HHsearch alignment for GI: 254780479 and conserved domain: cd00056
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases.
Probab=100.00 E-value=6.7e-34 Score=259.28 Aligned_cols=154 Identities=33% Similarity=0.482 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHCCHHHCCHHHHHHHHHC-CCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC---CC
Q ss_conf 46766446731161203326589987748-997898729989999997404634588999877675430057868---73
Q gi|254780479|r 40 YKVWISEIMLQQTTVKTVEPYFKKFMQKW-PTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNF---PH 115 (356)
Q Consensus 40 y~v~vseimlqqT~v~~v~~~~~~~~~~~-P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~---P~ 115 (356)
T Consensus 1 f~~Li~~Il~qq~s~~~a~~~~~~l~~~~~pt~~~l~~~~~~~l~~~~~~~gy~~Ka~~i~~~a~~i~~~~~~~~~~~~~ 80 (158)
T cd00056 1 FEVLVSEILSQQTTDKAVNKAYERLFERYGPTPEALAAADEEELRELIRSLGYRRKAKYLKELARAIVEGFGGLVLDDPD 80 (158)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999981452999999999999854998999980999999999733568999999999888889860895789888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 14568888877787766776643496313124314666576519754573568999874102578522678999999998
Q gi|254780479|r 116 KVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLG 195 (356)
Q Consensus 116 ~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlG 195 (356)
T Consensus 81 ~~~~L~~l~GIG~~TA~~vl~~~~~~~~~~vD~~v~R~~~rl~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~L~~~g 158 (158)
T cd00056 81 AREELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLKRLGLIPKK--KTPEELEELLEELLPKPYWGEANQALMDLG 158 (158)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 999987589828999999999987998362259999999995787789--999999999998589201999999998676