RPSBLAST alignment for GI: 254780476 and conserved domain: TIGR03787

>gnl|CDD|163499 TIGR03787, marine_sort_RR, proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. Length = 227
 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 3   KKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQ-EIS- 60
           K++ IVED     + + D ++  GY      +   A++  RQ  PD+ I+DI L  EI  
Sbjct: 1   KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDG 60

Query: 61  GLEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109
           G  + + ++  S    +P+I +TA     D     + G + Y++K ISL
Sbjct: 61  GFMLCQDLRSLS--ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISL 107