HHsearch results for GI: 254780479 and protein with PDBid: 1mpg_A
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A*
Probab=99.14 E-value=3.9e-10 Score=90.36 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH-------------CCCHHHHHCCCHHHHHHHHHCCCH-HHHHHHHHH
Q ss_conf 678704676644673116120332658998774-------------899789872998999999740463-458899987
Q gi|254780479|r 35 SLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQK-------------WPTIFCLSSAKDEEILSAWAGLGY-YTRARNLKK 100 (356)
Q Consensus 35 ~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~-------------~P~~~~la~a~~~~vl~~w~gLGy-y~Rar~l~~ 100 (356)
..-|||..+|.-|.-||..|+.....+.++.++ |||++.+|+++++++ ..+|. .+||+.|+.
T Consensus 109 ~~~d~fE~lvraIlgQQvS~~aA~~i~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~Gls~~ka~~i~~ 184 (282)
T 1mpg_A 109 GCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIH 184 (282)
T ss_dssp CCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH----HHCCCCCHHHHHHHH
T ss_conf 9999999999999827451999999999999986887776765457777999974999999----654886047999999
Q ss_pred HHHHHHHCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EC-CCCHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 767543005-786----87314568888877787766776643496313-12-431466657651975457356899987
Q gi|254780479|r 101 CADIIVKKY-EGN----FPHKVEILKKLPGIGDYTASAIVAIAFNHFAV-VV-DTNIERIISRYFDIIKPAPLYHKTIKN 173 (356)
Q Consensus 101 ~a~~i~~~~-~g~----~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~-~v-D~Nv~RVl~R~~~~~~~~~~~~k~l~~ 173 (356)
.|+.+.+.- +-. ..+-.+.|++|||||+.||..|+-++++.+.. ++ |-.++|.+.++ ..+.+..
T Consensus 185 lA~~~~~g~l~~~~~~~~ee~~~~L~~l~GIGpWTA~~vll~~lg~~D~fp~~Dl~l~~~~~~l---------~~~~~~~ 255 (282)
T 1mpg_A 185 LANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGM---------TPAQIRR 255 (282)
T ss_dssp HHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTTC---------CHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC---------CHHHHHH
T ss_conf 9999974984213436889999999976798869999999997699883874349999874108---------9999999
Q ss_pred HHHCCCCC
Q ss_conf 41025785
Q gi|254780479|r 174 YARKITST 181 (356)
Q Consensus 174 ~~~~~~~~ 181 (356)
+++.+-|-
T Consensus 256 ~ae~w~P~ 263 (282)
T 1mpg_A 256 YAERWKPW 263 (282)
T ss_dssp HHGGGTTC
T ss_pred HHHHCCCH
T ss_conf 99855699