RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] (232 letters) >3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A Length = 202 Score = 116 bits (290), Expect = 6e-27 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 3/182 (1%) Query: 48 LAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILRE 107 ++ PS +G+ DAPVT+VE+ C C F++ F ++ +I G +++ Sbjct: 12 VSGQPSIKGQPVLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVN 71 Query: 108 FPLD-SVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMA-KFAGF 165 S +A + + K +W F LF KQ D L ++A Sbjct: 72 VMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKI 131 Query: 166 SKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSM 225 L+ + ++ + I +TP ++ + + I+ Sbjct: 132 KPETLKENLDKETFASQVEKDSDLN-QKMNIQATPTIYVNDKVIKNFADYDEIKETIEKE 190 Query: 226 IQ 227 ++ Sbjct: 191 LK 192 >3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis wmel} PDB: 3f4r_A* 3f4t_A* Length = 226 Score = 108 bits (270), Expect = 1e-24 Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 17/203 (8%) Query: 42 VDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKL 101 + LL P+ D +G AP+ M+EYAS+TC+HC+ FH F +++KYI TGK+ Sbjct: 19 ITSNELLLPLPN---DKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKM 75 Query: 102 RYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKN-YRDALLNMA 160 YI R FPLD A ML+ C EK+ D Y+ F +FN D W L +A Sbjct: 76 LYIFRHFPLDYRGLKAAMLSHCYEKQED--YFNFNKAVFNSIDSWNYYNLSDLTLLQRIA 133 Query: 161 KFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGN-----------LY 209 + ++ F+ C+ND+ I+D I K A I + P+FFI N + Sbjct: 134 ALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKH 193 Query: 210 LGDMSEGVFSKIIDSMIQDSTRR 232 G F+ +ID + + + Sbjct: 194 GGYKELKYFTNVIDKLYGKAIVK 216 >3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A Length = 186 Score = 105 bits (263), Expect = 6e-24 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 5/179 (2%) Query: 55 MKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVS 114 M + K+ +V Y C +C E K L YI K+ Y Sbjct: 1 MASATTSSKNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKD 60 Query: 115 TV-AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTC 173 ++ + + F LF Q D ++ L K K + Sbjct: 61 SIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKI 120 Query: 174 LNDQNILDDIKAGK----KRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQD 228 + D D K+ ++D I +TP FI G + K++ I+ Sbjct: 121 IKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIKL 179 >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, periplasm, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} Length = 192 Score = 97.6 bits (242), Expect = 2e-21 Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 6/170 (3%) Query: 54 TMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSV 113 + + + +VE C HC F + E +R + +V Sbjct: 14 ELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNV 73 Query: 114 STVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTC 173 + G + +F + + + G K F + Sbjct: 74 HGQMFLTLES-----MGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLST 128 Query: 174 LNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223 N I ++ KK A + + P + G S G + + Sbjct: 129 YNSFAIKGQMEKAKKLA-MAYQVTGVPTMVVNGKYRFDIGSAGGPEETLK 177 >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis V583} SCOP: c.47.1.13 Length = 175 Score = 96.2 bits (238), Expect = 6e-21 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 13/184 (7%) Query: 41 VVDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGK 100 +D + A +T + IG+ +APV M+E+ ++ C +C ++ + + L + +K+GK Sbjct: 3 AMDISVIDATKVNTETGLHIGESNAPVKMIEFINVRCPYCRKWF-EESEELLAQSVKSGK 61 Query: 101 LRYILREFPLDSVSTVAVMLARCAEKRMD-GGYWGFVSLLFNKQDDWINSKNYRDALLNM 159 + I++ F + S + + +F QD+W N + + Sbjct: 62 VERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGNLT--LEEVATY 119 Query: 160 AKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFS 219 A+ K D L I + A I P IG ++ ++E Sbjct: 120 AEKNLGLKEQKDATLVSAVIAEANAAH---------IQFVPTIIIGEYIFDESVTEEELR 170 Query: 220 KIID 223 I+ Sbjct: 171 GYIE 174 >3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans DSM12444} Length = 205 Score = 92.1 bits (227), Expect = 9e-20 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 26/195 (13%) Query: 57 DVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV 116 +G A + +VE+ S TC HC+ F ++ L+ ++ GK +R F D + Sbjct: 7 HHLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMT 66 Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDW-----------------------INSKNYR 153 ++ C ++ + Q W + Sbjct: 67 VALITNCVPPSR---FFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASD 123 Query: 154 DALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDM 213 + G ++ D CL+++ + + A A + + TP F I G L G Sbjct: 124 FRFYDFMAARGMDRSTLDRCLSNEALAKKLAAETDEAINQYNVSGTPSFMIDGILLAGTH 183 Query: 214 SEGVFSKIIDSMIQD 228 I + + + Sbjct: 184 DWASLRPQILARLNE 198 >3gyk_A 27KDA outer membrane protein; APC61738.2, thioredoxin-like, oxidoreductase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.76A {Silicibacter pomeroyi dss-3} Length = 175 Score = 91.8 bits (227), Expect = 1e-19 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 11/167 (6%) Query: 57 DVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTV 116 +G + VT+VE+ C +C ++ +R + RE+P+ + Sbjct: 14 APVLGNPEGDVTVVEFFDYNCPYCRRAM----AEVQGLVDADPNVRLVYREWPILGEGSD 69 Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLND 176 A R G Y F L +L +A+ G + Sbjct: 70 FAARAAL-AARQQGKYEAFHWALMGMSGKA-----NETGVLRIAREVGLDTEQLQRDMEA 123 Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223 + I A + + TP F + L G + + +D Sbjct: 124 PEVTAHIAQSMALA-QKLGFNGTPSFVVEDALVPGFVEQSQLQDAVD 169 >3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural genomics, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 182 Score = 91.2 bits (225), Expect = 2e-19 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 9/173 (5%) Query: 59 SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAV 118 ++ P + TC + K L +R L+ P S V V Sbjct: 8 ALSWGHGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIV 67 Query: 119 MLARCAEK--RMDGGYWGFVSLLFNKQDDWINSKN------YRDALLNMAKFAGFSKNDF 170 A ++ + + ++++ + +A+ +S Sbjct: 68 RCILAAATLEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLAL 127 Query: 171 DTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223 + + +K K A I +P F I G + G S SK + Sbjct: 128 AEAFANPELEHAVKWHTKYA-RQNGIHVSPTFMINGLVQPGMSSGDPVSKWVS 179 >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} Length = 193 Score = 85.0 bits (209), Expect = 1e-17 Identities = 22/172 (12%), Positives = 43/172 (25%), Gaps = 3/172 (1%) Query: 56 KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST 115 + +VE TC HCA F +K + + + Sbjct: 16 DGRPFAPLAGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFA 75 Query: 116 VAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLN 175 A + A + +++ D L G + F N Sbjct: 76 RAYLAADVLGV--AKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFN 133 Query: 176 DQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227 + +A + + TP + G + +I D ++ Sbjct: 134 GPEVEKRFQAARA-YALKVRPVGTPTIVVNGRYMVTGHDFEDTLRITDYLVS 184 >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Length = 195 Score = 83.7 bits (206), Expect = 4e-17 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 11/172 (6%) Query: 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119 + ++E+ + TC HCA + + KT +L++ P+ + Sbjct: 20 PSDTPGKIEVLEFFAYTCPHCAAIEPMV-----EDWAKTAPQDVVLKQVPIA-FNAGMKP 73 Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNI 179 L + +F + A+ A G + FD+ + ++ Sbjct: 74 LQQLYYTLQALERPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSV 133 Query: 180 LDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEG----VFSKIIDSMIQ 227 ++ + A E ID TP F +GG + G K++D +I Sbjct: 134 QTQVQRASQLA-EAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIV 184 >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, plasmid, oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} Length = 189 Score = 81.2 bits (199), Expect = 2e-16 Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 7/145 (4%) Query: 64 DAPVTMVEYASMTCFHCAEFHN--KTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLA 121 DAP +VE+ S C C F + + + ++ + A Sbjct: 14 DAPA-VVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWA 72 Query: 122 RCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILD 181 + F + D G S+ ++D + + D Sbjct: 73 LAM---VMKETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVND 129 Query: 182 DIKAGKKRASEDFAIDSTPVFFIGG 206 + ++ +++ + TP ++ G Sbjct: 130 MVALQERLF-KEYGVRGTPSVYVRG 153 >3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} Length = 195 Score = 80.1 bits (196), Expect = 4e-16 Identities = 24/186 (12%), Positives = 60/186 (32%), Gaps = 17/186 (9%) Query: 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVA 117 + +A T+++ S C C ++ + +K E + + Sbjct: 10 LEKPIPNADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQAS 69 Query: 118 VMLARC-------------AEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAG 164 + A A + + + + +K++ W + K+ + AG Sbjct: 70 EVFAVLINKDKAAGISLFDANSQFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAG 129 Query: 165 FSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL---GDMSEGVFSKI 221 S+ DF+ L + + + ++ K + I P + + G + S + + Sbjct: 130 MSQADFEAALKEPAVQETLEKWKASY-DVAKIQGVPAYVVNGKYLIYTKSIKSIDAMADL 188 Query: 222 IDSMIQ 227 I + Sbjct: 189 IRELAS 194 >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A Length = 193 Score = 79.6 bits (195), Expect = 5e-16 Identities = 23/169 (13%), Positives = 42/169 (24%), Gaps = 5/169 (2%) Query: 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119 Q+ V ++E+ C HCA K+ + Sbjct: 19 PQQQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEH---VVWQKEMLTLAR 75 Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALL-NMAKFAGFSKNDFDTCLNDQN 178 LA + S +F+ + + L + + F Sbjct: 76 LAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPE 135 Query: 179 ILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQ 227 ++ +E F ID P +GG + ID + Sbjct: 136 SQARADKMQE-LTETFQIDGVPTVIVGGKYKVEFADWESGMNTIDLLAD 183 >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio fischeri ES114} Length = 185 Score = 77.8 bits (190), Expect = 2e-15 Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 10/174 (5%) Query: 59 SIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAV 118 + + D + E +++C HC N ++ GK+ + + Sbjct: 16 TSLENDGMAPVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMFYYA 75 Query: 119 MLARCAEKRMDGGYWGFVSLLFNKQDDWINSK--NYRDALLNMAKFAGFSKNDFDTCLND 176 + F+ LF + ++A G Sbjct: 76 AEMQVDGAP----DHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQR 131 Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYL---GDMSEGVFSKIIDSMIQ 227 ++ + K SE I S P F + G + G + I +++ Sbjct: 132 DTLIKKVDNA-KMLSEKSGISSVPTFVVNGKYNVLIGGHDDPKQIADTIRYLLE 184 >3l9s_A Thiol:disulfide interchange protein DSBA; thioredoxin-fold, thiol-disulfide oxidoreductase, disulfide bond, periplasm; 1.58A {Salmonella enterica subsp} PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A Length = 191 Score = 76.5 bits (187), Expect = 5e-15 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 9/167 (5%) Query: 64 DAPVTMVEYASMTCFHCAEFHN--KTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLA 121 ++E+ S C HC +F ++ K + K+ EF + A Sbjct: 20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWA 79 Query: 122 RCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILD 181 ++ + + + + AG D+D N + Sbjct: 80 VAMALGVEDKVTVP----LFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKS 135 Query: 182 DIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIIDSMIQD 228 + +K A D + P F+ G + +G+ + +D +Q Sbjct: 136 LVAQQEKAA-ADLQLQGVPAMFVNGKYQIN--PQGMDTSSMDVFVQQ 179 >1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13 PDB: 2ijy_A Length = 181 Score = 74.3 bits (181), Expect = 2e-14 Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 4/161 (2%) Query: 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLAR 122 + + E+ S C HC F + + + K + F ++ Sbjct: 16 ASSSPVVSEFFSFYCPHCNTFEPIIAQLK-QQLPEGAKFQKNHVSFMGGNMGQAMSKAYA 74 Query: 123 CAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDD 182 V ++FN+ L + G FD N + Sbjct: 75 TMIAL--EVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSM 132 Query: 183 IKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGVFSKIID 223 ++ K+ +D + P + + S + D Sbjct: 133 VRRFDKQF-QDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFD 172 >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Length = 195 Score = 73.4 bits (179), Expect = 4e-14 Identities = 20/169 (11%), Positives = 46/169 (27%), Gaps = 6/169 (3%) Query: 60 IGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVM 119 ++ + ++E+ C HC F K + + + + + + Sbjct: 17 PQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVV-WQPEMLGLARMA 75 Query: 120 LARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNI 179 A ++ ++ N A GF + Sbjct: 76 AAVNLSGLKYQANPAVFKAVYEQKIRLENRS---VAGKWALSQKGFDGKKLMRAYDSPEX 132 Query: 180 LDDIKAGKKRASEDFAIDSTPVFFIGGNLYL-GDMSEGVFSKIIDSMIQ 227 ++ +E + IDSTP +GG + + I ++ Sbjct: 133 XXXXLKM-QKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVA 180 >1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active center; 1.90A {Escherichia coli} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 1ac1_A 1fvj_A 3dks_A 1bq7_A 1u3a_A* 1ti1_A* 2hi7_A* 2zup_A* 3e9j_B* 2b6m_A 2b3s_A Length = 189 Score = 70.4 bits (171), Expect = 3e-13 Identities = 22/166 (13%), Positives = 40/166 (24%), Gaps = 4/166 (2%) Query: 64 DAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARC 123 ++E+ S C C +F K ++ + Sbjct: 17 AGAPQVLEFFSFFCPSCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAW 76 Query: 124 AEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLNDQNILDDI 183 A G LF + ++ AG ++D N + + Sbjct: 77 AVAMALGVEDKVTVPLFEGVQKTQT-IRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLV 135 Query: 184 KAGKKRASEDFAIDSTPVFFIGGN--LYLGDMSEGVFSKIIDSMIQ 227 +K A D + P F+ G L M + Sbjct: 136 AQQEKAA-ADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYAD 180 >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A Length = 241 Score = 55.1 bits (132), Expect = 1e-08 Identities = 22/188 (11%), Positives = 52/188 (27%), Gaps = 36/188 (19%) Query: 45 RALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYI 104 + + G+KDAPV + +A C +C +F + ++ +GK++ Sbjct: 77 GREMWQRMEQSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQA-----RPWVDSGKVQLR 131 Query: 105 LREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAG 164 + + A I + + +G Sbjct: 132 TLLVGVIKPESPATA-------------------------AAILASKDPAKTWQQYEASG 166 Query: 165 FSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDMSEGV-----FS 219 + + +K +D + TP + + G+ + Sbjct: 167 GKLKLNVPANVSTEQMKVLSDNEKLM-DDLGANVTPAIYYMSKENTLQQAVGLPDQKTLN 225 Query: 220 KIIDSMIQ 227 I+ + +Q Sbjct: 226 IIMGNKLQ 233 >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A Length = 216 Score = 54.6 bits (131), Expect = 2e-08 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 41/191 (21%) Query: 45 RALLAASPSTMKDVSI--GQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLR 102 +L + ++ I + + +TC +C + H + + D +R Sbjct: 64 NKMLLKQLNALEKEMIVYKAPQEKHVITVFTDITCGYCHKLH----EQMADYNALGITVR 119 Query: 103 YILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKF 162 Y+ FP + + A + D DD + K+ A Sbjct: 120 YLA--FPRQGLDSDAEKEMKAIWCAKDKNKA---------FDDVMAGKSVAPA------- 161 Query: 163 AGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKI 221 +C D +I D G + + TP + G L G + Sbjct: 162 ---------SC--DVDIADHYALGVQ-----LGVSGTPAVVLSNGTLVPGYQPPKEMKEF 205 Query: 222 IDSMIQDSTRR 232 +D + ++ + Sbjct: 206 LDEHQKMTSGK 216 >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain ATCC 700825 / FA 1090), DSBC, structural genomics, unknown function; 2.00A {Neisseria gonorrhoeae fa 1090} Length = 147 Score = 43.6 bits (102), Expect = 4e-05 Identities = 19/173 (10%), Positives = 40/173 (23%), Gaps = 39/173 (22%) Query: 56 KDVSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVST 115 K + + + + + ++ C C ++ K + +++ L + Sbjct: 5 KAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKMTDVTVY-----SFMMPIAGLHPDAA 59 Query: 116 VAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLN 175 + C R G C Sbjct: 60 RKAQILWCQPDRAK--------------------------AWTDWMRKGKFPVGGSIC-- 91 Query: 176 DQNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKIIDSMIQ 227 D + + G++ F + TP G G +II Q Sbjct: 92 DNPVAETTSLGEQ-----FGFNGTPTLVFPNGRTQSGYSPMPQLEEIIRKNQQ 139 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 40.7 bits (95), Expect = 3e-04 Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 96/256 (37%) Query: 19 IASYFFYTRKGSALNELPIPDGVVDFRALLAASPSTMKDVSI-----GQKDAPVTMVEYA 73 I +Y P AL A + + GQ + + Sbjct: 123 IKNYI---TARIMAKR-PFDKKSNS--ALFRAVGE--GNAQLVAIFGGQGNT-----D-- 167 Query: 74 SMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYW 133 F E + L Y ++ + + + L R Sbjct: 168 --DYF--EELRD-----LYQTY------HVLVGDL-IKFSAETLSELIRTTLDAEK---- 207 Query: 134 GFVSLLFNKQDD---WINSKNYR-D--------------ALLNMAKFA------GFSKND 169 +F + + W+ + + D ++ +A + GF+ + Sbjct: 208 -----VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262 Query: 170 FDTCL-----NDQNILDDIKAGKKRAS---EDF------AIDSTPVFFIG--GNLYLGDM 213 + L + Q + + A + E F AI T +FFIG + Sbjct: 263 LRSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNT 317 Query: 214 SEGVFSKIIDSMIQDS 229 S + S+++DS Sbjct: 318 S------LPPSILEDS 327 >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 Length = 197 Score = 40.3 bits (94), Expect = 4e-04 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%) Query: 154 DALLNMAKFAGFSKNDFDTCLNDQNILDDIKAGKKRASEDFAIDSTPVFFIGGNLYLGDM 213 + ++ AG ++D N + + +K A D + P F+ G L Sbjct: 7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAA-ADVQLRGVPAMFVNGKYQLNPQ 65 Query: 214 SEGVFSKII 222 + + Sbjct: 66 GMDTSNMDV 74 Score = 33.8 bits (77), Expect = 0.034 Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 4/81 (4%) Query: 63 KDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPLDS--VSTVAVML 120 ++E+ S C HC +F K ++ + Sbjct: 111 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQA 170 Query: 121 ARCAEKRMDGGYWGFVSLLFN 141 A G LF Sbjct: 171 WAVAMAL--GVEDKVTVPLFE 189 >3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase SCO1869, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} Length = 239 Score = 35.0 bits (79), Expect = 0.016 Identities = 26/214 (12%), Positives = 52/214 (24%), Gaps = 17/214 (7%) Query: 21 SYFFYTRKGSALNELPIPDGV-VDFRALLAASPSTMKDVSIGQKDAPVTMVEYASMTCFH 79 Y R AL P DGV V R+ V+ Sbjct: 16 CYVGKARFEKALAAFPHRDGVEVVHRSFE------------LDPGRAKDDVQPVLTMLTA 63 Query: 80 CAEFHNKTFKYLEDKYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLL 139 + + ED + + + + G + + Sbjct: 64 KYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERGRHEALLDAF 123 Query: 140 FNKQDDWINSKNYRDALLNMAKFAGFSKND--FDTCLNDQNILDDIKAGKKRASEDFAID 197 + S D L + + D+++A ++ A++ Sbjct: 124 YRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLG-AT 182 Query: 198 STPVFFIGGNLYL-GDMSEGVFSKIIDSMIQDST 230 P F + + G VF++ + + T Sbjct: 183 GVPFFVLDRAYGVSGAQPAEVFTQALTQAWGERT 216 >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 Length = 211 Score = 33.6 bits (76), Expect = 0.037 Identities = 19/172 (11%), Positives = 43/172 (25%), Gaps = 41/172 (23%) Query: 58 VSIGQKDAPVTMVEYASMTCFHCAEFHNKTFKYLEDKYIKTGKLRYILREFPL-DSVSTV 116 + K+ + + +TC +C H + +Y + +RY+ ++ + Sbjct: 79 IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI----TVRYLAFPRAGMNNQTAK 134 Query: 117 AVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYRDALLNMAKFAGFSKNDFDTCLND 176 + A+ A N Sbjct: 135 QMEAIWTAKDP------------------------------VFALNEAEKGNLPKEVKTP 164 Query: 177 QNILDDIKAGKKRASEDFAIDSTPVFFIG-GNLYLGDMSEGVFSKIIDSMIQ 227 + + G + F + TP G L G + + ++ Q Sbjct: 165 NIVKKHYELGIQ-----FGVRGTPSIVTSTGELIGGYLKPADLLRALEETAQ 211 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.15 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Query: 184 KAGKK-RAS-EDFAIDSTPVFFIGGNL 208 +A KK +AS + +A DS P I + Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46 Score = 29.2 bits (64), Expect = 0.84 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Query: 92 EDKYIKTGKLRYILREFPLDSVSTVAV 118 E + +K KL+ L+ + DS +A+ Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAI 42 >3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* Length = 331 Score = 27.2 bits (60), Expect = 3.6 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 16/86 (18%) Query: 94 KYIKTGKLRYILREFPLDSVSTVAVMLARCAEKRMDGGYWGFVSLLFNKQDDWINSKNYR 153 YI Y ++ + + + RM G YWG + Q +N + Sbjct: 25 DYIA----SYGSKKDDYEYCMSEYL--------RMSGVYWGLTVMDLMGQLHRMNKEEIL 72 Query: 154 DALLNMAK----FAGFSKNDFDTCLN 175 + + + +D Sbjct: 73 VFIKSCQHECGGVSASIGHDPHLLYT 98 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.410 Gapped Lambda K H 0.267 0.0438 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,980,226 Number of extensions: 87737 Number of successful extensions: 340 Number of sequences better than 10.0: 1 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 36 Length of query: 232 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 143 Effective length of database: 3,535,514 Effective search space: 505578502 Effective search space used: 505578502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.7 bits)