HHsearch alignment for GI: 254780479 and conserved domain: cd04670
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.82 E-value=0.0001 Score=53.78 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=61.0
Q ss_pred EEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC-----CEEEEEEE-E-EEEEE
Q ss_conf 23200034137605776457201320474421111346721588863010100002137-----35899831-5-99999
Q gi|254780479|r 239 TGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN-----TITHTFTH-F-TLTLF 311 (356)
Q Consensus 239 ~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~-----~ikH~fTH-~-~L~i~ 311 (356)
T Consensus 3 igv~avi~n~~~~vLlv~~~~~--~~g~W~lPgG~ve~GEt~~eaa~REv~EEtGl~v~~~~~l~~~~~~~~~~~~~~~~ 80 (127)
T cd04670 3 VGVGGLVLNEKNEVLVVQERNK--TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLY 80 (127)
T ss_pred EEEEEEEEECCCEEEEEEECCC--CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCCEEEE
T ss_conf 7899999979999999997789--99958998203159979999999999998794568975898996079888971799
Q ss_pred E-EEEEC-C-----CCCCCCCCEEECHHHHHHCCCCHHHHHHH
Q ss_conf 9-99980-7-----76766781332278887479987899999
Q gi|254780479|r 312 V-WKTIV-P-----QIVIIPDSTWHDAQNLANAALPTVMKKAL 347 (356)
Q Consensus 312 v-~~~~~-~-----~~~~~~~~~Wv~~~el~~~~LPs~~kKIL 347 (356)
T Consensus 81 f~~~~~~~~~~i~~~~~Ei~e~~W~~~~El~~~p~~~~~~r~~ 123 (127)
T cd04670 81 FICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSEVNRLI 123 (127)
T ss_pred EEEEEECCCCCCCCCCCCEEEEEEECHHHHHCCCCCHHHHHHH
T ss_conf 9999981888778898505787883699987088704666656