HHsearch alignment for GI: 254780479 and conserved domain: TIGR01084
>TIGR01084 mutY A/G-specific adenine glycosylase; InterPro: IPR005760 The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-OxoG). 8-OxoG can mispair with 2'-deoxycytidine 5'-triphosphate or with 2'-deoxyadenosine triphosphate during DNA replication, forming C*8-oxoG and A*8-oxoG mispairs. Human MutY is responsible for recognition and removal of the inappropriately inserted adenine in an A=8-oxoG mispair. If unrepaired, the A=8-oxoG mispairs can result in deleterious C:G to A:T transversions. Multiple forms of mammalian MutY are formed by alternative splicing and locate to the nucleus or mitochondrion, where they have been shown to interact with several other proteins involved in the repair of DNA damage . The HhH-GPD domain within the protein binds the phosphate backbone of the substrate. This family represents bacterial MutY and a limited number of murine homologs. In rat, the Escherichia coli MutY DNA glycosylase homolog (MYH) is induced in response to mitochondrial DNA damage . ; GO: 0019104 DNA N-glycosylase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=100.00 E-value=0 Score=805.38 Aligned_cols=275 Identities=39% Similarity=0.756 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHCCC-CCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCHHHCCH-HHHHHHHHCCCHHHHHCCCHH
Q ss_conf 999999999996289-988754855----44456787046766446731161203326-589987748997898729989
Q gi|254780479|r 7 IIQSKILDWYDTNHR-VLPWRTSPK----TEKSSLPSPYKVWISEIMLQQTTVKTVEP-YFKKFMQKWPTIFCLSSAKDE 80 (356)
Q Consensus 7 ~~~~~ll~w~~~~~R-~lpwr~~~~----~~~~~~~~py~v~vseimlqqT~v~~v~~-~~~~~~~~~P~~~~la~a~~~ 80 (356)
T Consensus 1 ~f~~~ll~Wy~~~gRk~LPWr~~~~~~cdeslkhi~~pY~VW~SEvMLQQTqV~tV~prYf~rFle~FPTv~~LA~A~~d 80 (297)
T TIGR01084 1 QFREDLLSWYDKEGRKTLPWRQNKNQRCDESLKHIDDPYRVWVSEVMLQQTQVATVIPRYFERFLERFPTVQALANAPQD 80 (297)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHCCCHHHHHCCCHH
T ss_conf 93788999998717867887478755424577522354514400211001100112671004766427885787477965
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCC
Q ss_conf 99999740463458899987767543005786873145688888777877667766434963131243146665765197
Q gi|254780479|r 81 EILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDI 160 (356)
Q Consensus 81 ~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~ 160 (356)
T Consensus 81 eVL~lW~GLGYYaRARNL~kAA~~v~~~fGG~fP~d~~~~~~L~GVG~yTAgAils~a~~~~~p~~DGNV~RVLsR~fA~ 160 (297)
T TIGR01084 81 EVLKLWEGLGYYARARNLHKAAQEVVEEFGGEFPQDLEDLKALPGVGRYTAGAILSFAYNKPVPILDGNVKRVLSRLFAV 160 (297)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 79998625786788899999999999871881772379785178976217999999872687620154078899999862
Q ss_pred CCCC--CHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5457--3568999874102578-522678999999998632041235643110000013431011001234432222221
Q gi|254780479|r 161 IKPA--PLYHKTIKNYARKITS-TSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPM 237 (356)
Q Consensus 161 ~~~~--~~~~k~l~~~~~~~~~-~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~ 237 (356)
T Consensus 161 ~~~~~~k~~e~~l~~~~~~llpe~~~~~~~nqalmDlGA~iC~rk~P~C~~CPl~~~C~A~~~~~~~~yP~kk~~~~~~~ 240 (297)
T TIGR01084 161 EGWPGKKKVENRLWELAESLLPEKADPEAFNQALMDLGALICTRKKPKCDLCPLQDFCLAYKQGTPEEYPVKKKKKAPPE 240 (297)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCHHH
T ss_conf 48988734889999999985886568658888998623610378478545487066555654277111678773100012
Q ss_pred EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 12320003413760577645720132047442111134672158
Q gi|254780479|r 238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGN 281 (356)
Q Consensus 238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~ 281 (356)
T Consensus 241 ~~~~~l~l~~~d~~~~~~~r~~~~l~gGLy~fP~~~~~kG~~~~ 284 (297)
T TIGR01084 241 RTTYFLVLLNEDGEVLLEQRPEKGLWGGLYCFPQFELEKGIKEE 284 (297)
T ss_pred HHEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 01012234414870576663766410010036525532013578