HHsearch alignment for GI: 254780479 and conserved domain: PRK10880
>PRK10880 adenine DNA glycosylase; Provisional.
Probab=100.00 E-value=0 Score=860.79 Aligned_cols=341 Identities=32% Similarity=0.584 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHH
Q ss_conf 68999999999996289-98875485544456787046766446731161203326589987748997898729989999
Q gi|254780479|r 5 EHIIQSKILDWYDTNHR-VLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEIL 83 (356)
Q Consensus 5 ~~~~~~~ll~w~~~~~R-~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl 83 (356)
T Consensus 3 ~~~f~~~ll~Wy~~~~r~~lPWr~~--------~~PY~vwvSEiMLQQTqv~tV~~yy~rf~~~fP~~~~LA~A~~~~vl 74 (350)
T PRK10880 3 ASQFSAQVLDWYDKYGRKTLPWQID--------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVL 74 (350)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC--------CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
T ss_conf 7999999999998739988998999--------98226999999983487789999999999988399999779999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC
Q ss_conf 99740463458899987767543005786873145688888777877667766434963131243146665765197545
Q gi|254780479|r 84 SAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP 163 (356)
Q Consensus 84 ~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~ 163 (356)
T Consensus 75 ~~W~GLGYY~RArnLh~aA~~i~~~~~G~~P~~~~~L~~LPGIG~yTA~AI~siaf~~~~~ivDgNV~RVlsR~~~i~~~ 154 (350)
T PRK10880 75 HLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGW 154 (350)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 98640693899999999999999975898982599986266887279999999976995357664403288887503368
Q ss_pred C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 7--35689998741025785226789999999986320412356431100000134310110012344322222211232
Q gi|254780479|r 164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA 241 (356)
Q Consensus 164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~ 241 (356)
T Consensus 155 ~~~~~~~~~l~~~a~~~~p~~~~~~~nQAlMDLGA~vCtp~~P~C~~CPl~~~C~A~~~~~~~~~P~kk~kk~~p~~~~~ 234 (350)
T PRK10880 155 PGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMVCTRSKPKCELCPLQNGCIAAANHSWALYPGKKPKQTLPERTGY 234 (350)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCEEEEE
T ss_conf 87559999999999973884327799999999734102799998788988220646427985655886788988779999
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEEEEEEEEEEEEEECCCC-
Q ss_conf 0003413760577645720132047442111134672158886301010000213735899831599999999980776-
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFTHFTLTLFVWKTIVPQI- 320 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~~~~~~- 320 (356)
T Consensus 235 -~~ii~~~~~ill~kR~~~giw~gLw~fP~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~H~FSHf~L~I~p~~~~~~~~~ 312 (350)
T PRK10880 235 -FLLLQHEDEVWLAQRPPSGLWGGLYCFPQFADEEELRQWLAQR-GINADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFT 312 (350)
T ss_pred -EEEEEECCEEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHC-CCCCCCCEECCCEEEEEECEEEEEEEEEEEECCCC
T ss_conf -9999509989998379777345445488888677899999982-89810001147625841060767389999814500
Q ss_pred --CCCCCCEEECHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf --76678133227888747998789999984482379
Q gi|254780479|r 321 --VIIPDSTWHDAQNLANAALPTVMKKALSAGGIKVP 355 (356)
Q Consensus 321 --~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~~~p 355 (356)
T Consensus 313 ~~~~~~~~~W~~~~~~~~~GLPaPvkKiL~~L~~~~~ 349 (350)
T PRK10880 313 GCMDEGNALWYNLAQPPSVGLAAPVERLLQQLRTGAP 349 (350)
T ss_pred CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 1355667856444530204787899999997140489