HHsearch results for GI: 254780479 and protein with PDBid: 1orn_A
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=0 Score=445.94 Aligned_cols=207 Identities=25% Similarity=0.395 Sum_probs=192.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHH
Q ss_conf 16899999999999628998875485544456787046766446731161203326589987748997898729989999
Q gi|254780479|r 4 PEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEIL 83 (356)
Q Consensus 4 ~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl 83 (356)
+...+.+.|.+||..++++|||| |||.|||||||+|||++++|.++|++|+++|||+++||+|+++|+.
T Consensus 9 ~~~~i~~~L~~~y~~~~~~l~~r-----------dP~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p~~~~la~a~~~el~ 77 (226)
T 1orn_A 9 QIRYCLDEMAKMFPDAHCELVHR-----------NPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELE 77 (226)
T ss_dssp HHHHHHHHHHHHCTTCCCCSCCS-----------SHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCC-----------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
T ss_conf 99999999998779999999989-----------9799999999984085999999999998713999998638998998
Q ss_pred HHHHCCCHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCC
Q ss_conf 9974046345-889998776754300578687314568888877787766776643496313124314666576519754
Q gi|254780479|r 84 SAWAGLGYYT-RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK 162 (356)
Q Consensus 84 ~~w~gLGyy~-Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~ 162 (356)
..|.|+|||+ ||+||+++|++|+++|+|.+|.+.++|++|||||+|||+||++|+||+|+++|||||.||++|++.++.
T Consensus 78 ~~i~~~g~y~~ka~~i~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~kTA~~il~~a~~~p~~~VDtnv~RV~~Rlg~~~~ 157 (226)
T 1orn_A 78 QDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRW 157 (226)
T ss_dssp HHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 98874221999999999999999999299798789999748775367999999998168867788555689988286665
Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 5735689998741025785226789999999986320412356431100000134310110
Q gi|254780479|r 163 PAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKS 223 (356)
Q Consensus 163 ~~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~ 223 (356)
+.. .+.++..++.++|.+++++|||+|||||+.||+|++|+|+.|||++.|.+++++..
T Consensus 158 ~~~--~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~CPl~~~C~~~~~~~~ 216 (226)
T 1orn_A 158 DDS--VLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMR 216 (226)
T ss_dssp TCC--HHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHHHT
T ss_pred CCC--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHCCCC
T ss_conf 540--36789999983865330599999999999884589999998988221678771564