HHsearch results for GI: 254780479 and protein with PDBid: 1kea_A
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.96.1.2
Probab=100.00 E-value=0 Score=472.60 Aligned_cols=213 Identities=31% Similarity=0.594 Sum_probs=203.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHH
Q ss_conf 67168999999999996289988754855444567870467664467311612033265899877489978987299899
Q gi|254780479|r 2 PQPEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEE 81 (356)
Q Consensus 2 ~~~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~ 81 (356)
.++.+.|++.||+||+.|+|+||||++ +|||.|||||||+|||++++|.++|.+|+++|||+++||+|+++|
T Consensus 6 ~~~~~~~~~~ll~wy~~~~r~lpWr~~--------~dp~~vlv~~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~a~~~e 77 (221)
T 1kea_A 6 NKKRKVFVSTILTFWNTDRRDFPWRHT--------RDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSE 77 (221)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCGGGGC--------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCHHH
T ss_conf 778999999999999966999999989--------987999999999821959999999999999788999998299999
Q ss_pred HHHHHHCCCHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCC
Q ss_conf 99997404634-58899987767543005786873145688888777877667766434963131243146665765197
Q gi|254780479|r 82 ILSAWAGLGYY-TRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDI 160 (356)
Q Consensus 82 vl~~w~gLGyy-~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~ 160 (356)
|..+|.|+||| +||++|+++|++|+++|+|.+|.+.++|++|||||+|||++|++++||++.++||+||.||++|++++
T Consensus 78 l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~vp~~~~eL~~LPGVG~ktA~~vl~~a~~~~~~~VD~~v~Rv~~R~~~~ 157 (221)
T 1kea_A 78 IAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGG 157 (221)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCC
T ss_conf 99999987899999999999999998860587301288874489876567999999853887401044999999998067
Q ss_pred CCC-CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 545-73568999874102578522678999999998632041235643110000013431011
Q gi|254780479|r 161 IKP-APLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGK 222 (356)
Q Consensus 161 ~~~-~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~ 222 (356)
... .....+.++.+++.++|.+++++|||+|||||+.||+|++|+|+.|||++.|.+|+++.
T Consensus 158 ~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~y~k~~ 220 (221)
T 1kea_A 158 SYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKCS 220 (221)
T ss_dssp GGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 889942679999999986288032999999999996887038899998898801084727779