HHsearch results for GI: 254780479 and protein with PDBid: 1ngn_A
>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A
Probab=99.95 E-value=3.3e-28 Score=217.70 Aligned_cols=131 Identities=21% Similarity=0.334 Sum_probs=115.4
Q ss_pred CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHH-HHHHHHH
Q ss_conf 887548554-44567870467664467311612033265899877489978987299899999974046345-8899987
Q gi|254780479|r 23 LPWRTSPKT-EKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYT-RARNLKK 100 (356)
Q Consensus 23 lpwr~~~~~-~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~-Rar~l~~ 100 (356)
.|++..-.. .+...+|||+++||+||+|||+.++|.++|.+|+++|||+++||+|+++|+..+|.++|||+ ||++|++
T Consensus 14 ~pp~~~~~l~~E~~~~dpf~~LVa~ILsqqT~~~~v~~v~~~l~~~~pt~~~la~a~~~el~~~i~~lG~~~~KAk~I~~ 93 (155)
T 1ngn_A 14 TPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIK 93 (155)
T ss_dssp CCCCCTTCCTHHHHTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99998631157760498389999999987096999999999999988899999873499999997200268799999999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHCC
Q ss_conf 76754300578687314568888877787766776643496--3131243146665765197
Q gi|254780479|r 101 CADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH--FAVVVDTNIERIISRYFDI 160 (356)
Q Consensus 101 ~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~--~~~~vD~Nv~RVl~R~~~~ 160 (356)
+|+.+ +|++.++|++|||||+|||+|+++||||+ ++.++|.|++|.+.+++..
T Consensus 94 ~a~~~-------vp~~~~~l~~LpGVG~ytad~~~if~~~~~~~v~~~D~~lr~~~~w~~~~ 148 (155)
T 1ngn_A 94 FSDEY-------LTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWEN 148 (155)
T ss_dssp HHHHH-------HHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 97166-------54423316758982199999999998799888888758999999999806