HHsearch alignment for GI: 254780477 and conserved domain: cd02950
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.00 E-value=5.4e-05 Score=51.55 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=59.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211344320000203799843323430245777666666665321245588888865433
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDD 145 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~ 145 (232)
T Consensus 21 KPvlVdFyA~WC~~Ck~maP~le~l-~~~Y~dkv~fv~vNVDn------------------------------------- 62 (142)
T cd02950 21 KPTLVEFYADWCTVCQEMAPDVAKL-KQKYGDQVNFVMLNVDN------------------------------------- 62 (142)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHH-HHHHCCCCEEEEEECCC-------------------------------------
T ss_conf 9789999899897788773899999-99958921499997888-------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE---CCEE---ECCCCCHHHHH
Q ss_conf 21134568998764311000068898640598999999999999998618853657998---9899---61899999999
Q gi|254780477|r 146 WINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI---GGNL---YLGDMSEGVFS 219 (232)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V---nG~~---~~g~~~~~~~~ 219 (232)
T Consensus 63 -------------------------------~~-------w~~~-~~~y~V~giPt~~~fd~~G~~~~~~iG~~pe~~l~ 103 (142)
T cd02950 63 -------------------------------PK-------WLPE-IDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLA 103 (142)
T ss_pred -------------------------------CC-------CHHH-HHHHCCCCCCEEEEECCCCCEEEEECCCCCHHHHH
T ss_conf -------------------------------70-------5679-99819788876999868996910353769889999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999986
Q gi|254780477|r 220 KIIDSMIQDS 229 (232)
Q Consensus 220 ~~id~ll~~~ 229 (232)
T Consensus 104 ~~l~aL~~~~ 113 (142)
T cd02950 104 QNLDALVAGE 113 (142)
T ss_pred HHHHHHHCCC
T ss_conf 9999998289