HHsearch results for GI: 254780479 and protein with PDBid: 1pu6_A
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00 E-value=8.4e-36 Score=271.16 Aligned_cols=171 Identities=15% Similarity=0.199 Sum_probs=144.2
Q ss_pred CCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH-------CCCHHHHHCCCHHHHHHHHHCCC
Q ss_conf 89988--7548554445678704676644673116120332658998774-------89978987299899999974046
Q gi|254780479|r 20 HRVLP--WRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQK-------WPTIFCLSSAKDEEILSAWAGLG 90 (356)
Q Consensus 20 ~R~lp--wr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~-------~P~~~~la~a~~~~vl~~w~gLG 90 (356)
.|..| |+.+ ++||.+|||+||+|||++.+|...+.+..++ |||+++||+|+++++.++|.++|
T Consensus 17 ~~~~p~~W~p~--------~~pfe~lv~~IL~Qqt~~~~v~~a~~~L~~~~~~~~~~~~t~~~la~a~~~eL~~~ir~~G 88 (218)
T 1pu6_A 17 LKNAPAWWWPN--------ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG 88 (218)
T ss_dssp TTTSCTTSSTT--------TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGS
T ss_pred HHCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHCC
T ss_conf 82899999999--------9879999999994669899999999999998752012489999997799999999999879
Q ss_pred HHH-HHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCC
Q ss_conf 345-889998776754300578----687314568888877787766776643496313124314666576519754573
Q gi|254780479|r 91 YYT-RARNLKKCADIIVKKYEG----NFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAP 165 (356)
Q Consensus 91 yy~-Rar~l~~~a~~i~~~~~g----~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~ 165 (356)
||+ ||++|+++|+.|+++|++ ..|.+.++|++|||||+|||++|+++||++++++||+||.||++|++....+..
T Consensus 89 ~~~~Ka~~l~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~~~vD~~v~Rv~~Rlg~~~~~~~ 168 (218)
T 1pu6_A 89 FYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYD 168 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCCCSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH
T ss_conf 95899999999999999866310379946799999848996699999999998799806204259999999089889999
Q ss_pred HHHHHHHHHHHCCCCC----------------CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 5689998741025785----------------226789999999986320412
Q gi|254780479|r 166 LYHKTIKNYARKITST----------------SRPGDFVQAMMDLGALICTSN 202 (356)
Q Consensus 166 ~~~k~l~~~~~~~~~~----------------~~~~~~nQAlMdlGa~iC~p~ 202 (356)
.++.+.+..+|. ....+|+..||+||..+|++|
T Consensus 169 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~efH~~iv~~Gk~~C~ak 217 (218)
T 1pu6_A 169 ----ELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELK 217 (218)
T ss_dssp ----HHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ----9999999886898999887750002089999999999999869877898