HHsearch alignment for GI: 254780479 and conserved domain: COG1194
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=764.26 Aligned_cols=330 Identities=42% Similarity=0.729 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHH
Q ss_conf 68999999999996289988754855444567870467664467311612033265899877489978987299899999
Q gi|254780479|r 5 EHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILS 84 (356)
Q Consensus 5 ~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~ 84 (356)
T Consensus 8 ~~~~~~~ll~Wy~~~~R~LPWR~~--------~~PY~VwvSEiMLQQT~v~~Vi~yy~~fl~rfPti~~LA~A~~~evl~ 79 (342)
T COG1194 8 IEKFQEALLDWYDKNGRDLPWRET--------KDPYRVWVSEIMLQQTQVATVIPYYERFLERFPTIKALAAAPEDEVLK 79 (342)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCC--------CCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
T ss_conf 578888999999974874887789--------986220268887600607455456999998689989986688889999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCC
Q ss_conf 97404634588999877675430057868731456888887778776677664349631312431466657651975457
Q gi|254780479|r 85 AWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPA 164 (356)
Q Consensus 85 ~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~ 164 (356)
T Consensus 80 ~W~gLGYysRArnL~~~A~~v~~~~~G~~P~~~~~l~~LpGiG~yTa~Ail~~a~~~~~~~lDgNV~RVl~R~f~i~~~~ 159 (342)
T COG1194 80 AWEGLGYYSRARNLHKAAQEVVERHGGEFPDDEEELAALPGVGPYTAGAILSFAFNQPEPVLDGNVKRVLSRLFAISGDI 159 (342)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEECCHHEEEHHHHCCCCCC
T ss_conf 98716737899999999999999819979999999986789738899999998718987533054221126653143655
Q ss_pred C--HHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 3--568999874102578522-6789999999986320412356431100000134310110012344322222211232
Q gi|254780479|r 165 P--LYHKTIKNYARKITSTSR-PGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA 241 (356)
Q Consensus 165 ~--~~~k~l~~~~~~~~~~~~-~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~ 241 (356)
T Consensus 160 ~~~~~~~~~~~~~~~ll~p~~~~~~fnqammdlGA~ICt~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~-~~~~ 238 (342)
T COG1194 160 GKPKTKKELWELAEQLLTPDRRPGDFNQAMMDLGATICTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLP-RRFA 238 (342)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-HHEE
T ss_conf 654105899999997448988767999999986367615899987739466889999819964478766554551-0033
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEEEEEEEEEEEEEECCCCC
Q ss_conf 00034137605776457201320474421111346721588863010100002137358998315999999999807767
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFTHFTLTLFVWKTIVPQIV 321 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~~~~~~~ 321 (356)
T Consensus 239 ~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~~~~~~~~~~~~~~----~~~~~~~H~fth~~l~i~-~~a~~~~-~ 312 (342)
T COG1194 239 AFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEADLLDWLAADGLAA----EPLGAFRHTFTHFRLTIE-LRASASL-V 312 (342)
T ss_pred EEEEECCCCCHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCC----CCCCCEEEEEEEEEEEEE-EEEECCC-C
T ss_conf 577870685316662765672211120564343320466765413210----124312434668999999-9863246-7
Q ss_pred CCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf 66781332278887479987899999844
Q gi|254780479|r 322 IIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356)
Q Consensus 322 ~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356)
T Consensus 313 ~~-~~~w~~~~~~~~~~l~~p~~k~l~~~ 340 (342)
T COG1194 313 LS-DGRWYNLSDLESIGLPAPVKKLLQQL 340 (342)
T ss_pred CC-CCEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 88-73451634443135527999999873