HHsearch alignment for GI: 254780479 and conserved domain: cd04511
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=98.05 E-value=2.5e-05 Score=57.98 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=64.9
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEE--CCCEEEEEE--EEEEEEEEEEEEC
Q ss_conf 000341376057764572013204744211113467215888630101000021--373589983--1599999999980
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWIL--CNTITHTFT--HFTLTLFVWKTIV 317 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~--l~~ikH~fT--H~~L~i~v~~~~~ 317 (356)
T Consensus 16 v~~ii~~~~kILLvrR~~~-P~~g~W~lPGG~vE~gEt~eea~~REv~EEtGl~v~~~~~~~v~~~p~~~~v~~~f~~~~ 94 (130)
T cd04511 16 VGCVPEWEGKVLLCRRAIE-PRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVPHISQVYMFYRARL 94 (130)
T ss_pred EEEEEEECCEEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCEEEEEEEEEE
T ss_conf 9999986999999940689-999958689748658989999999899874097899626999945787767999999999
Q ss_pred CC-----CCCCCCCEEECHHHHH--HCCCCHHHHHHH
Q ss_conf 77-----6766781332278887--479987899999
Q gi|254780479|r 318 PQ-----IVIIPDSTWHDAQNLA--NAALPTVMKKAL 347 (356)
Q Consensus 318 ~~-----~~~~~~~~Wv~~~el~--~~~LPs~~kKIL 347 (356)
T Consensus 95 ~~g~~~~~~E~~e~~wf~~delP~~~lAf~s~-~~al 130 (130)
T cd04511 95 LDLDFAPGPESLEVRLFTEEEIPWDELAFPTV-RRTL 130 (130)
T ss_pred ECCCCCCCCCEEEEEEECHHHCCHHHCCHHHH-HHHC
T ss_conf 12767999520167788788997065451655-6319