RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780478|ref|YP_003064891.1| hypothetical protein
CLIBASIA_01815 [Candidatus Liberibacter asiaticus str. psy62]
         (161 letters)



>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast,
           collagen degradation; 1.90A {Homo sapiens} (A:84-221)
          Length = 138

 Score = 24.5 bits (52), Expect = 8.1
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 1/86 (1%)

Query: 2   IHFSQVIDDLLDPFLRRRAGI-SMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60
           + FS++ +   D  +                  V ++                  +    
Sbjct: 47  LTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKD 106

Query: 61  SSDVSGTLIIACEGSHALFLMHDQSK 86
           ++  +  L+ A E  H+L L H  + 
Sbjct: 107 TTGTNLFLVAAHEIGHSLGLFHSANT 132


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0775    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,228,237
Number of extensions: 50337
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 3
Length of query: 161
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 79
Effective length of database: 2,184,039
Effective search space: 172539081
Effective search space used: 172539081
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)