3 KKV-----MIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ 57 K++ +IVEDNE ++ + ET Y +G EALE+ ++ P +I+ D+ + Sbjct: 1045 KRIEGAKMLIVEDNESIKQMLAGIFETF-YQVSTASDGEEALEMIQKEMPSIILSDVVMP 1103 Query: 58 EISGLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +SG E+ K+IK D IPV+ +TA K G + YI+KP + ++ + Sbjct: 1104 RMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRCN 1163 Query: 118 KYI 120 + Sbjct: 1164 NLV 1166 >gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 224 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VED + + SGYI G++ L LA+ DV+I+D+ L E+ G E Sbjct: 2 RILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++++ + V+ VTA ++ + + G + Y+ KP + ++ + + Sbjct: 62 VLSRLRKTVSTR---VMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRS 118 >gi|332977318|gb|EGK14106.1| transcriptional regulatory protein CpxR [Psychrobacter sp. 1501(2011)] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 3/121 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + +++ +D+ L + + G +G + L+ + + D+I++DI + ++ G Sbjct: 1 MTHILLGDDDTELSDLLVEYLTNHGIKCDCAYDGEQVLQKLKTNSYDLIVLDIMMPKVDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + +Q+ L + PVI +TA + D + G + YI+KP + + I I Sbjct: 61 LSVLRQL---PTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIK 117 Query: 122 E 122 Sbjct: 118 R 118 >gi|325103582|ref|YP_004273236.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324972430|gb|ADY51414.1| integral membrane sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1328 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++++EDN+ D + Y L NG E L+L H PD++I D+ + + G+ Sbjct: 1080 ILVIEDNKEVRDFVVDTL-KEKYSVLTAENGSEGLKLTLTHMPDIVISDVMMPVMDGIAY 1138 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 + +K D + IPV+ +TA + DE K G +AY++KP ++ T+ + Sbjct: 1139 CRAVKSDERINHIPVVLLTARTGESDELEGLKIGADAYMTKPFTIDKLKYTVSNLV 1194 >gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI] gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++VEDN ++ ++ + NG + L LA Q+ D I++D+ L E+ G E Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPEMDGFE 60 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 + ++I+ E E PV+ +TA D + G + YI KP I+ + + Sbjct: 61 VIQKIR--DEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRS 118 >gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response regulator for mdtABCD and acrD [Ralstonia solanacearum CMR15] Length = 233 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 ++IVED L D + + Y +G A++ R+ P+++++D+ L GLEI Sbjct: 16 ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 75 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 ++++ ++P++ VTA + D + G + YI KP S + IK + Sbjct: 76 CREVRA---FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 130 >gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 236 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 K+++IVED++ +L R + GY + +G L + +++D+ L + GL Sbjct: 5 KRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGL 64 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 EI + + + +P+I +A + + + G + Y++KP S+ + ++ + Sbjct: 65 EICR--RARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRR 122 Query: 123 A 123 + Sbjct: 123 S 123 >gi|228919830|ref|ZP_04083188.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839846|gb|EEM85129.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 896 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQH-KPDVIIMDIQLQEISG 61 K ++IV+D+ N+ ++ ++ + +NG+E L++ + + D+I+MDI + + G Sbjct: 776 KTILIVDDDHRNIFALQNALKKQHANIITAQNGIECLDILKNNTNIDLILMDIMMPNMDG 835 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 E + I+ + L EIP+IA+TA AM D+E+ G YISKP++L + ++ Sbjct: 836 YETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMSVWL 894 >gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] Length = 214 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 8 VEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEITKQ 67 VED++ +L + + T Y + +G+E + + D+I++D+ + ++G E++K Sbjct: 2 VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSKM 61 Query: 68 IKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGEA 123 I+ S +P+I +TA + D+ + G + YI+KP S + + ++ + + Sbjct: 62 IRSQS---NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 114 >gi|239616845|ref|YP_002940167.1| response regulator receiver modulated serine phosphatase [Kosmotoga olearia TBF 19.5.1] gi|239505676|gb|ACR79163.1| response regulator receiver modulated serine phosphatase [Kosmotoga olearia TBF 19.5.1] Length = 381 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 67/120 (55%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 +K+V++++D+ L + +++ +GY ++ NG +L+ A KPD+I++D+ L +I+G Sbjct: 1 MKRVLVIDDDRTVRMLLKVILKKAGYDVVECANGKTSLKKAESFKPDLILLDLMLPDING 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L++ + L+++P+I +T + ++ + G +I+KP + ++ + Sbjct: 61 LQLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLSEEVLLRVRTQLR 120 >gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 810 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 71/119 (59%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 V++VEDN++N + L++ G+IA +G +AL+ + K D+I MD+Q+ I+G E Sbjct: 685 TVLLVEDNQVNRLVATQLLKKLGFIADSAESGFDALDSCLEKKYDIIFMDLQMPGINGFE 744 Query: 64 ITKQIKE-DSELQEIP-VIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++I+ + P +IA+TA +M+GD E+ + G + YI+KPI E++ + + Sbjct: 745 TVERIRARNPNTAPQPWIIALTADSMQGDREKCLEAGMDDYIAKPIRPENLQESLDRAL 803 Score = 48.6 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 K++++++D D++ G A + +L +Q D I+D L+ G Sbjct: 542 KRILLIQDEGAAYDALTDMLLAIGLQATRASQSEHIFQLLQQEPEFDCAIIDKTLKTEDG 601 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKG--DEERIRKGGCEAY-ISKPISLSIFMETIKK 118 + ++IK + IP I + E +Y I+KP S + + K Sbjct: 602 ARLARRIKLEFTRYRIPFIGLCPIGEPEGGSREDRL----FSYRITKPFSPAGLKLALHK 657 Query: 119 YI 120 I Sbjct: 658 AI 659 >gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K] gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K] Length = 1843 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHK-PDVIIMDIQLQEISG 61 + V++ +D+ N+ ++ET+ + +NG EALE+ D+++MD + E+ G Sbjct: 1709 RTVLLADDDMRNLFAIHSVLETAHVKVIHAQNGREALEVLEASPQVDLVLMDTMMPEMDG 1768 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + I+ + + +P++++TA AMKGD + G Y++KP+ + I +++ Sbjct: 1769 LTAIRAIRAQARYRALPIVSLTAKAMKGDRDDALAAGATDYVAKPVDPQRLLSVIGRWLA 1828 Query: 122 E 122 E Sbjct: 1829 E 1829 >gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1410 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 ++++ ED+ +N K+ +++ GY A NG+E LE R+ DVI+MD+Q+ E+ GLE Sbjct: 1128 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALRRQTYDVILMDMQMPEMDGLE 1187 Query: 64 ITKQI------KEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIK 117 +QI +E + +IAVTA AM+ D G + YISKPI + + +K Sbjct: 1188 AARQIKKLYGDREQDMSERPRIIAVTANAMESDRNDCIAAGMDDYISKPIRMEQLVSVLK 1247 Query: 118 K 118 + Sbjct: 1248 Q 1248 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKP-DVIIMDIQLQEISG 61 K+++IV++N N ++ + G +A NG+EAL + RQ +P D+ ++++Q+ + G Sbjct: 980 KRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQGEPFDMALLEMQMPDFDG 1039 Query: 62 LEITKQIKEDSELQEIPVIAVTAFA-MKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 L + K+I++ S + +P++ +T+ D ++ A ++KPI S + + Sbjct: 1040 LSLAKEIRKLSPYKRVPLVLLTSMGRQSIDRAQLYD--FSACLNKPIKQSQLYNVLMNIL 1097 Query: 121 G 121 G Sbjct: 1098 G 1098 >gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator [Bordetella avium 197N] gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator [Bordetella avium 197N] Length = 223 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 +++IVED + SGY R+G A D++++D+ L + G E Sbjct: 2 RILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVMLPGMDGWE 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I+ PV+ ++A D + + G + Y+ KP S + + ++ + Sbjct: 62 VLRVIRRR---ASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRR 117 >gi|51832271|gb|AAU10319.1| two-component histidine kinase [Alternaria brassicicola] Length = 1328 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 +++ EDN +N KL ++E + NG+EA E ++ + D ++MD+Q+ + G E Sbjct: 1120 ILLAEDNAVNQKLAVRILEKYHHRVTVANNGLEAFEHIQKKRYDCVLMDVQMPVMGGFEA 1179 Query: 65 TKQIKE---DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKK 118 T +I+E D+ + PVIA+TA AM GD E+ + Y+SKP+ + ++TI + Sbjct: 1180 TAKIREWERDNGIPSTPVIALTAHAMVGDREKCLAAQMDDYLSKPLRQNQLIQTILR 1236 >gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1296 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLEI 64 V++V+DN +L++ Y + +G+EAL + PD+++ D+ + + G + Sbjct: 657 VLVVDDNADMRAYIANLLKAH-YEVVLAGDGVEALAAVERRMPDLVLTDVMMPRLDGFGL 715 Query: 65 TKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120 ++ D + +PVI ++A A + + G + Y+SKP + + +K + Sbjct: 716 LAALRTDERTRALPVIVLSARAGEEATLAGLERGADDYLSKPFAARELLGRVKANL 771 >gi|320322881|gb|EFW78972.1| sensory box protein/response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 705 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 55/119 (46%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 ++I++D+ L L++ GY L +G L + PD+I++DI + + G Sbjct: 6 ATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMPGMDGY 65 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 E+ Q+K IP+I ++A + + G E Y++KP+ + ++ + Sbjct: 66 EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGTEEYLNKPVDSAELWLRVRNLLR 124 >gi|310643413|ref|YP_003948171.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309248363|gb|ADO57930.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 236 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 2 LKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61 + K+++V+D+ ++L + ++ Y +G +E R ++PD +++DI + I G Sbjct: 1 MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMPGIDG 60 Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIG 121 L + Q++E E+P+I ++A + D + GC +++KP + + +K + Sbjct: 61 LSLLTQLRE---FTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLR 117 >gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 237 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGL 62 +V+ VED+++ + + +E G+ +G++ LE R PD+ ++D+ + + G+ Sbjct: 11 ARVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMVPGMDGV 70 Query: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + ++I+++S +PVI ++A A D + G + Y++KP +S+ + ++ + Sbjct: 71 SLCRRIRDES---TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127 >gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 227 Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Query: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63 K+++VED + + +G++ R+G + + A D++I+D+ L I G Sbjct: 2 KILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLPGIDGWS 61 Query: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYIGE 122 + + I++ +++PV+ +TA D R + G + Y+ KP + S + ++ + Sbjct: 62 VLRGIRKSG--KDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRR 118 >gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family [Hir