HHsearch results for GI: 254780479 and protein with PDBid: 1ngn_A

>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A
Probab=99.95  E-value=3.3e-28  Score=217.70  Aligned_cols=131  Identities=21%  Similarity=0.334  Sum_probs=115.4

Q ss_pred             CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHH-HHHHHHH
Q ss_conf             887548554-44567870467664467311612033265899877489978987299899999974046345-8899987
Q gi|254780479|r   23 LPWRTSPKT-EKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYT-RARNLKK  100 (356)
Q Consensus        23 lpwr~~~~~-~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~-Rar~l~~  100 (356)
                      .|++..-.. .+...+|||+++||+||+|||+.++|.++|.+|+++|||+++||+|+++|+..+|.++|||+ ||++|++
T Consensus        14 ~pp~~~~~l~~E~~~~dpf~~LVa~ILsqqT~~~~v~~v~~~l~~~~pt~~~la~a~~~el~~~i~~lG~~~~KAk~I~~   93 (155)
T 1ngn_A           14 TPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIK   93 (155)
T ss_dssp             CCCCCTTCCTHHHHTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99998631157760498389999999987096999999999999988899999873499999997200268799999999


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHCC
Q ss_conf             76754300578687314568888877787766776643496--3131243146665765197
Q gi|254780479|r  101 CADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH--FAVVVDTNIERIISRYFDI  160 (356)
Q Consensus       101 ~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~--~~~~vD~Nv~RVl~R~~~~  160 (356)
                      +|+.+       +|++.++|++|||||+|||+|+++||||+  ++.++|.|++|.+.+++..
T Consensus        94 ~a~~~-------vp~~~~~l~~LpGVG~ytad~~~if~~~~~~~v~~~D~~lr~~~~w~~~~  148 (155)
T 1ngn_A           94 FSDEY-------LTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWEN  148 (155)
T ss_dssp             HHHHH-------HHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             97166-------54423316758982199999999998799888888758999999999806