HHsearch alignment for GI: 254780479 and conserved domain: cd04688
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.51 E-value=0.0011 Score=46.51 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=55.6
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCC------CCCCEECCCEEEEEEE----EEEEEE
Q ss_conf 000341376057764572013204744211113467215888630101------0000213735899831----599999
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPF------TANWILCNTITHTFTH----FTLTLF 311 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~------~~~~~~l~~ikH~fTH----~~L~i~ 311 (356)
T Consensus 5 ~aii~-~~~~vLl~~~~~~----~~w~lPGG~ve~gEt~~eA~~RE~~EEtGl~v~~~~l~~v~e~~f~~~~~~~h~i~~ 79 (126)
T cd04688 5 AAIII-HNGKLLVQKNPDE----TFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF 79 (126)
T ss_pred EEEEE-ECCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCEEEEE
T ss_conf 99999-8999999997799----989998534369989999998888887596788246999997688729975479999
Q ss_pred EEEEECCCCC-------------CCCCCEEECHHHHHHCCC-CH
Q ss_conf 9999807767-------------667813322788874799-87
Q gi|254780479|r 312 VWKTIVPQIV-------------IIPDSTWHDAQNLANAAL-PT 341 (356)
Q Consensus 312 v~~~~~~~~~-------------~~~~~~Wv~~~el~~~~L-Ps 341 (356)
T Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~Wv~ldeL~~l~l~P~ 123 (126)
T cd04688 80 YYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE 123 (126)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCC
T ss_conf 99999978855778764327798799999847999276887970