HHsearch alignment for GI: 254780479 and conserved domain: PRK13910
>PRK13910 DNA glycosylase MutY; Provisional.
Probab=100.00 E-value=0 Score=684.27 Aligned_cols=285 Identities=30% Similarity=0.503 Sum_probs=248.6
Q ss_pred HHHHHCCHHHCCH-HHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 6731161203326-589987748997898729989999997404634588999877675430057868731456888887
Q gi|254780479|r 47 IMLQQTTVKTVEP-YFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPG 125 (356)
Q Consensus 47 imlqqT~v~~v~~-~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpG 125 (356)
T Consensus 1 iMLQQTqv~tvip~y~~~f~~~fP~~~~la~a~~~~vl~~W~GLGYY~RArnl~~~a~~i~~~~~g~~P~~~~~L~~LPG 80 (290)
T PRK13910 1 VMSQQTQINTVVERFYSPFLEAFPTLKDLANAQLEEVLLLWRGLGYYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPG 80 (290)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
T ss_conf 96885742100578999999988399999778999999998746848999999999999999838989852999975889
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77877667766434963131243146665765197545735689998741025785226789999999986320412356
Q gi|254780479|r 126 IGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPL 205 (356)
Q Consensus 126 iG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~ 205 (356)
T Consensus 81 IG~yTA~AI~siaf~~~~~~vDgNv~RVl~R~~~~~~~~~--~k~~~~~~~~~~~~~~~~~~nqalMdlGa~iC~pk-P~ 157 (290)
T PRK13910 81 IGAYTANAILCFGFREKSACVDANIKRVLLRLFGLDPNIH--AKDLQIKANDFLNLNESFNHNQALIDLGALICSPK-PK 157 (290)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHEEEEHHHCCCCCCC--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-CC
T ss_conf 9826999999986476332000452014102324789946--69999999982595422689999998633343799-99
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 43110000013431011001234432222221123200034137605776457201320474421111346721588863
Q gi|254780479|r 206 CPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTH 285 (356)
Q Consensus 206 C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~ 285 (356)
T Consensus 158 C~~CPl~~~C~a~--~~~~~~~~kkkkk~~~~~-~~~~~-i~~~~~ilL~k~-~~~~~~Glw~fP~~ke~~~-------- 224 (290)
T PRK13910 158 CAICPFNPYCLGK--NHPEKHTLKKKQEIIQEE-RYLGV-VIQNNQIALEKI-EQKLYLGMHHFPNLKENLE-------- 224 (290)
T ss_pred CCCCCCHHHHHCC--CCCCCCCCCCCCCCCCCE-EEEEE-EEECCEEEEEEC-CCCCCCCCCCCCCCCCCCC--------
T ss_conf 8779795552315--876446888887677620-69999-998999999817-8866677665999875556--------
Q ss_pred CCCCCCCCEECCCEEEEEEEEEEEEEEEEEECCCCCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 010100002137358998315999999999807767667813322788874799878999998448237
Q gi|254780479|r 286 SAPFTANWILCNTITHTFTHFTLTLFVWKTIVPQIVIIPDSTWHDAQNLANAALPTVMKKALSAGGIKV 354 (356)
Q Consensus 286 ~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~~~~~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~~~ 354 (356)
T Consensus 225 -----~~~~~l~~ikH~fTH~kl~i~v~~~~~k~~--~~~~~W~~l~el~~l~lps~~kKIL~~Lk~~~ 286 (290)
T PRK13910 225 -----FKLPFLGAIKHSHTKFKLNLNLYLAAIKDL--KNPIRFYSLKDLETLPISSMTLKILNFLKQKN 286 (290)
T ss_pred -----CCHHHHHHCEEEEEEEEEEEEEEEEHHHCC--CCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf -----540233000001565779999998541058--98774316777520889828999999997745