HHsearch alignment for GI: 254780479 and conserved domain: COG0177
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].
Probab=100.00 E-value=1.6e-39 Score=298.89 Aligned_cols=181 Identities=27% Similarity=0.466 Sum_probs=166.8
Q ss_pred CCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 870467664467311612033265899877489978987299899999974046345-8899987767543005786873
Q gi|254780479|r 37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYT-RARNLKKCADIIVKKYEGNFPH 115 (356)
Q Consensus 37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~-Rar~l~~~a~~i~~~~~g~~P~ 115 (356)
T Consensus 27 ~~pf~lLva~iLSaqttD~~vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr~KAk~I~~~~~~l~e~~~g~vP~ 106 (211)
T COG0177 27 KDPFELLVAVILSAQTTDEVVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYRNKAKNIKELARILLEKFGGEVPD 106 (211)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 88389999999944674488999999999975999999749999999999863871899999999999999974999981
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 14568888877787766776643496313124314666576519754573568999874102578522678999999998
Q gi|254780479|r 116 KVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLG 195 (356)
Q Consensus 116 ~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlG 195 (356)
T Consensus 107 ~~~eL~~LPGVGrKTAnvVL~~a~g~p~i~VDTHV~Rvs~R~gl~~~~---~p~~ve~~L~~~iP~~~~~~~h~~lI~~G 183 (211)
T COG0177 107 TREELLSLPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNRLGLVPGK---TPEEVEEALMKLIPKELWTDLHHWLILHG 183 (211)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC---CHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 599997489966577898998655998652124299999984778899---99999999999789788999999999960
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 6320412356431100000134310
Q gi|254780479|r 196 ALICTSNKPLCPLCPIQKNCLTFSE 220 (356)
Q Consensus 196 a~iC~p~~P~C~~Cpl~~~C~~~~~ 220 (356)
T Consensus 184 R~iC~ar~P~C~~C~l~~~C~~~~~ 208 (211)
T COG0177 184 RYICKARKPRCEECPLADLCPSAGK 208 (211)
T ss_pred HHHCCCCCCCCCCCCCHHHCCHHCC
T ss_conf 5311689998675646554811100