RPSBLAST alignment of GI: 254780476 and protein with PDBid: 3cnb
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Length = 143
Score = 88.5 bits (219), Expect = 4e-19
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KVMIVEDNELNMKLFRDLIET--SGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISG 61
++I+ED++ + +E N +A +L KPDV+++D+ + + G
Sbjct: 10 SILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDG 69
Query: 62 LEITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKYI 120
I +IK I VIA+T + RI G E KP++ ++ +TIK+ +
Sbjct: 70 FSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLV 128