HHsearch alignment for GI: 254780479 and conserved domain: COG2231

>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].
Probab=99.62  E-value=1.3e-14  Score=123.33  Aligned_cols=178  Identities=23%  Similarity=0.361  Sum_probs=140.1

Q ss_pred             CHHHHHHHHHHHHHCCHHHCCHHHHHHHHH-CCCHHHHHCCCHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHCCC---CC
Q ss_conf             704676644673116120332658998774-89978987299899999974046345-88999877675430057---86
Q gi|254780479|r   38 SPYKVWISEIMLQQTTVKTVEPYFKKFMQK-WPTIFCLSSAKDEEILSAWAGLGYYT-RARNLKKCADIIVKKYE---GN  112 (356)
Q Consensus        38 ~py~v~vseimlqqT~v~~v~~~~~~~~~~-~P~~~~la~a~~~~vl~~w~gLGyy~-Rar~l~~~a~~i~~~~~---g~  112 (356)
T Consensus        29 ~~~EiiigAILtQNT~WknvekAlenLk~~~~~~l~~I~~~~~~~L~elIrpsGFYnqKa~rLk~l~k~l~~~~~~~~~~  108 (215)
T COG2231          29 NKDEIIIGAILTQNTSWKNVEKALENLKNEGILNLKKILKLDEEELAELIRPSGFYNQKAKRLKALSKNLAKFFINLESF  108 (215)
T ss_pred             CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             72068998898524529999999999988156799998458999999987042408999999999999999986423111


Q ss_pred             CCC-HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC--HHHHHH
Q ss_conf             873-14568888877787766776643496313124314666576519754573568999874102578522--678999
Q gi|254780479|r  113 FPH-KVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKITSTSR--PGDFVQ  189 (356)
Q Consensus       113 ~P~-~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~~~~~--~~~~nQ  189 (356)
T Consensus       109 ~~~~~R~~LL~iKGIG~ETaDsILlYa~~rp~FVvD~YtrR~l~rlg~i~~k-~--ydeik~~fe~~l~~~~~lyqe~HA  185 (215)
T COG2231         109 KSEVLREELLSIKGIGKETADSILLYALDRPVFVVDKYTRRLLSRLGGIEEK-K--YDEIKELFEENLPENLRLYQEFHA  185 (215)
T ss_pred             CHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC-C--HHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             5188999987268866223999999980486446329999999994551025-4--999999998535067999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             999998632041235643110000013431
Q gi|254780479|r  190 AMMDLGALICTSNKPLCPLCPIQKNCLTFS  219 (356)
Q Consensus       190 AlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~  219 (356)
T Consensus       186 lIv~~~K~f~~k~-~~~~~cpL~~~~~~~~  214 (215)
T COG2231         186 LIVEHAKHFCKKK-PLCEKCPLKEKCKKYR  214 (215)
T ss_pred             HHHHHHHHHCCCC-CCCCCCHHHHHHHHCC
T ss_conf             9999999981588-6778765899875226