RPSBLAST alignment of GI: 254780476 and protein with PDBid: 1ny5

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A* Length = 387

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 4   KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
            V+++ED+++   L  + +   G        G EA +L  +   +V+++D+ L +++GLE
Sbjct: 2   NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLE 61

Query: 64  ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119
           I K IKE S   E  VI +T            K G   +++KP  L     TI K 
Sbjct: 62  ILKWIKERS--PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKA 115