HHsearch alignment for GI: 254780477 and conserved domain: cd03022
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=99.40 E-value=1.8e-11 Score=92.46 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=98.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CC---C-------CHHHH---------------------
Q ss_conf 9997058882064433421134432000020379984332-34---3-------02457---------------------
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREF-PL---D-------SVSTV--------------------- 116 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~-------~~~~~--------------------- 116 (232)
T Consensus 1 Id~y~D~~cP~cylg~~~l~~~~~~~~~~---i~~~Pf~L~~~~~~~g~~~~~~~~~~k~~~~~~d~~r~a~~~gl~~~~ 77 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGAT---VRYRPILLGGVFKATGNVPPANRPPAKGRYRLRDLERWARRYGIPLRF 77 (192)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCE---EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98998389879999999999999975986---999988736644445786511015899999999999999985367888
Q ss_pred --------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf --------776666666-65321245588888865433211345689987643110000688986405989999999999
Q gi|254780477|r 117 --------AVMLARCAE-KRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGK 187 (232)
Q Consensus 117 --------~~a~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 187 (232)
T Consensus 78 ~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~~lf~a~f~~g~di~d~~vL~~ia~~~Gld~~~~~~~~~~~~~~~~l~~~~ 157 (192)
T cd03022 78 PPRFPPNTLRAMRAALAAQAEGDAAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPAVKAALRANT 157 (192)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 88888871889999999998674599999999999862997879899999999983999999998752668999999999
Q ss_pred HHHHHHCCCCCCCEEEECCEEECCCCCHHHHHH
Q ss_conf 999986188536579989899618999999999
Q gi|254780477|r 188 KRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSK 220 (232)
Q Consensus 188 ~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~~ 220 (232)
T Consensus 158 ~~A~-~~Gi~GvPtfvi~~e~f~G~Drl~~l~~ 189 (192)
T cd03022 158 EEAI-ARGVFGVPTFVVDGEMFWGQDRLDMLEE 189 (192)
T ss_pred HHHH-HCCCEECCEEEECCEEEEEHHHHHHHHH
T ss_conf 9999-8799477789999998750520999999