HHsearch alignment for GI: 254780479 and conserved domain: cd04695
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.75 E-value=0.00033 Score=50.13 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=65.1
Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEE------CCCEEEEEEEEE--E-EEE
Q ss_conf 2000341376057764572013204744211113467215888630101000021------373589983159--9-999
Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWIL------CNTITHTFTHFT--L-TLF 311 (356)
Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~------l~~ikH~fTH~~--L-~i~ 311 (356)
T Consensus 5 v~~~~~~~~~~~LlLkR~~--~~~g~W~~p~G~iE~gEs~~eaA~REl~EETGl~~~~l~~~~~~~~~y~~~~~~i~~~~ 82 (131)
T cd04695 5 VLLRSLDKETKVLLLKRVK--TLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAP 82 (131)
T ss_pred EEEEEECCCCEEEEEECCC--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEE
T ss_conf 9999989988899997689--99995869823346999999999998889778774347712426889984897699999
Q ss_pred EEEEECCC------CCCCCCCEEECHHHHHHCC-CCHHHHHHHHHC
Q ss_conf 99998077------6766781332278887479-987899999844
Q gi|254780479|r 312 VWKTIVPQ------IVIIPDSTWHDAQNLANAA-LPTVMKKALSAG 350 (356)
Q Consensus 312 v~~~~~~~------~~~~~~~~Wv~~~el~~~~-LPs~~kKIL~al 350 (356)
T Consensus 83 ~f~~~~~~~~~v~ls~Eh~~y~W~~~eea~~ll~~~~-~r~~l~~~ 127 (131)
T cd04695 83 VFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPG-QRALYDHV 127 (131)
T ss_pred EEEEEECCCCCCCCCCCCCCCEECCHHHHHHHCCCCC-HHHHHHHH
T ss_conf 9999938999782562032089718999996769967-89999999