RPSBLAST alignment for GI: 254780476 and conserved domain: TIGR03787
>gnl|CDD|163499 TIGR03787, marine_sort_RR, proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. Length = 227
Score = 42.0 bits (99), Expect = 4e-05
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 3 KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EIS- 60
K++ IVED + + D ++ GY + A++ RQ PD+ I+DI L EI
Sbjct: 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDG 60
Query: 61 GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109
G + + ++ S +P+I +TA D + G + Y++K ISL
Sbjct: 61 GFMLCQDLRSLS--ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISL 107