RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780478|ref|YP_003064891.1| hypothetical protein
CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62]
         (161 letters)



>gnl|CDD|185176 PRK15273, PRK15273, putative fimbrial outer membrane usher protein
           SteB; Provisional.
          Length = 881

 Score = 27.8 bits (61), Expect = 1.2
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 21/74 (28%)

Query: 9   DDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQ---------D 59
           D +L P LR  A           EIVG  IAR     K+ W  R   E Q         D
Sbjct: 261 DQMLPPKLRGYA----------PEIVG--IARSNAKVKVSWQGRVLYETQVPAGPFRIQD 308

Query: 60  ISSDVSGTLIIACE 73
           ++  VSGTL +  E
Sbjct: 309 LNQSVSGTLHVTVE 322


>gnl|CDD|132293 TIGR03249, KdgD, 5-dehydro-4-deoxyglucarate dehydratase.
           5-dehydro-4-deoxyglucarate dehydratase not only
           catalyzes the dehydration of the substrate (diol to
           ketone + water), but causes the decarboxylation of the
           intermediate product to yield 2-oxoglutarate
           semialdehyde (2,5-dioxopentanoate). The gene for the
           enzyme is usually observed in the vicinity of
           transporters and dehydratases handling D-galactarate and
           D-gluconate as well as aldehyde dehydrogenases which
           convert the product to alpha-ketoglutarate.
          Length = 296

 Score = 26.6 bits (59), Expect = 3.2
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 6   QVIDDLLDPFL---RRRAGISMSLVSAWSEIVGSNI 38
           ++  + + P      R+ G ++S++ A  EIVG   
Sbjct: 235 EIYKEFILPINEIRNRKKGYAVSIIKAGMEIVGLPA 270


>gnl|CDD|179610 PRK03620, PRK03620, 5-dehydro-4-deoxyglucarate dehydratase;
           Provisional.
          Length = 303

 Score = 26.3 bits (59), Expect = 3.4
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)

Query: 8   IDDLLDPFLR---RRAGISMSLVSAWSEIVG 35
           +DD   P++    R+ G ++S+V A + +VG
Sbjct: 239 LDDFFLPYVALRNRKKGYAVSIVKAGARLVG 269


>gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
          Length = 466

 Score = 26.0 bits (58), Expect = 4.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 132 IDKMTEGIKDEQLKRALIR 150
           + ++T G  DE L R LIR
Sbjct: 75  LLRVTGGRTDEALARLLIR 93


>gnl|CDD|149819 pfam08878, DUF1837, Domain of unknown function (DUF1837).  This
           family of proteins are functionally uncharacterized.
          Length = 236

 Score = 26.1 bits (58), Expect = 4.8
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 99  AIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRF 151
           AIK   +L  +  + N+     +P L   DC+      E  + +  K+ +   
Sbjct: 158 AIKD--YLDPNSPLDNKKNKRGVPCLIGFDCDAYPAHPEHQEIDDYKKEIKNE 208


>gnl|CDD|129695 TIGR00607, rad52, recombination protein rad52.  This family is
           based on the phylogenomic analysis of JA Eisen (1999,
           Ph.D. Thesis, Stanford University).
          Length = 161

 Score = 25.2 bits (55), Expect = 7.9
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 8/38 (21%)

Query: 123 ALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGCSY 160
           A EK   +K     E + D  LKRAL  FG+A+  C Y
Sbjct: 101 AFEK--AKK-----EAVTD-ALKRALRNFGNALGNCLY 130


>gnl|CDD|182977 PRK11121, nrdG, anaerobic ribonucleotide reductase-activating
           protein; Provisional.
          Length = 154

 Score = 25.3 bits (56), Expect = 8.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 6   QVIDDLLDPFLRRRAGISMS--------LVSAWSEIVGSNIARCCRPEKIIW 49
           Q+I DL D  ++R+ G+S+S         V    ++V    A C  P K IW
Sbjct: 54  QIIADLNDTRIKRQ-GLSLSGGDPLHPQNVPDILKLVQRVKAEC--PGKDIW 102


>gnl|CDD|151213 pfam10727, Rossmann-like, Rossmann-like domain.  This family of
           proteins contain a Rossmann-like domain.
          Length = 111

 Score = 24.9 bits (54), Expect = 9.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 144 LKRALIRFGHAVVGCS 159
           L  AL R GH V   S
Sbjct: 12  LGEALERAGHVVHAIS 27


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,636,946
Number of extensions: 154553
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 14
Length of query: 161
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,136,185
Effective search space: 310213875
Effective search space used: 310213875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)