HHsearch results for GI: 254780479 and protein with PDBid: 1vk6_A
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=97.61 E-value=0.0002 Score=50.08 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=62.8
Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC------CEEEEEEEEEEEEEEEE
Q ss_conf 200034137605776457201320474421111346721588863010100002137------35899831599999999
Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN------TITHTFTHFTLTLFVWK 314 (356)
Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~------~ikH~fTH~~L~i~v~~ 314 (356)
.+.+++.+++++||.++... -+|+|.||++..+.++........+..++...... +....|.|. -+..|.
T Consensus 142 ~vivli~~~~~iLL~R~~~~--~~g~WslPgGfVE~GEt~eeAa~REv~EEtGl~v~~~~~~~s~~~~~~~~--l~~~F~ 217 (269)
T 1vk6_A 142 CIIVAIRRDDSILLAQHTRH--RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQS--LMTAFM 217 (269)
T ss_dssp EEEEEEEETTEEEEEEETTT--CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEE--EEEEEE
T ss_pred EEEEEEEECCEEEEEEECCC--CCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCE--EEEEEE
T ss_conf 59999983998999973368--99857601665438998999988987652234998667999953798887--999999
Q ss_pred EECC------CCCCCCCCEEECHHHHHHCCCCH-HHHHHHH
Q ss_conf 9807------76766781332278887479987-8999998
Q gi|254780479|r 315 TIVP------QIVIIPDSTWHDAQNLANAALPT-VMKKALS 348 (356)
Q Consensus 315 ~~~~------~~~~~~~~~Wv~~~el~~~~LPs-~~kKIL~ 348 (356)
+... +..+..+.+|++.+++..+|.+. ..+++|+
T Consensus 218 a~~~~gei~~d~~Ei~ea~WFs~deLp~LP~~~sIAr~LI~ 258 (269)
T 1vk6_A 218 AEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIE 258 (269)
T ss_dssp EEEEECCCCCCTTTEEEEEEEETTSCCSCCCTTSHHHHHHH
T ss_pred EEECCCCCCCCCCCEEEEEEECHHHCCCCCCCCCHHHHHHH
T ss_conf 99878954699324527889878983107996129999999