Query gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs 133 out of 3299
Neff 10.1
Searched_HMMs 39220
Date Sun May 29 17:04:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780477.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03023 DsbA_Com1_like DsbA fa 100.0 1.9E-30 4.8E-35 212.4 16.1 153 61-223 1-154 (154)
2 cd03019 DsbA_DsbA DsbA family, 100.0 2.2E-27 5.7E-32 193.0 17.2 164 63-231 13-178 (178)
3 PRK10954 periplasmic protein d 99.9 1.4E-21 3.6E-26 156.4 17.7 159 66-229 38-207 (207)
4 COG1651 DsbG Protein-disulfide 99.9 8.5E-22 2.2E-26 157.8 14.7 169 52-226 71-243 (244)
5 pfam01323 DSBA DSBA-like thior 99.7 7.5E-17 1.9E-21 126.5 14.6 150 68-222 1-190 (191)
6 COG2761 FrnE Predicted dithiol 99.7 8.8E-16 2.3E-20 119.7 16.3 166 64-231 3-218 (225)
7 cd03024 DsbA_FrnE DsbA family, 99.7 3.5E-16 8.9E-21 122.3 14.0 153 69-223 1-201 (201)
8 cd03020 DsbA_DsbC_DsbG DsbA fa 99.6 6E-15 1.5E-19 114.5 8.5 129 56-222 68-197 (197)
9 PRK10877 thiol:disulfide inter 99.5 2E-13 5.2E-18 104.8 10.3 128 59-225 101-230 (232)
10 PRK11657 dsbG disulfide isomer 99.5 9.5E-13 2.4E-17 100.6 11.1 134 58-222 112-250 (253)
11 cd03025 DsbA_FrnE_like DsbA fa 99.4 3.1E-12 7.8E-17 97.4 12.8 148 67-216 1-192 (193)
12 cd03022 DsbA_HCCA_Iso DsbA fam 99.4 1.8E-11 4.7E-16 92.5 14.1 148 69-220 1-189 (192)
13 cd02972 DsbA_family DsbA famil 99.4 4.5E-12 1.1E-16 96.3 9.2 95 69-212 1-97 (98)
14 COG3917 NahD 2-hydroxychromene 98.8 2.9E-07 7.3E-12 66.0 14.4 153 64-218 5-196 (203)
15 cd03021 DsbA_GSTK DsbA family, 98.6 2.7E-06 7E-11 59.7 12.8 137 68-206 2-187 (209)
16 PRK03147 thiol-disulfide oxido 98.5 1.2E-06 3.1E-11 62.0 9.2 116 58-229 55-176 (176)
17 COG3531 Predicted protein-disu 98.4 1.9E-05 4.8E-10 54.5 13.3 95 133-227 108-210 (212)
18 cd02956 ybbN ybbN protein fami 98.0 2.5E-05 6.3E-10 53.7 7.7 83 61-223 9-96 (96)
19 cd02951 SoxW SoxW family; SoxW 98.0 6.6E-05 1.7E-09 51.0 9.4 44 189-232 75-125 (125)
20 cd02950 TxlA TRX-like protein 98.0 5.4E-05 1.4E-09 51.5 8.8 87 66-229 21-113 (142)
21 PRK10996 thioredoxin 2; Provis 97.9 7E-05 1.8E-09 50.9 8.5 36 191-226 99-139 (139)
22 cd02949 TRX_NTR TRX domain, no 97.9 6E-05 1.5E-09 51.3 7.6 79 66-223 14-97 (97)
23 PRK09381 trxA thioredoxin; Pro 97.9 0.00016 4E-09 48.6 9.2 37 191-227 68-109 (109)
24 pfam00085 Thioredoxin Thioredo 97.7 9.6E-05 2.4E-09 50.0 5.8 34 191-224 65-103 (104)
25 COG2143 Thioredoxin-related pr 97.7 0.00054 1.4E-08 45.3 9.5 42 187-228 104-151 (182)
26 cd03000 PDI_a_TMX3 PDIa family 97.5 0.00037 9.5E-09 46.3 6.8 35 191-225 65-103 (104)
27 cd02947 TRX_family TRX family; 97.4 0.00041 1.1E-08 46.0 5.7 34 190-223 55-93 (93)
28 cd02994 PDI_a_TMX PDIa family, 97.3 0.00089 2.3E-08 43.9 6.8 35 190-224 63-101 (101)
29 cd02997 PDI_a_PDIR PDIa family 97.2 0.002 5.1E-08 41.7 7.3 32 191-222 68-104 (104)
30 cd02953 DsbDgamma DsbD gamma f 97.1 0.0024 6E-08 41.2 7.1 34 190-223 64-104 (104)
31 KOG0910 consensus 97.1 0.005 1.3E-07 39.1 8.5 88 61-228 58-150 (150)
32 TIGR00411 redox_disulf_1 redox 97.0 0.00048 1.2E-08 45.6 2.9 37 188-225 44-81 (82)
33 cd02969 PRX_like1 Peroxiredoxi 97.0 0.0032 8.1E-08 40.4 7.1 38 58-95 17-55 (171)
34 PTZ00102 disulphide isomerase; 96.9 0.0036 9.1E-08 40.1 6.6 30 65-94 50-79 (479)
35 cd02996 PDI_a_ERp44 PDIa famil 96.8 0.0017 4.4E-08 42.0 4.3 33 190-222 70-108 (108)
36 cd02961 PDI_a_family Protein D 96.8 0.0052 1.3E-07 39.0 6.6 33 190-222 63-101 (101)
37 cd03001 PDI_a_P5 PDIa family, 96.6 0.007 1.8E-07 38.2 6.3 31 191-221 65-101 (103)
38 KOG3160 consensus 96.6 0.046 1.2E-06 33.0 10.1 157 61-229 35-209 (220)
39 cd02998 PDI_a_ERp38 PDIa famil 96.5 0.0061 1.6E-07 38.6 5.4 32 191-222 68-105 (105)
40 cd02963 TRX_DnaJ TRX domain, D 96.5 0.019 4.9E-07 35.4 7.7 35 191-225 72-111 (111)
41 PTZ00051 thioredoxin; Provisio 96.4 0.0093 2.4E-07 37.4 6.0 28 66-93 19-46 (98)
42 TIGR01126 pdi_dom protein disu 96.4 0.0026 6.6E-08 41.0 2.7 35 190-224 64-105 (107)
43 cd02995 PDI_a_PDI_a'_C PDIa fa 96.2 0.0025 6.4E-08 41.0 1.8 31 192-222 67-104 (104)
44 cd03009 TryX_like_TryX_NRX Try 96.0 0.027 7E-07 34.5 6.4 48 60-107 13-60 (131)
45 cd03012 TlpA_like_DipZ_like Tl 95.9 0.016 4E-07 36.0 5.0 39 58-96 16-54 (126)
46 cd02966 TlpA_like_family TlpA- 95.9 0.0075 1.9E-07 38.0 3.0 31 64-94 18-48 (116)
47 cd02964 TryX_like_family Trypa 95.8 0.054 1.4E-06 32.6 7.3 48 59-106 11-58 (132)
48 TIGR01130 ER_PDI_fam protein d 95.7 0.0088 2.3E-07 37.6 3.0 25 65-89 18-42 (522)
49 cd02993 PDI_a_APS_reductase PD 95.6 0.018 4.5E-07 35.7 4.1 34 58-91 14-47 (109)
50 COG3118 Thioredoxin domain-con 95.5 0.094 2.4E-06 31.1 7.6 29 65-94 44-72 (304)
51 PRK13728 conjugal transfer pro 95.5 0.05 1.3E-06 32.8 6.1 28 67-94 71-98 (181)
52 TIGR01130 ER_PDI_fam protein d 95.1 0.014 3.5E-07 36.4 2.2 47 63-110 382-430 (522)
53 COG0695 GrxC Glutaredoxin and 94.9 0.067 1.7E-06 32.0 5.4 27 195-221 50-76 (80)
54 KOG1731 consensus 94.9 0.0095 2.4E-07 37.4 1.0 44 48-93 42-85 (606)
55 cd03011 TlpA_like_ScsD_MtbDsbE 94.9 0.04 1E-06 33.4 4.1 29 62-90 17-45 (123)
56 cd02992 PDI_a_QSOX PDIa family 94.9 0.032 8.2E-07 34.0 3.6 25 66-90 20-44 (114)
57 cd03008 TryX_like_RdCVF Trypar 94.8 0.23 5.9E-06 28.6 7.8 32 62-93 22-53 (146)
58 cd03010 TlpA_like_DsbE TlpA-li 93.8 0.15 3.9E-06 29.8 5.2 27 64-90 24-50 (127)
59 TIGR01068 thioredoxin thioredo 93.7 0.087 2.2E-06 31.3 3.8 36 191-226 61-101 (101)
60 cd03004 PDI_a_ERdj5_C PDIa fam 93.6 0.098 2.5E-06 31.0 3.9 33 190-222 65-104 (104)
61 cd03003 PDI_a_ERdj5_N PDIa fam 93.5 0.1 2.5E-06 30.9 3.8 32 190-221 64-100 (101)
62 cd03005 PDI_a_ERp46 PDIa famil 93.4 0.088 2.2E-06 31.3 3.4 32 191-222 66-102 (102)
63 cd02999 PDI_a_ERp44_like PDIa 93.3 0.077 2E-06 31.6 3.1 31 191-221 65-99 (100)
64 cd03002 PDI_a_MPD1_like PDI fa 93.0 0.15 3.7E-06 29.9 4.1 32 191-222 67-108 (109)
65 PTZ00102 disulphide isomerase; 92.9 0.12 3E-06 30.4 3.5 12 193-204 299-310 (479)
66 cd03026 AhpF_NTD_C TRX-GRX-lik 92.4 0.19 4.8E-06 29.2 4.0 31 189-219 56-87 (89)
67 KOG0190 consensus 92.4 0.13 3.3E-06 30.2 3.1 27 64-90 41-67 (493)
68 TIGR02187 GlrX_arch Glutaredox 92.4 0.11 2.8E-06 30.7 2.7 37 187-223 194-235 (237)
69 cd02984 TRX_PICOT TRX domain, 92.3 0.18 4.5E-06 29.4 3.7 33 190-223 60-97 (97)
70 cd02967 mauD Methylamine utili 92.1 0.27 6.9E-06 28.2 4.4 37 57-93 12-49 (114)
71 cd02948 TRX_NDPK TRX domain, T 92.0 0.25 6.3E-06 28.4 4.2 33 192-225 65-102 (102)
72 TIGR02738 TrbB type-F conjugat 91.9 0.093 2.4E-06 31.1 1.9 28 66-93 72-99 (176)
73 cd02985 TRX_CDSP32 TRX family, 91.1 0.48 1.2E-05 26.6 4.8 31 63-93 13-43 (103)
74 TIGR03140 AhpF alkyl hydropero 90.5 0.48 1.2E-05 26.6 4.4 37 188-224 160-197 (515)
75 cd02973 TRX_GRX_like Thioredox 90.4 0.3 7.6E-06 27.9 3.2 19 191-209 45-63 (67)
76 cd02976 NrdH NrdH-redoxin (Nrd 90.3 0.6 1.5E-05 26.0 4.8 30 192-222 44-73 (73)
77 TIGR00411 redox_disulf_1 redox 90.1 0.19 4.8E-06 29.2 2.1 29 67-95 1-29 (82)
78 TIGR02196 GlrX_YruB Glutaredox 89.4 0.48 1.2E-05 26.6 3.7 35 188-223 40-79 (79)
79 cd01659 TRX_superfamily Thiore 88.4 0.75 1.9E-05 25.4 4.1 22 69-90 1-22 (69)
80 cd02984 TRX_PICOT TRX domain, 88.4 0.67 1.7E-05 25.7 3.9 38 66-106 15-52 (97)
81 pfam06053 DUF929 Domain of unk 88.3 0.62 1.6E-05 25.9 3.6 32 64-95 57-88 (249)
82 TIGR03143 AhpF_homolog putativ 88.2 0.8 2E-05 25.2 4.2 158 58-222 359-554 (555)
83 PRK10638 glutaredoxin 3; Provi 88.1 0.63 1.6E-05 25.9 3.6 26 192-217 46-71 (83)
84 PHA02125 thioredoxin-like prot 88.1 0.48 1.2E-05 26.6 2.9 19 191-210 39-57 (75)
85 cd03005 PDI_a_ERp46 PDIa famil 87.9 0.71 1.8E-05 25.5 3.7 36 68-103 19-54 (102)
86 PRK12759 bifunctional gluaredo 87.5 1.8 4.5E-05 23.0 5.6 17 68-84 3-19 (410)
87 cd02962 TMX2 TMX2 family; comp 87.2 1.1 2.7E-05 24.4 4.3 29 66-94 48-76 (152)
88 cd03006 PDI_a_EFP1_N PDIa fami 86.4 1 2.6E-05 24.5 3.9 31 63-93 27-57 (113)
89 TIGR00385 dsbE periplasmic pro 86.4 2.5 6.5E-05 22.0 5.9 106 65-228 64-175 (175)
90 TIGR02661 MauD methylamine deh 85.2 3 7.7E-05 21.6 6.4 35 58-92 65-101 (189)
91 TIGR02190 GlrX-dom Glutaredoxi 84.1 0.99 2.5E-05 24.6 2.9 27 65-95 6-32 (79)
92 cd03027 GRX_DEP Glutaredoxin ( 84.0 2.5 6.4E-05 22.1 4.9 27 192-221 45-71 (73)
93 PRK11509 hydrogenase-1 operon 82.7 3.9 9.9E-05 20.9 5.5 42 190-231 83-129 (132)
94 cd02989 Phd_like_TxnDC9 Phosdu 82.5 2.4 6E-05 22.2 4.3 25 66-90 23-47 (113)
95 pfam00578 AhpC-TSA AhpC/TSA fa 81.8 1.7 4.4E-05 23.1 3.4 30 65-94 25-55 (124)
96 TIGR02181 GRX_bact glutaredoxi 81.4 0.6 1.5E-05 26.0 0.9 25 194-221 48-72 (82)
97 PRK11200 grxA glutaredoxin 1; 81.2 4.3 0.00011 20.6 5.2 27 195-224 55-81 (87)
98 cd02975 PfPDO_like_N Pyrococcu 80.8 3.7 9.6E-05 21.0 4.8 38 190-227 67-111 (113)
99 KOG4277 consensus 79.8 1.3 3.3E-05 23.9 2.2 29 58-86 36-64 (468)
100 COG5494 Predicted thioredoxin/ 79.3 2.2 5.7E-05 22.4 3.3 20 67-86 11-30 (265)
101 KOG1752 consensus 78.4 4.3 0.00011 20.6 4.5 36 194-229 63-100 (104)
102 pfam08534 Redoxin Redoxin. Thi 78.1 3.2 8.1E-05 21.4 3.8 30 65-94 27-57 (142)
103 pfam01216 Calsequestrin Calseq 78.1 5.3 0.00014 20.0 4.9 22 65-87 28-49 (350)
104 KOG0191 consensus 78.0 2.2 5.6E-05 22.4 2.9 33 60-93 43-75 (383)
105 COG3019 Predicted metal-bindin 76.8 5.4 0.00014 20.0 4.6 29 196-224 74-102 (149)
106 KOG0907 consensus 76.1 3.8 9.6E-05 21.0 3.7 34 190-224 66-104 (106)
107 PRK00293 dipZ thiol:disulfide 74.8 6.6 0.00017 19.4 4.6 37 189-225 531-575 (577)
108 TIGR00412 redox_disulf_2 redox 74.6 3 7.8E-05 21.5 2.9 59 152-223 17-77 (78)
109 pfam06764 DUF1223 Protein of u 74.2 7 0.00018 19.3 5.1 35 193-227 63-99 (199)
110 cd02957 Phd_like Phosducin (Ph 73.2 4 0.0001 20.8 3.2 27 67-93 26-52 (113)
111 PRK13669 hypothetical protein; 71.9 7.4 0.00019 19.1 4.3 33 196-229 43-75 (78)
112 pfam07511 DUF1525 Protein of u 71.6 8 0.0002 18.9 5.4 35 189-224 75-110 (114)
113 KOG0908 consensus 71.3 7 0.00018 19.3 4.1 33 62-94 18-50 (288)
114 COG3634 AhpF Alkyl hydroperoxi 70.3 4.5 0.00012 20.4 2.9 23 62-84 113-135 (520)
115 cd03029 GRX_hybridPRX5 Glutare 69.3 5.2 0.00013 20.1 3.0 24 194-220 46-69 (72)
116 COG0526 TrxA Thiol-disulfide i 68.8 5.1 0.00013 20.1 2.9 30 65-94 32-61 (127)
117 cd02066 GRX_family Glutaredoxi 68.6 6.3 0.00016 19.6 3.4 26 193-221 45-70 (72)
118 cd02970 PRX_like2 Peroxiredoxi 67.8 8.9 0.00023 18.6 4.0 31 64-94 23-53 (149)
119 cd02965 HyaE HyaE family; HyaE 67.7 9.7 0.00025 18.4 4.2 31 190-220 75-110 (111)
120 pfam04214 DUF411 Protein of un 66.9 10 0.00026 18.3 4.5 30 195-224 22-51 (70)
121 TIGR02183 GRXA Glutaredoxin, G 66.8 4.1 0.0001 20.7 2.1 28 69-97 2-29 (86)
122 pfam07293 DUF1450 Protein of u 66.3 10 0.00026 18.2 4.2 33 196-229 43-75 (78)
123 PRK13703 conjugal pilus assemb 66.3 5 0.00013 20.2 2.5 32 191-222 198-236 (247)
124 PRK11063 metQ DL-methionine tr 66.2 4.3 0.00011 20.6 2.1 22 64-85 58-79 (271)
125 cd03418 GRX_GRXb_1_3_like Glut 65.7 8.6 0.00022 18.7 3.6 26 194-222 47-72 (75)
126 KOG2501 consensus 65.4 11 0.00027 18.1 4.3 32 63-94 31-62 (157)
127 TIGR02495 NrdG2 anaerobic ribo 65.4 3.9 9.9E-05 20.9 1.8 17 66-82 16-35 (220)
128 cd03419 GRX_GRXh_1_2_like Glut 65.1 11 0.00027 18.1 4.0 27 193-222 48-74 (82)
129 COG1464 NlpA ABC-type metal io 64.3 6.6 0.00017 19.4 2.8 22 64-85 56-77 (268)
130 PRK02244 DNA-directed RNA poly 63.8 3 7.7E-05 21.6 1.0 18 65-82 10-27 (44)
131 TIGR02049 gshA_ferroox glutama 63.2 12 0.0003 17.8 4.2 42 180-221 244-291 (436)
132 cd03081 TRX_Fd_NuoE_FDH_gamma 62.8 8.9 0.00023 18.6 3.2 29 196-225 52-80 (80)
133 TIGR01295 PedC_BrcD bacterioci 62.7 3 7.5E-05 21.6 0.8 26 69-94 27-52 (122)
134 cd02958 UAS UAS family; UAS is 62.7 12 0.00031 17.8 6.4 38 191-228 69-113 (114)
135 cd03064 TRX_Fd_NuoE TRX-like [ 62.3 9.9 0.00025 18.3 3.4 27 198-225 54-80 (80)
136 TIGR02200 GlrX_actino Glutared 61.9 4.2 0.00011 20.7 1.4 19 69-87 2-20 (78)
137 TIGR02180 GRX_euk Glutaredoxin 61.8 9.9 0.00025 18.3 3.3 28 192-219 49-76 (85)
138 pfam00462 Glutaredoxin Glutare 61.2 11 0.00027 18.1 3.4 17 193-209 44-60 (60)
139 cd02959 ERp19 Endoplasmic reti 61.0 6.5 0.00017 19.5 2.3 25 64-89 19-43 (117)
140 pfam06953 ArsD Arsenical resis 59.6 14 0.00035 17.4 6.1 64 158-223 34-99 (119)
141 KOG3425 consensus 56.4 10 0.00026 18.3 2.6 24 74-97 42-65 (128)
142 PRK07539 NADH dehydrogenase su 55.9 16 0.0004 17.0 3.9 27 198-225 127-153 (154)
143 cd03083 TRX_Fd_NuoE_hoxF TRX-l 53.6 17 0.00043 16.8 3.4 29 196-225 52-80 (80)
144 TIGR02652 TIGR02652 conserved 53.3 4.5 0.00012 20.5 0.4 14 74-87 10-23 (172)
145 COG1905 NuoE NADH:ubiquinone o 51.6 16 0.0004 17.0 2.9 94 130-228 22-159 (160)
146 TIGR01355 cyt_deam_dimer cytid 51.3 8.2 0.00021 18.8 1.5 20 71-90 103-122 (311)
147 cd03031 GRX_GRX_like Glutaredo 51.1 17 0.00044 16.8 3.1 70 155-228 21-92 (147)
148 pfam05605 Di19 Drought induced 50.5 4.9 0.00012 20.3 0.2 15 71-85 31-45 (210)
149 KOG3286 consensus 49.5 20 0.00051 16.4 8.7 134 68-231 71-217 (226)
150 PRK09027 cytidine deaminase; P 49.1 13 0.00034 17.5 2.2 25 65-89 117-141 (295)
151 pfam03227 GILT Gamma interfero 47.4 21 0.00054 16.2 3.4 41 67-107 1-43 (109)
152 PRK09861 cytoplasmic membrane 46.6 21 0.00054 16.2 3.0 22 64-85 59-80 (272)
153 pfam06110 DUF953 Eukaryotic pr 45.1 18 0.00045 16.7 2.4 24 73-96 34-57 (119)
154 cd03028 GRX_PICOT_like Glutare 44.9 23 0.0006 15.9 4.4 28 192-222 57-84 (90)
155 TIGR03103 trio_acet_GNAT GNAT- 43.4 24 0.00061 15.9 2.8 13 192-204 208-220 (547)
156 PRK05654 acetyl-CoA carboxylas 43.1 25 0.00063 15.8 4.4 53 169-225 134-190 (288)
157 pfam09654 DUF2396 Protein of u 42.8 7.9 0.0002 18.9 0.3 14 74-87 6-19 (161)
158 COG5429 Uncharacterized secret 42.7 25 0.00064 15.7 8.6 39 64-106 40-78 (261)
159 pfam01257 Complex1_24kDa Respi 42.6 25 0.00065 15.7 3.8 27 198-225 118-144 (145)
160 cd02952 TRP14_like Human TRX-r 42.5 20 0.00052 16.3 2.4 23 74-96 37-59 (119)
161 PRK05988 formate dehydrogenase 42.3 26 0.00065 15.7 4.0 27 198-225 128-154 (156)
162 cd02971 PRX_family Peroxiredox 40.6 27 0.00069 15.5 3.9 29 66-94 23-52 (140)
163 TIGR01926 peroxid_rel uncharac 39.2 27 0.0007 15.5 2.6 20 76-95 79-98 (179)
164 pfam11287 DUF3088 Protein of u 38.8 17 0.00044 16.8 1.5 33 75-111 21-53 (111)
165 KOG2703 consensus 38.6 10 0.00026 18.2 0.3 126 69-207 63-190 (460)
166 cd03018 PRX_AhpE_like Peroxire 38.0 30 0.00076 15.3 3.8 29 66-94 30-58 (149)
167 TIGR02740 TraF-like TraF-like 37.8 26 0.00066 15.7 2.3 73 149-222 182-294 (306)
168 PRK10802 peptidoglycan-associa 37.7 30 0.00077 15.2 7.7 11 71-81 71-81 (173)
169 KOG1280 consensus 37.4 11 0.00028 18.0 0.4 17 74-90 79-95 (381)
170 TIGR02182 GRXB Glutaredoxin, G 37.3 12 0.00031 17.7 0.6 10 76-85 7-16 (212)
171 TIGR00424 APS_reduc 5'-adenyly 36.7 31 0.00079 15.2 3.0 34 191-224 427-467 (469)
172 TIGR02533 type_II_gspE general 36.4 11 0.00027 18.1 0.2 19 76-94 384-402 (495)
173 cd03017 PRX_BCP Peroxiredoxin 36.3 32 0.00081 15.1 4.0 29 66-94 25-53 (140)
174 cd03823 GT1_ExpE7_like This fa 36.0 23 0.0006 15.9 1.8 37 196-232 295-333 (359)
175 pfam07449 HyaE Hydrogenase-1 e 35.9 30 0.00075 15.3 2.4 27 191-217 75-106 (107)
176 TIGR02189 GlrX-like_plant Glut 35.7 29 0.00074 15.4 2.3 18 195-212 60-77 (101)
177 cd03796 GT1_PIG-A_like This fa 35.1 33 0.00084 15.0 3.1 37 195-231 300-336 (398)
178 pfam11032 ApoM Apolipoprotein 32.5 22 0.00057 16.0 1.3 20 65-84 116-135 (186)
179 cd04946 GT1_AmsK_like This fam 31.6 38 0.00096 14.6 2.8 36 195-230 341-379 (407)
180 pfam09673 TrbC_Ftype Type-F co 31.3 33 0.00084 15.0 2.0 16 190-205 63-78 (113)
181 COG1856 Uncharacterized homolo 30.7 17 0.00042 16.9 0.4 20 184-204 139-158 (275)
182 COG1180 PflA Pyruvate-formate 29.5 41 0.001 14.4 2.2 21 66-86 35-58 (260)
183 KOG2846 consensus 29.5 11 0.00028 18.0 -0.7 14 215-228 200-213 (328)
184 pfam04475 DUF555 Protein of un 29.1 35 0.0009 14.8 1.8 23 62-84 35-57 (102)
185 COG3011 Predicted thiol-disulf 29.0 36 0.00093 14.7 1.9 19 67-85 8-26 (137)
186 COG1885 Uncharacterized protei 28.6 39 0.001 14.5 2.0 48 62-114 37-84 (115)
187 TIGR02162 torC trimethylamine- 28.3 29 0.00074 15.3 1.3 34 1-34 7-40 (394)
188 PRK13532 nitrate reductase; Pr 28.0 44 0.0011 14.2 3.1 16 3-18 1-16 (828)
189 pfam04239 DUF421 Protein of un 27.8 44 0.0011 14.2 3.9 15 67-81 9-23 (98)
190 TIGR00373 TIGR00373 conserved 27.3 23 0.00058 16.0 0.6 10 198-207 107-118 (168)
191 PRK07571 bidirectional hydroge 27.2 45 0.0011 14.2 10.5 89 131-227 34-169 (169)
192 PRK10329 glutaredoxin-like pro 27.2 45 0.0011 14.1 4.8 30 192-222 44-73 (81)
193 pfam05495 zf-CHY CHY zinc fing 27.1 17 0.00043 16.8 -0.1 14 70-83 60-73 (74)
194 TIGR01165 cbiN cobalt transpor 26.9 45 0.0012 14.1 3.2 28 3-30 1-31 (94)
195 TIGR01241 FtsH_fam ATP-depende 26.6 46 0.0012 14.1 2.4 73 7-79 4-81 (505)
196 cd03055 GST_N_Omega GST_N fami 26.6 46 0.0012 14.1 2.1 22 66-87 16-37 (89)
197 COG1999 Uncharacterized protei 26.5 46 0.0012 14.1 8.5 135 62-228 64-206 (207)
198 TIGR01111 mtrA tetrahydrometha 26.4 46 0.0012 14.1 2.4 29 48-76 8-36 (246)
199 PRK03681 hypA hydrogenase nick 26.4 20 0.00051 16.4 0.1 22 65-86 78-99 (114)
200 PRK13730 conjugal transfer pil 25.5 48 0.0012 14.0 4.3 27 191-217 152-182 (209)
201 pfam05876 Terminase_GpA Phage 25.3 16 0.00041 17.0 -0.5 18 72-89 198-215 (552)
202 COG1579 Zn-ribbon protein, pos 25.3 23 0.00058 16.0 0.3 17 195-211 186-202 (239)
203 PRK03922 hypothetical protein; 24.7 45 0.0011 14.2 1.7 24 62-85 37-60 (113)
204 KOG2462 consensus 24.1 25 0.00063 15.8 0.3 46 154-200 229-275 (279)
205 TIGR02742 TrbC_Ftype type-F co 23.6 38 0.00097 14.6 1.2 14 191-204 68-81 (139)
206 TIGR01958 nuoE_fam NADH-quinon 23.3 53 0.0014 13.7 2.8 89 130-225 15-152 (153)
207 PRK13622 psbV cytochrome c-550 23.0 45 0.0011 14.2 1.4 26 3-28 12-37 (180)
208 cd02955 SSP411 TRX domain, SSP 22.4 55 0.0014 13.6 3.0 25 64-89 15-39 (124)
209 pfam09439 SRPRB Signal recogni 22.4 55 0.0014 13.6 3.7 35 197-231 111-146 (181)
210 pfam10122 Mu-like_Com Mu-like 22.0 28 0.00071 15.5 0.2 15 72-86 2-16 (51)
211 TIGR00393 kpsF sugar isomerase 21.9 28 0.0007 15.5 0.2 25 193-221 187-212 (272)
212 PRK12366 replication factor A; 21.3 44 0.0011 14.2 1.1 16 68-83 522-542 (649)
213 TIGR00630 uvra excinuclease AB 21.2 46 0.0012 14.1 1.2 18 75-92 272-289 (956)
214 TIGR02194 GlrX_NrdH Glutaredox 20.9 59 0.0015 13.4 2.6 32 189-221 39-71 (72)
215 cd04949 GT1_gtfA_like This fam 20.3 54 0.0014 13.7 1.4 34 198-231 313-348 (372)
216 cd03065 PDI_b_Calsequestrin_N 20.2 61 0.0016 13.3 4.8 36 191-226 80-119 (120)
217 pfam05488 PAAR_motif PAAR moti 20.1 41 0.001 14.4 0.7 14 196-209 2-15 (26)
218 TIGR02305 HpaG-N-term 4-hydrox 20.1 57 0.0015 13.5 1.5 30 199-229 134-163 (206)
219 TIGR01501 MthylAspMutase methy 20.1 62 0.0016 13.3 3.2 70 151-225 39-109 (134)
No 1
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=99.97 E-value=1.9e-30 Score=212.45 Aligned_cols=153 Identities=26% Similarity=0.452 Sum_probs=129.2
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6898888999970588820644334211344320000203799843323430245-777666666665321245588888
Q gi|254780477|r 61 GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST-VAVMLARCAEKRMDGGYWGFVSLL 139 (232)
Q Consensus 61 G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 139 (232)
||+||||+|+||+||.||||+++++.+.++++++ ++++++++++|...... ..+....+++...++++|.+++.+
T Consensus 1 G~~~A~v~ivef~d~~Cp~C~~~~~~l~~~~~~~----~~v~~~~~~~P~~~~~~~~aa~~~~~~~~~~~~~f~~~~~~l 76 (154)
T cd03023 1 GNPNGDVTIVEFFDYNCGYCKKLAPELEKLLKED----PDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNAL 76 (154)
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC----CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999999999988999863788889999999858----870488550642564639999999999986812599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCHHHHH
Q ss_conf 86543321134568998764311000068898640598999999999999998618853657998989961899999999
Q gi|254780477|r 140 FNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFS 219 (232)
Q Consensus 140 ~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~ 219 (232)
|..|.. .+.+.+..++...|++..++..|+++......+.++...+ +++||+|||||+|||+++.|..++++|+
T Consensus 77 ~~~~~~-----~~~~~l~~~a~~~gld~~~f~~~~~s~~~~~~v~~~~~~a-~~~gI~gTPt~~Ing~~~~G~~~~~~l~ 150 (154)
T cd03023 77 MATRGR-----LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLA-RALGITGTPAFIIGDTVIPGAVPADTLK 150 (154)
T ss_pred HHHCCC-----CHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCCCEEEECCEEECCCCCHHHHH
T ss_conf 983642-----0389999999983998899998865888999999989999-9859978998989999943889999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780477|r 220 KIID 223 (232)
Q Consensus 220 ~~id 223 (232)
++||
T Consensus 151 ~~ie 154 (154)
T cd03023 151 EAID 154 (154)
T ss_pred HHHC
T ss_conf 9759
No 2
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=99.96 E-value=2.2e-27 Score=193.05 Aligned_cols=164 Identities=15% Similarity=0.198 Sum_probs=128.3
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98888999970588820644334211344320000203799843323430245777666666665321245588888865
Q gi|254780477|r 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNK 142 (232)
Q Consensus 63 ~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 142 (232)
|+|||+|+||+||.||||++||+.+.++++++.. ++.+...+.+++.......+... +.....+.++.+++.+|+.
T Consensus 13 p~a~vtIvEf~dy~Cp~C~~~~~~l~~~~~~~~~---~v~f~~~pv~~~~~~~~~~A~~~-~~a~~~~~~~~~~~~~F~~ 88 (178)
T cd03019 13 PSGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVPVVFGGGEGEPLARAF-YAAEALGLEDKLHAALFEA 88 (178)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCCCHHHHHHHHH-HHHHHCCCHHHHHHHHHHH
T ss_conf 9999679999888886168882899999984799---75999985567883589999999-9999849487889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEC--CCCCHHHHHH
Q ss_conf 43321134568998764311000068898640598999999999999998618853657998989961--8999999999
Q gi|254780477|r 143 QDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL--GDMSEGVFSK 220 (232)
Q Consensus 143 q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~--g~~~~~~~~~ 220 (232)
+..+.......+.+.+++..+|++..++..|+++....+.|.++.+.+ +.+||+|||||+||||++. +..+.+++..
T Consensus 89 ~~~~~~~~~~~~~l~~~a~~~Gld~~~f~~~~~s~~~~~~i~~~~~~a-~~~gI~gTPtfiINGKy~i~~~~~~~~~~~~ 167 (178)
T cd03019 89 IHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLA-KKYKITGVPAFVVNGKYVVNPSAIGGDDTLQ 167 (178)
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHH-HHHCCCCCCEEEECCEEEECCCCCCHHHHHH
T ss_conf 998501446766899999991989999999970889999999999999-9958986787999999998788788388999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999998603
Q gi|254780477|r 221 IIDSMIQDSTR 231 (232)
Q Consensus 221 ~id~ll~~~~~ 231 (232)
++|.++++.+.
T Consensus 168 ~~~~lv~~~~~ 178 (178)
T cd03019 168 VLDELIEKVRY 178 (178)
T ss_pred HHHHHHHHHHC
T ss_conf 99999998519
No 3
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=99.89 E-value=1.4e-21 Score=156.38 Aligned_cols=159 Identities=14% Similarity=0.217 Sum_probs=108.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHH--HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211--3443200002037998433234302457776666666653212455888888654
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTF--KYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQ 143 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q 143 (232)
++.|+|||+|.||||++|++.+. +.+++...+...+..++..+........+.+.+ .....+.....+..+|+..
T Consensus 38 ~~eV~EfFsy~CpHCy~fEp~l~i~~~~~k~lp~~v~f~r~pv~f~~~~~~~~a~a~~---~a~~lg~~~k~h~~lF~ai 114 (207)
T PRK10954 38 APQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVNFLGPLGKELTQAWA---VAMALGVEDKVTPPLFEGV 114 (207)
T ss_pred CCCEEEEEEECCCCHHHCCHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH---HHHHCCCHHHHHHHHHHHH
T ss_conf 9708999974697255107001516999974899978999644525832699999999---9998497666479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCC---------CC
Q ss_conf 332113456899876431100006889864059899999999999999861885365799898996189---------99
Q gi|254780477|r 144 DDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGD---------MS 214 (232)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~---------~~ 214 (232)
.. .....+.+++..+....|++..++.+.++|..+...+.+.... ++.++|+|||||+||||+.... ..
T Consensus 115 h~-~~~l~~~~~i~~~f~~~Gvd~~~f~~~~~Sf~V~~~v~~a~~~-~~~~~I~gVPt~iVNGKY~Vn~~~~~s~~~~~~ 192 (207)
T PRK10954 115 QK-TQTIQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKA-AADLQLRGVPAMFVNGKYQINPQGMDTSSMDVY 192 (207)
T ss_pred HH-HCCCCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHH-HHHCCCCCCCEEEECCEEEECCCCCCCCCHHHH
T ss_conf 98-6448999999999998399999999998588999999999999-997288878869998999980655664204458
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999986
Q gi|254780477|r 215 EGVFSKIIDSMIQDS 229 (232)
Q Consensus 215 ~~~~~~~id~ll~~~ 229 (232)
.+++..+|+.||+|.
T Consensus 193 ~~~~~~~v~yLl~Ke 207 (207)
T PRK10954 193 VQQYADTVKYLLEKK 207 (207)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999997079
No 4
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.5e-22 Score=157.77 Aligned_cols=169 Identities=30% Similarity=0.431 Sum_probs=116.9
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHHHHHHH-HHH
Q ss_conf 76667841168988889999705888206443342113443200002037998433234302457-7766666666-532
Q gi|254780477|r 52 PSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV-AVMLARCAEK-RMD 129 (232)
Q Consensus 52 ~~~~~~~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~-~~~ 129 (232)
+.+....+.|++++|+++++|+||.||||+..++.+ ++.+.+.++.+++++++++...... +..++..+.+ ..+
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l----~~~~i~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 146 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPEL----KKKYIDDGKVRLVLREFPFLDPACPYCRRAAQAARCAADQ 146 (244)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH----HHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 377655533665787227887447780678877888----9886443887558999652499867789999999986313
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCE
Q ss_conf 1--24558888886543321134568998764311000068898640598999999999999998618853657998989
Q gi|254780477|r 130 G--GYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGN 207 (232)
Q Consensus 130 ~--~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~ 207 (232)
+ +||.+++.+|..|................+.....+ ..+..|+........+.++... ++.+||+|||||||||+
T Consensus 147 ~~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~-a~~~gv~gTPt~~v~~~ 224 (244)
T COG1651 147 GIVRYWAFHDALFGSQAEAWAASILCAKDLAKADLAALD-EGKKAKLNQKACDALIAKNYKL-AQQLGVNGTPTFIVNGK 224 (244)
T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHH-HHHCCCCCCCEEEECCE
T ss_conf 763044799987255104332000335446541344544-4343201225678999999999-99759555864998993
Q ss_pred EECCCCCHHHHHHHHHHHH
Q ss_conf 9618999999999999999
Q gi|254780477|r 208 LYLGDMSEGVFSKIIDSMI 226 (232)
Q Consensus 208 ~~~g~~~~~~~~~~id~ll 226 (232)
.+.|..+++++..+|+..+
T Consensus 225 ~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 225 LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred EECCCCCHHHHHHHHHHHC
T ss_conf 5328899899999999840
No 5
>pfam01323 DSBA DSBA-like thioredoxin domain. This family contains a diverse set of proteins with a thioredoxin-like structure pfam00085. This family also includes 2-hydroxychromene-2-carboxylate (HCCA) isomerase enzymes catalyse one step in prokaryotic polyaromatic hydrocarbon (PAH) catabolic pathways. This family also contains members with functions other than HCCA isomerisation, such as Kappa family GSTs, whose similarity to HCCA isomerases was not previously recognized. One member from Pseudomonas putida has been annotated as a dioxygenase but is almost certainly an HCCA isomerase enzyme. Similarly, a member from Pseudomonas stutzeri has been annotated as a dehydrogenase, but is most probably also an HCCA isomerase enzyme. In addition, a member from Rhizobium leguminosarum has been annotated as a putative glycerol-3-phosphate transfer protein, but is also most likely to be an HCCA isomerase enzyme.
Probab=99.75 E-value=7.5e-17 Score=126.52 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=113.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCH----------------------------------
Q ss_conf 9999705888206443342113443200002037998433234302----------------------------------
Q gi|254780477|r 68 TMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSV---------------------------------- 113 (232)
Q Consensus 68 ~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 113 (232)
||..|+|+.||||+.....+.+.++++. + +.+.++++.+.+.
T Consensus 1 TId~y~D~~cP~~yl~~~~l~~~~~~~~-~---v~i~~~pf~L~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~g~~~~ 76 (191)
T pfam01323 1 TVDEFFDFLCPFCYLAKERLEKLAARYG-D---VKVVYRPFPLAGAKKIGNVGPSNLPVKLKYMMADLERWAALYGIPLR 76 (191)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCC-C---CEEEEEEEECCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9799984888789999999999998769-9---55999962045545557899112799999999999999998489867
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf ------45777666666665321245588888865433211345689987643110000688986405989999999999
Q gi|254780477|r 114 ------STVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGK 187 (232)
Q Consensus 114 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 187 (232)
.....+.....+....+....++..++..-...+......+.|..++.++|++..++.+++++.+..+.+.++.
T Consensus 77 ~~~~~~~~t~~a~~~~~~a~~~~~~~~~~~~l~~a~~~~g~~i~d~~~L~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~ 156 (191)
T pfam01323 77 FPANFLGNSTRANRLALAAGAEGLAEKVVRELFNALWGEGAAITDDSVLREVAEKAGLDAEEFDEFLDSPAVKEAVRENT 156 (191)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99888887078999999998647699999999999885133714678999999872999999999863168999999999
Q ss_pred HHHHHHCCCCCCCEEEECCEEECCCCCHHHHHHHH
Q ss_conf 99998618853657998989961899999999999
Q gi|254780477|r 188 KRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKII 222 (232)
Q Consensus 188 ~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~~~i 222 (232)
+.+ +..||.|||||+|||+.+.|..+.+.+...|
T Consensus 157 ~~a-~~~gv~GvPtfvi~~~~~~G~d~~e~~~~~L 190 (191)
T pfam01323 157 AAA-ISLGVFGVPTFVVGGKMVFGADRLDTLADAL 190 (191)
T ss_pred HHH-HHCCCEECCEEEECCEEEECCCCHHHHHHHH
T ss_conf 999-9859903687999999884899899999975
No 6
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=8.8e-16 Score=119.74 Aligned_cols=166 Identities=16% Similarity=0.243 Sum_probs=128.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH---------------------------
Q ss_conf 88889999705888206443342113443200002037998433234302457---------------------------
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV--------------------------- 116 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 116 (232)
-.+++|..|+|+.||+|...+..+...+.++..+. .+.+.++++-..+....
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~-~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~ 81 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV-RVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLE 81 (225)
T ss_pred CCEEEEEEEECCCCCHHHCCHHHHHHHHHHCCCCE-EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 70589999868869226568999999998568653-68988533224877786554477899998576477899998898
Q ss_pred ---------------------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf ---------------------77666666665321-24558888886543321134568998764311000068898640
Q gi|254780477|r 117 ---------------------AVMLARCAEKRMDG-GYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCL 174 (232)
Q Consensus 117 ---------------------~~a~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 174 (232)
..+....-+...++ ..+.+...+|+.-...+..-...+.|.+++.+.|++...+...+
T Consensus 82 ~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~~L 161 (225)
T COG2761 82 ELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKADL 161 (225)
T ss_pred HHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 76674085136021147886289999999999958338999999999972248888848999999999498899999997
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC-EEECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 59899999999999999861885365799898-9961899999999999999998603
Q gi|254780477|r 175 NDQNILDDIKAGKKRASEDFAIDSTPVFFIGG-NLYLGDMSEGVFSKIIDSMIQDSTR 231 (232)
Q Consensus 175 ~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG-~~~~g~~~~~~~~~~id~ll~~~~~ 231 (232)
.++...+.+..+...+ +..||+|+|||+++| ..+.|+.+++.|..+|++++++.-.
T Consensus 162 ~s~~~~~avr~d~~~A-~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 162 ASDAAKDAVRQDEAAA-QEMGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HCHHHHHHHHHHHHHH-HHCCCCCCCEEEECCCEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 0747899999999999-97798668669971757653888789999999999744566
No 7
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.72 E-value=3.5e-16 Score=122.28 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=112.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH----------------------------------
Q ss_conf 9997058882064433421134432000020379984332343024----------------------------------
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS---------------------------------- 114 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 114 (232)
|..|+|+.||+|+-.+..+.+.+++.. ....+.+.++++...+..
T Consensus 1 I~~~~D~~cPwcyl~~~~l~~ai~~~~-~~~~v~i~~~P~~L~p~~~~~g~~~~~~~~~k~g~~~~~~~~~~~~~~~a~~ 79 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELG-DEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAA 79 (201)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 979980888869977999999999748-8873699998565179887778877899987507819999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH
Q ss_conf -------------5777666666665321245588888865433211345689987643110000688986405989999
Q gi|254780477|r 115 -------------TVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILD 181 (232)
Q Consensus 115 -------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 181 (232)
....+..........+....+.+.+|......+......+.|..++.++|++...+...+.+++...
T Consensus 80 ~g~~~~~~~~~~~~t~~a~r~~~~A~~~g~~~~~~~alf~a~~~~g~di~d~~vL~~~a~~~Gld~~~~~~~~~~~~~~~ 159 (201)
T cd03024 80 EGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYAD 159 (201)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
T ss_conf 39987788889997199999999998535699999999998863799988899999999993979999999860978899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCEE-ECCCCCHHHHHHHHH
Q ss_conf 999999999986188536579989899-618999999999999
Q gi|254780477|r 182 DIKAGKKRASEDFAIDSTPVFFIGGNL-YLGDMSEGVFSKIID 223 (232)
Q Consensus 182 ~i~~~~~~~~~~~gi~gTPt~~VnG~~-~~g~~~~~~~~~~id 223 (232)
.+.++.+++. ..||+|+|||+|||++ +.|+.+.+.|..+|+
T Consensus 160 ~l~~~~~~A~-~~Gv~GvPtfvv~g~~~~~Gaq~~~~~~~~~~ 201 (201)
T cd03024 160 EVRADEARAR-QLGISGVPFFVFNGKYAVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHHHH-HCCCCCCCEEEECCEEEEECCCCHHHHHHHHC
T ss_conf 9999999999-86991237799999888758999999999869
No 8
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=99.59 E-value=6e-15 Score=114.48 Aligned_cols=129 Identities=11% Similarity=0.210 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78411689888899997058882064433421134432000020379984332343024577766666666532124558
Q gi|254780477|r 56 KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGF 135 (232)
Q Consensus 56 ~~~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (232)
...+.|+.+++.+|++|+|+.||||+++|+++.+ +.+ .+.+.+..+|...+..+...+....|..+..+.|..
T Consensus 68 ~~I~~~~~~~~~~i~vFtDp~CpyC~kl~~~l~~-~~~------~i~v~~~~~P~~g~~~s~~~~~~i~Ca~d~~~a~~~ 140 (197)
T cd03020 68 DAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP-NAD------GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTD 140 (197)
T ss_pred CCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHH-HCC------CEEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 3768548998879999979898789999999885-458------849999982157785169999999806899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE-CCEEECCCCC
Q ss_conf 888886543321134568998764311000068898640598999999999999998618853657998-9899618999
Q gi|254780477|r 136 VSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI-GGNLYLGDMS 214 (232)
Q Consensus 136 ~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V-nG~~~~g~~~ 214 (232)
.+.. +........|. ..+.++. ...+.+||+||||+|. ||+.+.|..+
T Consensus 141 ---~~~~---------------------~~~~~~~~~c~------~~v~~~~-~l~~~lGi~GTPtiv~~dG~~v~G~~~ 189 (197)
T cd03020 141 ---AMSG---------------------GKVPPPAASCD------NPVAANL-ALGRQLGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred ---HHHC---------------------CCCCCCCCCCC------CHHHHHH-HHHHHHCCCCCCEEEECCCCCCCCCCC
T ss_conf ---9857---------------------99889644346------4999999-999982998477799689979779899
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780477|r 215 EGVFSKII 222 (232)
Q Consensus 215 ~~~~~~~i 222 (232)
.+++.++|
T Consensus 190 ~~~L~~~L 197 (197)
T cd03020 190 AAQLEALL 197 (197)
T ss_pred HHHHHHHC
T ss_conf 99999439
No 9
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=99.50 E-value=2e-13 Score=104.81 Aligned_cols=128 Identities=15% Similarity=0.224 Sum_probs=77.4
Q ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 1168988889999705888206443342113443200002037998433234302457776-666666653212455888
Q gi|254780477|r 59 SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM-LARCAEKRMDGGYWGFVS 137 (232)
Q Consensus 59 ~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~ 137 (232)
+....+.+.+|.+|.|+.||||+++|.++.... +.+ +.+.+..+|....++.+.. .....|..++.+-|..
T Consensus 101 v~~~~~~k~~i~VFTDpdCpYCrklh~el~~~~-----~~g-ItV~y~~fPr~g~~~~s~~k~~~iWCa~Dr~~A~~~-- 172 (232)
T PRK10877 101 VYKAPQEKHVITVFTDITCGYCHKLHEQMKDYN-----ALG-ITVRYLAFPRQGLESQAEKDMKSIWCAKDKNKAFDD-- 172 (232)
T ss_pred EECCCCCCEEEEEEECCCCHHHHHHHHHHHHHH-----CCC-EEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHH--
T ss_conf 643788757999996999878999999998610-----267-499999604556895379999999854789999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE-CCEEECCCCCHH
Q ss_conf 8886543321134568998764311000068898640598999999999999998618853657998-989961899999
Q gi|254780477|r 138 LLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI-GGNLYLGDMSEG 216 (232)
Q Consensus 138 ~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V-nG~~~~g~~~~~ 216 (232)
.+..+ .+. -..|- + -+.++... .+.+||+||||+|. ||+.++|+.|.+
T Consensus 173 -~~~g~--------------------~~~---~~~C~-~-----pv~~~~~l-g~~lGV~GTPtiv~~dG~~vpGy~pa~ 221 (232)
T PRK10877 173 -AMAGK--------------------DVS---PASCD-V-----DIADHYAL-GVQLGVQGTPAIVLSNGTLVPGYQGPK 221 (232)
T ss_pred -HHCCC--------------------CCC---CCCCC-C-----HHHHHHHH-HHHCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf -97599--------------------999---22278-8-----59999999-998399867759948997987988999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780477|r 217 VFSKIIDSM 225 (232)
Q Consensus 217 ~~~~~id~l 225 (232)
++.+.+++.
T Consensus 222 ~L~~~L~~~ 230 (232)
T PRK10877 222 EMKAFLDEH 230 (232)
T ss_pred HHHHHHHHC
T ss_conf 999999865
No 10
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=99.46 E-value=9.5e-13 Score=100.59 Aligned_cols=134 Identities=15% Similarity=0.208 Sum_probs=80.3
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41168988889999705888206443342113443200002037998433234302457776666666653212455888
Q gi|254780477|r 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVS 137 (232)
Q Consensus 58 ~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 137 (232)
+.-|+++||.+|..|+|++||||++||.++.++++. +++.+.+.+.+.....+.. .+....+..++.+-|..++
T Consensus 112 I~~G~~~a~~~VyVFtDpnCpYC~kl~~~~~p~~~~-----g~v~vr~i~v~~l~~~S~~-kaaaI~~A~Dp~~A~~~~e 185 (253)
T PRK11657 112 ILDGKADAPRVVYVFADPNCPYCKQFWQQARPWVDS-----GKVQLRHILVGIIKPDSPA-KAAAILAAKDPAKALQEYE 185 (253)
T ss_pred CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEEEEECCCCCCHH-HHHHHHCCCCHHHHHHHHH
T ss_conf 112788887799999697984789999997766415-----9569999996045898789-9999980899999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE---CC--EEECCC
Q ss_conf 8886543321134568998764311000068898640598999999999999998618853657998---98--996189
Q gi|254780477|r 138 LLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI---GG--NLYLGD 212 (232)
Q Consensus 138 ~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V---nG--~~~~g~ 212 (232)
.-+. ..++.. .+-...+....|.++...+ +.+|++|||++|. +| +.+.|.
T Consensus 186 ~~~~--------------------~~~~~~----~~~ip~~~~~~l~~n~~Lm-~~lGi~GTPaIvy~d~~g~~~~~~Gl 240 (253)
T PRK11657 186 ASGG--------------------KLGLKP----PASIPAAVRKQLADNQKLM-DDLGANATPAIYYMDKDGTLQQAVGL 240 (253)
T ss_pred HCCC--------------------CCCCCC----CCCCCHHHHHHHHHHHHHH-HHCCCCCCCEEEEECCCCCEEEECCC
T ss_conf 4376--------------------557687----8888889999999999999-98399836669998799988886189
Q ss_pred CCHHHHHHHH
Q ss_conf 9999999999
Q gi|254780477|r 213 MSEGVFSKII 222 (232)
Q Consensus 213 ~~~~~~~~~i 222 (232)
++.++|.+++
T Consensus 241 P~~~~L~~il 250 (253)
T PRK11657 241 PDPAQLNEIM 250 (253)
T ss_pred CCHHHHHHHH
T ss_conf 9989999862
No 11
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=99.44 E-value=3.1e-12 Score=97.36 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=98.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH------HH------------------------
Q ss_conf 899997058882064433421134432000020379984332343024------57------------------------
Q gi|254780477|r 67 VTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS------TV------------------------ 116 (232)
Q Consensus 67 v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~------------------------ 116 (232)
++|..|+|+.||+|....+.+....++ +.....+.+++..+...... ..
T Consensus 1 ikI~~f~D~vCPWCy~~~~~l~~~~~~-~~~~i~~~~~~f~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEE-YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLEL 79 (193)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHC
T ss_conf 989999788798899039999999856-6898479998688899999886447999987289999998386235557735
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf ---------77666666665321245588888865433211345689987643110000688986405989999999999
Q gi|254780477|r 117 ---------AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGK 187 (232)
Q Consensus 117 ---------~~a~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 187 (232)
.......+........+.+...++......+......+.|.+++.+.|++...+...+.+.+..+.+.++.
T Consensus 80 ~~~~~~s~~~~~~~~~a~~~~~~~~~~~~~~l~~a~F~~g~nI~d~~vL~~ia~~~Gld~~~~~~~l~s~~~~~~v~~d~ 159 (193)
T cd03025 80 LLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQEDQ 159 (193)
T ss_pred CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 77877819999999999986844799999999999984688979899999999991999999999976939999999999
Q ss_pred HHHHHHCCCCCCCEEEEC---CE--EECCCCCHH
Q ss_conf 999986188536579989---89--961899999
Q gi|254780477|r 188 KRASEDFAIDSTPVFFIG---GN--LYLGDMSEG 216 (232)
Q Consensus 188 ~~~~~~~gi~gTPt~~Vn---G~--~~~g~~~~~ 216 (232)
+.+ +.+||+|+|||+|| |+ .+.|..+.+
T Consensus 160 ~~a-~~~Gi~gVPt~Vi~d~~~~~~~~~g~~~~~ 192 (193)
T cd03025 160 KLA-RELGINGFPTLVLEDDNGEGILLTGYYPYE 192 (193)
T ss_pred HHH-HHCCCCCCCEEEEEECCCEEEEECCCCCCC
T ss_conf 999-987998524699997897179832572288
No 12
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=99.40 E-value=1.8e-11 Score=92.46 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=98.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CC---C-------CHHHH---------------------
Q ss_conf 9997058882064433421134432000020379984332-34---3-------02457---------------------
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREF-PL---D-------SVSTV--------------------- 116 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~---~-------~~~~~--------------------- 116 (232)
|..|+|+.||+|+-....+....++...+ +.+.+..+ +. . .....
T Consensus 1 Id~y~D~~cP~cylg~~~l~~~~~~~~~~---i~~~Pf~L~~~~~~~g~~~~~~~~~~k~~~~~~d~~r~a~~~gl~~~~ 77 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGAT---VRYRPILLGGVFKATGNVPPANRPPAKGRYRLRDLERWARRYGIPLRF 77 (192)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCE---EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98998389879999999999999975986---999988736644445786511015899999999999999985367888
Q ss_pred --------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
Q ss_conf --------776666666-65321245588888865433211345689987643110000688986405989999999999
Q gi|254780477|r 117 --------AVMLARCAE-KRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGK 187 (232)
Q Consensus 117 --------~~a~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 187 (232)
..+...+.. .........+...+|......+......+.|..++.+.|++.+.+...+.+......+.++.
T Consensus 78 ~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~~lf~a~f~~g~di~d~~vL~~ia~~~Gld~~~~~~~~~~~~~~~~l~~~~ 157 (192)
T cd03022 78 PPRFPPNTLRAMRAALAAQAEGDAAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADDPAVKAALRANT 157 (192)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 88888871889999999998674599999999999862997879899999999983999999998752668999999999
Q ss_pred HHHHHHCCCCCCCEEEECCEEECCCCCHHHHHH
Q ss_conf 999986188536579989899618999999999
Q gi|254780477|r 188 KRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSK 220 (232)
Q Consensus 188 ~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~~ 220 (232)
+++. ..||.|+|||+|||+.+-|.--.+.+..
T Consensus 158 ~~A~-~~Gi~GvPtfvi~~e~f~G~Drl~~l~~ 189 (192)
T cd03022 158 EEAI-ARGVFGVPTFVVDGEMFWGQDRLDMLEE 189 (192)
T ss_pred HHHH-HCCCEECCEEEECCEEEEEHHHHHHHHH
T ss_conf 9999-8799477789999998750520999999
No 13
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=99.36 E-value=4.5e-12 Score=96.34 Aligned_cols=95 Identities=23% Similarity=0.370 Sum_probs=62.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997058882064433421134432000020379984332343024--57776666666653212455888888654332
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS--TVAVMLARCAEKRMDGGYWGFVSLLFNKQDDW 146 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~~ 146 (232)
|++|+||.||||+.+++.+.+.+. ...+.+.+.+++++..... ....++....+......++++++.+
T Consensus 1 i~~f~D~~Cp~C~~~~~~l~~~~~---~~~~~v~v~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l------- 70 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY---ADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL------- 70 (98)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHH---HCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-------
T ss_conf 979989998708989999999998---6588679999847747766703899999999987658299999999-------
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCC
Q ss_conf 113456899876431100006889864059899999999999999861885365799898996189
Q gi|254780477|r 147 INSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGD 212 (232)
Q Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~ 212 (232)
++.+. ++.+||+|||||+|||+.+.|.
T Consensus 71 --------------------------------------~~~~~-~~~~gi~gtPt~vv~~~~~~~~ 97 (98)
T cd02972 71 --------------------------------------ADTAL-ARALGVTGTPTFVVNGEKYSGA 97 (98)
T ss_pred --------------------------------------HHHHH-HHHCCCCCCCEEEECCEECCCC
T ss_conf --------------------------------------83899-9981988898488999981799
No 14
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.84 E-value=2.9e-07 Score=65.96 Aligned_cols=153 Identities=18% Similarity=0.117 Sum_probs=102.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC---------CCCC------------------------
Q ss_conf 8888999970588820644334211344320000203799843---------3234------------------------
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILR---------EFPL------------------------ 110 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~------------------------ 110 (232)
..+-+|.-||||.-|+.+-+++.+... .+.+.....++-++. ..|.
T Consensus 5 ~~~ktIef~fdf~SP~ayL~~~~~~~l-aq~~ga~v~~rP~llg~vfk~tG~~~Pl~~~~~~~dY~~~d~~R~akr~Glp 83 (203)
T COG3917 5 GMNKTIEFYFDFSSPYAYLAWPRLPAL-AQAYGAAVALRPILLGGVFKATGNGVPLIKTPQPGDYITLDLKREAKRHGLP 83 (203)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHH-HHHCCCCEEEEEEEECEEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHCCCC
T ss_conf 888606999965881587602445999-9980985278753002058623788863006887751038889999981996
Q ss_pred -----CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH
Q ss_conf -----302-45777666666665321245588888865433211345689987643110000688986405989999999
Q gi|254780477|r 111 -----DSV-STVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIK 184 (232)
Q Consensus 111 -----~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~ 184 (232)
+.. ....++....+..........+.++++..-.........++.+..++.++|+|..++.....+.++...+.
T Consensus 84 ~~f~~~fp~nt~~~~R~~~~~~~~g~~a~~~~~a~lrAlw~d~~~l~epev~~~vA~~aGlDg~al~A~~gd~eik~~l~ 163 (203)
T COG3917 84 LRFPRHFPPNTLGAARAMIALAMGGGLAEQFAEAVLRALWADGQNLGEPEVVYAVANAAGLDGAALLALLGDDEIKARLK 163 (203)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 44688779832799999999984363479999999999853234468808999999871899799986428899999988
Q ss_pred HHHHHHHHHCCCCCCCEEEECCEEECCCCCHHHH
Q ss_conf 9999999861885365799898996189999999
Q gi|254780477|r 185 AGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVF 218 (232)
Q Consensus 185 ~~~~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~ 218 (232)
.+++++.+ -|+.|+|||||+++.+=|---..++
T Consensus 164 a~~~~a~s-rGvfGaPtfivg~q~fwGqDRL~~l 196 (203)
T COG3917 164 ANTAEAVS-RGVFGAPTFIVGDQLFWGQDRLYQL 196 (203)
T ss_pred HHHHHHHH-CCCCCCCEEEECCEEEECHHHHHHH
T ss_conf 61999986-6766898278788034331378999
No 15
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=98.58 E-value=2.7e-06 Score=59.74 Aligned_cols=137 Identities=7% Similarity=-0.006 Sum_probs=75.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC------C-----------------------------
Q ss_conf 99997058882064433421134432000020379984332343------0-----------------------------
Q gi|254780477|r 68 TMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLD------S----------------------------- 112 (232)
Q Consensus 68 ~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----------------------------- 112 (232)
+|.-|||+.|||++-.+..+.....++..+ ..++-+.....+. +
T Consensus 2 kIdfyfd~~SPysYLa~~~l~~l~~~~~~~-i~~~Pv~lg~i~~~~G~~pp~~~p~K~~Y~~~D~~R~A~~~gvp~~~p~ 80 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVD-ITYVPVFLGGIMKDSGNKPPIMLPNKAKYMAKDRKRSAEFFGVPIRQPK 80 (209)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCE-EEEEEEECHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 489998489989999899999999981983-8999875088898707998232302888899999999999499867899
Q ss_pred ------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHCCHH
Q ss_conf ------2457776666-6666532124558888886543----321134568998764311000---0688986405989
Q gi|254780477|r 113 ------VSTVAVMLAR-CAEKRMDGGYWGFVSLLFNKQD----DWINSKNYRDALLNMAKFAGF---SKNDFDTCLNDQN 178 (232)
Q Consensus 113 ------~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~q~----~~~~~~~~~~~l~~~~~~~g~---~~~~~~~~~~~~~ 178 (232)
.......... ++..........+.+.++..-. .........+.+..++..+|+ +...+.+...+.+
T Consensus 81 ~~~~~p~~~~~~~r~l~a~~~~~~~~~~~~~~~~~~a~w~~~~~~~~d~~~~~~l~~~~~~~gl~~~d~~~ll~~~~~~~ 160 (209)
T cd03021 81 DFFFMKKGTLTAQRFLTAISEQHPESTLTALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQAEKLLKAASTPE 160 (209)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHH
T ss_conf 99899944099999999998407631899999999999985605699844488999999982876023999998746999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 9999999999999861885365799898
Q gi|254780477|r 179 ILDDIKAGKKRASEDFAIDSTPVFFIGG 206 (232)
Q Consensus 179 ~~~~i~~~~~~~~~~~gi~gTPt~~VnG 206 (232)
..+.+.++++++.+ .|+.|+|||+|++
T Consensus 161 ~k~~L~~nt~~Ai~-~GvFGvPtf~v~~ 187 (209)
T cd03021 161 VKNRLKENTDEALK-YGAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHHHHHHHHH-CCCCCCCEEEEEC
T ss_conf 99999999999998-8986289899978
No 16
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.49 E-value=1.2e-06 Score=61.97 Aligned_cols=116 Identities=10% Similarity=0.277 Sum_probs=64.5
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41168988889999705888206443342113443200002037998433234302457776666666653212455888
Q gi|254780477|r 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVS 137 (232)
Q Consensus 58 ~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 137 (232)
+.+-+-..+++|+-|+--.||+|++-++.+.+..+++ .+.+ +.++-.... ... ..
T Consensus 55 v~lsd~kGK~vll~FWAtWC~pC~~E~P~L~~l~~~~-~~~~-v~vi~i~~d--~~~--~~------------------- 109 (176)
T PRK03147 55 IELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKY-KEKG-VEIIAVNVD--ETD--IA------------------- 109 (176)
T ss_pred EEHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-HCCC-EEEEEECCC--CCH--HH-------------------
T ss_conf 7189969997999997897927546715599999985-3064-478522078--878--88-------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE---CCE---EECC
Q ss_conf 8886543321134568998764311000068898640598999999999999998618853657998---989---9618
Q gi|254780477|r 138 LLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI---GGN---LYLG 211 (232)
Q Consensus 138 ~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V---nG~---~~~g 211 (232)
...+.++.+..- .-..+.+ ....+.+|+.|+|+.+| ||+ .+.|
T Consensus 110 ------------------v~~f~~~~~~~~---pv~~D~~----------~~~~~~~~v~~~P~t~lId~~G~I~~~~~G 158 (176)
T PRK03147 110 ------------------VKNFVNQYGLKF---PVAIDKG----------RQVIDAYGVGPLPTTFLIDKDGKVVKVITG 158 (176)
T ss_pred ------------------HHHHHHHCCCCC---EEEECCC----------CHHHHHCCCCCCCEEEEECCCCEEEEEEEC
T ss_conf ------------------988898709962---2898797----------358987699988869999799979999978
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999986
Q gi|254780477|r 212 DMSEGVFSKIIDSMIQDS 229 (232)
Q Consensus 212 ~~~~~~~~~~id~ll~~~ 229 (232)
..+.+++++.|+++++|+
T Consensus 159 ~i~~~~l~~~i~~lk~e~ 176 (176)
T PRK03147 159 EMTEEMLEEYLNKIKPEA 176 (176)
T ss_pred CCCHHHHHHHHHHHHCCC
T ss_conf 999999999999874469
No 17
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.9e-05 Score=54.48 Aligned_cols=95 Identities=13% Similarity=0.198 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCEEE
Q ss_conf 5588888865433211345689987643110000688986405-98999999999999998618853657998--98996
Q gi|254780477|r 133 WGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLN-DQNILDDIKAGKKRASEDFAIDSTPVFFI--GGNLY 209 (232)
Q Consensus 133 ~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~gi~gTPt~~V--nG~~~ 209 (232)
+++..++-...-.++......+.+..++.+.|+..+.+...+. +.+.......+.....+++|+.|.||+.+ ||+..
T Consensus 108 l~ml~aIQrA~YvEGrdi~~t~vl~~laa~~GL~~~~f~~~f~~s~~~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~ 187 (212)
T COG3531 108 LTMLHAIQRAHYVEGRDITQTEVLAELAAAIGLAAEEFDNAFDQSGAARQAHIADSRRLMQRLGAAGFPTLALERNGTMY 187 (212)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEE
T ss_conf 17999999998860566103399999999839998999985615678888899999999999455888711000589467
Q ss_pred C---C--CCCHHHHHHHHHHHHH
Q ss_conf 1---8--9999999999999999
Q gi|254780477|r 210 L---G--DMSEGVFSKIIDSMIQ 227 (232)
Q Consensus 210 ~---g--~~~~~~~~~~id~ll~ 227 (232)
. | ..++++|..-+.+.+.
T Consensus 188 ~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 188 VLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 51587655880999999999872
No 18
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.04 E-value=2.5e-05 Score=53.70 Aligned_cols=83 Identities=13% Similarity=0.283 Sum_probs=55.3
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68988889999705888206443342113443200002037998433234302457776666666653212455888888
Q gi|254780477|r 61 GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLF 140 (232)
Q Consensus 61 G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (232)
.+.+-| +++.|+...|++|+.+.+.+.+..+++ .+ .+.+.....
T Consensus 9 ~s~~~P-Vlv~F~A~wC~~C~~~~p~l~~~a~~~-~~--~~~~~~vd~-------------------------------- 52 (96)
T cd02956 9 ESTQVP-VVVDFWAPRSPPSKELLPLLERLAEEY-QG--QFVLAKVNC-------------------------------- 52 (96)
T ss_pred HCCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHC-CC--EEEEEEEEC--------------------------------
T ss_conf 759980-999998899976899899999999855-65--299999803--------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCEE---ECCCCCH
Q ss_conf 6543321134568998764311000068898640598999999999999998618853657998--9899---6189999
Q gi|254780477|r 141 NKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI--GGNL---YLGDMSE 215 (232)
Q Consensus 141 ~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V--nG~~---~~g~~~~ 215 (232)
+ . ..+.++++||+|+||+++ ||+. +.|..+.
T Consensus 53 -------------------------d------------------~-~~~la~~~~V~~~Pt~~~f~~G~~v~~~~G~~~~ 88 (96)
T cd02956 53 -------------------------D------------------A-QPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPE 88 (96)
T ss_pred -------------------------C------------------C-CHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCH
T ss_conf -------------------------3------------------4-6546876787616838889999994577189999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780477|r 216 GVFSKIID 223 (232)
Q Consensus 216 ~~~~~~id 223 (232)
+++++.||
T Consensus 89 ~~l~~~le 96 (96)
T cd02956 89 EQLRQMLD 96 (96)
T ss_pred HHHHHHHC
T ss_conf 99999769
No 19
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.02 E-value=6.6e-05 Score=51.03 Aligned_cols=44 Identities=11% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHHHCCCCCCCEEEE---C-CE---EECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9998618853657998---9-89---9618999999999999999986039
Q gi|254780477|r 189 RASEDFAIDSTPVFFI---G-GN---LYLGDMSEGVFSKIIDSMIQDSTRR 232 (232)
Q Consensus 189 ~~~~~~gi~gTPt~~V---n-G~---~~~g~~~~~~~~~~id~ll~~~~~~ 232 (232)
+.+++++|.||||+++ + |+ .+.|..+.++|.++++...+++-||
T Consensus 75 ~la~~~~v~~tPT~~fld~~gg~~i~~~~Gy~~~~~f~~~L~yv~~~~yk~ 125 (125)
T cd02951 75 ELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKAYKK 125 (125)
T ss_pred HHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999986987677799986999867777259789999999999997186569
No 20
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.00 E-value=5.4e-05 Score=51.55 Aligned_cols=87 Identities=20% Similarity=0.327 Sum_probs=59.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211344320000203799843323430245777666666665321245588888865433
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDD 145 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~ 145 (232)
+-++++|.--.|++|+.+.+.+.+. ++.|.+..++..+....
T Consensus 21 KPvlVdFyA~WC~~Ck~maP~le~l-~~~Y~dkv~fv~vNVDn------------------------------------- 62 (142)
T cd02950 21 KPTLVEFYADWCTVCQEMAPDVAKL-KQKYGDQVNFVMLNVDN------------------------------------- 62 (142)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHH-HHHHCCCCEEEEEECCC-------------------------------------
T ss_conf 9789999899897788773899999-99958921499997888-------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE---CCEE---ECCCCCHHHHH
Q ss_conf 21134568998764311000068898640598999999999999998618853657998---9899---61899999999
Q gi|254780477|r 146 WINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI---GGNL---YLGDMSEGVFS 219 (232)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V---nG~~---~~g~~~~~~~~ 219 (232)
.. +... +++|||+|.|||++ +|+. ..|..+..+++
T Consensus 63 -------------------------------~~-------w~~~-~~~y~V~giPt~~~fd~~G~~~~~~iG~~pe~~l~ 103 (142)
T cd02950 63 -------------------------------PK-------WLPE-IDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLA 103 (142)
T ss_pred -------------------------------CC-------CHHH-HHHHCCCCCCEEEEECCCCCEEEEECCCCCHHHHH
T ss_conf -------------------------------70-------5679-99819788876999868996910353769889999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999986
Q gi|254780477|r 220 KIIDSMIQDS 229 (232)
Q Consensus 220 ~~id~ll~~~ 229 (232)
..+|+|++..
T Consensus 104 ~~l~aL~~~~ 113 (142)
T cd02950 104 QNLDALVAGE 113 (142)
T ss_pred HHHHHHHCCC
T ss_conf 9999998289
No 21
>PRK10996 thioredoxin 2; Provisional
Probab=97.95 E-value=7e-05 Score=50.86 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=30.9
Q ss_pred HHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHHHHH
Q ss_conf 98618853657998--9899---618999999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIIDSMI 226 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id~ll 226 (232)
++++||+|.|||++ ||+. +.|..+..+++..|++.|
T Consensus 99 a~~~~I~siPTlilfk~G~~v~r~~Ga~p~~~l~~wl~q~L 139 (139)
T PRK10996 99 SARFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHHCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 88707671885999989989777768999999999999649
No 22
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.91 E-value=6e-05 Score=51.29 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=54.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211344320000203799843323430245777666666665321245588888865433
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDD 145 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~ 145 (232)
+.+++.|+-..|++|+.+.|.+.....++ .+ ++.++....
T Consensus 14 k~VlV~F~A~wCgpCk~l~P~l~~la~ey-~~--~v~f~kvDv------------------------------------- 53 (97)
T cd02949 14 RLILVLYTSPTCGPCRTLKPILNKVIDEF-DG--AVHFVEIDI------------------------------------- 53 (97)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHC-CC--CEEEEEEEC-------------------------------------
T ss_conf 94999998999856564269999999983-79--719999968-------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHH
Q ss_conf 21134568998764311000068898640598999999999999998618853657998--9899---618999999999
Q gi|254780477|r 146 WINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSK 220 (232)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~ 220 (232)
+ .+ .+.++.+||+|+||+++ ||+. +.|..+-+++++
T Consensus 54 --------------------d------------------~~-~~la~~~~I~~~PT~~~fk~g~~v~~~~G~~~~~~l~~ 94 (97)
T cd02949 54 --------------------D------------------ED-QEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYRE 94 (97)
T ss_pred --------------------C------------------CC-HHHHHHCCCCCCCEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf --------------------8------------------79-88999819931778999999999688888888999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780477|r 221 IID 223 (232)
Q Consensus 221 ~id 223 (232)
.||
T Consensus 95 ~ie 97 (97)
T cd02949 95 FIE 97 (97)
T ss_pred HHC
T ss_conf 759
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=97.87 E-value=0.00016 Score=48.64 Aligned_cols=37 Identities=19% Similarity=0.585 Sum_probs=31.4
Q ss_pred HHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHHHHHH
Q ss_conf 98618853657998--9899---6189999999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIIDSMIQ 227 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id~ll~ 227 (232)
++++||+|+||+++ ||+. ..|..+.+++++.|++.|.
T Consensus 68 a~~~~V~~vPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~La 109 (109)
T PRK09381 68 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred HHHCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 875275768849999999897887279999999999998609
No 24
>pfam00085 Thioredoxin Thioredoxin. Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise.
Probab=97.69 E-value=9.6e-05 Score=49.99 Aligned_cols=34 Identities=15% Similarity=0.422 Sum_probs=28.8
Q ss_pred HHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHHH
Q ss_conf 98618853657998--9899---6189999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIIDS 224 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id~ 224 (232)
.++++|+|+||+++ ||+. +.|..+.+++.+.|++
T Consensus 65 ~~~~~i~~~Pti~~~~~G~~v~~~~G~~~~e~l~~~i~~ 103 (104)
T pfam00085 65 ASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKK 103 (104)
T ss_pred HHCCCCEECCEEEEEECCEEEEEEECCCCHHHHHHHHHH
T ss_conf 324796250908999899598888789999999999973
No 25
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00054 Score=45.26 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=32.9
Q ss_pred HHHHHHHCCCCCCCEEEE---CCE---EECCCCCHHHHHHHHHHHHHH
Q ss_conf 999998618853657998---989---961899999999999999998
Q gi|254780477|r 187 KKRASEDFAIDSTPVFFI---GGN---LYLGDMSEGVFSKIIDSMIQD 228 (232)
Q Consensus 187 ~~~~~~~~gi~gTPt~~V---nG~---~~~g~~~~~~~~~~id~ll~~ 228 (232)
+.+.++.++++|||||+. +|+ .++|.+|+++|..++...-++
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999998735556865999858897798647878989999999998777
No 26
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.52 E-value=0.00037 Score=46.27 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=28.6
Q ss_pred HHHCCCCCCCEEEE--CCE--EECCCCCHHHHHHHHHHH
Q ss_conf 98618853657998--989--961899999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGN--LYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~--~~~g~~~~~~~~~~id~l 225 (232)
.+++||+|-||+++ ||+ .+.|..+.+++.+.|+++
T Consensus 65 ~~~~~I~~~PTi~~f~~~~~~~Y~G~rt~~~l~~Fi~k~ 103 (104)
T cd03000 65 ASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred HHHCCCCCCCEEEEEECCEEEEECCCCCHHHHHHHHHHH
T ss_conf 977698446889999799577503899999999999963
No 27
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.39 E-value=0.00041 Score=45.98 Aligned_cols=34 Identities=18% Similarity=0.507 Sum_probs=27.1
Q ss_pred HHHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHH
Q ss_conf 998618853657998--9899---618999999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIID 223 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id 223 (232)
.++++||.|+||+++ ||+. +.|..+.++++..|+
T Consensus 55 l~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~ 93 (93)
T cd02947 55 LAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred HHHCCCCCCCCCEEEEECCEEEEEEECCCCHHHHHHHHC
T ss_conf 530578673696899989989999978999999999669
No 28
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.33 E-value=0.00089 Score=43.89 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=28.5
Q ss_pred HHHHCCCCCCCEEEE--CCE--EECCCCCHHHHHHHHHH
Q ss_conf 998618853657998--989--96189999999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGN--LYLGDMSEGVFSKIIDS 224 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~--~~~g~~~~~~~~~~id~ 224 (232)
.++++||+|-||++. ||+ .+.|..+.++|.+.|++
T Consensus 63 l~~~~~I~~~PTi~~~~~G~~~~y~G~rt~~~l~~fi~e 101 (101)
T cd02994 63 LSGRFFVTALPTIYHAKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred HHHHCCEEEEEEEEEEECCCEEEEECCCCHHHHHHHHHC
T ss_conf 785478078418999819938661479999999999709
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.18 E-value=0.002 Score=41.65 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=25.7
Q ss_pred HHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHH
Q ss_conf 98618853657998--9899---61899999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKII 222 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~i 222 (232)
.++++|.|.||+++ ||+. +.|..+.++|.+.|
T Consensus 68 ~~~~~V~~~PTi~~f~~G~~~~~y~G~r~~e~l~~Fi 104 (104)
T cd02997 68 KEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred HHHCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHC
T ss_conf 8654645587899998994967777788989999659
No 30
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.12 E-value=0.0024 Score=41.21 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=26.5
Q ss_pred HHHHCCCCCCCEEEE---CCE----EECCCCCHHHHHHHHH
Q ss_conf 998618853657998---989----9618999999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI---GGN----LYLGDMSEGVFSKIID 223 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V---nG~----~~~g~~~~~~~~~~id 223 (232)
..+++|+.|+||+++ +|. .+.|..+.++|.+.|+
T Consensus 64 l~~~~~v~g~Pt~~f~~~~g~~~~~~l~G~~~~~~fl~~Le 104 (104)
T cd02953 64 LLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHCCCCCCCEEEEECCCCCCCCCEEECCCCHHHHHHHHC
T ss_conf 99983995567799987999867626123048999999759
No 31
>KOG0910 consensus
Probab=97.08 E-value=0.005 Score=39.15 Aligned_cols=88 Identities=17% Similarity=0.374 Sum_probs=61.3
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68988889999705888206443342113443200002037998433234302457776666666653212455888888
Q gi|254780477|r 61 GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLF 140 (232)
Q Consensus 61 G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 140 (232)
=+.+-|| |+.|.--.|..|+...|.+.+...++ .+++++.....-
T Consensus 58 i~S~~PV-lVdF~A~WCgPCk~l~P~l~~~~~~~---~g~~k~~kvdtD------------------------------- 102 (150)
T KOG0910 58 INSDVPV-LVDFHAEWCGPCKMLGPILEELVSEY---AGKFKLYKVDTD------------------------------- 102 (150)
T ss_pred HCCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHH---CCEEEEEEECCC-------------------------------
T ss_conf 7469988-99986575743767469999987753---371789997265-------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCEEE---CCCCCH
Q ss_conf 6543321134568998764311000068898640598999999999999998618853657998--98996---189999
Q gi|254780477|r 141 NKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI--GGNLY---LGDMSE 215 (232)
Q Consensus 141 ~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V--nG~~~---~g~~~~ 215 (232)
. .-+.+..|+|+..||+++ ||++. .|..+.
T Consensus 103 --------------------------------------------~-~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~ 137 (150)
T KOG0910 103 --------------------------------------------E-HPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPK 137 (150)
T ss_pred --------------------------------------------C-CCCHHHHCCEEEEEEEEEEECCEEEEEECCCCCH
T ss_conf --------------------------------------------6-6013764631650289998799886622045798
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254780477|r 216 GVFSKIIDSMIQD 228 (232)
Q Consensus 216 ~~~~~~id~ll~~ 228 (232)
+.+.+.|+..|++
T Consensus 138 ~~l~~~i~k~l~~ 150 (150)
T KOG0910 138 EQLRSLIKKFLKL 150 (150)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997529
No 32
>TIGR00411 redox_disulf_1 redox-active disulfide protein 1; InterPro: IPR004502 This group of proteins includes thioredoxins, glutaredoxins, protein-disulphide isomerases, and others, some of which have several such domains. The sequence of proteins in this group at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although overall the sequence seems closer to thioredoxins. Proteins may be involved in a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=97.03 E-value=0.00048 Score=45.59 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=31.7
Q ss_pred HHHHHHCCCCCCCEEEECCEE-ECCCCCHHHHHHHHHHH
Q ss_conf 999986188536579989899-61899999999999999
Q gi|254780477|r 188 KRASEDFAIDSTPVFFIGGNL-YLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 188 ~~~~~~~gi~gTPt~~VnG~~-~~g~~~~~~~~~~id~l 225 (232)
++|. .|||.|+||++|||++ +.|.++-++|..+|..+
T Consensus 44 ~kA~-~yGi~aVPaivINg~v~f~GaP~~eeL~eaI~k~ 81 (82)
T TIGR00411 44 KKAL-EYGIMAVPAIVINGKVRFVGAPDKEELVEAIRKR 81 (82)
T ss_pred HHHH-HCCCCCCCEEEECCEEEEEEECCHHHHHHHHHHC
T ss_conf 7887-5163526847877906885308868999997631
No 33
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.03 E-value=0.0032 Score=40.40 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=28.2
Q ss_pred CCCCC-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 41168-988889999705888206443342113443200
Q gi|254780477|r 58 VSIGQ-KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKY 95 (232)
Q Consensus 58 ~~~G~-~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~ 95 (232)
+.+.+ .+.+++|+.|..-.||+|+...+.+....+++.
T Consensus 17 ~~Lsd~~~~k~vvl~F~~~~CP~c~~~~p~l~~l~~~~~ 55 (171)
T cd02969 17 YSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYG 55 (171)
T ss_pred EEHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 868997799989999958999178888876556776763
No 34
>PTZ00102 disulphide isomerase; Provisional
Probab=96.92 E-value=0.0036 Score=40.05 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 888999970588820644334211344320
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
-+..+|+|+-+.|+||+++.|+....-.+.
T Consensus 50 ~~~vLV~FYAPWCGHCK~LaPey~~AA~~L 79 (479)
T PTZ00102 50 NDLVLVKFYAPWCGHCKRLAPEYNKAAKML 79 (479)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 982899998986587774659999999998
No 35
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.82 E-value=0.0017 Score=42.03 Aligned_cols=33 Identities=18% Similarity=0.426 Sum_probs=26.4
Q ss_pred HHHHCCCCCCCEEEE--CCE----EECCCCCHHHHHHHH
Q ss_conf 998618853657998--989----961899999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGN----LYLGDMSEGVFSKII 222 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~----~~~g~~~~~~~~~~i 222 (232)
..++++|+|.||+++ ||+ .+.|..+.++|.+.|
T Consensus 70 l~~~~~I~~yPTi~lf~~G~~~~~~Y~G~Rs~e~l~~Fi 108 (108)
T cd02996 70 IADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred HHHHCCCCCCCEEEEEECCCCCCEEECCCCCHHHHHHHC
T ss_conf 799729875777999969949613117989999999659
No 36
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.79 E-value=0.0052 Score=39.04 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=24.6
Q ss_pred HHHHCCCCCCCEEEE--CC-E---EECCCCCHHHHHHHH
Q ss_conf 998618853657998--98-9---961899999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GG-N---LYLGDMSEGVFSKII 222 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG-~---~~~g~~~~~~~~~~i 222 (232)
..++++|++.||+++ +| + .+.|..+.+++.+.|
T Consensus 63 ~~~~~~i~~~Pti~~f~~~~~~~~~y~G~~~~~~l~~fi 101 (101)
T cd02961 63 LCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred HCCCCCEEEECEEEEEECCCEEEEEECCCCCHHHHHHHC
T ss_conf 222677368287999989954355746989999999659
No 37
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.64 E-value=0.007 Score=38.22 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHCCCCCCCEEEE--CCE----EECCCCCHHHHHHH
Q ss_conf 98618853657998--989----96189999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGN----LYLGDMSEGVFSKI 221 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~----~~~g~~~~~~~~~~ 221 (232)
.++++|+|.||+++ +|+ .+.|..+.+++.+.
T Consensus 65 ~~~~~I~~~PTi~~f~~G~~~~~~Y~G~R~~e~l~~F 101 (103)
T cd03001 65 AQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred HHHCCCCEECEEEEEECCCCCEEEECCCCCHHHHHHH
T ss_conf 4426973749899996995561576788999999996
No 38
>KOG3160 consensus
Probab=96.57 E-value=0.046 Score=33.04 Aligned_cols=157 Identities=11% Similarity=0.165 Sum_probs=82.9
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHH-HHHHHHHHCCCCCEEEEEECCCCCCCHHHH------------HH--HHHHHHH
Q ss_conf 68988889999705888206443342-113443200002037998433234302457------------77--6666666
Q gi|254780477|r 61 GQKDAPVTMVEYASMTCFHCAEFHNK-TFKYLEDKYIKTGKLRYILREFPLDSVSTV------------AV--MLARCAE 125 (232)
Q Consensus 61 G~~~A~v~ivef~D~~Cp~C~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--a~~~~~~ 125 (232)
|+..-+|.|+.|..=.||+|.+|..+ +.|........ .+.+.+.++.-..-... .. +...|+-
T Consensus 35 ~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~--~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI 112 (220)
T KOG3160 35 GSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPS--ILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVI 112 (220)
T ss_pred CCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCEEECCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 45577258999998058667999999878998624666--1579997068854656865999359878876668988887
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH-HHCCCCCCCEE
Q ss_conf 65--3212455888888654332113456899876431100006889864059899999999999999-86188536579
Q gi|254780477|r 126 KR--MDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRAS-EDFAIDSTPVF 202 (232)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~gi~gTPt~ 202 (232)
.. .+..+..+..-+.. ...-....+-.+..+.+......|.++......+.....+-. -.-.+.-+|.+
T Consensus 113 ~~l~~~~~~l~~i~C~~~--------~~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi 184 (220)
T KOG3160 113 DTLPDQSDQLPFIRCIQG--------KQKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWI 184 (220)
T ss_pred HHHHCHHHHHCEEHHHHC--------CCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 730355755054013116--------510567887875528777899988657358999999987641459988776768
Q ss_pred EECCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 989899618999999999999999986
Q gi|254780477|r 203 FIGGNLYLGDMSEGVFSKIIDSMIQDS 229 (232)
Q Consensus 203 ~VnG~~~~g~~~~~~~~~~id~ll~~~ 229 (232)
.|||+...... ..|..++=..++..
T Consensus 185 ~vNg~~~~~~~--~~l~~~~C~~~~~~ 209 (220)
T KOG3160 185 LVNGQPLQDAE--QDLVTLLCEAYKGK 209 (220)
T ss_pred EECCCCHHHHH--HHHHHHHHHHHHHC
T ss_conf 88794158888--78999999987542
No 39
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.53 E-value=0.0061 Score=38.59 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=24.8
Q ss_pred HHHCCCCCCCEEEE--CC-E---EECCCCCHHHHHHHH
Q ss_conf 98618853657998--98-9---961899999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GG-N---LYLGDMSEGVFSKII 222 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG-~---~~~g~~~~~~~~~~i 222 (232)
.++++|.|.||+++ +| + .+.|..+.+++.+.|
T Consensus 68 ~~~~~I~~~Pti~~f~~~~~~~~~y~G~r~~~~l~~Fi 105 (105)
T cd02998 68 AKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred HHHCCCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHC
T ss_conf 53157777888999989973278964889999999659
No 40
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.47 E-value=0.019 Score=35.44 Aligned_cols=35 Identities=9% Similarity=0.218 Sum_probs=28.3
Q ss_pred HHHCCCCCCCEEEE--CCEEE---CCCCCHHHHHHHHHHH
Q ss_conf 98618853657998--98996---1899999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNLY---LGDMSEGVFSKIIDSM 225 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~~---~g~~~~~~~~~~id~l 225 (232)
+.++||.|.||+++ ||+.+ .|..+...++..|+++
T Consensus 72 a~~~gV~siPtl~~~~~G~~v~~~~G~~s~~~i~~Fi~kl 111 (111)
T cd02963 72 ARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred HHHCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9981998689899999999988663767989999999739
No 41
>PTZ00051 thioredoxin; Provisional
Probab=96.45 E-value=0.0093 Score=37.43 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=21.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8899997058882064433421134432
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
+.+|+.|+...|++|+.+.+.+....++
T Consensus 19 ~~vvV~F~a~wC~pCk~~~p~~~~l~~~ 46 (98)
T PTZ00051 19 SVVVVDFYAEWCGPCMRFAPQFEELAKE 46 (98)
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 9199999799987511263489999876
No 42
>TIGR01126 pdi_dom protein disulfide-isomerase domain; InterPro: IPR005788 This is a domain of eukaryotic protein disulphide isomerases, generally found in two copies. The domain is similar to thioredoxin but the redox-active disulphide region motif is APWCGHCK. ; GO: 0016853 isomerase activity.
Probab=96.37 E-value=0.0026 Score=40.96 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHHCCCCCCCEEEE--CCE-----EECCCCCHHHHHHHHHH
Q ss_conf 998618853657998--989-----96189999999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGN-----LYLGDMSEGVFSKIIDS 224 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~-----~~~g~~~~~~~~~~id~ 224 (232)
+++++||+|=||+.+ +|+ .|.|.++.+.|.+.|.+
T Consensus 64 l~~~y~V~GfPTikff~~G~~~NP~~Y~G~R~~~~~~~F~~e 105 (107)
T TIGR01126 64 LASRYGVSGFPTIKFFPKGSKENPVDYEGGRDLEAIVEFVNE 105 (107)
T ss_pred CCCEECCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 101002202550578628781489215898687889999860
No 43
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.16 E-value=0.0025 Score=41.05 Aligned_cols=31 Identities=29% Similarity=0.568 Sum_probs=23.6
Q ss_pred HHCCCCCCCEEEE--CCE-----EECCCCCHHHHHHHH
Q ss_conf 8618853657998--989-----961899999999999
Q gi|254780477|r 192 EDFAIDSTPVFFI--GGN-----LYLGDMSEGVFSKII 222 (232)
Q Consensus 192 ~~~gi~gTPt~~V--nG~-----~~~g~~~~~~~~~~i 222 (232)
..++|+|.||+++ +|+ .+.|..+.++|.+.|
T Consensus 67 ~~~~i~~~Pti~lf~~g~~~~~~~y~G~r~~~~l~~Fi 104 (104)
T cd02995 67 SEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred HHCCCCCCCEEEEEECCCCCCCEECCCCCCHHHHHHHC
T ss_conf 45485407789999896777756747888999999659
No 44
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=95.99 E-value=0.027 Score=34.47 Aligned_cols=48 Identities=10% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 168988889999705888206443342113443200002037998433
Q gi|254780477|r 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILRE 107 (232)
Q Consensus 60 ~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (232)
+-+-..+++++.|.--.||.|++..|.+.+.-+++......+.++...
T Consensus 13 Lsd~kGK~vll~FWATWC~PC~~e~P~L~~ly~~~~~~~~~~~vi~Is 60 (131)
T cd03009 13 VSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60 (131)
T ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 999479889999987578666526589999999986138877999985
No 45
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.94 E-value=0.016 Score=36.02 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=28.7
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 411689888899997058882064433421134432000
Q gi|254780477|r 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYI 96 (232)
Q Consensus 58 ~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~ 96 (232)
..+.+-..+++|+.|+--.||.|++-.+.+.+..+++..
T Consensus 16 vsL~~~kGK~Vll~FWatwC~pC~~e~P~l~~l~~~~~~ 54 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD 54 (126)
T ss_pred CCHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 758994999899987224193788772999999997065
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.85 E-value=0.0075 Score=38.04 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8888999970588820644334211344320
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
..+.+|+.|+...||+|....+.+.+..+++
T Consensus 18 ~gk~~vl~f~a~wC~~C~~~~~~l~~~~~~~ 48 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEY 48 (116)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCEEEEECCC
T ss_conf 9995999999278997545364202330134
No 47
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.81 E-value=0.054 Score=32.60 Aligned_cols=48 Identities=10% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 116898888999970588820644334211344320000203799843
Q gi|254780477|r 59 SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILR 106 (232)
Q Consensus 59 ~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~ 106 (232)
.+.+-..+++++-|.-=-||+|+...|.+.+..+++..+...+.++..
T Consensus 11 ~ls~lkGK~vll~FWAsWC~pCr~e~P~L~~ly~~~~~~~~~~~vi~i 58 (132)
T cd02964 11 PVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV 58 (132)
T ss_pred EHHHHCCCEEEEEEECCCCHHHHHHCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 899908988999998456820431058999999998741886899997
No 48
>TIGR01130 ER_PDI_fam protein disulfide isomerases; InterPro: IPR005792 This family represents eukaryotic protein disulphide isomerases retained in the endoplasmic reticulum (ER) and other closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulphide domains, each similar to thioredoxin but with the redox-active disulphide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). ; GO: 0016853 isomerase activity, 0005783 endoplasmic reticulum.
Probab=95.72 E-value=0.0088 Score=37.58 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=15.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8889999705888206443342113
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKTFK 89 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~~~ 89 (232)
.+++||||+=|.|+||+.+.|+...
T Consensus 18 ~~~vLVeFYAPWCGHCK~LAPEY~~ 42 (522)
T TIGR01130 18 NEFVLVEFYAPWCGHCKSLAPEYEK 42 (522)
T ss_pred CCEEEEEECCCCCCHHCCCCHHHHH
T ss_conf 9858999528834411053436899
No 49
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.57 E-value=0.018 Score=35.69 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=25.7
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4116898888999970588820644334211344
Q gi|254780477|r 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYL 91 (232)
Q Consensus 58 ~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l 91 (232)
.+.|..+-+.++++|.-+.|+||+++.|+..+.-
T Consensus 14 ~v~~~~~~k~~lV~FYAPWCghCk~l~P~~~~lA 47 (109)
T cd02993 14 LAKGERRNQSTLVVLYAPWCPFCQAMEASYEELA 47 (109)
T ss_pred HHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9704356998899999998888886778999999
No 50
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.094 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=23.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 888999970588820644334211344320
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
-|| ++-|..+.|++|+++.+.+.....++
T Consensus 44 ~PV-lV~fWap~~~~c~qL~p~Lekla~~~ 72 (304)
T COG3118 44 VPV-LVDFWAPWCGPCKQLTPTLEKLAAEY 72 (304)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 876-99851887706899989999999985
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.48 E-value=0.05 Score=32.83 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999970588820644334211344320
Q gi|254780477|r 67 VTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 67 v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
-.+|.|+.=.||||.+|.+.+..+-.++
T Consensus 71 y~lV~F~rS~CPyChqFAP~Lk~~a~~~ 98 (181)
T PRK13728 71 WKVVLFMQGHCPYCHQFDPVLKQLAQQY 98 (181)
T ss_pred EEEEEEECCCCCHHHHHCHHHHHHHHHH
T ss_conf 1899997388925776588999999985
No 52
>TIGR01130 ER_PDI_fam protein disulfide isomerases; InterPro: IPR005792 This family represents eukaryotic protein disulphide isomerases retained in the endoplasmic reticulum (ER) and other closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulphide domains, each similar to thioredoxin but with the redox-active disulphide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). ; GO: 0016853 isomerase activity, 0005783 endoplasmic reticulum.
Probab=95.10 E-value=0.014 Score=36.38 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-C-EEEEEECCCCC
Q ss_conf 988889999705888206443342113443200002-0-37998433234
Q gi|254780477|r 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKT-G-KLRYILREFPL 110 (232)
Q Consensus 63 ~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~ 110 (232)
.+.|=++|||.=+.|+||+++.| +...|.+.|.+. . .+.+--.....
T Consensus 382 D~~KDVL~EFYAPWCGHCK~L~P-~Y~eLA~~y~~~~~~~VVIAKmDAT~ 430 (522)
T TIGR01130 382 DETKDVLVEFYAPWCGHCKKLAP-IYEELAEKYKDSAEDDVVIAKMDATA 430 (522)
T ss_pred CCCCCEEEEEECCCCCCCCCCCC-HHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 79998899996686761002130-88999999875479870899647775
No 53
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.067 Score=32.02 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCCCCCEEEECCEEECCCCCHHHHHHH
Q ss_conf 885365799898996189999999999
Q gi|254780477|r 195 AIDSTPVFFIGGNLYLGDMSEGVFSKI 221 (232)
Q Consensus 195 gi~gTPt~~VnG~~~~g~~~~~~~~~~ 221 (232)
|.+.+|.+||||+.+-|..+.+.+.+.
T Consensus 50 g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 50 GQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CCCCCCEEEECCEEEECCCCHHHHHHH
T ss_conf 985769899999987165898999864
No 54
>KOG1731 consensus
Probab=94.91 E-value=0.0095 Score=37.39 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 2458766678411689888899997058882064433421134432
Q gi|254780477|r 48 LAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 48 ~~~~~~~~~~~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
...+.....+.+.|++.+ .+|||+.=.|+||+.|.+.....-++
T Consensus 42 i~Ld~~tf~~~v~~~~~~--~lVEFy~swCGhCr~FAPtfk~~A~d 85 (606)
T KOG1731 42 IELDVDTFNAAVFGSRKA--KLVEFYNSWCGHCRAFAPTFKKFAKD 85 (606)
T ss_pred EEEEHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 784142267786166216--89999876525555305689999888
No 55
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.87 E-value=0.04 Score=33.40 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=21.8
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89888899997058882064433421134
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~C~~~~~~~~~~ 90 (232)
+-..+++|+.|+--.||+|++..+.+...
T Consensus 17 ~~~Gk~vvl~FWAtWC~pC~~e~P~l~~l 45 (123)
T cd03011 17 SLSGKPVLVYFWATWCPVCRFTSPTVNQL 45 (123)
T ss_pred HHCCCEEEEEEECCCCCCHHHHCHHHHHH
T ss_conf 96999899999938781365638338888
No 56
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.85 E-value=0.032 Score=34.04 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=20.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8899997058882064433421134
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~ 90 (232)
+..+|+|+.+.||||+++.|...+.
T Consensus 20 ~~~lV~FYApWC~hCk~l~P~~~~~ 44 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKL 44 (114)
T ss_pred CCEEEEEECCCCHHHHHCCHHHHHH
T ss_conf 7099999899783154348699999
No 57
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.77 E-value=0.23 Score=28.61 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=24.5
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 89888899997058882064433421134432
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
.-..|++..-|.--.||.|+.|-|.+.+.-++
T Consensus 22 ~L~GKvVgLYFSA~WCpPCr~FTP~L~~fY~~ 53 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVR 53 (146)
T ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 81899999997478681487677899999999
No 58
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=93.84 E-value=0.15 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 888899997058882064433421134
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~ 90 (232)
..+++|+.|+--.||.|++-.+.+...
T Consensus 24 kGk~vvl~FWAtWC~pC~~e~P~l~~l 50 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred CCCEEEEEEECCCCHHHHHHCCHHHHH
T ss_conf 999899999989586688868107888
No 59
>TIGR01068 thioredoxin thioredoxin; InterPro: IPR005746 Thioredoxins , , , are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. TR-S_2 + NADPH + H^+ -> TR-(SH)_2 + NADP^+ (1) trx-S_2 + TR-(SH)_2 -> trx-(SH)_2 + TR-S_2 (2) Protein-S_2 + trx-(SH)_2 -> Protein-(SH)_2 + trx-S_2 (3) In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide (steps 1 and 2). Reduced thioredoxin then directly reduces the disulphide in the substrate protein (step 3) . Protein disulphide isomerase (PDI), a resident foldase of the endoplasmic recticulum, is a multi-functional protein that catalyses the formation and isomerisation of disulphide bonds during protein folding , . PDI contains 2 redox active domains, near the N- and C-termini, that are similar to thioredoxin: both contribute to disulphide isomerase activity, but are functionally non-equivalent . Interestingly, a mutant PDI, with all 4 of the active cysteines replaced by serine, displays a low but detectable level of disulphide isomerase activity . Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity . A number of endoplasmic reticulum proteins that differ from the PDI major isozyme contain 2 (ERp60, ERp5) or 3 (ERp72 ) thioredoxin domains; all of them seem to be PDIs. 3D-structures have been determined for a number of thioredoxins . The molecule has a doubly-wound alternating alpha/beta fold, consisting of a 5-stranded parallel beta-sheet core, enclosed by 4 alpha-helices. The active site disulphide is located at the N-terminus of helix 2 in a short segment that is separated from the rest of the helix by a kink caused by a conserved proline. The 4-membered disulphide ring is located on the surface of the protein. A flat hydrophobic surface lies adjacent to the disulphide, which presumably facilitates interaction with other proteins. One invariant feature of all thioredoxins is a cis-proline located in a loop preceding beta-strand 4. This residue is positioned in van der Waals contact with the active site cysteines and is important both for stability and function . Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase . Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0006662 glycerol ether metabolic process, 0045454 cell redox homeostasis.
Probab=93.71 E-value=0.087 Score=31.29 Aligned_cols=36 Identities=17% Similarity=0.565 Sum_probs=30.3
Q ss_pred HHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHHHHH
Q ss_conf 98618853657998--9899---618999999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIIDSMI 226 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id~ll 226 (232)
+.+|||++=||+++ ||+. ..|..+-+.|+++|.+.+
T Consensus 61 A~~ygi~SIPTl~lFK~G~~V~~~vGa~pK~~l~~~~~~~~ 101 (101)
T TIGR01068 61 AAKYGIRSIPTLLLFKNGKVVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred HHHCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 44528540563777519825200613569799999998719
No 60
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.61 E-value=0.098 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=23.5
Q ss_pred HHHHCCCCCCCEEEE---CCE---EECC-CCCHHHHHHHH
Q ss_conf 998618853657998---989---9618-99999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI---GGN---LYLG-DMSEGVFSKII 222 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V---nG~---~~~g-~~~~~~~~~~i 222 (232)
..+++||+|.||+++ ||+ .+.| ..+.+.+.+.|
T Consensus 65 ~~~~~~V~~~PTi~lf~~~~~~~~~y~G~~R~~e~l~~fi 104 (104)
T cd03004 65 LCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred HHHCCCCEECCEEEEECCCCCCEEECCCCCCCHHHHHHHC
T ss_conf 7736781883789999198988545789998999999659
No 61
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.48 E-value=0.1 Score=30.93 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=24.8
Q ss_pred HHHHCCCCCCCEEEE--CCE---EECCCCCHHHHHHH
Q ss_conf 998618853657998--989---96189999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGN---LYLGDMSEGVFSKI 221 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~---~~~g~~~~~~~~~~ 221 (232)
..++++|+|-||+++ ||+ .+.|..+.+.|.+.
T Consensus 64 lc~~~~V~~yPTl~~f~~G~~~~~Y~G~Rt~~~l~~F 100 (101)
T cd03003 64 LCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred HHCCCEEEECCEEEEECCCCEEEEEECCCCHHHHHHH
T ss_conf 4013456762489998099701455088999999955
No 62
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=93.37 E-value=0.088 Score=31.26 Aligned_cols=32 Identities=16% Similarity=0.478 Sum_probs=25.4
Q ss_pred HHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHH
Q ss_conf 98618853657998--9899---61899999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKII 222 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~i 222 (232)
.++++|+|.||+++ ||+. +.|..+.+++.+.|
T Consensus 66 ~~~~~I~~~PTl~~f~~G~~~~~y~G~r~~~~l~~fi 102 (102)
T cd03005 66 CSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred HHCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHC
T ss_conf 5311256688799998994968886799989999659
No 63
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=93.34 E-value=0.077 Score=31.62 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=23.5
Q ss_pred HHHCCCCCCCEEEE--CCE--EECCCCCHHHHHHH
Q ss_conf 98618853657998--989--96189999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGN--LYLGDMSEGVFSKI 221 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~--~~~g~~~~~~~~~~ 221 (232)
++++||+|.||+++ ||+ .+.|..+.+.|.+.
T Consensus 65 ~~~ygV~g~PTi~lf~~g~~~~Y~G~Rt~~~l~~F 99 (100)
T cd02999 65 LSRYGVVGFPTILLFNSTPRVRYNGTRTLDSLAAF 99 (100)
T ss_pred HHHCCCCCCCEEEEECCCCEECCCCCCCHHHHHHH
T ss_conf 87467543657999679966047899898999854
No 64
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=93.00 E-value=0.15 Score=29.86 Aligned_cols=32 Identities=13% Similarity=0.321 Sum_probs=25.0
Q ss_pred HHHCCCCCCCEEEE--CCEE--------ECCCCCHHHHHHHH
Q ss_conf 98618853657998--9899--------61899999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL--------YLGDMSEGVFSKII 222 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~--------~~g~~~~~~~~~~i 222 (232)
.++++|+|.||+.+ +|+. +.|..+.+++.+.|
T Consensus 67 ~~~~~I~~~PTi~~f~~G~~~~k~~~~~y~G~Rt~~~i~~Fi 108 (109)
T cd03002 67 CGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 987698448879999596404777862557888999999965
No 65
>PTZ00102 disulphide isomerase; Provisional
Probab=92.90 E-value=0.12 Score=30.43 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=6.7
Q ss_pred HCCCCCCCEEEE
Q ss_conf 618853657998
Q gi|254780477|r 193 DFAIDSTPVFFI 204 (232)
Q Consensus 193 ~~gi~gTPt~~V 204 (232)
.+++++.|++.+
T Consensus 299 ~~~~~~~P~~~~ 310 (479)
T PTZ00102 299 SLLLTEFPGLAY 310 (479)
T ss_pred HCCCCCCCEEEE
T ss_conf 427445865899
No 66
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.44 E-value=0.19 Score=29.16 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=23.3
Q ss_pred HHHHHCCCCCCCEEEECCEEE-CCCCCHHHHH
Q ss_conf 999861885365799898996-1899999999
Q gi|254780477|r 189 RASEDFAIDSTPVFFIGGNLY-LGDMSEGVFS 219 (232)
Q Consensus 189 ~~~~~~gi~gTPt~~VnG~~~-~g~~~~~~~~ 219 (232)
+..+++||.|+|+++|||+.+ .|..+.+++.
T Consensus 56 d~~~~~~ImsVP~vviN~e~~~~G~~~~~ell 87 (89)
T cd03026 56 DEVEERGIMSVPAIFLNGELFGFGRMTLEEIL 87 (89)
T ss_pred HHHHHCCCCCCCEEEECCEEEEECCCCHHHHH
T ss_conf 89997596448979999967740651599894
No 67
>KOG0190 consensus
Probab=92.44 E-value=0.13 Score=30.22 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 888899997058882064433421134
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~ 90 (232)
+-+.+++||+-+.|.||+...|+....
T Consensus 41 ~~~~vlVeFYAPWCghck~LaPey~kA 67 (493)
T KOG0190 41 GHEFVLVEFYAPWCGHCKALAPEYEKA 67 (493)
T ss_pred CCCEEEEEEECHHHHHHHHHCCHHHHH
T ss_conf 684489998722234445308278999
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein; InterPro: IPR011903 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different..
Probab=92.40 E-value=0.11 Score=30.71 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=30.2
Q ss_pred HHHHHHHCCCCCCCEEEECC--E---EECCCCCHHHHHHHHH
Q ss_conf 99999861885365799898--9---9618999999999999
Q gi|254780477|r 187 KKRASEDFAIDSTPVFFIGG--N---LYLGDMSEGVFSKIID 223 (232)
Q Consensus 187 ~~~~~~~~gi~gTPt~~VnG--~---~~~g~~~~~~~~~~id 223 (232)
+.+.+++|||.|+|.++||. . .+.|++|.++|...|-
T Consensus 194 ~~~~Ae~y~V~sVP~IvIN~~~~~kv~F~GA~Pe~~Fl~~~~ 235 (237)
T TIGR02187 194 NPDLAEKYGVMSVPKIVINKDVEDKVEFVGAYPEEQFLEYIL 235 (237)
T ss_pred CHHHHCEECCEECCCEEECCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 833542105044374378188610578973288699999997
No 69
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=92.32 E-value=0.18 Score=29.36 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=25.2
Q ss_pred HHHHCCCCCCCEEEE--CCEEE---CCCCCHHHHHHHHH
Q ss_conf 998618853657998--98996---18999999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGNLY---LGDMSEGVFSKIID 223 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~~~---~g~~~~~~~~~~id 223 (232)
.++++||+++|||++ ||+.+ .|. +++++++.|+
T Consensus 60 l~~~~~I~~~Pt~~~~k~G~~v~~~~G~-~~~~l~~~i~ 97 (97)
T cd02984 60 ISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKELAKKVE 97 (97)
T ss_pred HHHHCCCCCCCEEEEEECCEEEEEEECC-CHHHHHHHHC
T ss_conf 9987398721479999999999999797-9899998529
No 70
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=92.06 E-value=0.27 Score=28.18 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=27.6
Q ss_pred CCCCCCCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 84116898-88899997058882064433421134432
Q gi|254780477|r 57 DVSIGQKD-APVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 57 ~~~~G~~~-A~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
...+|... .+.+++-|....||.|++..|.+...-++
T Consensus 12 ~v~L~~~~~gk~vll~FwatwCP~Ck~emP~l~~~~~~ 49 (114)
T cd02967 12 PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARA 49 (114)
T ss_pred EEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 69805536998499999789886787777789999997
No 71
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=92.05 E-value=0.25 Score=28.43 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=26.9
Q ss_pred HHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHHHH
Q ss_conf 8618853657998--9899---61899999999999999
Q gi|254780477|r 192 EDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 192 ~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id~l 225 (232)
+.+++++.|||++ ||+. +.|+ +.+.+.+.|++|
T Consensus 65 ~~~~i~s~PTf~~fknG~~v~~~~GA-~~~~L~~~I~~l 102 (102)
T cd02948 65 KRYRGKCEPTFLFYKNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred HHHCCEEEEEEEEEECCEEEEEEECC-CHHHHHHHHHHC
T ss_conf 98498863089999999999999798-989999999749
No 72
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109 This entry includes thiol-disulphide isomerase (TrbB), a protein that is involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TrbB has been predicted to contain a thioredoxin fold, it also contains a conserved pair of cysteines and has been shown to function as a thiol disulphide isomerase by complementation of Escherichia coli DsbA mutants . TtbB is believed to be involved in pilin assembly . TrbB is closely related to TraF (IPR014110 from INTERPRO) though somewhat longer lacking the cysteine motif and is apparently not functional as a disulphide bond isomerase..
Probab=91.86 E-value=0.093 Score=31.12 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=21.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8899997058882064433421134432
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
.-.+|-|+-=.||||++|.|.+..+-..
T Consensus 72 ~~~~vfF~~S~CPyCh~FAP~LK~f~~~ 99 (176)
T TIGR02738 72 DYALVFFYQSTCPYCHQFAPVLKRFSQQ 99 (176)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 3507888628896400226577878876
No 73
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=91.05 E-value=0.48 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9888899997058882064433421134432
Q gi|254780477|r 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 63 ~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
...+.+|+.|+--.|+.|+.+.|.+.+.-++
T Consensus 13 a~~kLVVvdF~A~WCgPCk~i~P~~e~La~~ 43 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRT 43 (103)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 7998899999899897777630899999977
No 74
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.46 E-value=0.48 Score=26.62 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=25.9
Q ss_pred HHHHHHCCCCCCCEEEECCEEEC-CCCCHHHHHHHHHH
Q ss_conf 99998618853657998989961-89999999999999
Q gi|254780477|r 188 KRASEDFAIDSTPVFFIGGNLYL-GDMSEGVFSKIIDS 224 (232)
Q Consensus 188 ~~~~~~~gi~gTPt~~VnG~~~~-g~~~~~~~~~~id~ 224 (232)
.+..++++|.++|++|+||+.+. |-.+.+++...++.
T Consensus 160 ~~~~~~~~I~sVP~v~~n~e~~~~g~~~~~~~~~kl~~ 197 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred HHHHHHCCCCCCCEEEECCEEEEECCCCHHHHHHHHHC
T ss_conf 77898648674772777883872256139999999855
No 75
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=90.38 E-value=0.3 Score=27.93 Aligned_cols=19 Identities=21% Similarity=0.599 Sum_probs=16.3
Q ss_pred HHHCCCCCCCEEEECCEEE
Q ss_conf 9861885365799898996
Q gi|254780477|r 191 SEDFAIDSTPVFFIGGNLY 209 (232)
Q Consensus 191 ~~~~gi~gTPt~~VnG~~~ 209 (232)
++++||.|+|+++|||+..
T Consensus 45 ~~~y~V~~VP~ivin~~~~ 63 (67)
T cd02973 45 ADEYGVMSVPAIVINGKVE 63 (67)
T ss_pred HHHCCCCCCCEEEECCEEE
T ss_conf 9976987689899999988
No 76
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=90.32 E-value=0.6 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHCCCCCCCEEEECCEEECCCCCHHHHHHHH
Q ss_conf 8618853657998989961899999999999
Q gi|254780477|r 192 EDFAIDSTPVFFIGGNLYLGDMSEGVFSKII 222 (232)
Q Consensus 192 ~~~gi~gTPt~~VnG~~~~g~~~~~~~~~~i 222 (232)
+..|..++|+++|||+.+.| .+.+.|+++|
T Consensus 44 ~~~g~~~vP~i~i~~~~i~G-f~~~~l~~~l 73 (73)
T cd02976 44 KLNGYRSVPVVVIGDEHLSG-FRPDKLRALL 73 (73)
T ss_pred HHCCCCCCCEEEECCEEEEC-CCHHHHHHHC
T ss_conf 86599961889999999938-7999999649
No 77
>TIGR00411 redox_disulf_1 redox-active disulfide protein 1; InterPro: IPR004502 This group of proteins includes thioredoxins, glutaredoxins, protein-disulphide isomerases, and others, some of which have several such domains. The sequence of proteins in this group at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although overall the sequence seems closer to thioredoxins. Proteins may be involved in a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=90.12 E-value=0.19 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=21.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 89999705888206443342113443200
Q gi|254780477|r 67 VTMVEYASMTCFHCAEFHNKTFKYLEDKY 95 (232)
Q Consensus 67 v~ivef~D~~Cp~C~~~~~~~~~~l~~~~ 95 (232)
|.+..|.++.||||=....-+.+.-++..
T Consensus 1 V~i~lFTSPtCPyCP~A~~VV~~vakE~g 29 (82)
T TIGR00411 1 VKIELFTSPTCPYCPKAEKVVEEVAKEEG 29 (82)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 91355118876888543688988740589
No 78
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=89.39 E-value=0.48 Score=26.61 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=25.6
Q ss_pred HHHHHHCC-CCCCCEEE---EC-CEEECCCCCHHHHHHHHH
Q ss_conf 99998618-85365799---89-899618999999999999
Q gi|254780477|r 188 KRASEDFA-IDSTPVFF---IG-GNLYLGDMSEGVFSKIID 223 (232)
Q Consensus 188 ~~~~~~~g-i~gTPt~~---Vn-G~~~~g~~~~~~~~~~id 223 (232)
++..+.+| -.|||+++ || ++.+.| .+.+.|.++|+
T Consensus 40 ~~~~k~~gG~~gVPv~vsGdi~~~~i~~G-F~~~kld~~l~ 79 (79)
T TIGR02196 40 EELLKKLGGQRGVPVIVSGDIGTHKIIVG-FDPEKLDKLLE 79 (79)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCEEEEE-CCHHHHHHHCC
T ss_conf 99999838985455576342379724870-69799999709
No 79
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=88.42 E-value=0.75 Score=25.38 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9997058882064433421134
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~ 90 (232)
++.|.+..||+|....+.+...
T Consensus 1 l~~f~~~~~~~c~~~~~~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL 22 (69)
T ss_pred CCEEECCCCHHHHHHHHHHHHH
T ss_conf 9479998887889767999999
No 80
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=88.38 E-value=0.67 Score=25.68 Aligned_cols=38 Identities=3% Similarity=0.120 Sum_probs=25.8
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 88999970588820644334211344320000203799843
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILR 106 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~ 106 (232)
+.+|+.|..-.||+|+.+.+.+.+...++.. .+.++..
T Consensus 15 k~vvv~F~a~wC~pCk~~~p~l~~la~~~~~---~v~f~kv 52 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSI 52 (97)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CEEEEEE
T ss_conf 8699999899897489997999999888289---7799997
No 81
>pfam06053 DUF929 Domain of unknown function (DUF929). Family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=88.27 E-value=0.62 Score=25.93 Aligned_cols=32 Identities=13% Similarity=-0.095 Sum_probs=25.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 88889999705888206443342113443200
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDKY 95 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~ 95 (232)
+.++.|..-..+.||+|+.-...+...|..+.
T Consensus 57 ngk~~V~fvsw~GCP~gA~~sW~Ly~ALs~yG 88 (249)
T pfam06053 57 NGKVAVYFVSWEGCPYGAADSWPLYIALSRYG 88 (249)
T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 99269999861368776323689999998569
No 82
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.21 E-value=0.8 Score=25.20 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=70.7
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH---------H------HHH--HH
Q ss_conf 411689888899997058882064433421134432000020379984332343024---------5------777--66
Q gi|254780477|r 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS---------T------VAV--ML 120 (232)
Q Consensus 58 ~~~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~------~~~--a~ 120 (232)
.+.+.-..||+++.+.|-+=+... ++...+.+.-.-..++.+......-.... + ... ..
T Consensus 359 ~~f~r~~~~v~l~~~ld~s~~~S~----El~~~~~e~~~ls~k~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~g 434 (555)
T TIGR03143 359 GIFGRLENPVTLLLFLDGSNEKSA----ELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTG 434 (555)
T ss_pred HHHHHHCCCEEEEEEECCCCHHHH----HHHHHHHHHHHHCCCEEEEEECCCCCCCHHCCCCCCCCCEEEEECCCCCCCC
T ss_conf 999973596799999479806659----9999999998637755899813776520001134345865899878998842
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHCCHHHHHHHHH-----------
Q ss_conf 66666653212455888888654332113456899876431100----006889864059899999999-----------
Q gi|254780477|r 121 ARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAG----FSKNDFDTCLNDQNILDDIKA----------- 185 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g----~~~~~~~~~~~~~~~~~~i~~----------- 185 (232)
.....--..+.|..+.-+++..- +.+...++.+..-.+.+. ....---.|-+=++...+++.
T Consensus 435 i~f~gvP~GhEf~s~vlal~~~~---g~~~~~~~~~~~~i~~~~~~~~~~~~vslsC~~CPdvV~a~~~~a~~np~i~~~ 511 (555)
T TIGR03143 435 LKFHGVPSGHELNSFILALYNAA---GPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAE 511 (555)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 38961788632889999998537---999898989999998458972699999767889869999999999739995199
Q ss_pred -----HHHHHHHHCCCCCCCEEEECCEEE-CCCCCHHHHHHHH
Q ss_conf -----999999861885365799898996-1899999999999
Q gi|254780477|r 186 -----GKKRASEDFAIDSTPVFFIGGNLY-LGDMSEGVFSKII 222 (232)
Q Consensus 186 -----~~~~~~~~~gi~gTPt~~VnG~~~-~g~~~~~~~~~~i 222 (232)
.+.+..++++|.++|++|+||+.+ .|..+.+++..+|
T Consensus 512 ~id~~~f~~~~~~~~im~VP~~~~n~~~~~~g~~~~~~il~~~ 554 (555)
T TIGR03143 512 MIDVSHFPDLKDEYGIMSVPAIVVDDQQVYFGKKTIEEMLELI 554 (555)
T ss_pred EEEHHHCHHHHHHCCCCCCCEEEECCEECCCCCCCHHHHHHHH
T ss_conf 9863638888986396537769999935103635599999850
No 83
>PRK10638 glutaredoxin 3; Provisional
Probab=88.11 E-value=0.63 Score=25.88 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=19.1
Q ss_pred HHCCCCCCCEEEECCEEECCCCCHHH
Q ss_conf 86188536579989899618999999
Q gi|254780477|r 192 EDFAIDSTPVFFIGGNLYLGDMSEGV 217 (232)
Q Consensus 192 ~~~gi~gTPt~~VnG~~~~g~~~~~~ 217 (232)
+..|.+.+|.+||||+.+-|..+...
T Consensus 46 ~~tg~~TVPqIfI~g~~IGG~~dl~~ 71 (83)
T PRK10638 46 KRSGRTTVPQIFIDAQHIGGCDDLYA 71 (83)
T ss_pred HHCCCCCCCEEEECCEEEECHHHHHH
T ss_conf 73699961969999999957899999
No 84
>PHA02125 thioredoxin-like protein
Probab=88.08 E-value=0.48 Score=26.63 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=15.8
Q ss_pred HHHCCCCCCCEEEECCEEEC
Q ss_conf 98618853657998989961
Q gi|254780477|r 191 SEDFAIDSTPVFFIGGNLYL 210 (232)
Q Consensus 191 ~~~~gi~gTPt~~VnG~~~~ 210 (232)
+.++||+|.||++ ||+.+.
T Consensus 39 a~k~~Ir~IPT~i-nG~ev~ 57 (75)
T PHA02125 39 TAKHHIRSLPTLV-NTSTLD 57 (75)
T ss_pred HHHCCCCCCCEEE-CCEEEE
T ss_conf 9874961598178-998952
No 85
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=87.85 E-value=0.71 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999970588820644334211344320000203799
Q gi|254780477|r 68 TMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRY 103 (232)
Q Consensus 68 ~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~ 103 (232)
++|.|.-+.|+||+.+.|...+..++.......+.+
T Consensus 19 ~lV~FyapWC~~C~~~~P~~~~la~~~~~~~~~v~i 54 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKI 54 (102)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999998999977871433699999998841898899
No 86
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=87.48 E-value=1.8 Score=23.01 Aligned_cols=17 Identities=18% Similarity=0.383 Sum_probs=9.7
Q ss_pred EEEEEECCCCCCHHHHH
Q ss_conf 99997058882064433
Q gi|254780477|r 68 TMVEYASMTCFHCAEFH 84 (232)
Q Consensus 68 ~ivef~D~~Cp~C~~~~ 84 (232)
.|..|.--.||+|-+..
T Consensus 3 ~v~i~sk~~c~~c~~a~ 19 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAK 19 (410)
T ss_pred EEEEEECCCCCHHHHHH
T ss_conf 48998059996589999
No 87
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=87.25 E-value=1.1 Score=24.44 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=23.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211344320
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
...+|+|+-..||+|+.+.+...+...++
T Consensus 48 ~~WLV~F~A~W~~~C~~~apifaelS~~y 76 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSLKY 76 (152)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 49999992588878887789999999996
No 88
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=86.43 E-value=1 Score=24.53 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=25.0
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9888899997058882064433421134432
Q gi|254780477|r 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 63 ~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
.++.+.+|+|.-+.|+||+++.++....-+.
T Consensus 27 ~~sei~lV~FYAPWC~hc~~~~pe~~~~A~~ 57 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQK 57 (113)
T ss_pred HCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 4073799999888678899989999999998
No 89
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; InterPro: IPR004799 Periplasmic protein thiol:disulphide oxidoreductase is involved in the biogenesis of c-type cytochromes as well as in disulphide bond formation in some periplasmic proteins. This group defines the DsbE subfamily.; GO: 0015036 disulfide oxidoreductase activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=86.38 E-value=2.5 Score=22.03 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899997058882064433421134432000020379984332343024577766666666532124558888886543
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQD 144 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~ 144 (232)
.+++++-|+-=-||+|+.=|+.+.+.-++ |.++++=..+-.... .|....-.... +|+
T Consensus 64 G~~~LlNVWAsWCp~CraEHp~L~eLak~-----Grl~ivG~dYKD~~~----~Al~~LkelGN-----Py~-------- 121 (175)
T TIGR00385 64 GKPVLLNVWASWCPPCRAEHPYLNELAKE-----GRLPIVGVDYKDQSQ----NALKFLKELGN-----PYQ-------- 121 (175)
T ss_pred CCEEEEEEEECCCCCCHHCCHHHHHHHHC-----CCCEEEEEECCCCCH----HHHHHHHHCCC-----CEE--------
T ss_conf 96069988403688831000578999753-----973078863478845----78888764489-----066--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCE-----EECCCCCHHHH
Q ss_conf 32113456899876431100006889864059899999999999999861885365-7998989-----96189999999
Q gi|254780477|r 145 DWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTP-VFFIGGN-----LYLGDMSEGVF 218 (232)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTP-t~~VnG~-----~~~g~~~~~~~ 218 (232)
....+.. -..+. .+||+|-| ||+|+|. +..|..+.+.|
T Consensus 122 ---------------------------~~~~D~~--------G~~gl-DlGV~GaPETflvdg~G~I~YRhaG~l~~~~w 165 (175)
T TIGR00385 122 ---------------------------LILADPK--------GKLGL-DLGVYGAPETFLVDGNGVILYRHAGPLNKEVW 165 (175)
T ss_pred ---------------------------EEEECCC--------CCEEE-ECCCCCCCCCEEECCCCEEEEEECCCCCCHHH
T ss_conf ---------------------------8887899--------84653-22668898547867986587774378860112
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780477|r 219 SKIIDSMIQD 228 (232)
Q Consensus 219 ~~~id~ll~~ 228 (232)
+..+-..+||
T Consensus 166 ~~~l~P~~EK 175 (175)
T TIGR00385 166 TEELLPALEK 175 (175)
T ss_pred HHHCCCCCCC
T ss_conf 2212522369
No 90
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD; InterPro: IPR013478 MauD appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulphide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulphide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded .; GO: 0030416 methylamine metabolic process.
Probab=85.24 E-value=3 Score=21.56 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCCCCCCC--EEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 411689888--89999705888206443342113443
Q gi|254780477|r 58 VSIGQKDAP--VTMVEYASMTCFHCAEFHNKTFKYLE 92 (232)
Q Consensus 58 ~~~G~~~A~--v~ivef~D~~Cp~C~~~~~~~~~~l~ 92 (232)
+.+|.+.|+ -++..|.-++||-|.+..|-+...-+
T Consensus 65 V~iG~~~a~~R~~LLMFTaPsCPvC~KL~PiIkSia~ 101 (189)
T TIGR02661 65 VRIGGSIALGRPTLLMFTAPSCPVCDKLLPIIKSIAR 101 (189)
T ss_pred EEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 5611755677750354438888532243278988886
No 91
>TIGR02190 GlrX-dom Glutaredoxin-family domain; InterPro: IPR011906 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain..
Probab=84.11 E-value=0.99 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889999705888206443342113443200
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKTFKYLEDKY 95 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~ 95 (232)
.|-.|+.|.=+.||||.+.- ..|+++.
T Consensus 6 ~~~~V~vfTKpGCPFC~~AK----~~L~~~G 32 (79)
T TIGR02190 6 KPESVSVFTKPGCPFCAKAK----AVLKEKG 32 (79)
T ss_pred CCCEEEEEECCCCCHHHHHH----HHHHHCC
T ss_conf 77704898459896446678----8988389
No 92
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=84.04 E-value=2.5 Score=22.06 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=20.4
Q ss_pred HHCCCCCCCEEEECCEEECCCCCHHHHHHH
Q ss_conf 861885365799898996189999999999
Q gi|254780477|r 192 EDFAIDSTPVFFIGGNLYLGDMSEGVFSKI 221 (232)
Q Consensus 192 ~~~gi~gTPt~~VnG~~~~g~~~~~~~~~~ 221 (232)
+..|.+.+|.+||||+.+-| +++|.++
T Consensus 45 ~~tg~~TVPQIFi~~~~IGG---~~dL~~L 71 (73)
T cd03027 45 ERTGSSVVPQIFFNEKLVGG---LTDLKSL 71 (73)
T ss_pred HHHCCCCCCEEEECCEEEEC---HHHHHHH
T ss_conf 97199975979999999828---9999874
No 93
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=82.65 E-value=3.9 Score=20.88 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=33.9
Q ss_pred HHHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 998618853657998--9899---61899999999999999998603
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIIDSMIQDSTR 231 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id~ll~~~~~ 231 (232)
...++|+.-.|++++ +|++ +.|-++|.++...|..++++-..
T Consensus 83 l~~RfGv~r~PaLlflrdg~ylG~lagi~dW~eYv~~i~~lvd~~~~ 129 (132)
T PRK11509 83 IGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred HHHHCCCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHCCHHH
T ss_conf 98760866476489985891776212545689999999987364653
No 94
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=82.52 E-value=2.4 Score=22.23 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=19.8
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8899997058882064433421134
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~ 90 (232)
+.+|+-|+-..|+.|+.+++.+...
T Consensus 23 ~~VVV~Fya~wc~~Ck~l~p~l~~l 47 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEIL 47 (113)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9799999899996678889999999
No 95
>pfam00578 AhpC-TSA AhpC/TSA family. This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA).
Probab=81.76 E-value=1.7 Score=23.11 Aligned_cols=30 Identities=7% Similarity=-0.053 Sum_probs=21.1
Q ss_pred CCEEEEEEECC-CCCCHHHHHHHHHHHHHHH
Q ss_conf 88899997058-8820644334211344320
Q gi|254780477|r 65 APVTMVEYASM-TCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 65 A~v~ivef~D~-~Cp~C~~~~~~~~~~l~~~ 94 (232)
.+.+|+.|+-. .||+|....+.+.+..+++
T Consensus 25 gk~~vl~f~~~~wC~~C~~~~~~l~~~~~~~ 55 (124)
T pfam00578 25 GKWVVLFFYPKDFTPVCTTELPALADLYEEF 55 (124)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9919999988999927299999998744323
No 96
>TIGR02181 GRX_bact glutaredoxin 3; InterPro: IPR011900 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulphides .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=81.41 E-value=0.6 Score=26.00 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=16.9
Q ss_pred CCCCCCCEEEECCEEECCCCCHHHHHHH
Q ss_conf 1885365799898996189999999999
Q gi|254780477|r 194 FAIDSTPVFFIGGNLYLGDMSEGVFSKI 221 (232)
Q Consensus 194 ~gi~gTPt~~VnG~~~~g~~~~~~~~~~ 221 (232)
-|=+.+|-+|||+.=|-| .++|.++
T Consensus 48 ~Gr~TVPQIFIg~~HVGG---cDDL~~L 72 (82)
T TIGR02181 48 GGRRTVPQIFIGDVHVGG---CDDLYAL 72 (82)
T ss_pred CCCCCCCEEEECCCCCCC---CHHHHHH
T ss_conf 899404337629902454---3799998
No 97
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=81.17 E-value=4.3 Score=20.62 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=20.7
Q ss_pred CCCCCCEEEECCEEECCCCCHHHHHHHHHH
Q ss_conf 885365799898996189999999999999
Q gi|254780477|r 195 AIDSTPVFFIGGNLYLGDMSEGVFSKIIDS 224 (232)
Q Consensus 195 gi~gTPt~~VnG~~~~g~~~~~~~~~~id~ 224 (232)
.++.+|-+||||+.+-| +++|.+.+.+
T Consensus 55 ~~~TVPQIfI~g~~IGG---y~dL~~~~~e 81 (87)
T PRK11200 55 PVETVPQIFVDQKHIGG---CTDFEAYVKE 81 (87)
T ss_pred CCCCCCEEEECCEEECC---HHHHHHHHHH
T ss_conf 98743879899998539---9999999985
No 98
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=80.79 E-value=3.7 Score=20.97 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=30.3
Q ss_pred HHHHCCCCCCCEEEE--C-----CEEECCCCCHHHHHHHHHHHHH
Q ss_conf 998618853657998--9-----8996189999999999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--G-----GNLYLGDMSEGVFSKIIDSMIQ 227 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--n-----G~~~~g~~~~~~~~~~id~ll~ 227 (232)
.++++||.-+||+++ + |..+.|.+.-.+|.++|+.++.
T Consensus 67 ~a~k~gVer~Pti~i~~~~~~~~~irf~GiP~G~Ef~slie~Ii~ 111 (113)
T cd02975 67 KAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred HHHHHCCEECCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 999839814657999748887552699507862769999999985
No 99
>KOG4277 consensus
Probab=79.84 E-value=1.3 Score=23.88 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCCCCCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf 41168988889999705888206443342
Q gi|254780477|r 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNK 86 (232)
Q Consensus 58 ~~~G~~~A~v~ivef~D~~Cp~C~~~~~~ 86 (232)
-.+-+.|-.+.+++|.-+.|.||++.+|.
T Consensus 36 kFkdnkdddiW~VdFYAPWC~HCKkLePi 64 (468)
T KOG4277 36 KFKDNKDDDIWFVDFYAPWCAHCKKLEPI 64 (468)
T ss_pred HHHHCCCCCEEEEEEECHHHHHCCCCCCH
T ss_conf 76514668768998654555540334613
No 100
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=79.30 E-value=2.2 Score=22.39 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=11.1
Q ss_pred EEEEEEECCCCCCHHHHHHH
Q ss_conf 89999705888206443342
Q gi|254780477|r 67 VTMVEYASMTCFHCAEFHNK 86 (232)
Q Consensus 67 v~ivef~D~~Cp~C~~~~~~ 86 (232)
+.|-.|.--+|--|+..+.-
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~ 30 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEY 30 (265)
T ss_pred EEEEEEEECCHHHHHHHHHH
T ss_conf 37788871006888999999
No 101
>KOG1752 consensus
Probab=78.39 E-value=4.3 Score=20.60 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCCCCCCEEEECCEEECCCCCHHHHHH--HHHHHHHHH
Q ss_conf 188536579989899618999999999--999999986
Q gi|254780477|r 194 FAIDSTPVFFIGGNLYLGDMSEGVFSK--IIDSMIQDS 229 (232)
Q Consensus 194 ~gi~gTPt~~VnG~~~~g~~~~~~~~~--~id~ll~~~ 229 (232)
.|-+.+|.+||||+.+-|.-+...+.. -+.++|++.
T Consensus 63 tg~~tvP~vFI~Gk~iGG~~dl~~lh~~G~L~~~l~~~ 100 (104)
T KOG1752 63 TGQRTVPNVFIGGKFIGGASDLMALHKSGELVPLLKEA 100 (104)
T ss_pred CCCCCCCEEEECCEEECCHHHHHHHHHCCCHHHHHHHH
T ss_conf 38788997999997886788999999859769999986
No 102
>pfam08534 Redoxin Redoxin. This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins.
Probab=78.12 E-value=3.2 Score=21.41 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=20.0
Q ss_pred CCEEEEEEE-CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 888999970-588820644334211344320
Q gi|254780477|r 65 APVTMVEYA-SMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 65 A~v~ivef~-D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
.+.+|+.|+ .-.||+|....+.+.+...++
T Consensus 27 Gk~vvl~f~~~~wCp~C~~e~~~l~~~~~~~ 57 (142)
T pfam08534 27 GKKVVLNFWPGAFCPTCSAEHPYLEKLSKLY 57 (142)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9969999978988926456356566778874
No 103
>pfam01216 Calsequestrin Calsequestrin.
Probab=78.07 E-value=5.3 Score=20.01 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=17.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 88899997058882064433421
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKT 87 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~ 87 (232)
..+.+++|.-+ |+||+...++.
T Consensus 28 ~d~l~v~f~ap-~g~~k~~~~~y 49 (350)
T pfam01216 28 YEVLALLYHEP-VSDDKASQRQF 49 (350)
T ss_pred CCEEEEEEECC-CCCCHHHHHHH
T ss_conf 85899998789-86555553667
No 104
>KOG0191 consensus
Probab=78.04 E-value=2.2 Score=22.45 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=23.9
Q ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 1689888899997058882064433421134432
Q gi|254780477|r 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 60 ~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
.+..+.+ .+++|++..|+||+++.++.....+.
T Consensus 43 ~~~~~~~-~~v~fyapwc~~c~~l~~~~~~~~~~ 75 (383)
T KOG0191 43 LLKDDSP-WLVEFYAPWCGHCKKLAPTYKKLAKA 75 (383)
T ss_pred HHCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6026885-59999888776367767999999986
No 105
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=76.82 E-value=5.4 Score=19.97 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCCCEEEECCEEECCCCCHHHHHHHHHH
Q ss_conf 85365799898996189999999999999
Q gi|254780477|r 196 IDSTPVFFIGGNLYLGDMSEGVFSKIIDS 224 (232)
Q Consensus 196 i~gTPt~~VnG~~~~g~~~~~~~~~~id~ 224 (232)
..+-=|.+|||++++|+.|.+.++.++..
T Consensus 74 ~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~ 102 (149)
T COG3019 74 MQSCHTAVINGYYVEGHVPAEAIARLLAE 102 (149)
T ss_pred HCCCCEEEECCEEEECCCCHHHHHHHHHC
T ss_conf 46652799868998544879999999827
No 106
>KOG0907 consensus
Probab=76.06 E-value=3.8 Score=20.96 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=23.9
Q ss_pred HHHHCCCCCCCEEEE--CCEE---ECCCCCHHHHHHHHHH
Q ss_conf 998618853657998--9899---6189999999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGNL---YLGDMSEGVFSKIIDS 224 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~~---~~g~~~~~~~~~~id~ 224 (232)
.++.++|.++|||++ ||+. +.|. +.+++.+.|+.
T Consensus 66 ~~~~~~V~~~PTf~f~k~g~~~~~~vGa-~~~~l~~~i~~ 104 (106)
T KOG0907 66 VAKEFNVKAMPTFVFYKGGEEVDEVVGA-NKAELEKKIAK 104 (106)
T ss_pred HHHHCCCEEEEEEEEEECCEEEEEEECC-CHHHHHHHHHH
T ss_conf 7876086164699999898888998469-99999999863
No 107
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=74.76 E-value=6.6 Score=19.42 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHCCCCCCCEEEE---CCE-----EECCCCCHHHHHHHHHHH
Q ss_conf 9998618853657998---989-----961899999999999999
Q gi|254780477|r 189 RASEDFAIDSTPVFFI---GGN-----LYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 189 ~~~~~~gi~gTPt~~V---nG~-----~~~g~~~~~~~~~~id~l 225 (232)
...+++|+.|.|+++. ||+ ++.|..+.++|.+-++++
T Consensus 531 all~~~~~~GpP~~lf~~~~G~e~~~~r~~G~~~~~~f~~~l~~i 575 (577)
T PRK00293 531 ALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAATFAAHLRDL 575 (577)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHC
T ss_conf 999974998898899999999784476157750699999999733
No 108
>TIGR00412 redox_disulf_2 redox-active disulfide protein 2; InterPro: IPR005243 This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archaeoglobus fulgidus, and Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133)) as well as in Anabaena. It is homologous to thioredoxins, glutaredoxins, and protein disulphide isomerases, and shares with them a redox-active disulphide. The redox active disulphide region CXXC motif resembles neither thioredoxin nor glutaredoxin. .
Probab=74.55 E-value=3 Score=21.54 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEE-ECCC-CCHHHHHHHHH
Q ss_conf 689987643110000688986405989999999999999986188536579989899-6189-99999999999
Q gi|254780477|r 152 YRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNL-YLGD-MSEGVFSKIID 223 (232)
Q Consensus 152 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~-~~g~-~~~~~~~~~id 223 (232)
+.+......+++|+|.+ ...+ .+.+++.+ +|+..||.+-|||+. +.|- ++.+++++.|.
T Consensus 17 ~~~nvkkaVeelGiDaE-----------~ekv-~d~nei~E-~Gv~a~PgvavDg~~vi~Gkips~eEIkeilk 77 (78)
T TIGR00412 17 TYENVKKAVEELGIDAE-----------LEKV-TDMNEILE-LGVVATPGVAVDGKVVIEGKIPSKEEIKEILK 77 (78)
T ss_pred HHHHHHHHHHHCCCCEE-----------EEEE-CCHHHHHH-HHHHHCCEEEECCEEEEEEECCCHHHHHHHHC
T ss_conf 68999999986288457-----------7532-24778875-33442470555787888211188788888633
No 109
>pfam06764 DUF1223 Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown.
Probab=74.18 E-value=7 Score=19.27 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=24.1
Q ss_pred HCCCC--CCCEEEECCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 61885--365799898996189999999999999999
Q gi|254780477|r 193 DFAID--STPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227 (232)
Q Consensus 193 ~~gi~--gTPt~~VnG~~~~g~~~~~~~~~~id~ll~ 227 (232)
+.|.+ -||-++|||+......+.+.+...|+..-.
T Consensus 63 ~~~~~~vYTPQ~VVnG~~~~~g~~~~~v~~~i~~~~~ 99 (199)
T pfam06764 63 AFGLRGVYTPQMVVNGREHVVGSDRAAVAAAIAAAPA 99 (199)
T ss_pred HHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 7089998389689988010475698999999998651
No 110
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=73.22 E-value=4 Score=20.78 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=20.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 899997058882064433421134432
Q gi|254780477|r 67 VTMVEYASMTCFHCAEFHNKTFKYLED 93 (232)
Q Consensus 67 v~ivef~D~~Cp~C~~~~~~~~~~l~~ 93 (232)
.+|+.|+...|+.|+.+.+.+.....+
T Consensus 26 ~VvV~f~~~~~~~C~~l~~~l~~lA~~ 52 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAK 52 (113)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 799999789994478998999998632
No 111
>PRK13669 hypothetical protein; Provisional
Probab=71.88 E-value=7.4 Score=19.11 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=27.3
Q ss_pred CCCCCEEEECCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 8536579989899618999999999999999986
Q gi|254780477|r 196 IDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQDS 229 (232)
Q Consensus 196 i~gTPt~~VnG~~~~g~~~~~~~~~~id~ll~~~ 229 (232)
-.-+|--+|||+.+.|. +.+++...|.+.|++-
T Consensus 43 C~~~pfALVnGe~V~a~-t~EeL~~~I~~~Ieen 75 (78)
T PRK13669 43 CSEGLFALVNGEVVEGE-TPEELVENIYAHIEEN 75 (78)
T ss_pred HCCCCEEEECCEEEECC-CHHHHHHHHHHHHHHC
T ss_conf 21485358888688549-9999999999998627
No 112
>pfam07511 DUF1525 Protein of unknown function (DUF1525).
Probab=71.62 E-value=8 Score=18.89 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=25.5
Q ss_pred HHHHHCCCCCCCEEEECCEEEC-CCCCHHHHHHHHHH
Q ss_conf 9998618853657998989961-89999999999999
Q gi|254780477|r 189 RASEDFAIDSTPVFFIGGNLYL-GDMSEGVFSKIIDS 224 (232)
Q Consensus 189 ~~~~~~gi~gTPt~~VnG~~~~-g~~~~~~~~~~id~ 224 (232)
.+. .+||+-.|++++|++++. |..+...=...+++
T Consensus 75 ~Aw-slGi~kiPAVVfD~r~VVYG~~DV~~A~~~~~~ 110 (114)
T pfam07511 75 DAW-QLGITKIPAVVFDGRYVVYGTTDVARALALYAA 110 (114)
T ss_pred HHH-HCCCCCCCEEEECCCEEEECCCCHHHHHHHHHH
T ss_conf 999-717665786997485289668649999999999
No 113
>KOG0908 consensus
Probab=71.28 E-value=7 Score=19.25 Aligned_cols=33 Identities=9% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 898888999970588820644334211344320
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
..+.+..+|-|.--.|+.|+.-.|.....-.++
T Consensus 18 ~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY 50 (288)
T KOG0908 18 AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY 50 (288)
T ss_pred CCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 258618999987145532776605788765417
No 114
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.28 E-value=4.5 Score=20.45 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=15.7
Q ss_pred CCCCCEEEEEEECCCCCCHHHHH
Q ss_conf 89888899997058882064433
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFHCAEFH 84 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~C~~~~ 84 (232)
+-+.+.....|+++.|.-|-..-
T Consensus 113 ~i~g~~~FETy~SltC~nCPDVV 135 (520)
T COG3634 113 AIDGDFHFETYFSLTCHNCPDVV 135 (520)
T ss_pred HCCCCEEEEEEEEEECCCCHHHH
T ss_conf 25886048899986326886899
No 115
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=69.26 E-value=5.2 Score=20.09 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=18.5
Q ss_pred CCCCCCCEEEECCEEECCCCCHHHHHH
Q ss_conf 188536579989899618999999999
Q gi|254780477|r 194 FAIDSTPVFFIGGNLYLGDMSEGVFSK 220 (232)
Q Consensus 194 ~gi~gTPt~~VnG~~~~g~~~~~~~~~ 220 (232)
.|.+.+|.+||||+.+-| +++|.+
T Consensus 46 ~g~~TvPQIfi~g~~IGG---~~dL~~ 69 (72)
T cd03029 46 TGAMTVPQVFIDGELIGG---SDDLEK 69 (72)
T ss_pred CCCCEECEEEECCEEEEC---HHHHHH
T ss_conf 399722989999999978---999999
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=68.78 E-value=5.1 Score=20.13 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=22.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 888999970588820644334211344320
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
.+++++.|+-..||+|+...+.+....++.
T Consensus 32 ~~~~~~~f~~~~C~~C~~~~~~l~~~~~~~ 61 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEY 61 (127)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 871999953899942999999999999871
No 117
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=68.60 E-value=6.3 Score=19.55 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.6
Q ss_pred HCCCCCCCEEEECCEEECCCCCHHHHHHH
Q ss_conf 61885365799898996189999999999
Q gi|254780477|r 193 DFAIDSTPVFFIGGNLYLGDMSEGVFSKI 221 (232)
Q Consensus 193 ~~gi~gTPt~~VnG~~~~g~~~~~~~~~~ 221 (232)
..|...+|.+||||+.+-| ++++.++
T Consensus 45 ~~g~~tvPqIfi~g~~IGG---~~~l~~l 70 (72)
T cd02066 45 LSGWPTVPQIFINGEFIGG---YDDLKAL 70 (72)
T ss_pred HHCCCCCCEEEECCEEECC---HHHHHHH
T ss_conf 8499889959999989816---8999986
No 118
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=67.79 E-value=8.9 Score=18.58 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=22.4
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8888999970588820644334211344320
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
+.|+.|+.|=-+.||+|+..-..+.....+.
T Consensus 23 ~~~vvl~F~R~~~Cp~C~~~l~~l~~~~~~~ 53 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPEL 53 (149)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9979999977899942147198999889999
No 119
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=67.66 E-value=9.7 Score=18.36 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=23.7
Q ss_pred HHHHCCCCCCCEEEE--CCEEE---CCCCCHHHHHH
Q ss_conf 998618853657998--98996---18999999999
Q gi|254780477|r 190 ASEDFAIDSTPVFFI--GGNLY---LGDMSEGVFSK 220 (232)
Q Consensus 190 ~~~~~gi~gTPt~~V--nG~~~---~g~~~~~~~~~ 220 (232)
...++|+..+||+++ +|+++ .|-.+|+++.+
T Consensus 75 l~~rfgv~~~Pallf~r~G~~vg~i~gi~dW~eY~~ 110 (111)
T cd02965 75 LAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred HHHHHCCCCCCEEEEEECCEEEEEECCCCCHHHHHH
T ss_conf 999739754775999989988130325244998852
No 120
>pfam04214 DUF411 Protein of unknown function, DUF. The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=66.87 E-value=10 Score=18.26 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=25.5
Q ss_pred CCCCCCEEEECCEEECCCCCHHHHHHHHHH
Q ss_conf 885365799898996189999999999999
Q gi|254780477|r 195 AIDSTPVFFIGGNLYLGDMSEGVFSKIIDS 224 (232)
Q Consensus 195 gi~gTPt~~VnG~~~~g~~~~~~~~~~id~ 224 (232)
...+--|-+|+|..++|..+.+++++++.+
T Consensus 22 ~l~SCHTa~i~GY~iEGHVPa~~I~~lL~e 51 (70)
T pfam04214 22 ELASCHTAVVDGYVIEGHVPAADIKRLLAE 51 (70)
T ss_pred CCCCCCEEEEECEEEECCCCHHHHHHHHHC
T ss_conf 225667699825899874899999999964
No 121
>TIGR02183 GRXA Glutaredoxin, GrxA family; InterPro: IPR011902 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry includes the Escherichia coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase .; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=66.81 E-value=4.1 Score=20.73 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99970588820644334211344320000
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKYLEDKYIK 97 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~l~~~~~~ 97 (232)
++.|.-+.||||-+. .++.+.+.....|
T Consensus 2 v~IfGr~gC~YCVRA-~~LaEkl~~~~~D 29 (86)
T TIGR02183 2 VVIFGRPGCPYCVRA-KQLAEKLAEELAD 29 (86)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHHHCCC
T ss_conf 577327998402336-8889998864035
No 122
>pfam07293 DUF1450 Protein of unknown function (DUF1450). This family consists of several hypothetical bacterial proteins of around 80 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown.
Probab=66.33 E-value=10 Score=18.20 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCCCCEEEECCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 8536579989899618999999999999999986
Q gi|254780477|r 196 IDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQDS 229 (232)
Q Consensus 196 i~gTPt~~VnG~~~~g~~~~~~~~~~id~ll~~~ 229 (232)
-.-+|--+|||+.+.|. +++++.+.|.+.|++-
T Consensus 43 C~~~pfAlVnGe~V~a~-t~eeL~~~I~~~Ieen 75 (78)
T pfam07293 43 CAESLFALVNGEIVEGD-TPEELVENIYQFIEEN 75 (78)
T ss_pred HCCCCEEEECCEEEECC-CHHHHHHHHHHHHHHC
T ss_conf 30475138888578649-9999999999998516
No 123
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=66.26 E-value=5 Score=20.17 Aligned_cols=32 Identities=13% Similarity=0.356 Sum_probs=22.2
Q ss_pred HHHCCCCCCCEEEE----CCEEEC---CCCCHHHHHHHH
Q ss_conf 98618853657998----989961---899999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI----GGNLYL---GDMSEGVFSKII 222 (232)
Q Consensus 191 ~~~~gi~gTPt~~V----nG~~~~---g~~~~~~~~~~i 222 (232)
++++||+-||++++ +|+..+ |.++.+++..-|
T Consensus 198 a~~l~V~~~PAL~Lv~p~t~~~~Pva~G~iS~deL~~Ri 236 (247)
T PRK13703 198 AQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRF 236 (247)
T ss_pred HHHCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHH
T ss_conf 973698416569999889992887731127799999999
No 124
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=66.20 E-value=4.3 Score=20.58 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=16.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHH
Q ss_conf 8888999970588820644334
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHN 85 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~ 85 (232)
+=.+.+++|.||.=|-=+-...
T Consensus 58 G~~veiv~FsDy~~pN~AL~~G 79 (271)
T PRK11063 58 GLDVELVTFNDYVLPNEALSKG 79 (271)
T ss_pred CCEEEEEEECCCHHHHHHHHCC
T ss_conf 9768999936832155898679
No 125
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=65.74 E-value=8.6 Score=18.70 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=19.3
Q ss_pred CCCCCCCEEEECCEEECCCCCHHHHHHHH
Q ss_conf 18853657998989961899999999999
Q gi|254780477|r 194 FAIDSTPVFFIGGNLYLGDMSEGVFSKII 222 (232)
Q Consensus 194 ~gi~gTPt~~VnG~~~~g~~~~~~~~~~i 222 (232)
.|...+|.+||||+.+-| ++++.++-
T Consensus 47 ~~~~TvPqIfi~g~~IGG---~~~l~~l~ 72 (75)
T cd03418 47 GGRRTVPQIFIGDVHIGG---CDDLYALE 72 (75)
T ss_pred CCCCEECEEEECCEEEEC---HHHHHHHH
T ss_conf 899353979999979837---89999998
No 126
>KOG2501 consensus
Probab=65.36 E-value=11 Score=18.08 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=23.6
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98888999970588820644334211344320
Q gi|254780477|r 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 63 ~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
...++...-|.-..||.|+.|-+.+.+...+.
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l 62 (157)
T KOG2501 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEEL 62 (157)
T ss_pred HCCCEEEEEEEEEECCCHHHCCCHHHHHHHHH
T ss_conf 27868999988787783564886689999999
No 127
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=65.35 E-value=3.9 Score=20.88 Aligned_cols=17 Identities=12% Similarity=0.479 Sum_probs=15.0
Q ss_pred CEEEEEEE---CCCCCCHHH
Q ss_conf 88999970---588820644
Q gi|254780477|r 66 PVTMVEYA---SMTCFHCAE 82 (232)
Q Consensus 66 ~v~ivef~---D~~Cp~C~~ 82 (232)
.++-+.|+ .|.||||..
T Consensus 16 ~~a~~iF~~GCn~~CpyCHN 35 (220)
T TIGR02495 16 KLAFTIFFQGCNLKCPYCHN 35 (220)
T ss_pred CEEEEEEECCCCCCCCCCCC
T ss_conf 53688870278899878888
No 128
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=65.11 E-value=11 Score=18.12 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred HCCCCCCCEEEECCEEECCCCCHHHHHHHH
Q ss_conf 618853657998989961899999999999
Q gi|254780477|r 193 DFAIDSTPVFFIGGNLYLGDMSEGVFSKII 222 (232)
Q Consensus 193 ~~gi~gTPt~~VnG~~~~g~~~~~~~~~~i 222 (232)
..|...+|.+||||+.+-| ++++.++.
T Consensus 48 ~~g~~TvPqIfi~g~~IGG---~~~l~~l~ 74 (82)
T cd03419 48 LTGQRTVPNVFIGGKFIGG---CDDLMALH 74 (82)
T ss_pred HCCCCCCCEEEECCEEECC---HHHHHHHH
T ss_conf 4399988869999989847---89999999
No 129
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=64.34 E-value=6.6 Score=19.42 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=16.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHH
Q ss_conf 8888999970588820644334
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHN 85 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~ 85 (232)
+=.+.|+||.||.-|--+-...
T Consensus 56 Gi~l~i~~FtDY~~PN~AL~~g 77 (268)
T COG1464 56 GLDLKIVEFTDYVQPNEALADG 77 (268)
T ss_pred CCEEEEEEECCCCCHHHHHHCC
T ss_conf 9659999814876655787668
No 130
>PRK02244 DNA-directed RNA polymerase subunit P; Provisional
Probab=63.77 E-value=3 Score=21.56 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=15.8
Q ss_pred CCEEEEEEECCCCCCHHH
Q ss_conf 888999970588820644
Q gi|254780477|r 65 APVTMVEYASMTCFHCAE 82 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~ 82 (232)
-+|+|.+|....||||.+
T Consensus 10 ~~Veid~y~gvRCpyCGH 27 (44)
T PRK02244 10 RKVEIDEYGGVRCPYCGH 27 (44)
T ss_pred CEEEEECCCCCCCCCCCC
T ss_conf 457763126671786563
No 131
>TIGR02049 gshA_ferroox glutamate--cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase..
Probab=63.22 E-value=12 Score=17.83 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEE---CCEE---ECCCCCHHHHHHH
Q ss_conf 9999999999998618853657998---9899---6189999999999
Q gi|254780477|r 180 LDDIKAGKKRASEDFAIDSTPVFFI---GGNL---YLGDMSEGVFSKI 221 (232)
Q Consensus 180 ~~~i~~~~~~~~~~~gi~gTPt~~V---nG~~---~~g~~~~~~~~~~ 221 (232)
.+.|.+.++.-.+.|||.-+|-+|| +|+| +-...+.+|+..+
T Consensus 244 Vd~vL~~~~~kY~eYgI~~~Pyv~vKAdaGTYGMGimTa~sgeE~l~L 291 (436)
T TIGR02049 244 VDQVLSKVQKKYEEYGIHEKPYVIVKADAGTYGMGIMTAKSGEEVLGL 291 (436)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHCC
T ss_conf 999999999988755875687589970788745505884263785425
No 132
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=62.82 E-value=8.9 Score=18.58 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCCCEEEECCEEECCCCCHHHHHHHHHHH
Q ss_conf 853657998989961899999999999999
Q gi|254780477|r 196 IDSTPVFFIGGNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 196 i~gTPt~~VnG~~~~g~~~~~~~~~~id~l 225 (232)
-.--|.+.|||+.+. ..+.+.+.++|++|
T Consensus 52 C~~aP~~~Vn~~~y~-~lt~ek~~~il~~L 80 (80)
T cd03081 52 CACSPAAMIDGEVHG-RVDPEKFDALLAEL 80 (80)
T ss_pred CCCCCEEEECCEEEC-CCCHHHHHHHHHCC
T ss_conf 799997999999856-88999999999709
No 133
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative; InterPro: IPR005985 Class II bacteriocins are small are ribosomally-synthesized, non-lantibiotic peptide antibiotics produced by many bacteria . This entry represents a protein encoded within a number of operons responsible for class II bacteriocin production , , . It is generally the third protein in the operon and, together with the fourth protein, is responsible for transport to the extracellular environment . .
Probab=62.73 E-value=3 Score=21.62 Aligned_cols=26 Identities=19% Similarity=0.352 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99970588820644334211344320
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
+.-..--.||||++|.+.+...+.+.
T Consensus 27 ~~~~g~~~c~~c~~f~~~~~~~~~~~ 52 (122)
T TIGR01295 27 FLFIGFKTCPYCRKFSGTLSGFLAQS 52 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 89850432400234434555543103
No 134
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=62.66 E-value=12 Score=17.76 Aligned_cols=38 Identities=13% Similarity=0.387 Sum_probs=28.9
Q ss_pred HHHCCCCCCCEEEE----CCE---EECCCCCHHHHHHHHHHHHHH
Q ss_conf 98618853657998----989---961899999999999999998
Q gi|254780477|r 191 SEDFAIDSTPVFFI----GGN---LYLGDMSEGVFSKIIDSMIQD 228 (232)
Q Consensus 191 ~~~~gi~gTPt~~V----nG~---~~~g~~~~~~~~~~id~ll~~ 228 (232)
++.+.+.++|++.| .|+ .+.|..++++|.+-+.+.|++
T Consensus 69 ~~~y~~~~~P~i~iidp~tge~v~~~~G~~~p~~~l~~L~~~~~~ 113 (114)
T cd02958 69 LQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred HHHCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 986699998979999789995998986899989999999999960
No 135
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=62.33 E-value=9.9 Score=18.30 Aligned_cols=27 Identities=19% Similarity=0.485 Sum_probs=22.0
Q ss_pred CCCEEEECCEEECCCCCHHHHHHHHHHH
Q ss_conf 3657998989961899999999999999
Q gi|254780477|r 198 STPVFFIGGNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 198 gTPt~~VnG~~~~g~~~~~~~~~~id~l 225 (232)
--|.+.|||+.+. ..+++.+.++|+.+
T Consensus 54 ~aP~v~In~~~~~-~vt~e~v~~ii~~l 80 (80)
T cd03064 54 LAPVMMINDDVYG-RLTPEKVDAILEAL 80 (80)
T ss_pred CCCEEEECCEEEC-CCCHHHHHHHHHHC
T ss_conf 9997999999877-88999999999739
No 136
>TIGR02200 GlrX_actino Glutaredoxin-like protein; InterPro: IPR011915 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif..
Probab=61.92 E-value=4.2 Score=20.66 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9997058882064433421
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKT 87 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~ 87 (232)
|..|.--.||||+.+...+
T Consensus 2 ~~vY~~~WCgyC~~l~~~L 20 (78)
T TIGR02200 2 VTVYATTWCGYCAQLMRTL 20 (78)
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 0464069980678998753
No 137
>TIGR02180 GRX_euk Glutaredoxin; InterPro: IPR011899 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry is found in eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=61.84 E-value=9.9 Score=18.29 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHCCCCCCCEEEECCEEECCCCCHHHHH
Q ss_conf 8618853657998989961899999999
Q gi|254780477|r 192 EDFAIDSTPVFFIGGNLYLGDMSEGVFS 219 (232)
Q Consensus 192 ~~~gi~gTPt~~VnG~~~~g~~~~~~~~ 219 (232)
+.-|.+.+|-+||||+-+-|.-++..+.
T Consensus 49 ~~TG~~TVP~iFi~g~~iGG~~D~~~~~ 76 (85)
T TIGR02180 49 EITGQRTVPNIFINGKFIGGCSDLLALD 76 (85)
T ss_pred HHCCCCCCCCEEECCEEECCCHHHHHHH
T ss_conf 8448923882656885767824556541
No 138
>pfam00462 Glutaredoxin Glutaredoxin.
Probab=61.24 E-value=11 Score=18.09 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=13.3
Q ss_pred HCCCCCCCEEEECCEEE
Q ss_conf 61885365799898996
Q gi|254780477|r 193 DFAIDSTPVFFIGGNLY 209 (232)
Q Consensus 193 ~~gi~gTPt~~VnG~~~ 209 (232)
..|...+|.++|||+.+
T Consensus 44 ~~g~~tvPqI~i~g~~i 60 (60)
T pfam00462 44 LSGWRTVPQVFIDGEHI 60 (60)
T ss_pred HHCCCCCCEEEECCEEC
T ss_conf 82999819798899999
No 139
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=61.02 E-value=6.5 Score=19.47 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=17.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 88889999705888206443342113
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFK 89 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~ 89 (232)
+-|+-++.+.+ .|++|+.+.+.+.+
T Consensus 19 ~KPiml~~~~~-wC~~Ck~mk~~f~e 43 (117)
T cd02959 19 GKPLMLLIHKT-WCGACKALKPKFAE 43 (117)
T ss_pred CCCEEEEECCC-CCHHHHHHHHHHHH
T ss_conf 99999997321-17679999999861
No 140
>pfam06953 ArsD Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.
Probab=59.56 E-value=14 Score=17.42 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=36.4
Q ss_pred HHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEC-C-CCCHHHHHHHHH
Q ss_conf 64311000068898640598999999999999998618853657998989961-8-999999999999
Q gi|254780477|r 158 NMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL-G-DMSEGVFSKIID 223 (232)
Q Consensus 158 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~-g-~~~~~~~~~~id 223 (232)
++++..|+....++-.- ....-.-+.......+..|..+=|-++|||+.+. | +++.++|.+...
T Consensus 34 ~~lk~~gv~v~R~NL~~--~P~~F~~N~~V~~~L~~~G~e~LPitlVDGeIv~~G~YPt~eEla~w~g 99 (119)
T pfam06953 34 DWLKQNGVEVERYNLAQ--QPMAFAENAVVKAFLETSGAEGLPLTLVDGEIVKTGRYPTREELARWAG 99 (119)
T ss_pred HHHHHCCCEEEECCCCC--CHHHHHHCHHHHHHHHHCCCCCCCEEEECCEEEEECCCCCHHHHHHHHC
T ss_conf 99996794799716632--8799972799999999749654888999899988156999999999969
No 141
>KOG3425 consensus
Probab=56.37 E-value=10 Score=18.26 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 588820644334211344320000
Q gi|254780477|r 74 SMTCFHCAEFHNKTFKYLEDKYIK 97 (232)
Q Consensus 74 D~~Cp~C~~~~~~~~~~l~~~~~~ 97 (232)
--.||.|.+.++-+...++....+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~ 65 (128)
T KOG3425 42 QSWCPDCVAAEPVINEALKHAPED 65 (128)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 837821877638999999738776
No 142
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=55.91 E-value=16 Score=17.04 Aligned_cols=27 Identities=22% Similarity=0.601 Sum_probs=22.7
Q ss_pred CCCEEEECCEEECCCCCHHHHHHHHHHH
Q ss_conf 3657998989961899999999999999
Q gi|254780477|r 198 STPVFFIGGNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 198 gTPt~~VnG~~~~g~~~~~~~~~~id~l 225 (232)
--|.+.|||+.+ |..+.+.+.++|+.+
T Consensus 127 ~aP~~~Vn~~~~-~~lt~e~v~~il~~l 153 (154)
T PRK07539 127 NAPVVMINDDTY-EDLTPEKIDELLDEL 153 (154)
T ss_pred CCCEEEECCEEE-CCCCHHHHHHHHHHC
T ss_conf 999699999987-789999999999981
No 143
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=53.56 E-value=17 Score=16.82 Aligned_cols=29 Identities=17% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCCCCEEEECCEEECCCCCHHHHHHHHHHH
Q ss_conf 853657998989961899999999999999
Q gi|254780477|r 196 IDSTPVFFIGGNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 196 i~gTPt~~VnG~~~~g~~~~~~~~~~id~l 225 (232)
-..-|.+.||++.+. ..+++.+.++||.+
T Consensus 52 C~~aP~~~Vn~~~~~-~lT~ekv~~ile~~ 80 (80)
T cd03083 52 CDQGPALLINNRVFT-RLTPGRIDQIAELI 80 (80)
T ss_pred CCCCCEEEECCEEEC-CCCHHHHHHHHHHC
T ss_conf 789996999999747-88989999999639
No 144
>TIGR02652 TIGR02652 conserved hypothetical protein TIGR02652; InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N-terminus..
Probab=53.28 E-value=4.5 Score=20.46 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=10.8
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 58882064433421
Q gi|254780477|r 74 SMTCFHCAEFHNKT 87 (232)
Q Consensus 74 D~~Cp~C~~~~~~~ 87 (232)
+-.||||++.-+.+
T Consensus 10 eI~CPHCRQ~i~AL 23 (172)
T TIGR02652 10 EIRCPHCRQIIAAL 23 (172)
T ss_pred CCCCCCCCCCHHHH
T ss_conf 45588543400233
No 145
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=51.58 E-value=16 Score=17.05 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-------------------------HHHCCHHHHHHHH
Q ss_conf 124558888886543321134568998764311000068898-------------------------6405989999999
Q gi|254780477|r 130 GGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFD-------------------------TCLNDQNILDDIK 184 (232)
Q Consensus 130 ~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~-------------------------~~~~~~~~~~~i~ 184 (232)
.........+...|...+ +...+.+..++..+|+....+. .|...+ .+.+.
T Consensus 22 ~~rsAlip~L~~aQ~~~G--~l~~~ai~~iA~~L~i~~~~v~~VaTFY~~f~~~P~Gr~~i~VC~~t~C~l~G--s~~l~ 97 (160)
T COG1905 22 DKRSALIPLLHIAQEQFG--WLPPEAIEEIADMLGIPRARVYGVATFYTQFFLKPVGRHHIRVCTGTACHLKG--SEALL 97 (160)
T ss_pred CCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHCCCHHHHEEEEEEEHHHCCCCCCCEEEEEECCCHHHHCC--HHHHH
T ss_conf 524378899999999858--88878999999985999788310144101213576887489980885776517--69999
Q ss_pred HHHHHHHH--------H-----------CCCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998--------6-----------18853657998989961899999999999999998
Q gi|254780477|r 185 AGKKRASE--------D-----------FAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQD 228 (232)
Q Consensus 185 ~~~~~~~~--------~-----------~gi~gTPt~~VnG~~~~g~~~~~~~~~~id~ll~~ 228 (232)
+.-+.... . -.-..-|.+.|||+.+.+ .+++.+.++|+.+..+
T Consensus 98 ~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmind~~~~~-lt~e~l~eil~~~~~~ 159 (160)
T COG1905 98 KALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMINDDVYGR-LTPEKLEEILEKLKAK 159 (160)
T ss_pred HHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEECCCCCCC-CCHHHHHHHHHHHHCC
T ss_conf 9999984899897188974887631051454669779998850233-8999999999997627
No 146
>TIGR01355 cyt_deam_dimer cytidine deaminase; InterPro: IPR006263 Cytidine deaminase is a homodimeric zinc metalloprotein found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals, IPR006262 from INTERPRO. Both types may act on deoxycytidine as well as cytidine. ; GO: 0004126 cytidine deaminase activity, 0046087 cytidine metabolic process.
Probab=51.30 E-value=8.2 Score=18.83 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.5
Q ss_pred EEECCCCCCHHHHHHHHHHH
Q ss_conf 97058882064433421134
Q gi|254780477|r 71 EYASMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 71 ef~D~~Cp~C~~~~~~~~~~ 90 (232)
.+|+-=||||++|-.|+...
T Consensus 103 ~~F~~PCghCrQFl~E~~~A 122 (311)
T TIGR01355 103 SVFAAPCGHCRQFLNEIRNA 122 (311)
T ss_pred EECCCCCCCHHHHHHHHCCH
T ss_conf 34488785177899860583
No 147
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=51.15 E-value=17 Score=16.77 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCHHHHHH--HHHHHHHH
Q ss_conf 987643110000688986405989999999999999986188536579989899618999999999--99999998
Q gi|254780477|r 155 ALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSK--IIDSMIQD 228 (232)
Q Consensus 155 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~~--~id~ll~~ 228 (232)
....+.+..++.-.+-+-.| +....+.+..- +....+-...|.+||+|+++-|.-....+.. -++.+|+.
T Consensus 21 ~vr~iL~~~~V~~~ERDVsm-~~~~r~EL~~~---lg~~~~~~tvPqvFi~g~~vGG~dev~~L~e~G~L~~lL~g 92 (147)
T cd03031 21 NVRAILESFRVKFDERDVSM-DSGFREELREL---LGAELKAVSLPRVFVDGRYLGGAEEVLRLNESGELRKLLKG 92 (147)
T ss_pred HHHHHHHHCCCEEEEEECCC-CHHHHHHHHHH---HCCCCCCCCCCEEEECCEEECCHHHHHHHHHCCCHHHHHHH
T ss_conf 99999997890799983458-98799999999---71457899999698899998789999999976969998502
No 148
>pfam05605 Di19 Drought induced 19 protein (Di19). This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. The precise function of Di19 is unknown.
Probab=50.53 E-value=4.9 Score=20.26 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=11.6
Q ss_pred EEECCCCCCHHHHHH
Q ss_conf 970588820644334
Q gi|254780477|r 71 EYASMTCFHCAEFHN 85 (232)
Q Consensus 71 ef~D~~Cp~C~~~~~ 85 (232)
...+|-||||+.=+.
T Consensus 31 ~r~efpCPFCyedfD 45 (210)
T pfam05605 31 VREEFPCPFCYEDFD 45 (210)
T ss_pred CHHCCCCCCCCCHHH
T ss_conf 000377997632124
No 149
>KOG3286 consensus
Probab=49.47 E-value=20 Score=16.39 Aligned_cols=134 Identities=15% Similarity=0.163 Sum_probs=65.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q ss_conf 999970588820644334211344320000203799843323430245777666666665-------3212455888888
Q gi|254780477|r 68 TMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKR-------MDGGYWGFVSLLF 140 (232)
Q Consensus 68 ~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ 140 (232)
|+..++-++|.|=+.| .+....+++.|.. +.++.-.++..... ...|...-+..- ....-+++.
T Consensus 71 tl~i~fCvSCgYk~af-~~~~~~l~ekyPg---l~IegaNy~Pp~~k-r~lAk~v~v~k~gvIglii~G~~pF~~i---- 141 (226)
T KOG3286 71 TLEINFCVSCGYKQAF-EQYKKFLKEKYPG---LDIEGANYPPPAWK-RYLAKVVSVVKMGVIGLIIGGKNPFEFI---- 141 (226)
T ss_pred CEEEEEEEECCCHHHH-HHHHHHHHHHCCC---CEEECCCCCCCHHH-HHHHHHHHHHHHEEEEEEECCCCCCCEE----
T ss_conf 1799999863747899-9999999844899---64225868992389-9999998887410378896267751100----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEEC-----C-CCC
Q ss_conf 6543321134568998764311000068898640598999999999999998618853657998989961-----8-999
Q gi|254780477|r 141 NKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL-----G-DMS 214 (232)
Q Consensus 141 ~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~-----g-~~~ 214 (232)
+..... ..+.+. .+++..|+.--- ..|.-+. .+--+|-=-+..||+++- | -++
T Consensus 142 --------Gl~~P~-iwqh~~-----aNkf~scm~vf~-----lGN~les--~L~StGAFEI~lndepVwSKl~~gr~Ps 200 (226)
T KOG3286 142 --------GLGYPS-IWQHAQ-----ANKFYSCMMVFF-----LGNMLES--QLISTGAFEITLNDEPVWSKLESGRLPS 200 (226)
T ss_pred --------CCCCCH-HHHHHH-----HHHHHHHHHHHH-----HHHHHHH--HHHCCCCEEEEECCEEEEEHHHCCCCCC
T ss_conf --------578968-999987-----635999999999-----9999999--8621673799989986220421267898
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999998603
Q gi|254780477|r 215 EGVFSKIIDSMIQDSTR 231 (232)
Q Consensus 215 ~~~~~~~id~ll~~~~~ 231 (232)
..+|..+||..|+.-.|
T Consensus 201 ~~el~qlid~~L~~~~~ 217 (226)
T KOG3286 201 PQELVQLIDNQLKLNVK 217 (226)
T ss_pred HHHHHHHHHHHHHHEEE
T ss_conf 89999999976545020
No 150
>PRK09027 cytidine deaminase; Provisional
Probab=49.09 E-value=13 Score=17.50 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=17.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 8889999705888206443342113
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNKTFK 89 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~~~~ 89 (232)
..++-+....-=|+||++|..++..
T Consensus 117 ~~l~~iaVn~~PCGHCRQFmnEL~~ 141 (295)
T PRK09027 117 KGIADITVNYTPCGHCRQFMNELNS 141 (295)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCC
T ss_conf 5530688505774578999986378
No 151
>pfam03227 GILT Gamma interferon inducible lysosomal thiol reductase (GILT). This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=47.43 E-value=21 Score=16.19 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=24.6
Q ss_pred EEEEEEECCCCCCHHHHHH-HHHHHHHH-HCCCCCEEEEEECC
Q ss_conf 8999970588820644334-21134432-00002037998433
Q gi|254780477|r 67 VTMVEYASMTCFHCAEFHN-KTFKYLED-KYIKTGKLRYILRE 107 (232)
Q Consensus 67 v~ivef~D~~Cp~C~~~~~-~~~~~l~~-~~~~~~~~~~~~~~ 107 (232)
|.|..|..=.||+|+.|-. ++.|.+.. ...+...+.+++..
T Consensus 1 V~v~vYyEslCP~~~~Fi~~qL~p~~~~~~~~~~~~l~lvPyG 43 (109)
T pfam03227 1 VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFG 43 (109)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 9799999766865889999961778751455343589999538
No 152
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=46.60 E-value=21 Score=16.24 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHH
Q ss_conf 8888999970588820644334
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHN 85 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~ 85 (232)
+=.+.|++|.||.=|-=+-...
T Consensus 59 G~~leiv~FsDy~~PN~AL~~G 80 (272)
T PRK09861 59 GLDVELVGFSGSLLPNDATNHG 80 (272)
T ss_pred CCEEEEEEECCCCCHHHHHHCC
T ss_conf 9768999946862262897679
No 153
>pfam06110 DUF953 Eukaryotic protein of unknown function (DUF953). This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=45.15 E-value=18 Score=16.73 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=19.1
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 058882064433421134432000
Q gi|254780477|r 73 ASMTCFHCAEFHNKTFKYLEDKYI 96 (232)
Q Consensus 73 ~D~~Cp~C~~~~~~~~~~l~~~~~ 96 (232)
...-||.|.+.++.+...+++...
T Consensus 34 G~SWCPDCv~AePvi~~~f~~~~~ 57 (119)
T pfam06110 34 GESWCPDCVRAEPVIREALKHAPE 57 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 793690076614889999983888
No 154
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=44.86 E-value=23 Score=15.94 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=20.1
Q ss_pred HHCCCCCCCEEEECCEEECCCCCHHHHHHHH
Q ss_conf 8618853657998989961899999999999
Q gi|254780477|r 192 EDFAIDSTPVFFIGGNLYLGDMSEGVFSKII 222 (232)
Q Consensus 192 ~~~gi~gTPt~~VnG~~~~g~~~~~~~~~~i 222 (232)
+..|-+-+|-+||||+.+-| .+++.++-
T Consensus 57 ~~s~~~TvPqifi~g~~IGG---~D~l~~l~ 84 (90)
T cd03028 57 EYSNWPTFPQLYVNGELVGG---CDIVKEMH 84 (90)
T ss_pred HHCCCCCCCCEEECCEEECC---HHHHHHHH
T ss_conf 97168988837799987866---69999999
No 155
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=43.38 E-value=24 Score=15.90 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=5.7
Q ss_pred HHCCCCCCCEEEE
Q ss_conf 8618853657998
Q gi|254780477|r 192 EDFAIDSTPVFFI 204 (232)
Q Consensus 192 ~~~gi~gTPt~~V 204 (232)
+++|..-+|+|-|
T Consensus 208 ~kLgF~~~p~f~v 220 (547)
T TIGR03103 208 EKLGFRRIPVFAL 220 (547)
T ss_pred HHHCCEECCEEEE
T ss_conf 9719755645788
No 156
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=43.07 E-value=25 Score=15.77 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE---CCEE-ECCCCCHHHHHHHHHHH
Q ss_conf 898640598999999999999998618853657998---9899-61899999999999999
Q gi|254780477|r 169 DFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI---GGNL-YLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 169 ~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V---nG~~-~~g~~~~~~~~~~id~l 225 (232)
.|...-......+++.+..+.+.+ ...|-+++ +|-. .+|..+.-++.+..-.+
T Consensus 134 ~F~GGSmG~~~GEki~~a~e~A~~----~~~PlI~~~~SGGaRMQEGi~SLmQMaKts~A~ 190 (288)
T PRK05654 134 SFMGGSMGSVVGEKIVRAVERALE----EKCPLVIFSASGGARMQEGLLSLMQMAKTSAAL 190 (288)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHH----CCCCEEEEECCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 454266457899999999999997----499789996787633327467899889999999
No 157
>pfam09654 DUF2396 Protein of unknown function (DUF2396). These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N-terminus.
Probab=42.82 E-value=7.9 Score=18.91 Aligned_cols=14 Identities=21% Similarity=0.524 Sum_probs=10.6
Q ss_pred CCCCCCHHHHHHHH
Q ss_conf 58882064433421
Q gi|254780477|r 74 SMTCFHCAEFHNKT 87 (232)
Q Consensus 74 D~~Cp~C~~~~~~~ 87 (232)
.-.||||++.-+.+
T Consensus 6 ei~CPhCRq~ipAL 19 (161)
T pfam09654 6 EIQCPHCRQTIPAL 19 (161)
T ss_pred CCCCCHHHCCCCHH
T ss_conf 46591563315120
No 158
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=42.72 E-value=25 Score=15.74 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 8888999970588820644334211344320000203799843
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILR 106 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~ 106 (232)
..+.+|+.|.+=.|.-|--....+. +...+.+.+-+-|+
T Consensus 40 k~~~VVELfTSQGCsSCPPAd~~l~----k~a~~~~vlALsyh 78 (261)
T COG5429 40 KPLGVVELFTSQGCSSCPPADANLA----KLADDPGVLALSYH 78 (261)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH----HHCCCCCEEEEEEE
T ss_conf 8855899862488677985779999----85248887999974
No 159
>pfam01257 Complex1_24kDa Respiratory-chain NADH dehydrogenase 24 Kd subunit.
Probab=42.56 E-value=25 Score=15.72 Aligned_cols=27 Identities=26% Similarity=0.665 Sum_probs=22.0
Q ss_pred CCCEEEECCEEECCCCCHHHHHHHHHHH
Q ss_conf 3657998989961899999999999999
Q gi|254780477|r 198 STPVFFIGGNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 198 gTPt~~VnG~~~~g~~~~~~~~~~id~l 225 (232)
--|.+.|||+.+ |..+.+.+.++|+++
T Consensus 118 ~AP~~~Vn~~~~-~~lt~~k~~~il~~l 144 (145)
T pfam01257 118 NAPVMQINDDYY-GDLTPEKVDEILEAL 144 (145)
T ss_pred CCCEEEECCEEE-CCCCHHHHHHHHHHC
T ss_conf 999699999976-789999999999972
No 160
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=42.52 E-value=20 Score=16.34 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=18.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 58882064433421134432000
Q gi|254780477|r 74 SMTCFHCAEFHNKTFKYLEDKYI 96 (232)
Q Consensus 74 D~~Cp~C~~~~~~~~~~l~~~~~ 96 (232)
..-||.|.+.++.+...++....
T Consensus 37 ~SWCPDCv~AePvv~~~~~~~~~ 59 (119)
T cd02952 37 QSWCPDCVKAEPVVREALKAAPE 59 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 94790087716899999971898
No 161
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=42.34 E-value=26 Score=15.70 Aligned_cols=27 Identities=7% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCEEEECCEEECCCCCHHHHHHHHHHH
Q ss_conf 3657998989961899999999999999
Q gi|254780477|r 198 STPVFFIGGNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 198 gTPt~~VnG~~~~g~~~~~~~~~~id~l 225 (232)
--|.+.|||+.+. ..+.+.+.++|+++
T Consensus 128 ~AP~~~Vn~~~~~-~lt~ekv~~il~~l 154 (156)
T PRK05988 128 CSPAAMLDGEVHG-RLDPQRLDALLAEA 154 (156)
T ss_pred CCCEEEECCEEEC-CCCHHHHHHHHHHH
T ss_conf 9996999999657-89999999999996
No 162
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=40.64 E-value=27 Score=15.54 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=18.9
Q ss_pred CEEEEEEE-CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88999970-588820644334211344320
Q gi|254780477|r 66 PVTMVEYA-SMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 66 ~v~ivef~-D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
+.+|+.|+ .-.||+|....+.+.+...+.
T Consensus 23 k~vvl~f~p~~~~p~C~~e~~~~~~~~~~~ 52 (140)
T cd02971 23 KWVVLFFYPKDFTPVCTTELCAFRDLAEEF 52 (140)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 949999999988999614468899998875
No 163
>TIGR01926 peroxid_rel uncharacterized peroxidase-related enzyme; InterPro: IPR010195 Members of this family are conserved hypothetical proteins of around 200 amino acids in length. Many of them contain an akylhydroperoxidase (AhpD) domain. .
Probab=39.19 E-value=27 Score=15.50 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHHHHHC
Q ss_conf 88206443342113443200
Q gi|254780477|r 76 TCFHCAEFHNKTFKYLEDKY 95 (232)
Q Consensus 76 ~Cp~C~~~~~~~~~~l~~~~ 95 (232)
.|-||...|..-...+.+..
T Consensus 79 ~C~YCa~~H~~~~~~~~g~~ 98 (179)
T TIGR01926 79 GCVYCAAVHAARLRQLSGDP 98 (179)
T ss_pred HHHHHHHHHHHHHHHHHCCH
T ss_conf 25888987999999870898
No 164
>pfam11287 DUF3088 Protein of unknown function (DUF3088). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=38.79 E-value=17 Score=16.78 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 8882064433421134432000020379984332343
Q gi|254780477|r 75 MTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLD 111 (232)
Q Consensus 75 ~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 111 (232)
|.||||...+-- +..+..-...+-+.+..++..
T Consensus 21 f~Cp~c~~iEGl----La~~P~l~~~ldV~rV~f~RP 53 (111)
T pfam11287 21 FYCPDCAAIEGL----LASFPALAERLDVERVDFPRP 53 (111)
T ss_pred EECCCHHHHHHH----HHHCCCHHHCCCEEEECCCCC
T ss_conf 767753766608----762810253111798178886
No 165
>KOG2703 consensus
Probab=38.59 E-value=10 Score=18.22 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=50.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99970588820644334211344320000203799843323430245777666666665321245588888865433211
Q gi|254780477|r 69 MVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWIN 148 (232)
Q Consensus 69 ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 148 (232)
=+...+|.||||..-..++...... ... -.++.++....... ...-.....+....... +.-+-.+.. .+
T Consensus 63 EvVimSF~CpHCG~kN~eiQ~a~~i--Q~~-Gvri~l~V~s~EDl-nRqVvkSe~Asi~IpEl-----dlEIP~~Sq-~G 132 (460)
T KOG2703 63 EVVIMSFECPHCGHKNNEIQSAEEI--QEG-GVRIELRVQSVEDL-NRQVVKSESASIEIPEL-----DLEIPAKSQ-KG 132 (460)
T ss_pred EEEEEEEECCCCCCCCCCCCCHHCC--CCC-CEEEEEEECCHHHH-HHHHHHCCCCEEECCCC-----EEECCCCCC-CC
T ss_conf 1056775457657754200301003--667-56899983667885-46765233415632422-----053246566-78
Q ss_pred HHHHHHH-HHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCE
Q ss_conf 3456899-876431100006889864059899999999999999861885365-7998989
Q gi|254780477|r 149 SKNYRDA-LLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTP-VFFIGGN 207 (232)
Q Consensus 149 ~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTP-t~~VnG~ 207 (232)
..++.+. |... ..|+...+-.....+++.+..|..-.... +...--++| |+++|+.
T Consensus 133 slTTVEGiL~r~--~d~LsqdQekRr~~~pa~a~~Id~fi~kl-~s~k~~~~pftlildDp 190 (460)
T KOG2703 133 SLTTVEGILERV--IDGLSQDQEKRRITDPATAKQIDDFIVKL-KSLKELTTPFTLILDDP 190 (460)
T ss_pred CEEEHHHHHHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHCCCCEEEEECCC
T ss_conf 422369999999--98876433343156778899999999998-88761388638982387
No 166
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=38.05 E-value=30 Score=15.28 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=18.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211344320
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
++.+.-|---.||+|....+.+.+...+.
T Consensus 30 ~vvl~F~p~~~cp~C~~e~~~~~~~~~~~ 58 (149)
T cd03018 30 PVVLVFFPLAFTPVCTKELCALRDSLELF 58 (149)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 09999988889997587898888888876
No 167
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=37.82 E-value=26 Score=15.65 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHH-HHCCHHHHHHHHHHHHH-----------------------------HHHHCCC--
Q ss_conf 345689987643110000688986-40598999999999999-----------------------------9986188--
Q gi|254780477|r 149 SKNYRDALLNMAKFAGFSKNDFDT-CLNDQNILDDIKAGKKR-----------------------------ASEDFAI-- 196 (232)
Q Consensus 149 ~~~~~~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~i~~~~~~-----------------------------~~~~~gi-- 196 (232)
....+..+..++++.|+---.-.. |.- .....-|.+.... .++.++|
T Consensus 182 ~~q~~~v~~~la~~~GlFFFf~S~~C~~-C~~~~pil~~~~~~YG~~V~pvS~DG~PLp~G~FPn~~pD~G~a~~L~iGt 260 (306)
T TIGR02740 182 KKQKDRVLKELAKKSGLFFFFKSDDCPY-CHAQAPILKAFEDRYGIEVLPVSVDGGPLPGGKFPNARPDAGQAQKLKIGT 260 (306)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 8619999999740751689972788662-268999999999731970899984588878788888521403675404676
Q ss_pred -CCCCEEEE---CCE--EEC--CCCCHHHHHHHH
Q ss_conf -53657998---989--961--899999999999
Q gi|254780477|r 197 -DSTPVFFI---GGN--LYL--GDMSEGVFSKII 222 (232)
Q Consensus 197 -~gTPt~~V---nG~--~~~--g~~~~~~~~~~i 222 (232)
+-|||+++ .++ ... |.++.++|..-|
T Consensus 261 d~~VPA~~L~~p~p~~~~~igfG~~S~~~L~~Ri 294 (306)
T TIGR02740 261 DRTVPAVFLVDPKPNQITPIGFGVMSADELVDRI 294 (306)
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHH
T ss_conf 6546658999858990368740200388898887
No 168
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=37.66 E-value=30 Score=15.24 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=5.5
Q ss_pred EEECCCCCCHH
Q ss_conf 97058882064
Q gi|254780477|r 71 EYASMTCFHCA 81 (232)
Q Consensus 71 ef~D~~Cp~C~ 81 (232)
+||||.=-.=+
T Consensus 71 vyFdfd~~~l~ 81 (173)
T PRK10802 71 VYFDLDKYDIR 81 (173)
T ss_pred EEECCCCCCCC
T ss_conf 99158852169
No 169
>KOG1280 consensus
Probab=37.42 E-value=11 Score=17.97 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=12.8
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 58882064433421134
Q gi|254780477|r 74 SMTCFHCAEFHNKTFKY 90 (232)
Q Consensus 74 D~~Cp~C~~~~~~~~~~ 90 (232)
+|.||||..+.-...+.
T Consensus 79 SftCPyC~~~Gfte~~f 95 (381)
T KOG1280 79 SFTCPYCGIMGFTERQF 95 (381)
T ss_pred CCCCCCCCCCCCCHHHH
T ss_conf 42577655656556577
No 170
>TIGR02182 GRXB Glutaredoxin, GrxB family; InterPro: IPR011901 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family includes the highly abundant Escherichia coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase , and may have more to do with resistance to redox stress .; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity.
Probab=37.35 E-value=12 Score=17.75 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=6.5
Q ss_pred CCCCHHHHHH
Q ss_conf 8820644334
Q gi|254780477|r 76 TCFHCAEFHN 85 (232)
Q Consensus 76 ~Cp~C~~~~~ 85 (232)
.||||.+.--
T Consensus 7 HCPfCvrARm 16 (212)
T TIGR02182 7 HCPFCVRARM 16 (212)
T ss_pred CCCHHHHHHH
T ss_conf 6747899998
No 171
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent; InterPro: IPR004508 This enzyme, involved in the assimilation of inorganic sulphate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulphate (APS) over 3'-phosphoadenylylsulphate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement Escherichia coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.; GO: 0016671 oxidoreductase activity acting on sulfur group of donors disulfide as acceptor, 0019421 sulfate reduction APS pathway.
Probab=36.73 E-value=31 Score=15.15 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=21.1
Q ss_pred HHHCCCCCCCEEEECCEE------EC-CCCCHHHHHHHHHH
Q ss_conf 986188536579989899------61-89999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFIGGNL------YL-GDMSEGVFSKIIDS 224 (232)
Q Consensus 191 ~~~~gi~gTPt~~VnG~~------~~-g~~~~~~~~~~id~ 224 (232)
.+.+.+.+.||+++=-+. ++ ...+.+.+.+.+..
T Consensus 427 ~qelql~s~Ptil~fPk~~~~~ikyPse~rdv~sl~~f~n~ 467 (469)
T TIGR00424 427 KQELQLGSFPTILLFPKRSSRPIKYPSEKRDVDSLMSFVNL 467 (469)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 77542257663888026677654487200117899999986
No 172
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=36.38 E-value=11 Score=18.09 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 8820644334211344320
Q gi|254780477|r 76 TCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 76 ~Cp~C~~~~~~~~~~l~~~ 94 (232)
-|||||.-++...+.++..
T Consensus 384 lCp~Cke~y~a~~~~~~~~ 402 (495)
T TIGR02533 384 LCPHCKEPYEATDEELALL 402 (495)
T ss_pred CCCCCCCCCCCCHHHHHHC
T ss_conf 1514688899897999854
No 173
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=36.32 E-value=32 Score=15.11 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=17.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88999970588820644334211344320
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKTFKYLEDK 94 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~~~~l~~~ 94 (232)
++.|.-|-.-.||+|..-.+.+.+...+.
T Consensus 25 ~vvl~F~p~~~~p~C~~e~~~~~~~~~~~ 53 (140)
T cd03017 25 PVVLYFYPKDDTPGCTKEACDFRDLYEEF 53 (140)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 49999966878997889999999999998
No 174
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=35.98 E-value=23 Score=15.94 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCCCCEEEECCE--EECCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 853657998989--9618999999999999999986039
Q gi|254780477|r 196 IDSTPVFFIGGN--LYLGDMSEGVFSKIIDSMIQDSTRR 232 (232)
Q Consensus 196 i~gTPt~~VnG~--~~~g~~~~~~~~~~id~ll~~~~~~ 232 (232)
+.|.|-++.||+ .+....+.++|.+.|+++|+...+|
T Consensus 295 ~gg~~e~i~~g~~G~lv~~~d~~~la~ai~~ll~d~~~~ 333 (359)
T cd03823 295 IGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLL 333 (359)
T ss_pred CCCCHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHHH
T ss_conf 998175603798679989999999999999998499999
No 175
>pfam07449 HyaE Hydrogenase-1 expression protein HyaE. This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the E. coli protein HyaE, and the homologous proteins HoxO of R. eutropha and HupG of R. leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly.
Probab=35.94 E-value=30 Score=15.29 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHCCCCCCCEEEE--CCEEE---CCCCCHHH
Q ss_conf 98618853657998--98996---18999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNLY---LGDMSEGV 217 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~~---~g~~~~~~ 217 (232)
..++|+.-+|++++ +|+++ .|-.+|++
T Consensus 75 ~~rfgv~~~PaLvf~r~g~~lG~i~~i~dW~e 106 (107)
T pfam07449 75 AARFGVRRFPSLLFFRDGRYLGVLAGIRDWDE 106 (107)
T ss_pred HHHHCCCCCCEEEEEECCEEEEEECCCCCCCC
T ss_conf 99859754764899989968774535446565
No 176
>TIGR02189 GlrX-like_plant Glutaredoxin-like family; InterPro: IPR011905 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This group of glutaredoxin-like proteins is apparently limited to plants. Multiple isoforms are found in Arabidopsis thaliana and Oryza sativa..
Probab=35.68 E-value=29 Score=15.37 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=14.9
Q ss_pred CCCCCCEEEECCEEECCC
Q ss_conf 885365799898996189
Q gi|254780477|r 195 AIDSTPVFFIGGNLYLGD 212 (232)
Q Consensus 195 gi~gTPt~~VnG~~~~g~ 212 (232)
+-+..|.+||+||.+-|.
T Consensus 60 ~~~~vP~vFvGG~l~GG~ 77 (101)
T TIGR02189 60 CSPAVPVVFVGGKLVGGL 77 (101)
T ss_pred CCCCCCEEEECCEEECCC
T ss_conf 999987688088667572
No 177
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=35.13 E-value=33 Score=14.99 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=28.3
Q ss_pred CCCCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8853657998989961899999999999999998603
Q gi|254780477|r 195 AIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQDSTR 231 (232)
Q Consensus 195 gi~gTPt~~VnG~~~~g~~~~~~~~~~id~ll~~~~~ 231 (232)
.+.|.|-++-+|..+.-..+.+++...|..+|....+
T Consensus 300 ~vgG~~Evv~~~~~~~~~~d~~~la~~l~~ll~~~~~ 336 (398)
T cd03796 300 RVGGIPEVLPPDMILLAEPDVESIVRKLEEAISILRT 336 (398)
T ss_pred CCCCCCCEEECCCEEECCCCHHHHHHHHHHHHCCHHH
T ss_conf 8998611341893687489999999999999769999
No 178
>pfam11032 ApoM Apolipoprotein M (ApoM). ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide.
Probab=32.50 E-value=22 Score=16.05 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.7
Q ss_pred CCEEEEEEECCCCCCHHHHH
Q ss_conf 88899997058882064433
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFH 84 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~ 84 (232)
-|-++.+.||.+||+|=-.-
T Consensus 116 ~pd~~t~lfs~~CP~cIiLk 135 (186)
T pfam11032 116 RPDRKTLLFSANCPECIILK 135 (186)
T ss_pred CCCCEEEECCCCCCCEEEEE
T ss_conf 86510234368999648998
No 179
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=31.57 E-value=38 Score=14.63 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCCCCCEEEECCE---EECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8853657998989---96189999999999999999860
Q gi|254780477|r 195 AIDSTPVFFIGGN---LYLGDMSEGVFSKIIDSMIQDST 230 (232)
Q Consensus 195 gi~gTPt~~VnG~---~~~g~~~~~~~~~~id~ll~~~~ 230 (232)
.+.|+|.++.+|+ .++-..+.+++...|..+++...
T Consensus 341 ~~~g~~e~v~~~~~g~l~~~~~~~~~la~~i~~l~~~~~ 379 (407)
T cd04946 341 NVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred CCCCCHHHEECCCCEEEECCCCCHHHHHHHHHHHHHCHH
T ss_conf 799984123069827996899999999999999980999
No 180
>pfam09673 TrbC_Ftype Type-F conjugative transfer system pilin assembly protein. This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins is heterogeneous.
Probab=31.35 E-value=33 Score=15.01 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.3
Q ss_pred HHHHCCCCCCCEEEEC
Q ss_conf 9986188536579989
Q gi|254780477|r 190 ASEDFAIDSTPVFFIG 205 (232)
Q Consensus 190 ~~~~~gi~gTPt~~Vn 205 (232)
+.++++|+.+|+|++-
T Consensus 63 lF~~f~I~~VPa~V~~ 78 (113)
T pfam09673 63 LFRRYNITSVPAFVVV 78 (113)
T ss_pred HHHHCCCEECCEEEEE
T ss_conf 9966696163689998
No 181
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=30.74 E-value=17 Score=16.89 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=13.7
Q ss_pred HHHHHHHHHHCCCCCCCEEEE
Q ss_conf 999999998618853657998
Q gi|254780477|r 184 KAGKKRASEDFAIDSTPVFFI 204 (232)
Q Consensus 184 ~~~~~~~~~~~gi~gTPt~~V 204 (232)
.+..... +..|++=+|.++|
T Consensus 139 l~~l~~L-~e~~irvvpHiti 158 (275)
T COG1856 139 LRSLLLL-KENGIRVVPHITI 158 (275)
T ss_pred HHHHHHH-HHCCCEECEEEEE
T ss_conf 8899999-9709425305999
No 182
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=29.48 E-value=41 Score=14.42 Aligned_cols=21 Identities=10% Similarity=0.354 Sum_probs=16.1
Q ss_pred CEEEEEEE---CCCCCCHHHHHHH
Q ss_conf 88999970---5888206443342
Q gi|254780477|r 66 PVTMVEYA---SMTCFHCAEFHNK 86 (232)
Q Consensus 66 ~v~ivef~---D~~Cp~C~~~~~~ 86 (232)
.+..+.|+ .+.||||..++-.
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~ 58 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEIS 58 (260)
T ss_pred CEEEEEEECCCCCCCCCCCCHHHH
T ss_conf 449999878989989989794676
No 183
>KOG2846 consensus
Probab=29.47 E-value=11 Score=17.99 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999998
Q gi|254780477|r 215 EGVFSKIIDSMIQD 228 (232)
Q Consensus 215 ~~~~~~~id~ll~~ 228 (232)
...+.+++|.++.+
T Consensus 200 ~~a~DRI~d~lvGd 213 (328)
T KOG2846 200 RAAFDRILDYLVGD 213 (328)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 15888888987368
No 184
>pfam04475 DUF555 Protein of unknown function (DUF555). Family of uncharacterized, hypothetical archaeal proteins.
Probab=29.07 E-value=35 Score=14.82 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=18.6
Q ss_pred CCCCCEEEEEEECCCCCCHHHHH
Q ss_conf 89888899997058882064433
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFHCAEFH 84 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~C~~~~ 84 (232)
|++..-+=++-.+..||+|..-.
T Consensus 35 n~~l~~VeIevG~~~cP~Cge~~ 57 (102)
T pfam04475 35 NPKLDFVEIEVGSTACPKCGEEL 57 (102)
T ss_pred CCCCCEEEEECCCCCCCCCCCCC
T ss_conf 98988799825751088767866
No 185
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=29.03 E-value=36 Score=14.73 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.5
Q ss_pred EEEEEEECCCCCCHHHHHH
Q ss_conf 8999970588820644334
Q gi|254780477|r 67 VTMVEYASMTCFHCAEFHN 85 (232)
Q Consensus 67 v~ivef~D~~Cp~C~~~~~ 85 (232)
...+.++|=.||.|-.+-.
T Consensus 8 p~~vvlyDG~C~lC~~~vr 26 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVR 26 (137)
T ss_pred CCEEEEECCCCHHHHHHHH
T ss_conf 8789998896624799999
No 186
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.63 E-value=39 Score=14.53 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=25.4
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
Q ss_conf 89888899997058882064433421134432000020379984332343024
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS 114 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (232)
.++=.-+=++..+..||+|..-....+- . .....+..++...-+...+
T Consensus 37 ~~~LdyV~ie~G~t~CP~Cg~~~e~~fv--v---a~~aLVgl~l~mkVFNaes 84 (115)
T COG1885 37 KPDLDYVEIEVGSTSCPKCGEPFESAFV--V---ANTALVGLILSMKVFNAES 84 (115)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCEEEE--E---ECCEEEEEEEEEEEECCCC
T ss_conf 5789869984365558877996631789--8---0621568899999833799
No 187
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC; InterPro: IPR009154 This family includes TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes .; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=28.30 E-value=29 Score=15.33 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9002768999999999999999874157766555
Q gi|254780477|r 1 MVMSTTRIGVLGGIVLLFIASYFFYTRKGSALNE 34 (232)
Q Consensus 1 ~~~~~~ri~~l~~~~~~~~~~~~~~~~~~~~~~~ 34 (232)
|.-+++||+|.+.++..+|+|.+.+.........
T Consensus 7 ~~rPS~k~slGvL~~~G~iaG~~~w~~F~~~~~~ 40 (394)
T TIGR02162 7 FTRPSAKISLGVLVVIGFIAGAILWQGFNVVLEK 40 (394)
T ss_pred HHCHHHHHHHHHHHHHHHHEEEEEECCCCCCEEC
T ss_conf 4040588999999985053021245343110025
No 188
>PRK13532 nitrate reductase; Provisional
Probab=27.95 E-value=44 Score=14.24 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 0276899999999999
Q gi|254780477|r 3 MSTTRIGVLGGIVLLF 18 (232)
Q Consensus 3 ~~~~ri~~l~~~~~~~ 18 (232)
|.++|+.+|=+++++.
T Consensus 1 m~lsRR~FlK~sa~~a 16 (828)
T PRK13532 1 MKLSRRDFMKANAAAA 16 (828)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9867799999999999
No 189
>pfam04239 DUF421 Protein of unknown function (DUF421). YDFR family
Probab=27.83 E-value=44 Score=14.22 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=4.7
Q ss_pred EEEEEEECCCCCCHH
Q ss_conf 899997058882064
Q gi|254780477|r 67 VTMVEYASMTCFHCA 81 (232)
Q Consensus 67 v~ivef~D~~Cp~C~ 81 (232)
+.++.=.-+..--|+
T Consensus 9 ~~li~~G~i~~~~l~ 23 (98)
T pfam04239 9 TLLIENGKILEENLK 23 (98)
T ss_pred EEEEECCEECHHHHH
T ss_conf 799999999699998
No 190
>TIGR00373 TIGR00373 conserved hypothetical protein TIGR00373; InterPro: IPR005241 This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. .
Probab=27.25 E-value=23 Score=16.03 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=4.0
Q ss_pred CCCEEEE--CCE
Q ss_conf 3657998--989
Q gi|254780477|r 198 STPVFFI--GGN 207 (232)
Q Consensus 198 gTPt~~V--nG~ 207 (232)
----||| |+.
T Consensus 107 ~nn~ff~CpN~~ 118 (168)
T TIGR00373 107 KNNMFFVCPNMN 118 (168)
T ss_pred CCCEEEEECCCE
T ss_conf 077258713840
No 191
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=27.20 E-value=45 Score=14.15 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-------------------------HHCCHHHHHHHHH
Q ss_conf 245588888865433211345689987643110000688986-------------------------4059899999999
Q gi|254780477|r 131 GYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDT-------------------------CLNDQNILDDIKA 185 (232)
Q Consensus 131 ~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-------------------------~~~~~~~~~~i~~ 185 (232)
+-......+...|.. .+....+.+..++..+|+...++.. |...+ .+.+..
T Consensus 34 ~~salipiL~~iQe~--~Gyip~eai~~vA~~l~l~~a~V~~VaTFY~~f~~~P~Gk~~I~VC~~~sC~~~G--a~~l~~ 109 (169)
T PRK07571 34 RQDALIEVLHKAQEL--FGYLERDLLLYVARQLKLPLSRVYGVATFYHLFSLKPSGEHTCVVCTGTACYVKG--SAAILE 109 (169)
T ss_pred CHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCC--HHHHHH
T ss_conf 866899999999998--2998999999999997969999999987999854789986699970888888769--899999
Q ss_pred HHHHHHHHCCC----------------------CCCCEEEECCEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999986188----------------------5365799898996189999999999999999
Q gi|254780477|r 186 GKKRASEDFAI----------------------DSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227 (232)
Q Consensus 186 ~~~~~~~~~gi----------------------~gTPt~~VnG~~~~g~~~~~~~~~~id~ll~ 227 (232)
.. .+.+|| ..-|.+.|||+.+. ..+++.+..+||...+
T Consensus 110 ~l---~~~Lgi~~getT~DG~ftle~v~ClGaC~~AP~~~In~~~~~-~lTpekv~~li~g~~~ 169 (169)
T PRK07571 110 DL---ENELGIKAGETTADGKLSLLTARCLGACGIAPAVVFDGKVAG-KQTPESVLEKVQGWLQ 169 (169)
T ss_pred HH---HHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCEECC-CCCHHHHHHHHHHHHC
T ss_conf 99---998498999706898599998234372689996999999617-8898999999999859
No 192
>PRK10329 glutaredoxin-like protein; Provisional
Probab=27.18 E-value=45 Score=14.15 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=19.8
Q ss_pred HHCCCCCCCEEEECCEEECCCCCHHHHHHHH
Q ss_conf 8618853657998989961899999999999
Q gi|254780477|r 192 EDFAIDSTPVFFIGGNLYLGDMSEGVFSKII 222 (232)
Q Consensus 192 ~~~gi~gTPt~~VnG~~~~g~~~~~~~~~~i 222 (232)
+..|.+++|.++.++.-+.|- -++.++++-
T Consensus 44 k~~G~~q~PVV~~~~~~wsGF-RPD~i~~L~ 73 (81)
T PRK10329 44 RAQGFRQLPVVIAGDLSWSGF-RPDMINRLH 73 (81)
T ss_pred HHCCCCCCCEEEECCCEECCC-CHHHHHHHH
T ss_conf 976985599899699544360-989999888
No 193
>pfam05495 zf-CHY CHY zinc finger. This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes.
Probab=27.05 E-value=17 Score=16.82 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHH
Q ss_conf 99705888206443
Q gi|254780477|r 70 VEYASMTCFHCAEF 83 (232)
Q Consensus 70 vef~D~~Cp~C~~~ 83 (232)
++|.+|.||.|+.+
T Consensus 60 ~~~~~y~C~~C~~~ 73 (74)
T pfam05495 60 VEFAKYYCPICKLF 73 (74)
T ss_pred CCHHCCCCCCCCCC
T ss_conf 40000268748875
No 194
>TIGR01165 cbiN cobalt transport protein; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system .; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane.
Probab=26.89 E-value=45 Score=14.12 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=19.2
Q ss_pred CHHHH-H--HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 02768-9--9999999999999987415776
Q gi|254780477|r 3 MSTTR-I--GVLGGIVLLFIASYFFYTRKGS 30 (232)
Q Consensus 3 ~~~~r-i--~~l~~~~~~~~~~~~~~~~~~~ 30 (232)
|+++| | -+|+++++++++.+.++.....
T Consensus 1 M~~k~~ina~LL~~va~L~~lPL~i~~G~~~ 31 (94)
T TIGR01165 1 MSMKKTINALLLAAVAALVVLPLLIYAGKGE 31 (94)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9753089999999999999999987116756
No 195
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=26.63 E-value=46 Score=14.09 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHCCCCCCC-CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 89999999-999999998741577665-554---55433343221124587666784116898888999970588820
Q gi|254780477|r 7 RIGVLGGI-VLLFIASYFFYTRKGSAL-NEL---PIPDGVVDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFH 79 (232)
Q Consensus 7 ri~~l~~~-~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~~~A~v~ivef~D~~Cp~ 79 (232)
.+.+..+. +|+++..|+++....+.. +.. .-+-+...-.......+...-.=|=|-++||-+|.|+-||-=-.
T Consensus 4 ~~l~~~~P~iL~l~g~~~~f~R~~~G~lGG~~~g~f~fGKS~Ak~~~~~~~kv~F~DVAG~dEAKeEl~EiVdFLK~P 81 (505)
T TIGR01241 4 GFLFSLLPPILLLIGLFFLFRRQMQGGLGGKGRGAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELVEIVDFLKNP 81 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 779999999999999999999972267888776525653378987305898132234445323334333134222696
No 196
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=26.60 E-value=46 Score=14.08 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=17.2
Q ss_pred CEEEEEEECCCCCCHHHHHHHH
Q ss_conf 8899997058882064433421
Q gi|254780477|r 66 PVTMVEYASMTCFHCAEFHNKT 87 (232)
Q Consensus 66 ~v~ivef~D~~Cp~C~~~~~~~ 87 (232)
|-++..|....||||++..-.+
T Consensus 16 ~~~mkLY~~~~cPfa~rVri~L 37 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVL 37 (89)
T ss_pred CCEEEEECCCCCHHHHHHHHHH
T ss_conf 9948997269991999999999
No 197
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=26.52 E-value=46 Score=14.08 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=65.1
Q ss_pred CCCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898888999970588820-6443342113443200-00203799843323430245777666666665321245588888
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFH-CAEFHNKTFKYLEDKY-IKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLL 139 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~-C~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (232)
+...+++|+-|.=-.||. |-..-.++..++++.. ....++++++...-..... ......++. ..+.
T Consensus 64 ~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt--p~~lk~Y~~----~~~~------ 131 (207)
T COG1999 64 DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT--PEVLKKYAE----LNFD------ 131 (207)
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC--HHHHHHHHC----CCCC------
T ss_conf 5679889999755678974757999999999973643478489999987999998--999999732----1688------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE---CCEE---ECCCC
Q ss_conf 86543321134568998764311000068898640598999999999999998618853657998---9899---61899
Q gi|254780477|r 140 FNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFI---GGNL---YLGDM 213 (232)
Q Consensus 140 ~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTPt~~V---nG~~---~~g~~ 213 (232)
..|..-....+.+..+++..++.-.... .+.. ..+.+.=+..+++ +|+. +.+..
T Consensus 132 ----~~~~~ltg~~~~~~~~~k~~~V~~~~v~-------------~~~~---~~y~~~Hs~~~~lid~~G~~~~~~~~~~ 191 (207)
T COG1999 132 ----PRWIGLTGTPEQIEEVAKAYGVFYSKVP-------------LDDS---QNYTIDHSAGFYLIDADGRFLGTYDYGE 191 (207)
T ss_pred ----CCEEEEECCHHHHHHHHHHHCEEEEEEC-------------CCCC---CCCEEECCEEEEEECCCCEEEEEECCCC
T ss_conf ----8862650898899999996161456512-------------4777---7622414406999889982999845899
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q gi|254780477|r 214 SEGVFSKIIDSMIQD 228 (232)
Q Consensus 214 ~~~~~~~~id~ll~~ 228 (232)
+.+++...|..++++
T Consensus 192 ~~~~i~~~l~~l~~~ 206 (207)
T COG1999 192 PPEEIAADLKKLLKE 206 (207)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 869999999998636
No 198
>TIGR01111 mtrA tetrahydromethanopterin S-methyltransferase, subunit A; InterPro: IPR005778 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane.
Probab=26.45 E-value=46 Score=14.07 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 24587666784116898888999970588
Q gi|254780477|r 48 LAASPSTMKDVSIGQKDAPVTMVEYASMT 76 (232)
Q Consensus 48 ~~~~~~~~~~~~~G~~~A~v~ivef~D~~ 76 (232)
..+=|....++++|||.+||.++.-.+--
T Consensus 8 ApGWPiv~GeY~VGdpe~~V~vvTlGSH~ 36 (246)
T TIGR01111 8 APGWPIVKGEYVVGDPESPVLVVTLGSHI 36 (246)
T ss_pred CCCCCEECCCEEECCCCCCCEEEECCCCC
T ss_conf 57885422553664878872688734567
No 199
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=26.36 E-value=20 Score=16.39 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=14.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHH
Q ss_conf 8889999705888206443342
Q gi|254780477|r 65 APVTMVEYASMTCFHCAEFHNK 86 (232)
Q Consensus 65 A~v~ivef~D~~Cp~C~~~~~~ 86 (232)
...++.....+.||+|....-+
T Consensus 78 ~~~~~~~~~~~~CP~Cgs~~~~ 99 (114)
T PRK03681 78 QYVTLLTQRVRRCPQCHGDMLR 99 (114)
T ss_pred CEEEECCCCCCCCCCCCCCCCE
T ss_conf 8554067767739088399758
No 200
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=25.51 E-value=48 Score=13.96 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=19.0
Q ss_pred HHHCCCCCCCEEEE--CCE--EECCCCCHHH
Q ss_conf 98618853657998--989--9618999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGN--LYLGDMSEGV 217 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~--~~~g~~~~~~ 217 (232)
.+.|||+.+|+|+| ++. .+.|..+..+
T Consensus 152 F~qf~I~~VPAlVV~c~~~~DvI~Gnl~l~q 182 (209)
T PRK13730 152 FSQYGIRSVPALVVFCSQGYDIIRGNLRVGQ 182 (209)
T ss_pred HHHCCCCCCCEEEEECCCCCCEEEECCCHHH
T ss_conf 9875974254789983787557750510999
No 201
>pfam05876 Terminase_GpA Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.
Probab=25.32 E-value=16 Score=16.97 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=9.7
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 705888206443342113
Q gi|254780477|r 72 YASMTCFHCAEFHNKTFK 89 (232)
Q Consensus 72 f~D~~Cp~C~~~~~~~~~ 89 (232)
.+-.-||||..++.-.+.
T Consensus 198 ~~~vpCPhCg~~q~l~~~ 215 (552)
T pfam05876 198 RYYVPCPHCGEEQELRWE 215 (552)
T ss_pred EEEEECCCCCCCCCCCCC
T ss_conf 998689899986555005
No 202
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.31 E-value=23 Score=16.04 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=8.9
Q ss_pred CCCCCCEEEECCEEECC
Q ss_conf 88536579989899618
Q gi|254780477|r 195 AIDSTPVFFIGGNLYLG 211 (232)
Q Consensus 195 gi~gTPt~~VnG~~~~g 211 (232)
+-.|+=.+-|+|..=.|
T Consensus 186 ~~kg~gvvpl~g~~C~G 202 (239)
T COG1579 186 NKKGVGVVPLEGRVCGG 202 (239)
T ss_pred CCCCCEEEEECCCCCCC
T ss_conf 48995278515870357
No 203
>PRK03922 hypothetical protein; Provisional
Probab=24.69 E-value=45 Score=14.17 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.2
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHH
Q ss_conf 898888999970588820644334
Q gi|254780477|r 62 QKDAPVTMVEYASMTCFHCAEFHN 85 (232)
Q Consensus 62 ~~~A~v~ivef~D~~Cp~C~~~~~ 85 (232)
+.+..-+=++-.+-.||+|..-.+
T Consensus 37 ~~~l~yVeievG~~~cP~Cge~~~ 60 (113)
T PRK03922 37 PEDLDYVEVEVGSTSCPKCGEPFD 60 (113)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 056976998257521887778667
No 204
>KOG2462 consensus
Probab=24.08 E-value=25 Score=15.79 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=22.7
Q ss_pred HHHHHHHHH-HCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 998764311-00006889864059899999999999999861885365
Q gi|254780477|r 154 DALLNMAKF-AGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTP 200 (232)
Q Consensus 154 ~~l~~~~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gi~gTP 200 (232)
.+|+.=.+. .++...+...|-.+......+.+..+.+-. -+..|.|
T Consensus 229 SNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~C~-~~~~g~~ 275 (279)
T KOG2462 229 SNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSESACL-KYLAGVM 275 (279)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCC
T ss_conf 7889998861587664374023489999998776450265-6555677
No 205
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC; InterPro: IPR014113 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA , . The N-terminal portion of these proteins is heterogeneous. .
Probab=23.65 E-value=38 Score=14.62 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=12.3
Q ss_pred HHHCCCCCCCEEEE
Q ss_conf 98618853657998
Q gi|254780477|r 191 SEDFAIDSTPVFFI 204 (232)
Q Consensus 191 ~~~~gi~gTPt~~V 204 (232)
-+.|+|+.+|||++
T Consensus 68 F~~f~I~~VPA~V~ 81 (139)
T TIGR02742 68 FKQFDITAVPALVV 81 (139)
T ss_pred HCCCCCCCCCEEEE
T ss_conf 21068630454888
No 206
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit; InterPro: IPR002023 Respiratory-chain NADH dehydrogenase (ubiquinone) (1.6.5.3 from EC) , (also known as complex I or NADH-ubiquinone oxidoreductase) is an oligomeric enzymatic complex located in the inner mitochondrial membrane which also seems to exist in the chloroplast and in cyanobacteria (as a NADH-plastoquinone oxidoreductase). Among the 25 to 30 polypeptide subunits of this bioenergetic enzyme complex there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to , : Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0006118 electron transport.
Probab=23.25 E-value=53 Score=13.69 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-------------------------HHHCCHHHHHHHH
Q ss_conf 124558888886543321134568998764311000068898-------------------------6405989999999
Q gi|254780477|r 130 GGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFD-------------------------TCLNDQNILDDIK 184 (232)
Q Consensus 130 ~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~~~~~g~~~~~~~-------------------------~~~~~~~~~~~i~ 184 (232)
.+.......|...|... .|+.+++.+..+|+-+|+....+. .|+-.+. +++.
T Consensus 15 ~~RSA~~~~L~~aQ~~n-~Gwv~~~~i~~vA~~L~~~~~~V~eVATFY~~f~~~PvGr~~~~vC~~~~C~L~G~--~~l~ 91 (153)
T TIGR01958 15 QKRSAILPALRIAQKQN-KGWVSPEAIEAVAEMLGIPPVWVYEVATFYSMFDTEPVGRYHLQVCTNVPCALRGS--EALL 91 (153)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCHHHEEEEEEEHHHHCCCCCCCEEEEEECCHHHHHHHH--HHHH
T ss_conf 36899999999998740-78648899999999868870130213100100016765427877505743155337--9999
Q ss_pred HHHHHHHHHCC-----------------------CCCCCEEEEC-CEEECCCCCHHHHHHHHHHH
Q ss_conf 99999998618-----------------------8536579989-89961899999999999999
Q gi|254780477|r 185 AGKKRASEDFA-----------------------IDSTPVFFIG-GNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 185 ~~~~~~~~~~g-----------------------i~gTPt~~Vn-G~~~~g~~~~~~~~~~id~l 225 (232)
. ..-+++| -..-|.+.|| +..+. ..+.+.+.++|+++
T Consensus 92 ~---~le~~Lgi~~gEtT~DG~F~l~c~vECLGAC~~APv~~iNd~d~y~-~l~~e~l~~lL~~~ 152 (153)
T TIGR01958 92 K---YLENKLGIKPGETTPDGRFTLKCEVECLGACGNAPVMMINDDDYYE-FLTEERLDELLESL 152 (153)
T ss_pred H---HHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCC-CCCHHHHHHHHHHC
T ss_conf 9---9999828667734799717988500560205888889870784125-68988899999741
No 207
>PRK13622 psbV cytochrome c-550; Provisional
Probab=22.98 E-value=45 Score=14.16 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 02768999999999999999874157
Q gi|254780477|r 3 MSTTRIGVLGGIVLLFIASYFFYTRK 28 (232)
Q Consensus 3 ~~~~ri~~l~~~~~~~~~~~~~~~~~ 28 (232)
++..|..++..++..+.+++.+..+.
T Consensus 12 ~~~ar~r~ll~~la~~~~~~~~~~~~ 37 (180)
T PRK13622 12 FAAARRRLLILILAAGMAGFAWGLAP 37 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 88888789999999999999996078
No 208
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=22.43 E-value=55 Score=13.59 Aligned_cols=25 Identities=24% Similarity=0.682 Sum_probs=16.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 88889999705888206443342113
Q gi|254780477|r 64 DAPVTMVEYASMTCFHCAEFHNKTFK 89 (232)
Q Consensus 64 ~A~v~ivef~D~~Cp~C~~~~~~~~~ 89 (232)
+-|| ++-+.-..|++|+.+..+.++
T Consensus 15 ~KpI-flsig~~~C~wC~vM~~esF~ 39 (124)
T cd02955 15 DKPI-FLSIGYSTCHWCHVMEHESFE 39 (124)
T ss_pred CCCE-EEEEECCCCHHHHHHHHHHCC
T ss_conf 9988-999746769889999987318
No 209
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=22.36 E-value=55 Score=13.58 Aligned_cols=35 Identities=3% Similarity=0.067 Sum_probs=24.2
Q ss_pred CCCCEEEECCE-EECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 53657998989-961899999999999999998603
Q gi|254780477|r 197 DSTPVFFIGGN-LYLGDMSEGVFSKIIDSMIQDSTR 231 (232)
Q Consensus 197 ~gTPt~~VnG~-~~~g~~~~~~~~~~id~ll~~~~~ 231 (232)
.++|-+|+-.| -...+.+...++..++.+|.+.|+
T Consensus 111 ~~vPvLI~cNKqDl~~A~~~~~Ik~~LEkEi~~lr~ 146 (181)
T pfam09439 111 NGIDILIACNKQEIFTARPPKKIKQALEKEINTIRE 146 (181)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899789997374633577999999999999999999
No 210
>pfam10122 Mu-like_Com Mu-like prophage protein Com. Members of this family of proteins comprise the translational regulator of mom.
Probab=21.99 E-value=28 Score=15.47 Aligned_cols=15 Identities=20% Similarity=0.667 Sum_probs=11.1
Q ss_pred EECCCCCCHHHHHHH
Q ss_conf 705888206443342
Q gi|254780477|r 72 YASMTCFHCAEFHNK 86 (232)
Q Consensus 72 f~D~~Cp~C~~~~~~ 86 (232)
+-|+.|.||.+.-..
T Consensus 2 ~k~~RCg~C~kLLAr 16 (51)
T pfam10122 2 LKNIRCGHCNKLLAR 16 (51)
T ss_pred CCCCCCCCHHHHHHH
T ss_conf 641002547899862
No 211
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=21.86 E-value=28 Score=15.50 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=14.1
Q ss_pred HCCCCCCCEEEEC-CEEECCCCCHHHHHHH
Q ss_conf 6188536579989-8996189999999999
Q gi|254780477|r 193 DFAIDSTPVFFIG-GNLYLGDMSEGVFSKI 221 (232)
Q Consensus 193 ~~gi~gTPt~~Vn-G~~~~g~~~~~~~~~~ 221 (232)
++|+ ++++| -+.+.|-.+-.+++++
T Consensus 187 ~LG~----~~v~~~~~~~~Gv~tDGD~RR~ 212 (272)
T TIGR00393 187 RLGL----AVVCDENEQLKGVFTDGDLRRV 212 (272)
T ss_pred CCCE----EEEEECCCCEEEEEECCHHHHH
T ss_conf 8617----9997155524678714659999
No 212
>PRK12366 replication factor A; Reviewed
Probab=21.35 E-value=44 Score=14.19 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=8.7
Q ss_pred EEEEEEC-----CCCCCHHHH
Q ss_conf 9999705-----888206443
Q gi|254780477|r 68 TMVEYAS-----MTCFHCAEF 83 (232)
Q Consensus 68 ~ivef~D-----~~Cp~C~~~ 83 (232)
+|+.+.. +.||.|++-
T Consensus 522 tiv~v~~~~l~~~~CP~C~kr 542 (649)
T PRK12366 522 TVVDYRKQKIILTLCPNCRKR 542 (649)
T ss_pred EEEEEECCCEEEEECCCCCCE
T ss_conf 999981684789728666760
No 213
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=21.22 E-value=46 Score=14.06 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=6.7
Q ss_pred CCCCCHHHHHHHHHHHHH
Q ss_conf 888206443342113443
Q gi|254780477|r 75 MTCFHCAEFHNKTFKYLE 92 (232)
Q Consensus 75 ~~Cp~C~~~~~~~~~~l~ 92 (232)
..||.|....+++.|.+.
T Consensus 272 ~~c~~~~~s~~eLePRlF 289 (956)
T TIGR00630 272 AACPECGFSLEELEPRLF 289 (956)
T ss_pred CCCCCCCCCHHCCCCCCC
T ss_conf 374204622100362103
No 214
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH; InterPro: IPR011909 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterised by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase .; GO: 0006118 electron transport, 0045454 cell redox homeostasis.
Probab=20.92 E-value=59 Score=13.39 Aligned_cols=32 Identities=13% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHHHCCCCCCCEEEECCE-EECCCCCHHHHHHH
Q ss_conf 9998618853657998989-96189999999999
Q gi|254780477|r 189 RASEDFAIDSTPVFFIGGN-LYLGDMSEGVFSKI 221 (232)
Q Consensus 189 ~~~~~~gi~gTPt~~VnG~-~~~g~~~~~~~~~~ 221 (232)
+..+.+|.+..|-+..+|. -+.|=+ ++.|+++
T Consensus 39 d~vk~lGF~~~PVi~~~g~~~~SGFr-PD~lk~L 71 (72)
T TIGR02194 39 DYVKALGFRQVPVIVAEGDESWSGFR-PDKLKAL 71 (72)
T ss_pred HHHHHCCCEECCEEEECCCEEEECCC-HHHHCCC
T ss_conf 99987486307626767970021338-5874003
No 215
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=20.28 E-value=54 Score=13.66 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCCEEEECCE--EECCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 3657998989--961899999999999999998603
Q gi|254780477|r 198 STPVFFIGGN--LYLGDMSEGVFSKIIDSMIQDSTR 231 (232)
Q Consensus 198 gTPt~~VnG~--~~~g~~~~~~~~~~id~ll~~~~~ 231 (232)
|.+.++.||+ .+....+.+.|...|..+|+...+
T Consensus 313 G~~eiI~~g~nG~Lv~~~d~~~la~~i~~ll~~~~~ 348 (372)
T cd04949 313 GPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKL 348 (372)
T ss_pred CCHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHH
T ss_conf 968884589847996899999999999999869999
No 216
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=20.17 E-value=61 Score=13.29 Aligned_cols=36 Identities=11% Similarity=0.450 Sum_probs=27.4
Q ss_pred HHHCCCCCCCEEEE--CCEE--ECCCCCHHHHHHHHHHHH
Q ss_conf 98618853657998--9899--618999999999999999
Q gi|254780477|r 191 SEDFAIDSTPVFFI--GGNL--YLGDMSEGVFSKIIDSMI 226 (232)
Q Consensus 191 ~~~~gi~gTPt~~V--nG~~--~~g~~~~~~~~~~id~ll 226 (232)
++++|+.+.++++| +|+. +.|..+.+.+...|=-++
T Consensus 80 AkKlg~~e~gsiyvfk~~~~IEydG~~sadtLVeFL~dl~ 119 (120)
T cd03065 80 AKKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHCCCCCCEEEEEECCCEEEECCEECHHHHHHHHHHHH
T ss_conf 9984757676289986893886647137589999999863
No 217
>pfam05488 PAAR_motif PAAR motif. This motif is found usually in pairs in a family of bacterial membrane proteins. It is also found as a triplet of tandem repeats comprising the entire length in a another family of hypothetical proteins.
Probab=20.08 E-value=41 Score=14.40 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=10.6
Q ss_pred CCCCCEEEECCEEE
Q ss_conf 85365799898996
Q gi|254780477|r 196 IDSTPVFFIGGNLY 209 (232)
Q Consensus 196 i~gTPt~~VnG~~~ 209 (232)
++|.|++.|||+..
T Consensus 2 ~~Gs~~v~inG~PA 15 (26)
T pfam05488 2 IEGSPNVKINGKPA 15 (26)
T ss_pred CCCCCCCEECCCCH
T ss_conf 24788711878606
No 218
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit; InterPro: IPR012686 This entry represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation . In Escherichia coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (IPR012684 from INTERPRO). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).; GO: 0008704 5-carboxymethyl-2-hydroxymuconate delta-isomerase activity, 0018800 5-oxopent-3-ene-125-tricarboxylate decarboxylase activity.
Probab=20.08 E-value=57 Score=13.49 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=18.7
Q ss_pred CCEEEECCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 6579989899618999999999999999986
Q gi|254780477|r 199 TPVFFIGGNLYLGDMSEGVFSKIIDSMIQDS 229 (232)
Q Consensus 199 TPt~~VnG~~~~g~~~~~~~~~~id~ll~~~ 229 (232)
|=++.|||+.-+ ..+...+++=|++||++.
T Consensus 134 ~i~~~vNG~~~q-~~~~s~l~R~~~~Li~~~ 163 (206)
T TIGR02305 134 TIKVYVNGKPKQ-SNNTSNLVRSAEQLIAEV 163 (206)
T ss_pred EEEEEECCEEHH-HHHHHCCCCCHHHHHHHH
T ss_conf 688988886001-021201457989999997
No 219
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=20.08 E-value=62 Score=13.28 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCHHHHHHHHHHH
Q ss_conf 568998764311000068898640598-999999999999998618853657998989961899999999999999
Q gi|254780477|r 151 NYRDALLNMAKFAGFSKNDFDTCLNDQ-NILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSM 225 (232)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~gi~gTPt~~VnG~~~~g~~~~~~~~~~id~l 225 (232)
..++.....|.+.+.|.--+.+..=.. -.-.-+.. +. .+.|+.+| +++|+|..++|..+|++.++-.+.|
T Consensus 39 ~~~~efi~AAiet~ADAilvSSlYGhg~~DC~Glr~---~c-~eaGl~~i-llYVGGNlvVGk~df~dV~~rFkeM 109 (134)
T TIGR01501 39 TAQEEFIKAAIETDADAILVSSLYGHGEIDCAGLRD---KC-AEAGLDAI-LLYVGGNLVVGKTDFEDVEKRFKEM 109 (134)
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH---HH-HHCCCCCE-EEEECCEEEECCCCHHHHHHHHHHC
T ss_conf 615788877322899889983020780001245789---99-86588827-9987676655776736788887645
Done!