HHsearch results for GI: 254780477 and protein with PDBid: 1qgv_A

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=92.08  E-value=0.13  Score=28.73  Aligned_cols=35  Identities=11%  Similarity=0.194  Sum_probs=26.1

Q ss_pred             CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             16898888999970588820644334211344320
Q gi|254780477|r   60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDK   94 (232)
Q Consensus        60 ~G~~~A~v~ivef~D~~Cp~C~~~~~~~~~~l~~~   94 (232)
                      +-+.+-+++|+.|....||+|+.+.+.+.....++
T Consensus        18 I~~~~~k~VvV~F~a~wC~~C~~~~p~l~~la~~~   52 (142)
T 1qgv_A           18 ILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKV   52 (142)
T ss_dssp             HHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             97289988999995995888778442199999996