HHsearch alignment for GI: 254780479 and conserved domain: cd04689

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=97.51  E-value=0.002  Score=44.69  Aligned_cols=103  Identities=10%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHH------CCCCCCCCEECCCEEEEEEEE----EEEEE
Q ss_conf             00034137605776457201320474421111346721588863------010100002137358998315----99999
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTH------SAPFTANWILCNTITHTFTHF----TLTLF  311 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~------~~~~~~~~~~l~~ikH~fTH~----~L~i~  311 (356)
T Consensus         4 a~aii~~~~~vLl~~~~~~~----~~~lPGG~ve~gE~~~~a~~RE~~EE~G~~v~~~~~l~~~e~~~~~~~~~~H~i~~   79 (125)
T cd04689           4 ARAIVRAGNKVLLARVIGQP----HYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINH   79 (125)
T ss_pred             EEEEEEECCEEEEEEECCCC----CEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEEEECCCCCEEEEEE
T ss_conf             99999989999999988999----58999798569989999999999998799789465999997467759965189999


Q ss_pred             EEEEECCC------CC---CCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             99998077------67---66781332278887479987899999844
Q gi|254780479|r  312 VWKTIVPQ------IV---IIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       312 v~~~~~~~------~~---~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
T Consensus        80 ~f~~~~~~~~~~~~~~~d~d~~~~~WvpL~eL~l--yP~~l~d~i~~~  125 (125)
T cd04689          80 IFAVESSWLASDGPPQADEDHLSFSWVPVSDLSL--YPALLRDLVKGL  125 (125)
T ss_pred             EEEEECCCCCCCCCCCCCCCEEEEEEECHHHHHH--CCHHHHHHHHCC
T ss_conf             9999525545568988888667899971899534--877588885349