HHsearch alignment for GI: 254780479 and conserved domain: TIGR01084

>TIGR01084 mutY A/G-specific adenine glycosylase; InterPro: IPR005760 The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-OxoG). 8-OxoG can mispair with 2'-deoxycytidine 5'-triphosphate or with 2'-deoxyadenosine triphosphate during DNA replication, forming C*8-oxoG and A*8-oxoG mispairs. Human MutY is responsible for recognition and removal of the inappropriately inserted adenine in an A=8-oxoG mispair. If unrepaired, the A=8-oxoG mispairs can result in deleterious C:G to A:T transversions. Multiple forms of mammalian MutY are formed by alternative splicing and locate to the nucleus or mitochondrion, where they have been shown to interact with several other proteins involved in the repair of DNA damage . The HhH-GPD domain within the protein binds the phosphate backbone of the substrate. This family represents bacterial MutY and a limited number of murine homologs. In rat, the Escherichia coli MutY DNA glycosylase homolog (MYH) is induced in response to mitochondrial DNA damage . ; GO: 0019104 DNA N-glycosylase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=100.00  E-value=0  Score=805.38  Aligned_cols=275  Identities=39%  Similarity=0.756  Sum_probs=259.0

Q ss_pred             HHHHHHHHHHHHCCC-CCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHCCHHHCCH-HHHHHHHHCCCHHHHHCCCHH
Q ss_conf             999999999996289-988754855----44456787046766446731161203326-589987748997898729989
Q gi|254780479|r    7 IIQSKILDWYDTNHR-VLPWRTSPK----TEKSSLPSPYKVWISEIMLQQTTVKTVEP-YFKKFMQKWPTIFCLSSAKDE   80 (356)
Q Consensus         7 ~~~~~ll~w~~~~~R-~lpwr~~~~----~~~~~~~~py~v~vseimlqqT~v~~v~~-~~~~~~~~~P~~~~la~a~~~   80 (356)
T Consensus         1 ~f~~~ll~Wy~~~gRk~LPWr~~~~~~cdeslkhi~~pY~VW~SEvMLQQTqV~tV~prYf~rFle~FPTv~~LA~A~~d   80 (297)
T TIGR01084         1 QFREDLLSWYDKEGRKTLPWRQNKNQRCDESLKHIDDPYRVWVSEVMLQQTQVATVIPRYFERFLERFPTVQALANAPQD   80 (297)
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCHHHHHHCCCHHHHHCCCHH
T ss_conf             93788999998717867887478755424577522354514400211001100112671004766427885787477965


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCC
Q ss_conf             99999740463458899987767543005786873145688888777877667766434963131243146665765197
Q gi|254780479|r   81 EILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDI  160 (356)
Q Consensus        81 ~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~  160 (356)
T Consensus        81 eVL~lW~GLGYYaRARNL~kAA~~v~~~fGG~fP~d~~~~~~L~GVG~yTAgAils~a~~~~~p~~DGNV~RVLsR~fA~  160 (297)
T TIGR01084        81 EVLKLWEGLGYYARARNLHKAAQEVVEEFGGEFPQDLEDLKALPGVGRYTAGAILSFAYNKPVPILDGNVKRVLSRLFAV  160 (297)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             79998625786788899999999999871881772379785178976217999999872687620154078899999862


Q ss_pred             CCCC--CHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             5457--3568999874102578-522678999999998632041235643110000013431011001234432222221
Q gi|254780479|r  161 IKPA--PLYHKTIKNYARKITS-TSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPM  237 (356)
Q Consensus       161 ~~~~--~~~~k~l~~~~~~~~~-~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~  237 (356)
T Consensus       161 ~~~~~~k~~e~~l~~~~~~llpe~~~~~~~nqalmDlGA~iC~rk~P~C~~CPl~~~C~A~~~~~~~~yP~kk~~~~~~~  240 (297)
T TIGR01084       161 EGWPGKKKVENRLWELAESLLPEKADPEAFNQALMDLGALICTRKKPKCDLCPLQDFCLAYKQGTPEEYPVKKKKKAPPE  240 (297)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCHHH
T ss_conf             48988734889999999985886568658888998623610378478545487066555654277111678773100012


Q ss_pred             EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             12320003413760577645720132047442111134672158
Q gi|254780479|r  238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGN  281 (356)
Q Consensus       238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~  281 (356)
T Consensus       241 ~~~~~l~l~~~d~~~~~~~r~~~~l~gGLy~fP~~~~~kG~~~~  284 (297)
T TIGR01084       241 RTTYFLVLLNEDGEVLLEQRPEKGLWGGLYCFPQFELEKGIKEE  284 (297)
T ss_pred             HHEEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             01012234414870576663766410010036525532013578