RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase
[Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)



>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like,
           oxidoreductase, competence, redox-active center; 1.40A
           {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
          Length = 202

 Score =  116 bits (290), Expect = 6e-27
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 3/182 (1%)

Query: 48  LAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILRE 107
           ++  PS      +G+ DAPVT+VE+    C  C  F++  F  ++  +I  G +++    
Sbjct: 12  VSGQPSIKGQPVLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVN 71

Query: 108 FPLD-SVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMA-KFAGF 165
                  S +A + +    K     +W F   LF KQ D          L ++A      
Sbjct: 72  VMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKI 131

Query: 166 SKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSM 225
                   L+ +     ++       +   I +TP  ++   +           + I+  
Sbjct: 132 KPETLKENLDKETFASQVEKDSDLN-QKMNIQATPTIYVNDKVIKNFADYDEIKETIEKE 190

Query: 226 IQ 227
           ++
Sbjct: 191 LK 192


>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold,
           oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis
           wmel} PDB: 3f4r_A* 3f4t_A*
          Length = 226

 Score =  108 bits (270), Expect = 1e-24
 Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 17/203 (8%)

Query: 42  VDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKL 101
           +    LL   P+   D  +G   AP+ M+EYAS+TC+HC+ FH   F  +++KYI TGK+
Sbjct: 19  ITSNELLLPLPN---DKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKM 75

Query: 102 RYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKN-YRDALLNMA 160
            YI R FPLD     A ML+ C EK+ D  Y+ F   +FN  D W          L  +A
Sbjct: 76  LYIFRHFPLDYRGLKAAMLSHCYEKQED--YFNFNKAVFNSIDSWNYYNLSDLTLLQRIA 133

Query: 161 KFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGN-----------LY 209
             +   ++ F+ C+ND+ I+D I   K  A     I + P+FFI  N            +
Sbjct: 134 ALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKH 193

Query: 210 LGDMSEGVFSKIIDSMIQDSTRR 232
            G      F+ +ID +   +  +
Sbjct: 194 GGYKELKYFTNVIDKLYGKAIVK 216


>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox
           protein, protein folding, redox active centre; 1.81A
           {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
          Length = 186

 Score =  105 bits (263), Expect = 6e-24
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 5/179 (2%)

Query: 55  MKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS 114
           M   +   K+    +V Y    C +C E   K    L   YI   K+ Y           
Sbjct: 1   MASATTSSKNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKD 60

Query: 115 TV-AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTC 173
           ++     +          +  F   LF  Q D       ++ L    K     K   +  
Sbjct: 61  SIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKI 120

Query: 174 LNDQNILDDIKAGK----KRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQD 228
           + D    D          K+ ++D  I +TP  FI G           + K++   I+ 
Sbjct: 121 IKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIKL 179


>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
           periplasm, redox-active center, transcription regulator;
           HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1}
          Length = 192

 Score = 97.6 bits (242), Expect = 2e-21
 Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 6/170 (3%)

Query: 54  TMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSV 113
            +       +   + +VE     C HC  F      + E        +R       + +V
Sbjct: 14  ELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNV 73

Query: 114 STVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTC 173
                +          G      + +F             + + +     G  K  F + 
Sbjct: 74  HGQMFLTLES-----MGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLST 128

Query: 174 LNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
            N   I   ++  KK A   + +   P   + G       S G   + + 
Sbjct: 129 YNSFAIKGQMEKAKKLA-MAYQVTGVPTMVVNGKYRFDIGSAGGPEETLK 177


>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, PSI,
           protein structure initiative, midwest center for
           structural genomics; HET: MSE; 1.30A {Enterococcus
           faecalis V583} SCOP: c.47.1.13
          Length = 175

 Score = 96.2 bits (238), Expect = 6e-21
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 41  VVDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGK 100
            +D   + A   +T   + IG+ +APV M+E+ ++ C +C ++  +  + L  + +K+GK
Sbjct: 3   AMDISVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWF-EESEELLAQSVKSGK 61

Query: 101 LRYILREFPLDSVSTVAVMLARCAEKRMD-GGYWGFVSLLFNKQDDWINSKNYRDALLNM 159
           +  I++ F  +  S     +                +  +F  QD+W N     + +   
Sbjct: 62  VERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLT--LEEVATY 119

Query: 160 AKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFS 219
           A+     K   D  L    I +   A          I   P   IG  ++   ++E    
Sbjct: 120 AEKNLGLKEQKDATLVSAVIAEANAAH---------IQFVPTIIIGEYIFDESVTEEELR 170

Query: 220 KIID 223
             I+
Sbjct: 171 GYIE 174


>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC,
           structural genomics, protein structure initiative; 1.76A
           {Novosphingobium aromaticivorans DSM12444}
          Length = 205

 Score = 92.1 bits (227), Expect = 9e-20
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 57  DVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV 116
              +G   A + +VE+ S TC HC+ F  ++   L+   ++ GK    +R F  D +   
Sbjct: 7   HHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMT 66

Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDW-----------------------INSKNYR 153
             ++  C        ++   +     Q  W                         +    
Sbjct: 67  VALITNCVPPSR---FFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASD 123

Query: 154 DALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDM 213
               +     G  ++  D CL+++ +   + A    A   + +  TP F I G L  G  
Sbjct: 124 FRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTH 183

Query: 214 SEGVFSKIIDSMIQD 228
                   I + + +
Sbjct: 184 DWASLRPQILARLNE 198


>3gyk_A 27KDA outer membrane protein; APC61738.2, thioredoxin-like,
           oxidoreductase, structural genomics, PSI-2, protein
           structure initiative; HET: MSE; 1.76A {Silicibacter
           pomeroyi dss-3}
          Length = 175

 Score = 91.8 bits (227), Expect = 1e-19
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 11/167 (6%)

Query: 57  DVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV 116
              +G  +  VT+VE+    C +C          ++        +R + RE+P+    + 
Sbjct: 14  APVLGNPEGDVTVVEFFDYNCPYCRRAM----AEVQGLVDADPNVRLVYREWPILGEGSD 69

Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLND 176
               A     R  G Y  F   L                +L +A+  G         +  
Sbjct: 70  FAARAAL-AARQQGKYEAFHWALMGMSGKA-----NETGVLRIAREVGLDTEQLQRDMEA 123

Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
             +   I      A +    + TP F +   L  G + +      +D
Sbjct: 124 PEVTAHIAQSMALA-QKLGFNGTPSFVVEDALVPGFVEQSQLQDAVD 169


>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural
           genomics, protein structure initiative; 2.50A
           {Pseudomonas syringae PV}
          Length = 182

 Score = 91.2 bits (225), Expect = 2e-19
 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 9/173 (5%)

Query: 59  SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAV 118
           ++     P     +   TC    +   K    L         +R  L+  P    S V V
Sbjct: 8   ALSWGHGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIV 67

Query: 119 MLARCAEK--RMDGGYWGFVSLLFNKQDDWINSKN------YRDALLNMAKFAGFSKNDF 170
                A             ++ + + ++++    +             +A+   +S    
Sbjct: 68  RCILAAATLEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLAL 127

Query: 171 DTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
                +  +   +K   K A     I  +P F I G +  G  S    SK + 
Sbjct: 128 AEAFANPELEHAVKWHTKYA-RQNGIHVSPTFMINGLVQPGMSSGDPVSKWVS 179


>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
           thioredoxin fold, redox- active center; 1.90A {Xylella
           fastidiosa}
          Length = 193

 Score = 85.0 bits (209), Expect = 1e-17
 Identities = 22/172 (12%), Positives = 43/172 (25%), Gaps = 3/172 (1%)

Query: 56  KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST 115
                      + +VE    TC HCA F +K   +   +               +     
Sbjct: 16  DGRPFAPLAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFA 75

Query: 116 VAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLN 175
            A + A              +    +++          D L       G   + F    N
Sbjct: 76  RAYLAADVLGV--AKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFN 133

Query: 176 DQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227
              +    +A +   +       TP   + G   +         +I D ++ 
Sbjct: 134 GPEVEKRFQAARA-YALKVRPVGTPTIVVNGRYMVTGHDFEDTLRITDYLVS 184


>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
           initiative II(PSI II), NYSGXRC, structural genomics;
           2.35A {Bordetella parapertussis}
          Length = 195

 Score = 83.7 bits (206), Expect = 4e-17
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 11/172 (6%)

Query: 60  IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119
                  + ++E+ + TC HCA           + + KT     +L++ P+   +     
Sbjct: 20  PSDTPGKIEVLEFFAYTCPHCAAIEPMV-----EDWAKTAPQDVVLKQVPIA-FNAGMKP 73

Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNI 179
           L +                +F            + A+   A   G  +  FD+  +  ++
Sbjct: 74  LQQLYYTLQALERPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSV 133

Query: 180 LDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEG----VFSKIIDSMIQ 227
              ++   + A E   ID TP F +GG      +  G       K++D +I 
Sbjct: 134 QTQVQRASQLA-EAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIV 184


>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
           thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
           plasmid, oxidoreductase; HET: PE8 P4C P6G; 2.15A
           {Salmonella enterica subsp}
          Length = 189

 Score = 81.2 bits (199), Expect = 2e-16
 Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 7/145 (4%)

Query: 64  DAPVTMVEYASMTCFHCAEFHN--KTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLA 121
           DAP  +VE+ S  C  C  F       + +     +  ++              +    A
Sbjct: 14  DAPA-VVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWA 72

Query: 122 RCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILD 181
                 +           F          +  D         G S+ ++D  +    + D
Sbjct: 73  LAM---VMKETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVND 129

Query: 182 DIKAGKKRASEDFAIDSTPVFFIGG 206
            +   ++   +++ +  TP  ++ G
Sbjct: 130 MVALQERLF-KEYGVRGTPSVYVRG 153


>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein,
           periplasm, redox-active center, oxidoreductase; HET:
           PGE; 1.55A {Escherichia coli}
          Length = 195

 Score = 80.1 bits (196), Expect = 4e-16
 Identities = 24/186 (12%), Positives = 60/186 (32%), Gaps = 17/186 (9%)

Query: 58  VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVA 117
           +     +A  T+++  S  C  C ++       + +K            E   +     +
Sbjct: 10  LEKPIPNADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQAS 69

Query: 118 VMLARC-------------AEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAG 164
            + A               A  +     + + +   +K++ W + K+    +      AG
Sbjct: 70  EVFAVLINKDKAAGISLFDANSQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAG 129

Query: 165 FSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL---GDMSEGVFSKI 221
            S+ DF+  L +  + + ++  K    +   I   P + + G   +      S    + +
Sbjct: 130 MSQADFEAALKEPAVQETLEKWKASY-DVAKIQGVPAYVVNGKYLIYTKSIKSIDAMADL 188

Query: 222 IDSMIQ 227
           I  +  
Sbjct: 189 IRELAS 194


>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
           disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
           3dvw_A
          Length = 193

 Score = 79.6 bits (195), Expect = 5e-16
 Identities = 23/169 (13%), Positives = 42/169 (24%), Gaps = 5/169 (2%)

Query: 60  IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119
             Q+   V ++E+    C HCA       K+ +                           
Sbjct: 19  PQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEH---VVWQKEMLTLAR 75

Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALL-NMAKFAGFSKNDFDTCLNDQN 178
           LA   +           S +F+   +        + L   + +   F             
Sbjct: 76  LAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPE 135

Query: 179 ILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227
                   ++  +E F ID  P   +GG   +           ID +  
Sbjct: 136 SQARADKMQE-LTETFQIDGVPTVIVGGKYKVEFADWESGMNTIDLLAD 183


>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
           PSI-2, protein structure initiative; HET: MSE; 1.76A
           {Vibrio fischeri ES114}
          Length = 185

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 10/174 (5%)

Query: 59  SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAV 118
           +  + D    + E  +++C HC    N      ++     GK+     +    +      
Sbjct: 16  TSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMFYYA 75

Query: 119 MLARCAEKRMDGGYWGFVSLLFNKQDDWINSK--NYRDALLNMAKFAGFSKNDFDTCLND 176
              +            F+  LF        +     ++A        G            
Sbjct: 76  AEMQVDGAP----DHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQR 131

Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL---GDMSEGVFSKIIDSMIQ 227
             ++  +    K  SE   I S P F + G   +   G       +  I  +++
Sbjct: 132 DTLIKKVDNA-KMLSEKSGISSVPTFVVNGKYNVLIGGHDDPKQIADTIRYLLE 184


>3l9s_A Thiol:disulfide interchange protein DSBA; thioredoxin-fold,
           thiol-disulfide oxidoreductase, disulfide bond,
           periplasm; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
           1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
           1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2zup_A* 3e9j_B*
           1ac1_A 2b6m_A 2b3s_A
          Length = 191

 Score = 76.5 bits (187), Expect = 5e-15
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 9/167 (5%)

Query: 64  DAPVTMVEYASMTCFHCAEFHN--KTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLA 121
                ++E+ S  C HC +F         ++ K  +  K+     EF       +    A
Sbjct: 20  AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWA 79

Query: 122 RCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILD 181
                 ++            +      +      +  +   AG    D+D   N   +  
Sbjct: 80  VAMALGVEDKVTVP----LFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKS 135

Query: 182 DIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQD 228
            +   +K A  D  +   P  F+ G   +    +G+ +  +D  +Q 
Sbjct: 136 LVAQQEKAA-ADLQLQGVPAMFVNGKYQIN--PQGMDTSSMDVFVQQ 179


>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
           oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
           PDB: 2ijy_A
          Length = 181

 Score = 74.3 bits (181), Expect = 2e-14
 Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 4/161 (2%)

Query: 63  KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLAR 122
             +   + E+ S  C HC  F     +    +  +  K +     F   ++         
Sbjct: 16  ASSSPVVSEFFSFYCPHCNTFEPIIAQLK-QQLPEGAKFQKNHVSFMGGNMGQAMSKAYA 74

Query: 123 CAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDD 182
                        V ++FN+             L  +    G     FD   N   +   
Sbjct: 75  TMIAL--EVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSM 132

Query: 183 IKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223
           ++   K+  +D  +   P   +     +   S     +  D
Sbjct: 133 VRRFDKQF-QDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFD 172


>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
           DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
           serogroup B} PDB: 3dvx_A
          Length = 195

 Score = 73.4 bits (179), Expect = 4e-14
 Identities = 20/169 (11%), Positives = 46/169 (27%), Gaps = 6/169 (3%)

Query: 60  IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119
             ++   + ++E+    C HC  F     K  +            +  +  + +    + 
Sbjct: 17  PQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVV-WQPEMLGLARMA 75

Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNI 179
            A                 ++ ++    N      A        GF         +    
Sbjct: 76  AAVNLSGLKYQANPAVFKAVYEQKIRLENRS---VAGKWALSQKGFDGKKLMRAYDSPEX 132

Query: 180 LDDIKAGKKRASEDFAIDSTPVFFIGGNLYL-GDMSEGVFSKIIDSMIQ 227
                   ++ +E + IDSTP   +GG   +  +         I  ++ 
Sbjct: 133 XXXXLKM-QKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVA 180


>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active
           center; 1.90A {Escherichia coli} SCOP: c.47.1.13 PDB:
           1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 1ac1_A
           1fvj_A 3dks_A 1bq7_A 1u3a_A* 1ti1_A* 2hi7_A* 2zup_A*
           3e9j_B* 2b6m_A 2b3s_A
          Length = 189

 Score = 70.4 bits (171), Expect = 3e-13
 Identities = 22/166 (13%), Positives = 40/166 (24%), Gaps = 4/166 (2%)

Query: 64  DAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARC 123
                ++E+ S  C  C +F          K      ++                +    
Sbjct: 17  AGAPQVLEFFSFFCPSCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAW 76

Query: 124 AEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDI 183
           A     G        LF               + ++   AG    ++D   N   +   +
Sbjct: 77  AVAMALGVEDKVTVPLFEGVQKTQT-IRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLV 135

Query: 184 KAGKKRASEDFAIDSTPVFFIGGN--LYLGDMSEGVFSKIIDSMIQ 227
              +K A  D  +   P  F+ G   L    M        +     
Sbjct: 136 AQQEKAA-ADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYAD 180


>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
           protein, protein disulfide isomerase, thioredoxin fold;
           1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
           1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
          Length = 241

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 36/188 (19%)

Query: 45  RALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYI 104
              +         +  G+KDAPV +  +A   C +C +F  +        ++ +GK++  
Sbjct: 77  GREMWQRMEQSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQA-----RPWVDSGKVQLR 131

Query: 105 LREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAG 164
                +    + A                             I +           + +G
Sbjct: 132 TLLVGVIKPESPATA-------------------------AAILASKDPAKTWQQYEASG 166

Query: 165 FSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGV-----FS 219
                          +  +   +K   +D   + TP  +          + G+      +
Sbjct: 167 GKLKLNVPANVSTEQMKVLSDNEKLM-DDLGANVTPAIYYMSKENTLQQAVGLPDQKTLN 225

Query: 220 KIIDSMIQ 227
            I+ + +Q
Sbjct: 226 IIMGNKLQ 233


>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
           disulfide isomerase, protein folding, redox protein,
           redox-active center; HET: MES; 1.90A {Escherichia coli}
           SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
           2iyj_A
          Length = 216

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 41/191 (21%)

Query: 45  RALLAASPSTMKDVSI--GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLR 102
             +L    + ++   I          +  +  +TC +C + H    + + D       +R
Sbjct: 64  NKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLH----EQMADYNALGITVR 119

Query: 103 YILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKF 162
           Y+   FP   + + A    +      D              DD +  K+   A       
Sbjct: 120 YLA--FPRQGLDSDAEKEMKAIWCAKDKNKA---------FDDVMAGKSVAPA------- 161

Query: 163 AGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKI 221
                    +C  D +I D    G +       +  TP   +  G L  G        + 
Sbjct: 162 ---------SC--DVDIADHYALGVQ-----LGVSGTPAVVLSNGTLVPGYQPPKEMKEF 205

Query: 222 IDSMIQDSTRR 232
           +D   + ++ +
Sbjct: 206 LDEHQKMTSGK 216


>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain ATCC
           700825 / FA 1090), DSBC, structural genomics, unknown
           function; 2.00A {Neisseria gonorrhoeae fa 1090}
          Length = 147

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 19/173 (10%), Positives = 40/173 (23%), Gaps = 39/173 (22%)

Query: 56  KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST 115
           K +   + +  + +  ++   C  C    ++  K  +          +++    L   + 
Sbjct: 5   KAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDVTVY-----SFMMPIAGLHPDAA 59

Query: 116 VAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLN 175
               +  C   R                                    G        C  
Sbjct: 60  RKAQILWCQPDRAK--------------------------AWTDWMRKGKFPVGGSIC-- 91

Query: 176 DQNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKIIDSMIQ 227
           D  + +    G++     F  + TP      G    G        +II    Q
Sbjct: 92  DNPVAETTSLGEQ-----FGFNGTPTLVFPNGRTQSGYSPMPQLEEIIRKNQQ 139


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 96/256 (37%)

Query: 19  IASYFFYTRKGSALNELPIPDGVVDFRALLAASPSTMKDVSI-----GQKDAPVTMVEYA 73
           I +Y             P         AL  A      +  +     GQ +      +  
Sbjct: 123 IKNYI---TARIMAKR-PFDKKSNS--ALFRAVGE--GNAQLVAIFGGQGNT-----D-- 167

Query: 74  SMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYW 133
               F   E  +     L   Y        ++ +  +   +     L R           
Sbjct: 168 --DYF--EELRD-----LYQTY------HVLVGDL-IKFSAETLSELIRTTLDAEK---- 207

Query: 134 GFVSLLFNKQDD---WINSKNYR-D--------------ALLNMAKFA------GFSKND 169
                +F +  +   W+ + +   D               ++ +A +       GF+  +
Sbjct: 208 -----VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262

Query: 170 FDTCL-----NDQNILDDIKAGKKRAS---EDF------AIDSTPVFFIG--GNLYLGDM 213
             + L     + Q +   + A     +   E F      AI  T +FFIG        + 
Sbjct: 263 LRSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNT 317

Query: 214 SEGVFSKIIDSMIQDS 229
           S      +  S+++DS
Sbjct: 318 S------LPPSILEDS 327


>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
           oxidoreductase, oxidoreductase, protein disulfide
           isomerase, protein folding, thioredoxin; 2.4A
           {Escherichia coli} SCOP: c.47.1.13
          Length = 197

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 154 DALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDM 213
             + ++   AG    ++D   N   +   +   +K A  D  +   P  F+ G   L   
Sbjct: 7   SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAA-ADVQLRGVPAMFVNGKYQLNPQ 65

Query: 214 SEGVFSKII 222
                +  +
Sbjct: 66  GMDTSNMDV 74



 Score = 33.8 bits (77), Expect = 0.034
 Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 4/81 (4%)

Query: 63  KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDS--VSTVAVML 120
                 ++E+ S  C HC +F          K      ++            +       
Sbjct: 111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQA 170

Query: 121 ARCAEKRMDGGYWGFVSLLFN 141
              A     G        LF 
Sbjct: 171 WAVAMAL--GVEDKVTVPLFE 189


>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase
           SCO1869, structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
          Length = 239

 Score = 35.0 bits (79), Expect = 0.016
 Identities = 26/214 (12%), Positives = 52/214 (24%), Gaps = 17/214 (7%)

Query: 21  SYFFYTRKGSALNELPIPDGV-VDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFH 79
            Y    R   AL   P  DGV V  R+                       V+        
Sbjct: 16  CYVGKARFEKALAAFPHRDGVEVVHRSFE------------LDPGRAKDDVQPVLTMLTA 63

Query: 80  CAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLL 139
                 +  +  ED          +          +   +       +  G +   +   
Sbjct: 64  KYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERGRHEALLDAF 123

Query: 140 FNKQDDWINSKNYRDALLNMAKFAGFSKND--FDTCLNDQNILDDIKAGKKRASEDFAID 197
           +        S    D  L           +       +     D+++A ++ A++     
Sbjct: 124 YRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLG-AT 182

Query: 198 STPVFFIGGNLYL-GDMSEGVFSKIIDSMIQDST 230
             P F +     + G     VF++ +     + T
Sbjct: 183 GVPFFVLDRAYGVSGAQPAEVFTQALTQAWGERT 216


>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
           disulfide isomerase, protein folding, redox protein;
           2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
          Length = 211

 Score = 33.6 bits (76), Expect = 0.037
 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 41/172 (23%)

Query: 58  VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPL-DSVSTV 116
           +    K+    +  +  +TC +C   H +  +Y +        +RY+       ++ +  
Sbjct: 79  IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI----TVRYLAFPRAGMNNQTAK 134

Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLND 176
            +     A+                                  A       N        
Sbjct: 135 QMEAIWTAKDP------------------------------VFALNEAEKGNLPKEVKTP 164

Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKIIDSMIQ 227
             +    + G +     F +  TP      G L  G +      + ++   Q
Sbjct: 165 NIVKKHYELGIQ-----FGVRGTPSIVTSTGELIGGYLKPADLLRALEETAQ 211


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.15
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 184 KAGKK-RAS-EDFAIDSTPVFFIGGNL 208
           +A KK +AS + +A DS P   I   +
Sbjct: 20  QALKKLQASLKLYADDSAPALAIKATM 46



 Score = 29.2 bits (64), Expect = 0.84
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 92  EDKYIKTGKLRYILREFPLDSVSTVAV 118
           E + +K  KL+  L+ +  DS   +A+
Sbjct: 18  EKQALK--KLQASLKLYADDSAPALAI 42


>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein
           prenylation, metal-binding, prenyltransferase, zinc,
           phosphoprotein; 1.80A {Rattus norvegicus} SCOP:
           a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B*
           3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B*
           3hxf_B*
          Length = 331

 Score = 27.2 bits (60), Expect = 3.6
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 16/86 (18%)

Query: 94  KYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYR 153
            YI      Y  ++   +   +  +        RM G YWG   +    Q   +N +   
Sbjct: 25  DYIA----SYGSKKDDYEYCMSEYL--------RMSGVYWGLTVMDLMGQLHRMNKEEIL 72

Query: 154 DALLNMAK----FAGFSKNDFDTCLN 175
             + +        +    +D      
Sbjct: 73  VFIKSCQHECGGVSASIGHDPHLLYT 98


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,980,226
Number of extensions: 87737
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 36
Length of query: 232
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 143
Effective length of database: 3,535,514
Effective search space: 505578502
Effective search space used: 505578502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)