HHsearch results for GI: 254780479 and protein with PDBid: 3n5n_X
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=0 Score=639.78 Aligned_cols=268 Identities=37% Similarity=0.625 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHH
Q ss_conf 68999999999996289988754855444567870467664467311612033265899877489978987299899999
Q gi|254780479|r 5 EHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILS 84 (356)
Q Consensus 5 ~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~ 84 (356)
...|+++||+||+.|+|+||||++.+..+...+|||+|||||||||||||+||++||++||++|||+++||+|++|||++
T Consensus 15 ~~~~~~~Ll~Wy~~~~R~lPWR~~~~~~~~~~~~py~vlvseimlqQT~~~~V~~~~~~~~~r~Pt~~~LA~A~~~ev~~ 94 (287)
T 3n5n_X 15 VTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQ 94 (287)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
T ss_conf 99999999999996699899885887656667887899999999811869999999999999877999997679999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC
Q ss_conf 97404634588999877675430057868731456888-88777877667766434963131243146665765197545
Q gi|254780479|r 85 AWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKK-LPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP 163 (356)
Q Consensus 85 ~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~-LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~ 163 (356)
+|+|||||+||+||+++|++|+++|+|.+|.+..+++. |||||+|||+||+|||||++.++|||||.||++|++++..+
T Consensus 95 ~~~glGyy~ra~~l~~~a~~i~~~~~g~~p~~~~e~l~~LPGVG~kTA~aIl~~af~~~~~~VDtnV~RV~~Rl~~~~~~ 174 (287)
T 3n5n_X 95 LWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGAD 174 (287)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEECCCCCC
T ss_conf 99856389999999999988889847988762154404688756899999999883040001148700135565222676
Q ss_pred C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 7--35689998741025785226789999999986320412356431100000134310110012344322222211232
Q gi|254780479|r 164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA 241 (356)
Q Consensus 164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~ 241 (356)
. ...++.+|.+++.++|..++++|||||||||++||+|++|+|+.|||++.|.||+++.++.+|+++++++++...
T Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~n~alm~lG~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~~k~~~~~~-- 252 (287)
T 3n5n_X 175 PSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGSPDVE-- 252 (287)
T ss_dssp TTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHHHHHHHTTCC-----CC--
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCEEE--
T ss_conf 554402566776654048744431999999998788607799988889761148556529875445776577887689--
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCC
Q ss_conf 000341376057764572013204744211113
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAW 274 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~ 274 (356)
..++++.++++++.+|+++|+|+|||+||+.+.
T Consensus 253 ~~~~~~~~~~~~l~k~~~~~~~~gL~~fP~~~~ 285 (287)
T 3n5n_X 253 ECAPNTGQCHLCLPPSEPWDQTLGVVNFPRKAS 285 (287)
T ss_dssp SSGGGCSSCCCSSCCSSCCCSSCCCCC------
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 999982798799987898786454110777600