HHsearch results for GI: 254780479 and protein with PDBid: 3n5n_X

>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00  E-value=0  Score=639.78  Aligned_cols=268  Identities=37%  Similarity=0.625  Sum_probs=247.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHH
Q ss_conf             68999999999996289988754855444567870467664467311612033265899877489978987299899999
Q gi|254780479|r    5 EHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILS   84 (356)
Q Consensus         5 ~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~   84 (356)
                      ...|+++||+||+.|+|+||||++.+..+...+|||+|||||||||||||+||++||++||++|||+++||+|++|||++
T Consensus        15 ~~~~~~~Ll~Wy~~~~R~lPWR~~~~~~~~~~~~py~vlvseimlqQT~~~~V~~~~~~~~~r~Pt~~~LA~A~~~ev~~   94 (287)
T 3n5n_X           15 VTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQ   94 (287)
T ss_dssp             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
T ss_conf             99999999999996699899885887656667887899999999811869999999999999877999997679999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC
Q ss_conf             97404634588999877675430057868731456888-88777877667766434963131243146665765197545
Q gi|254780479|r   85 AWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKK-LPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP  163 (356)
Q Consensus        85 ~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~-LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~  163 (356)
                      +|+|||||+||+||+++|++|+++|+|.+|.+..+++. |||||+|||+||+|||||++.++|||||.||++|++++..+
T Consensus        95 ~~~glGyy~ra~~l~~~a~~i~~~~~g~~p~~~~e~l~~LPGVG~kTA~aIl~~af~~~~~~VDtnV~RV~~Rl~~~~~~  174 (287)
T 3n5n_X           95 LWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGAD  174 (287)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEECCCCCC
T ss_conf             99856389999999999988889847988762154404688756899999999883040001148700135565222676


Q ss_pred             C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             7--35689998741025785226789999999986320412356431100000134310110012344322222211232
Q gi|254780479|r  164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA  241 (356)
Q Consensus       164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~  241 (356)
                      .  ...++.+|.+++.++|..++++|||||||||++||+|++|+|+.|||++.|.||+++.++.+|+++++++++...  
T Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~~~~~n~alm~lG~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~~k~~~~~~--  252 (287)
T 3n5n_X          175 PSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGSPDVE--  252 (287)
T ss_dssp             TTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHHHHHHHTTCC-----CC--
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCEEE--
T ss_conf             554402566776654048744431999999998788607799988889761148556529875445776577887689--


Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCC
Q ss_conf             000341376057764572013204744211113
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAW  274 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~  274 (356)
                      ..++++.++++++.+|+++|+|+|||+||+.+.
T Consensus       253 ~~~~~~~~~~~~l~k~~~~~~~~gL~~fP~~~~  285 (287)
T 3n5n_X          253 ECAPNTGQCHLCLPPSEPWDQTLGVVNFPRKAS  285 (287)
T ss_dssp             SSGGGCSSCCCSSCCSSCCCSSCCCCC------
T ss_pred             EEEEECCCCEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             999982798799987898786454110777600