HHsearch alignment for GI: 254780479 and conserved domain: cd04511

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.05  E-value=2.5e-05  Score=57.98  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEE--CCCEEEEEE--EEEEEEEEEEEEC
Q ss_conf             000341376057764572013204744211113467215888630101000021--373589983--1599999999980
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWIL--CNTITHTFT--HFTLTLFVWKTIV  317 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~--l~~ikH~fT--H~~L~i~v~~~~~  317 (356)
T Consensus        16 v~~ii~~~~kILLvrR~~~-P~~g~W~lPGG~vE~gEt~eea~~REv~EEtGl~v~~~~~~~v~~~p~~~~v~~~f~~~~   94 (130)
T cd04511          16 VGCVPEWEGKVLLCRRAIE-PRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVPHISQVYMFYRARL   94 (130)
T ss_pred             EEEEEEECCEEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCEEEEEEEEEE
T ss_conf             9999986999999940689-999958689748658989999999899874097899626999945787767999999999


Q ss_pred             CC-----CCCCCCCEEECHHHHH--HCCCCHHHHHHH
Q ss_conf             77-----6766781332278887--479987899999
Q gi|254780479|r  318 PQ-----IVIIPDSTWHDAQNLA--NAALPTVMKKAL  347 (356)
Q Consensus       318 ~~-----~~~~~~~~Wv~~~el~--~~~LPs~~kKIL  347 (356)
T Consensus        95 ~~g~~~~~~E~~e~~wf~~delP~~~lAf~s~-~~al  130 (130)
T cd04511          95 LDLDFAPGPESLEVRLFTEEEIPWDELAFPTV-RRTL  130 (130)
T ss_pred             ECCCCCCCCCEEEEEEECHHHCCHHHCCHHHH-HHHC
T ss_conf             12767999520167788788997065451655-6319