Query gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 356 No_of_seqs 257 out of 2961 Neff 6.9 Searched_HMMs 23785 Date Mon May 30 12:34:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780479.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3fsp_A A/G-specific adenine gl 100.0 0 0 757.8 28.9 339 4-350 12-358 (369) 2 3n5n_X A/G-specific adenine DN 100.0 0 0 639.8 13.7 268 5-274 15-285 (287) 3 1kg2_A A/G-specific adenine gl 100.0 0 0 481.6 18.2 221 4-232 2-225 (225) 4 1kea_A Possible G-T mismatches 100.0 0 0 472.6 16.7 213 2-222 6-220 (221) 5 1orn_A Endonuclease III; DNA r 100.0 0 0 445.9 16.7 207 4-223 9-216 (226) 6 2abk_A Endonuclease III; DNA-r 100.0 0 0 409.5 15.5 202 8-220 6-208 (211) 7 1pu6_A 3-methyladenine DNA gly 100.0 8.4E-36 3.5E-40 271.2 9.6 171 20-202 17-217 (218) 8 1ngn_A Methyl-CPG binding prot 99.9 3.3E-28 1.4E-32 217.7 7.5 131 23-160 14-148 (155) 9 3fhf_A Mjogg, N-glycosylase/DN 99.9 2.6E-28 1.1E-32 218.4 5.3 169 8-194 25-202 (214) 10 1x51_A A/G-specific adenine DN 99.9 4.2E-22 1.8E-26 174.7 10.1 131 222-352 3-148 (155) 11 3fhg_A Mjogg, N-glycosylase/DN 99.8 1.6E-21 6.9E-26 170.5 4.2 173 7-194 10-195 (207) 12 1m3q_A 8-oxoguanine DNA glycos 99.7 1.8E-17 7.6E-22 142.0 7.2 124 37-163 127-276 (317) 13 3i0w_A 8-oxoguanine-DNA-glycos 99.6 8.4E-16 3.5E-20 130.3 7.2 123 37-163 113-257 (290) 14 2jhn_A ALKA, 3-methyladenine D 99.6 6.1E-15 2.6E-19 124.2 10.8 160 37-203 116-293 (295) 15 3ees_A Probable pyrophosphohyd 99.5 4.2E-13 1.8E-17 111.2 9.8 113 241-353 24-150 (153) 16 2h56_A DNA-3-methyladenine gly 99.3 6.4E-12 2.7E-16 103.0 10.3 140 37-181 49-201 (233) 17 3hhj_A Mutator MUTT protein; n 99.3 1.8E-11 7.7E-16 99.7 8.6 127 223-350 15-153 (158) 18 1mut_A MUTT, nucleoside tripho 99.1 1.8E-11 7.5E-16 99.8 4.0 111 240-350 6-126 (129) 19 1mpg_A ALKA, 3-methyladenine D 99.1 3.9E-10 1.6E-14 90.4 10.4 134 35-181 109-263 (282) 20 3gwy_A Putative CTP pyrophosph 99.1 4.2E-10 1.8E-14 90.2 8.1 108 244-351 11-130 (140) 21 3grn_A MUTT related protein; s 98.8 5.2E-08 2.2E-12 75.4 9.9 115 236-350 6-133 (153) 22 3oga_A Nucleoside triphosphata 98.7 1.1E-07 4.7E-12 73.0 9.7 111 242-352 31-164 (165) 23 3fk9_A Mutator MUTT protein; s 98.1 2.7E-05 1.1E-09 56.3 10.4 104 243-350 8-127 (188) 24 1iry_A HMTH1; nudix motif(G37- 98.1 4.5E-06 1.9E-10 61.7 5.8 106 243-349 9-126 (156) 25 2pbt_A AP4A hydrolase; nudix p 98.1 8.2E-05 3.4E-09 52.9 11.8 106 240-350 5-125 (134) 26 3exq_A Nudix family hydrolase; 98.0 2.9E-05 1.2E-09 56.1 8.2 116 235-351 7-135 (161) 27 3gg6_A Nudix motif 18, nucleos 97.9 5E-05 2.1E-09 54.4 8.7 111 237-350 19-143 (156) 28 1vcd_A NDX1; nudix protein, di 97.9 9.7E-05 4.1E-09 52.4 9.8 112 239-355 3-125 (126) 29 2kdv_A RNA pyrophosphohydrolas 97.9 3E-05 1.3E-09 55.9 7.0 113 240-356 10-164 (164) 30 2b06_A MUTT/nudix family prote 97.9 9.5E-05 4E-09 52.4 9.2 114 238-351 9-133 (155) 31 3id9_A MUTT/nudix family prote 97.9 3.7E-05 1.5E-09 55.3 6.8 108 238-349 23-147 (171) 32 2pqv_A MUTT/nudix family prote 97.7 0.0003 1.3E-08 48.9 9.0 101 244-350 24-143 (154) 33 1nqz_A COA pyrophosphatase (MU 97.7 0.00011 4.7E-09 51.9 6.8 101 239-339 35-152 (194) 34 1f3y_A Diadenosine 5',5'''-P1, 97.6 5.4E-05 2.3E-09 54.1 5.0 110 238-350 14-161 (165) 35 2fkb_A Putative nudix hydrolas 97.6 0.00046 1.9E-08 47.6 9.6 100 237-337 37-149 (180) 36 3cng_A Nudix hydrolase; struct 97.6 0.00012 4.9E-09 51.8 6.6 101 240-341 41-152 (189) 37 1vk6_A NADH pyrophosphatase; 1 97.6 0.0002 8.6E-09 50.1 7.6 104 241-348 142-258 (269) 38 2o1c_A DATP pyrophosphohydrola 97.6 0.00033 1.4E-08 48.6 8.5 107 241-350 13-145 (150) 39 2b0v_A Nudix hydrolase; struct 97.6 0.00031 1.3E-08 48.8 8.3 113 242-355 11-143 (153) 40 3dku_A Putative phosphohydrola 97.6 0.00057 2.4E-08 46.9 9.6 106 241-348 7-128 (153) 41 1k2e_A Nudix homolog; nudix/MU 97.5 0.00018 7.7E-09 50.4 6.6 100 242-348 5-130 (156) 42 3f13_A Putative nudix hydrolas 97.5 0.00019 8E-09 50.3 6.4 102 243-350 20-127 (163) 43 2azw_A MUTT/nudix family prote 97.5 0.0022 9.3E-08 42.8 11.3 110 236-349 16-142 (148) 44 2qjo_A Bifunctional NMN adenyl 97.5 0.00094 4E-08 45.4 9.4 109 239-349 204-336 (341) 45 3i9x_A MUTT/nudix family prote 97.4 0.0011 4.7E-08 44.9 9.4 98 251-348 47-166 (187) 46 1hzt_A Isopentenyl diphosphate 97.4 0.0006 2.5E-08 46.8 7.7 95 243-337 37-150 (190) 47 3h95_A Nucleoside diphosphate- 97.3 0.0016 6.5E-08 43.9 9.2 111 237-348 25-151 (199) 48 1rya_A GDP-mannose mannosyl hy 97.3 0.0022 9.1E-08 42.9 9.8 103 242-345 22-147 (160) 49 1sjy_A MUTT/nudix family prote 97.3 0.0013 5.5E-08 44.4 8.6 97 241-337 16-130 (159) 50 3eds_A MUTT/nudix family prote 97.3 0.0004 1.7E-08 48.0 5.6 105 240-349 23-147 (153) 51 3o8s_A Nudix hydrolase, ADP-ri 97.3 0.00067 2.8E-08 46.4 6.7 97 243-345 75-187 (206) 52 1q27_A Putative nudix hydrolas 97.1 0.0024 1E-07 42.5 8.0 105 243-347 39-163 (171) 53 3fcm_A Hydrolase, nudix family 97.1 0.0028 1.2E-07 42.1 8.2 108 238-349 46-183 (197) 54 2jvb_A Protein PSU1, mRNA-deca 96.9 0.0043 1.8E-07 40.8 8.0 91 244-338 10-115 (146) 55 1ktg_A Diadenosine tetraphosph 96.9 0.011 4.6E-07 37.9 9.8 100 248-350 16-131 (138) 56 2qjt_B Nicotinamide-nucleotide 96.8 0.0058 2.4E-07 39.8 8.1 107 242-349 211-343 (352) 57 3f6a_A Hydrolase, nudix family 96.6 0.0031 1.3E-07 41.8 5.6 109 238-351 5-152 (159) 58 3gz5_A MUTT/nudix family prote 96.6 0.012 5.2E-07 37.5 8.5 106 243-349 30-151 (240) 59 2a6t_A SPAC19A8.12; alpha/beta 96.6 0.004 1.7E-07 41.0 5.9 92 243-337 106-212 (271) 60 2fvv_A Diphosphoinositol polyp 96.5 0.0056 2.4E-07 39.9 6.5 102 246-350 50-165 (194) 61 1v8y_A ADP-ribose pyrophosphat 96.5 0.011 4.6E-07 37.9 7.8 96 241-337 36-144 (170) 62 2yyh_A MUTT domain, 8-OXO-DGTP 96.5 0.0078 3.3E-07 38.9 7.1 95 251-348 26-132 (139) 63 1xsa_A BIS(5'-nucleosyl)-tetra 96.2 0.0036 1.5E-07 41.3 3.9 103 244-349 23-142 (153) 64 2dho_A Isopentenyl-diphosphate 96.1 0.053 2.2E-06 33.1 9.5 39 235-274 57-96 (235) 65 2fb1_A Conserved hypothetical 96.0 0.024 1E-06 35.4 7.2 99 246-348 24-137 (226) 66 3e57_A Uncharacterized protein 95.7 0.075 3.1E-06 32.0 8.7 98 240-338 69-189 (211) 67 2w4e_A MUTT/nudix family prote 95.1 0.043 1.8E-06 33.7 6.0 90 244-337 11-117 (145) 68 3fjy_A Probable MUTT1 protein; 95.1 0.059 2.5E-06 32.8 6.7 102 245-350 33-171 (364) 69 2fml_A MUTT/nudix family prote 95.1 0.1 4.3E-06 31.1 7.8 117 213-336 22-156 (273) 70 2pny_A Isopentenyl-diphosphate 95.0 0.2 8.3E-06 29.0 9.2 40 234-274 67-107 (246) 71 2yvp_A NDX2, MUTT/nudix family 95.0 0.037 1.6E-06 34.2 5.3 90 244-337 47-154 (182) 72 1mk1_A ADPR pyrophosphatase; n 94.8 0.049 2.1E-06 33.3 5.5 94 244-337 49-158 (207) 73 2xsq_A U8 snoRNA-decapping enz 94.7 0.035 1.5E-06 34.3 4.5 88 249-341 64-179 (217) 74 1vhz_A ADP compounds hydrolase 94.6 0.1 4.3E-06 31.0 6.8 94 242-337 52-160 (198) 75 1u20_A U8 snoRNA-binding prote 94.4 0.032 1.4E-06 34.6 3.8 90 246-341 52-171 (212) 76 2edu_A Kinesin-like protein KI 92.4 0.13 5.3E-06 30.4 4.1 56 71-134 31-86 (98) 77 2ztd_A Holliday junction ATP-d 89.1 0.1 4.2E-06 31.1 1.1 42 118-160 88-131 (212) 78 2dsc_A ADP-sugar pyrophosphata 88.9 0.72 3E-05 25.1 5.4 87 250-336 77-182 (212) 79 1s5l_U Photosystem II 12 kDa e 87.8 0.26 1.1E-05 28.2 2.6 30 107-136 49-81 (134) 80 3dup_A MUTT/nudix family prote 87.5 0.75 3.2E-05 25.0 4.7 110 239-348 122-259 (300) 81 1cuk_A RUVA protein; DNA repai 87.4 0.15 6.3E-06 29.9 1.1 42 118-160 73-116 (203) 82 1ixr_A Holliday junction DNA h 86.6 0.078 3.3E-06 31.9 -0.7 60 117-179 71-132 (191) 83 3bz1_U Photosystem II 12 kDa e 86.3 0.16 6.7E-06 29.7 0.8 22 115-136 30-51 (104) 84 2edu_A Kinesin-like protein KI 86.0 0.18 7.7E-06 29.3 1.0 23 115-137 37-59 (98) 85 1jms_A Terminal deoxynucleotid 85.0 0.15 6.2E-06 29.9 0.1 107 39-160 16-129 (381) 86 2bcq_A DNA polymerase lambda; 84.3 1.3 5.4E-05 23.3 4.6 45 94-140 35-79 (335) 87 2kp7_A Crossover junction endo 83.3 0.64 2.7E-05 25.4 2.8 42 94-137 36-77 (87) 88 1g0s_A Hypothetical 23.7 kDa p 83.2 2.4 0.0001 21.4 7.6 94 244-337 63-179 (209) 89 2duy_A Competence protein come 81.5 0.27 1.1E-05 28.1 0.3 23 115-137 24-46 (75) 90 1vdd_A Recombination protein R 80.6 0.43 1.8E-05 26.7 1.0 25 113-137 3-31 (228) 91 3bz1_U Photosystem II 12 kDa e 80.5 0.39 1.6E-05 27.0 0.8 56 70-137 23-78 (104) 92 2ihm_A POL MU, DNA polymerase 80.0 1.8 7.6E-05 22.3 4.1 45 94-140 39-83 (360) 93 1z00_A DNA excision repair pro 79.6 0.29 1.2E-05 27.8 -0.1 36 114-150 47-82 (89) 94 1cuk_A RUVA protein; DNA repai 78.4 0.43 1.8E-05 26.7 0.5 52 82-137 74-127 (203) 95 2a1j_A DNA repair endonuclease 77.8 2.8 0.00012 20.9 4.5 38 60-100 16-53 (63) 96 1q33_A Pyrophosphatase, ADP-ri 76.0 4 0.00017 19.8 7.6 30 251-284 140-169 (292) 97 2a1j_B DNA excision repair pro 75.9 0.51 2.1E-05 26.2 0.3 24 114-137 60-83 (91) 98 2fmp_A DNA polymerase beta; nu 75.8 0.35 1.5E-05 27.3 -0.6 43 94-138 35-77 (335) 99 2ztd_A Holliday junction ATP-d 75.5 0.61 2.6E-05 25.6 0.6 55 83-141 90-146 (212) 100 1ixr_A Holliday junction DNA h 74.9 0.53 2.2E-05 26.0 0.2 55 83-141 74-130 (191) 101 1z00_B DNA repair endonuclease 74.5 4.3 0.00018 19.6 4.7 56 40-101 12-68 (84) 102 1x2i_A HEF helicase/nuclease; 73.8 0.42 1.8E-05 26.7 -0.6 24 115-138 43-66 (75) 103 2w9m_A Polymerase X; SAXS, DNA 71.3 0.91 3.8E-05 24.4 0.7 25 112-136 91-115 (578) 104 1kft_A UVRC, excinuclease ABC 60.6 1.6 6.8E-05 22.6 0.2 21 116-136 54-74 (78) 105 1b22_A DNA repair protein RAD5 60.5 3.5 0.00015 20.3 1.9 46 114-161 22-67 (114) 106 2q0z_X Protein Pro2281; SEC63, 60.2 8.3 0.00035 17.6 3.8 45 87-135 134-178 (339) 107 1vq8_Y 50S ribosomal protein L 57.8 1.7 7.3E-05 22.4 0.0 47 86-136 20-66 (241) 108 2i5h_A Hypothetical protein AF 57.5 1.9 7.9E-05 22.2 0.1 95 67-176 90-187 (205) 109 2va8_A SSO2462, SKI2-type heli 57.5 9.2 0.00039 17.3 4.2 19 9-27 16-36 (715) 110 2ph1_A Nucleotide-binding prot 53.9 5.8 0.00024 18.7 2.1 40 124-163 28-71 (262) 111 3cio_A ETK, tyrosine-protein k 53.1 6.2 0.00026 18.5 2.2 42 122-163 112-157 (299) 112 1viu_A ADP-ribose pyrophosphat 52.8 11 0.00046 16.8 6.7 89 248-337 58-168 (203) 113 2i1q_A DNA repair and recombin 48.3 2.6 0.00011 21.1 -0.3 43 62-106 17-60 (322) 114 3bzc_A TEX; helix-turn-helix, 47.1 12 0.00052 16.4 3.0 50 81-137 508-557 (785) 115 1d8b_A SGS1 RECQ helicase; fiv 47.0 3.7 0.00015 20.1 0.2 22 112-133 42-63 (81) 116 1exn_A 5'-exonuclease, 5'-nucl 46.7 6.5 0.00027 18.4 1.5 12 124-135 209-220 (290) 117 2rhf_A DNA helicase RECQ; HRDC 46.3 3.6 0.00015 20.2 0.1 21 112-132 41-61 (77) 118 3la6_A Tyrosine-protein kinase 45.9 9.3 0.00039 17.3 2.2 53 112-164 90-146 (286) 119 3bqs_A Uncharacterized protein 45.4 5 0.00021 19.2 0.7 57 117-175 3-59 (93) 120 2z43_A DNA repair and recombin 43.5 4 0.00017 19.8 0.0 82 66-149 31-150 (324) 121 2yxh_A MAZG-related protein; T 41.6 8.1 0.00034 17.7 1.3 28 60-87 83-110 (116) 122 2rrd_A BLM HRDC domain, HRDC d 41.1 5.1 0.00021 19.1 0.2 21 112-132 58-78 (101) 123 2zkq_m 40S ribosomal protein S 40.9 7.4 0.00031 18.0 1.0 33 106-138 13-48 (152) 124 2oze_A ORF delta'; para, walke 39.1 7.9 0.00033 17.7 1.0 39 125-163 47-88 (298) 125 1wud_A ATP-dependent DNA helic 38.1 6.1 0.00025 18.6 0.2 21 112-132 49-69 (89) 126 2p6r_A Afuhel308 helicase; pro 37.5 9.8 0.00041 17.1 1.2 12 8-19 10-21 (702) 127 2ziu_A MUS81 protein; helix-ha 36.4 5.8 0.00024 18.7 -0.1 11 19-29 4-15 (311) 128 3kjh_A CO dehydrogenase/acetyl 36.4 17 0.00073 15.4 2.3 39 124-162 9-50 (254) 129 2woj_A ATPase GET3; tail-ancho 36.0 12 0.00052 16.4 1.5 31 118-148 137-167 (354) 130 1rq6_A 30S ribosomal protein S 35.1 15 0.00063 15.8 1.8 29 94-122 5-33 (62) 131 1wcv_1 SOJ, segregation protei 33.8 21 0.00088 14.8 3.4 40 125-164 17-59 (257) 132 3gfk_B DNA-directed RNA polyme 32.8 11 0.00046 16.8 0.8 49 87-137 19-67 (79) 133 2vqe_M 30S ribosomal protein S 30.4 6.4 0.00027 18.4 -0.7 27 112-138 8-37 (126) 134 3im1_A Protein SNU246, PRE-mRN 29.7 24 0.001 14.3 3.3 43 88-135 132-174 (328) 135 2csb_A Topoisomerase V, TOP61; 28.1 15 0.00061 15.9 0.8 100 39-152 142-249 (519) 136 2kob_A Uncharacterized protein 27.9 17 0.00071 15.5 1.1 88 39-127 7-100 (108) 137 1hyq_A MIND, cell division inh 27.5 26 0.0011 14.1 2.6 37 125-161 13-53 (263) 138 3iqw_A Tail-anchored protein t 26.8 27 0.0011 14.0 2.2 38 124-161 25-65 (334) 139 1bgx_T TAQ DNA polymerase; DNA 25.6 5.1 0.00022 19.1 -1.9 30 107-137 170-210 (832) 140 1gm5_A RECG; helicase, replica 24.9 6.8 0.00029 18.2 -1.3 16 120-135 117-132 (780) 141 3mtu_E Head morphogenesis prot 24.4 10 0.00043 17.0 -0.5 29 47-80 30-59 (77) 142 2e1f_A Werner syndrome ATP-dep 24.0 13 0.00053 16.3 -0.1 22 111-132 50-71 (103) 143 2aq4_A DNA repair protein REV1 23.4 31 0.0013 13.6 4.4 41 120-160 243-285 (434) 144 3c65_A Uvrabc system protein C 22.8 15 0.00061 15.9 0.0 17 146-162 38-54 (226) 145 3fkq_A NTRC-like two-domain pr 22.5 32 0.0014 13.5 2.4 43 123-165 152-197 (373) 146 1z3e_B DNA-directed RNA polyme 22.0 14 0.0006 15.9 -0.2 48 87-136 12-59 (73) 147 2iyv_A Shikimate kinase, SK; t 21.9 22 0.00091 14.7 0.8 37 120-160 7-43 (184) 148 2nrt_A Uvrabc system protein C 21.6 34 0.0014 13.3 3.0 23 329-351 197-220 (220) 149 2w96_A G1/S-specific cyclin-D1 21.1 34 0.0014 13.3 5.6 82 50-152 74-163 (271) No 1 >3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Probab=100.00 E-value=0 Score=757.78 Aligned_cols=339 Identities=32% Similarity=0.597 Sum_probs=309.3 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHH Q ss_conf 16899999999999628998875485544456787046766446731161203326589987748997898729989999 Q gi|254780479|r 4 PEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEIL 83 (356) Q Consensus 4 ~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl 83 (356) +++.|++.||+||+.|+|+||||++ +|||+|||||||||||||++|++||++|+++|||+++||+|+++||+ T Consensus 12 ~~~~~~~~ll~wy~~~~r~lpWr~~--------~~py~vlvseil~qqT~~~~v~~~~~~~~~~~pt~~~la~a~~~ev~ 83 (369) T 3fsp_A 12 PAREFQRDLLDWFARERRDLPWRKD--------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVL 83 (369) T ss_dssp CHHHHHHHHHHHHHHHCCCCGGGSC--------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH T ss_conf 5999999999999846988998989--------98799999999861087889999999999977899999778999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC Q ss_conf 99740463458899987767543005786873145688888777877667766434963131243146665765197545 Q gi|254780479|r 84 SAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP 163 (356) Q Consensus 84 ~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~ 163 (356) ++|+|||||+||+|||++|++|+++|+|.+|.+.++|++|||||+|||+||+|||||+++++|||||.||++|++++..+ T Consensus 84 ~~~~~lGyy~ra~~l~~~a~~i~~~~~g~~P~~~~~L~~LpGVG~~TA~ail~~a~~~~~~~vD~nv~Rv~~R~~~~~~~ 163 (369) T 3fsp_A 84 KAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDD 163 (369) T ss_dssp HTTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSC T ss_pred HHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCCCC T ss_conf 99874688999999985212276004899998799985242258899999999861488612248513567543044688 Q ss_pred C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 7--35689998741025785226789999999986320412356431100000134310110012344322222211232 Q gi|254780479|r 164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA 241 (356) Q Consensus 164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~ 241 (356) . +...+.++.+++.++|..++++||||||||||+||+|++|+|..|||++.|.||+.|.++.||+|++|++++.+... T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~nqalmdlG~~iC~~~~P~C~~CPl~~~C~~~~~~~~~~~P~k~kK~~~~~~~~~ 243 (369) T 3fsp_A 164 IAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLA 243 (369) T ss_dssp TTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEE T ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCCCCHHHCCCCCCCCCCCCCCHH T ss_conf 87511467788753035876775688999999756415689998988985332776527997656788778876532046 Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHH-----HCCCCCCCCEECCCEEEEEEEEEEEEEEEEEE Q ss_conf 0003413760577645720132047442111134672158886-----30101000021373589983159999999998 Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDT-----HSAPFTANWILCNTITHTFTHFTLTLFVWKTI 316 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~-----~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~~ 316 (356) ++++++.+|++||+||+++|+|+||||||+++++..+...... ...........+++|+|+||||++++++|.+. T Consensus 244 ~~i~~~~~~~iLl~kR~~~gll~GLweFP~~~~e~~~~~~~l~r~l~ee~~i~~~~~~~l~~v~H~fSH~~l~l~vy~~~ 323 (369) T 3fsp_A 244 VAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGR 323 (369) T ss_dssp EEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSSCTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEE T ss_pred HHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCEEEEECCCEEEEEEEEEEE T ss_conf 76641217888998625544457876288566576430778998889870886011140451589658968999999999 Q ss_pred CCCCC-CCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 07767-66781332278887479987899999844 Q gi|254780479|r 317 VPQIV-IIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 317 ~~~~~-~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) +.+.. ..++++|++.+++++++||++++|||+.+ T Consensus 324 ~~~~~~~~~~~~Wv~~~el~~~~lp~~~kKIl~~~ 358 (369) T 3fsp_A 324 LVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREY 358 (369) T ss_dssp ECCSSCCCTTEEEEEGGGGGGSCCCHHHHHHHHHH T ss_pred ECCCCCCCCCCEEEEHHHHHHCCCCHHHHHHHHHH T ss_conf 67898788787884389876689998999999999 No 2 >3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Probab=100.00 E-value=0 Score=639.78 Aligned_cols=268 Identities=37% Similarity=0.625 Sum_probs=247.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHH Q ss_conf 68999999999996289988754855444567870467664467311612033265899877489978987299899999 Q gi|254780479|r 5 EHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILS 84 (356) Q Consensus 5 ~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~ 84 (356) ...|+++||+||+.|+|+||||++.+..+...+|||+|||||||||||||+||++||++||++|||+++||+|++|||++ T Consensus 15 ~~~~~~~Ll~Wy~~~~R~lPWR~~~~~~~~~~~~py~vlvseimlqQT~~~~V~~~~~~~~~r~Pt~~~LA~A~~~ev~~ 94 (287) T 3n5n_X 15 VTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQ 94 (287) T ss_dssp HHHHHHHHHHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH T ss_conf 99999999999996699899885887656667887899999999811869999999999999877999997679999999 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC Q ss_conf 97404634588999877675430057868731456888-88777877667766434963131243146665765197545 Q gi|254780479|r 85 AWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKK-LPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP 163 (356) Q Consensus 85 ~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~-LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~ 163 (356) +|+|||||+||+||+++|++|+++|+|.+|.+..+++. |||||+|||+||+|||||++.++|||||.||++|++++..+ T Consensus 95 ~~~glGyy~ra~~l~~~a~~i~~~~~g~~p~~~~e~l~~LPGVG~kTA~aIl~~af~~~~~~VDtnV~RV~~Rl~~~~~~ 174 (287) T 3n5n_X 95 LWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGAD 174 (287) T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSC T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEECCCCCC T ss_conf 99856389999999999988889847988762154404688756899999999883040001148700135565222676 Q ss_pred C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 7--35689998741025785226789999999986320412356431100000134310110012344322222211232 Q gi|254780479|r 164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA 241 (356) Q Consensus 164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~ 241 (356) . ...++.+|.+++.++|..++++|||||||||++||+|++|+|+.|||++.|.||+++.++.+|+++++++++... T Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~n~alm~lG~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~~k~~~~~~-- 252 (287) T 3n5n_X 175 PSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGSPDVE-- 252 (287) T ss_dssp TTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHHHHHHHTTCC-----CC-- T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCEEE-- T ss_conf 554402566776654048744431999999998788607799988889761148556529875445776577887689-- Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCC Q ss_conf 000341376057764572013204744211113 Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAW 274 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~ 274 (356) ..++++.++++++.+|+++|+|+|||+||+.+. T Consensus 253 ~~~~~~~~~~~~l~k~~~~~~~~gL~~fP~~~~ 285 (287) T 3n5n_X 253 ECAPNTGQCHLCLPPSEPWDQTLGVVNFPRKAS 285 (287) T ss_dssp SSGGGCSSCCCSSCCSSCCCSSCCCCC------ T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCHH T ss_conf 999982798799987898786454110777600 No 3 >1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Probab=100.00 E-value=0 Score=481.59 Aligned_cols=221 Identities=39% Similarity=0.753 Sum_probs=209.6 Q ss_pred CHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHH Q ss_conf 168999999999996289-9887548554445678704676644673116120332658998774899789872998999 Q gi|254780479|r 4 PEHIIQSKILDWYDTNHR-VLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEI 82 (356) Q Consensus 4 ~~~~~~~~ll~w~~~~~R-~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~v 82 (356) +++.|+++||+||+.++| +||||.+ +|||.|||||||+|||++++|.++|.+|+++|||+++||+|+++|| T Consensus 2 ~~~~~~~~ll~wy~~~~~~~lPWr~~--------~~p~~vlV~~iLsqqT~~~~v~~~~~~l~~~~~t~~~la~a~~~el 73 (225) T 1kg2_A 2 QASQFSAQVLDWYDKYGRKTLPWQID--------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEV 73 (225) T ss_dssp CHHHHHHHHHHHHHHHCCCCSGGGSS--------CCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCHHHH T ss_conf 86899999999999829987999999--------9869999999997328599999999999998789999972289999 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCC Q ss_conf 99974046345889998776754300578687314568888877787766776643496313124314666576519754 Q gi|254780479|r 83 LSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK 162 (356) Q Consensus 83 l~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~ 162 (356) ..+|.|+|||+||+||+++|++|+++|+|.+|.+.++|++|||||+|||++|+++|||+|.++||+||.||++|++++.. T Consensus 74 ~~~i~~~gy~~ka~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~a~~~p~~~VDt~v~Rv~~Rl~~~~~ 153 (225) T 1kg2_A 74 LHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSG 153 (225) T ss_dssp HHHHTTSCCTHHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCS T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHEEHHCCCCCC T ss_conf 99986167327799999999999987079997429999758987478999999985298616328875540000215668 Q ss_pred C--CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC Q ss_conf 5--735689998741025785226789999999986320412356431100000134310110012344322 Q gi|254780479|r 163 P--APLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIK 232 (356) Q Consensus 163 ~--~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~K 232 (356) . ....++.++.+++.++|...+++||++|||||+.||+|++|+|+.|||++.|.+|++|.++.+|+|++| T Consensus 154 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~k 225 (225) T 1kg2_A 154 WPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK 225 (225) T ss_dssp CTTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGGGSSCCCC- T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCC T ss_conf 997268999999987513860000177799999978881599999998978222978765992017889999 No 4 >1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.96.1.2 Probab=100.00 E-value=0 Score=472.60 Aligned_cols=213 Identities=31% Similarity=0.594 Sum_probs=203.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHH Q ss_conf 67168999999999996289988754855444567870467664467311612033265899877489978987299899 Q gi|254780479|r 2 PQPEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEE 81 (356) Q Consensus 2 ~~~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~ 81 (356) .++.+.|++.||+||+.|+|+||||++ +|||.|||||||+|||++++|.++|.+|+++|||+++||+|+++| T Consensus 6 ~~~~~~~~~~ll~wy~~~~r~lpWr~~--------~dp~~vlv~~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~a~~~e 77 (221) T 1kea_A 6 NKKRKVFVSTILTFWNTDRRDFPWRHT--------RDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSE 77 (221) T ss_dssp HHHHHHHHHHHHHHHHHSCCCCGGGGC--------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCHHH T ss_conf 778999999999999966999999989--------987999999999821959999999999999788999998299999 Q ss_pred HHHHHHCCCHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCC Q ss_conf 99997404634-58899987767543005786873145688888777877667766434963131243146665765197 Q gi|254780479|r 82 ILSAWAGLGYY-TRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDI 160 (356) Q Consensus 82 vl~~w~gLGyy-~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~ 160 (356) |..+|.|+||| +||++|+++|++|+++|+|.+|.+.++|++|||||+|||++|++++||++.++||+||.||++|++++ T Consensus 78 l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~vp~~~~eL~~LPGVG~ktA~~vl~~a~~~~~~~VD~~v~Rv~~R~~~~ 157 (221) T 1kea_A 78 IAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGG 157 (221) T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCG T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCC T ss_conf 99999987899999999999999998860587301288874489876567999999853887401044999999998067 Q ss_pred CCC-CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCC Q ss_conf 545-73568999874102578522678999999998632041235643110000013431011 Q gi|254780479|r 161 IKP-APLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGK 222 (356) Q Consensus 161 ~~~-~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~ 222 (356) ... .....+.++.+++.++|.+++++|||+|||||+.||+|++|+|+.|||++.|.+|+++. T Consensus 158 ~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~y~k~~ 220 (221) T 1kea_A 158 SYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKCS 220 (221) T ss_dssp GGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC- T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 889942679999999986288032999999999996887038899998898801084727779 No 5 >1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Probab=100.00 E-value=0 Score=445.94 Aligned_cols=207 Identities=25% Similarity=0.395 Sum_probs=192.6 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHH Q ss_conf 16899999999999628998875485544456787046766446731161203326589987748997898729989999 Q gi|254780479|r 4 PEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEIL 83 (356) Q Consensus 4 ~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl 83 (356) +...+.+.|.+||..++++|||| |||.|||||||+|||++++|.++|++|+++|||+++||+|+++|+. T Consensus 9 ~~~~i~~~L~~~y~~~~~~l~~r-----------dP~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p~~~~la~a~~~el~ 77 (226) T 1orn_A 9 QIRYCLDEMAKMFPDAHCELVHR-----------NPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELE 77 (226) T ss_dssp HHHHHHHHHHHHCTTCCCCSCCS-----------SHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCCCCC-----------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH T ss_conf 99999999998779999999989-----------9799999999984085999999999998713999998638998998 Q ss_pred HHHHCCCHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCC Q ss_conf 9974046345-889998776754300578687314568888877787766776643496313124314666576519754 Q gi|254780479|r 84 SAWAGLGYYT-RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK 162 (356) Q Consensus 84 ~~w~gLGyy~-Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~ 162 (356) ..|.|+|||+ ||+||+++|++|+++|+|.+|.+.++|++|||||+|||+||++|+||+|+++|||||.||++|++.++. T Consensus 78 ~~i~~~g~y~~ka~~i~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~kTA~~il~~a~~~p~~~VDtnv~RV~~Rlg~~~~ 157 (226) T 1orn_A 78 QDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRW 157 (226) T ss_dssp HHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCT T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC T ss_conf 98874221999999999999999999299798789999748775367999999998168867788555689988286665 Q ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC Q ss_conf 5735689998741025785226789999999986320412356431100000134310110 Q gi|254780479|r 163 PAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKS 223 (356) Q Consensus 163 ~~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~ 223 (356) +.. .+.++..++.++|.+++++|||+|||||+.||+|++|+|+.|||++.|.+++++.. T Consensus 158 ~~~--~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~CPl~~~C~~~~~~~~ 216 (226) T 1orn_A 158 DDS--VLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMR 216 (226) T ss_dssp TCC--HHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHHHT T ss_pred CCC--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHCCCC T ss_conf 540--36789999983865330599999999999884589999998988221678771564 No 6 >2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Probab=100.00 E-value=0 Score=409.48 Aligned_cols=202 Identities=21% Similarity=0.284 Sum_probs=184.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHH Q ss_conf 99999999996289988754855444567870467664467311612033265899877489978987299899999974 Q gi|254780479|r 8 IQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWA 87 (356) Q Consensus 8 ~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~ 87 (356) ..+-+..|++.+.+.-+|.. .+|||.|||||||+|||++++|.++|.+|+++|||+++||+|++++|..+|+ T Consensus 6 ~~ei~~~L~~~~~~~~~~l~--------~~~p~~ili~~iLsqqT~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~ 77 (211) T 2abk_A 6 RLEILTRLRENNPHPTTELN--------FSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIK 77 (211) T ss_dssp HHHHHHHHHHHCSSCCCSSC--------CSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCCCCCC--------CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHH T ss_conf 99999999997899999888--------9986999999999740868999999999998758999986279999999998 Q ss_pred CCCHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCH Q ss_conf 046345-8899987767543005786873145688888777877667766434963131243146665765197545735 Q gi|254780479|r 88 GLGYYT-RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPL 166 (356) Q Consensus 88 gLGyy~-Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~ 166 (356) |+|||+ ||++|+++|++|+++|+|.+|.+.++|++|||||+|||+||+++|||+|+++|||||.||++|++..... T Consensus 78 ~~G~y~~Ka~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~VDtnv~Rv~~R~g~~~~~--- 154 (211) T 2abk_A 78 TIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGK--- 154 (211) T ss_dssp TSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCCS--- T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC--- T ss_conf 62179999999999999999984899983299987178873699999999873588621462277899985767899--- Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHC Q ss_conf 689998741025785226789999999986320412356431100000134310 Q gi|254780479|r 167 YHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSE 220 (356) Q Consensus 167 ~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~ 220 (356) ..+.++..+..++|.+.+++|||+|||||++||++++|+|+.|||+..|.+|++ T Consensus 155 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~vC~~r~P~C~~Cpl~~~C~y~~k 208 (211) T 2abk_A 155 NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK 208 (211) T ss_dssp SHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTC T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 889999998721760127999999999700132599999999989054988677 No 7 >1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Probab=100.00 E-value=8.4e-36 Score=271.16 Aligned_cols=171 Identities=15% Similarity=0.199 Sum_probs=144.2 Q ss_pred CCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH-------CCCHHHHHCCCHHHHHHHHHCCC Q ss_conf 89988--7548554445678704676644673116120332658998774-------89978987299899999974046 Q gi|254780479|r 20 HRVLP--WRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQK-------WPTIFCLSSAKDEEILSAWAGLG 90 (356) Q Consensus 20 ~R~lp--wr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~-------~P~~~~la~a~~~~vl~~w~gLG 90 (356) .|..| |+.+ ++||.+|||+||+|||++.+|...+.+..++ |||+++||+|+++++.++|.++| T Consensus 17 ~~~~p~~W~p~--------~~pfe~lv~~IL~Qqt~~~~v~~a~~~L~~~~~~~~~~~~t~~~la~a~~~eL~~~ir~~G 88 (218) T 1pu6_A 17 LKNAPAWWWPN--------ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG 88 (218) T ss_dssp TTTSCTTSSTT--------TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGS T ss_pred HHCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHCC T ss_conf 82899999999--------9879999999994669899999999999998752012489999997799999999999879 Q ss_pred HHH-HHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCC Q ss_conf 345-889998776754300578----687314568888877787766776643496313124314666576519754573 Q gi|254780479|r 91 YYT-RARNLKKCADIIVKKYEG----NFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAP 165 (356) Q Consensus 91 yy~-Rar~l~~~a~~i~~~~~g----~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~ 165 (356) ||+ ||++|+++|+.|+++|++ ..|.+.++|++|||||+|||++|+++||++++++||+||.||++|++....+.. T Consensus 89 ~~~~Ka~~l~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~~~vD~~v~Rv~~Rlg~~~~~~~ 168 (218) T 1pu6_A 89 FYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYD 168 (218) T ss_dssp CHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCCCSHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH T ss_conf 95899999999999999866310379946799999848996699999999998799806204259999999089889999 Q ss_pred HHHHHHHHHHHCCCCC----------------CCHHHHHHHHHHHHHHHCCCC Q ss_conf 5689998741025785----------------226789999999986320412 Q gi|254780479|r 166 LYHKTIKNYARKITST----------------SRPGDFVQAMMDLGALICTSN 202 (356) Q Consensus 166 ~~~k~l~~~~~~~~~~----------------~~~~~~nQAlMdlGa~iC~p~ 202 (356) .++.+.+..+|. ....+|+..||+||..+|++| T Consensus 169 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~efH~~iv~~Gk~~C~ak 217 (218) T 1pu6_A 169 ----ELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELK 217 (218) T ss_dssp ----HHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHHTC T ss_pred ----HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf ----9999999886898999887750002089999999999999869877898 No 8 >1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A Probab=99.95 E-value=3.3e-28 Score=217.70 Aligned_cols=131 Identities=21% Similarity=0.334 Sum_probs=115.4 Q ss_pred CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHH-HHHHHHH Q ss_conf 887548554-44567870467664467311612033265899877489978987299899999974046345-8899987 Q gi|254780479|r 23 LPWRTSPKT-EKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYT-RARNLKK 100 (356) Q Consensus 23 lpwr~~~~~-~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~-Rar~l~~ 100 (356) .|++..-.. .+...+|||+++||+||+|||+.++|.++|.+|+++|||+++||+|+++|+..+|.++|||+ ||++|++ T Consensus 14 ~pp~~~~~l~~E~~~~dpf~~LVa~ILsqqT~~~~v~~v~~~l~~~~pt~~~la~a~~~el~~~i~~lG~~~~KAk~I~~ 93 (155) T 1ngn_A 14 TPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIK 93 (155) T ss_dssp CCCCCTTCCTHHHHTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99998631157760498389999999987096999999999999988899999873499999997200268799999999 Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHCC Q ss_conf 76754300578687314568888877787766776643496--3131243146665765197 Q gi|254780479|r 101 CADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH--FAVVVDTNIERIISRYFDI 160 (356) Q Consensus 101 ~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~--~~~~vD~Nv~RVl~R~~~~ 160 (356) +|+.+ +|++.++|++|||||+|||+|+++||||+ ++.++|.|++|.+.+++.. T Consensus 94 ~a~~~-------vp~~~~~l~~LpGVG~ytad~~~if~~~~~~~v~~~D~~lr~~~~w~~~~ 148 (155) T 1ngn_A 94 FSDEY-------LTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWEN 148 (155) T ss_dssp HHHHH-------HHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHH T ss_pred HHHHH-------HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 97166-------54423316758982199999999998799888888758999999999806 No 9 >3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Probab=99.94 E-value=2.6e-28 Score=218.42 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=140.9 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHH Q ss_conf 99999999996289988754855444567870467664467311612033265899877489978987299899999974 Q gi|254780479|r 8 IQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWA 87 (356) Q Consensus 8 ~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~ 87 (356) +-++++.+|.. ++|+.. .|||.++|++||.|||++..|...++++ | +.++.++++|+...+. T Consensus 25 ~i~~~~~~f~~----~~~~~~--------~~~F~~Lv~~ILsqqt~~~~~~~~~~~l----~--e~~~~~~~eel~~~ik 86 (214) T 3fhf_A 25 IIDKRIQEFKS----FKNKSN--------EEWFKELCFCILTANFTAEGGIRIQKEI----G--DGFLTLPREELEEKLK 86 (214) T ss_dssp HHHHHHHHHHG----GGGSCH--------HHHHHHHHHHHHHTTSCHHHHHHHHHHH----T--THHHHSCHHHHHHHHH T ss_pred HHHHHHHHHCC----CCCCCC--------CCHHHHHHHHHHCCCCCHHHHHHHHHHH----H--HHHHCCCHHHHHHHHH T ss_conf 99999998515----677654--------8889999999973657399999999999----9--9998699999999999 Q ss_pred CCC--HH-HHHHHHHHHHHH-----HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHC Q ss_conf 046--34-588999877675-----4300578687314568888877787766776643496313124314666576519 Q gi|254780479|r 88 GLG--YY-TRARNLKKCADI-----IVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFD 159 (356) Q Consensus 88 gLG--yy-~Rar~l~~~a~~-----i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~ 159 (356) ..| || +||++|+++|++ +.+.++|.+|.+.++|.+|||||+|||++|++++|+.+.++||+||.||+.|++. T Consensus 87 ~~G~~f~~~KAk~I~~~a~~~~~~~l~~~~~~~~~~~~~~L~~l~GIG~ktA~~~L~~~~~~~~~ivD~hv~Ri~~rlg~ 166 (214) T 3fhf_A 87 NLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRELYENNY 166 (214) T ss_dssp HTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTS T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC T ss_conf 94645679999999999999999888897399898739999748887699999999997699863132799999999388 Q ss_pred CCCC-CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 7545-7356899987410257852267899999999 Q gi|254780479|r 160 IIKP-APLYHKTIKNYARKITSTSRPGDFVQAMMDL 194 (356) Q Consensus 160 ~~~~-~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdl 194 (356) +... ...+++....+.+.+.+..+..++++++||+ T Consensus 167 ~~~~~k~~t~k~y~~~e~~l~~~~~~~~~~~~~lDl 202 (214) T 3fhf_A 167 IDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDL 202 (214) T ss_dssp SSSCCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 777776421647999999999777637999899899 No 10 >1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3 Probab=99.87 E-value=4.2e-22 Score=174.68 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=104.0 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEC---CCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHH--------CCCCC Q ss_conf 100123443222222112320003413---7605776457201320474421111346721588863--------01010 Q gi|254780479|r 222 KSHLLGINTIKKKRPMRTGAVFIAITN---DNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTH--------SAPFT 290 (356) Q Consensus 222 ~~~~~P~kk~KKkk~~r~~~~~vii~~---~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~--------~~~~~ 290 (356) ...+||+|++||+++.+...++|+.+. +|+|||+||+++|+|+||||||+++++..+....... ..... T Consensus 3 ~~~s~PvK~~kk~~~~~~~~~~iv~~~~~~~~~iLl~kRp~~gl~~GLWefP~~~~e~~e~~~~~~~~~~~~e~~~~~~~ 82 (155) T 1x51_A 3 SGSSGPRKASRKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPA 82 (155) T ss_dssp CSCSCTTSSSCSCTTEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCS T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 86668988788999789899999995578899899997799996774411636112158666677999999986355621 Q ss_pred CCCEECCCEEEEEEEEEEEEEEEEEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCC Q ss_conf 00021373589983159999999998077----676678133227888747998789999984482 Q gi|254780479|r 291 ANWILCNTITHTFTHFTLTLFVWKTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAGGI 352 (356) Q Consensus 291 ~~~~~l~~ikH~fTH~~L~i~v~~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~ 352 (356) .....++.++|+|||+++++++|.+.+.. ....++++|++.+++++++||++++|||+.+.. T Consensus 83 ~~~~~~~~~~H~ftH~~l~~~~~~~~~~~~~~~~~~~~~~~Wv~~~el~~~~lp~~~~Kil~~~~~ 148 (155) T 1x51_A 83 THLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQG 148 (155) T ss_dssp TTCEECCCBCCBCSSCEEEEEEEEEECSSCCCCCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHH T ss_conf 232102432101577438999999984068845566768799777882226999999999999985 No 11 >3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Probab=99.83 E-value=1.6e-21 Score=170.50 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=138.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHH Q ss_conf 99999999999628998875485544456787046766446731161203326589987748997898729989999997 Q gi|254780479|r 7 IIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAW 86 (356) Q Consensus 7 ~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w 86 (356) .++..++...+..+ ++.+. ...+++..+|+-|+.|||.+..+...++++.+ .++.++++++...+ T Consensus 10 k~~~~v~~ri~~~~--~~~~~-------~~~~~F~~L~~~Ilsqq~s~~~a~~~~~~l~e------~~~~~~~~~l~~~l 74 (207) T 3fhg_A 10 KVRARVLERVDEFR--LNNLS-------NEEVWFRELTLCLLTANSSFISAYQALNCLGQ------KIYYANEEEIRNIL 74 (207) T ss_dssp HHHHHHHHHHHHHH--HHHTS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHGG------GGGTCCHHHHHHHH T ss_pred HHHHHHHHHHHHCC--CCCCC-------CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH------HHHCCCHHHHHHHH T ss_conf 88999999998737--78886-------30219999999997586729999999999999------88549999999999 Q ss_pred HCCC--H-HHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHH Q ss_conf 4046--3-458899987767543005786873--------1456888887778776677664349631312431466657 Q gi|254780479|r 87 AGLG--Y-YTRARNLKKCADIIVKKYEGNFPH--------KVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIIS 155 (356) Q Consensus 87 ~gLG--y-y~Rar~l~~~a~~i~~~~~g~~P~--------~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~ 155 (356) .++| | ++||++++.+|+.+.+++++.+|. ..++|++|||||++||++++.++++.+.+++|+||.|++. T Consensus 75 k~~g~~f~~~ka~~i~~~a~~i~~~~~~~~~~l~~~~~~e~~~~L~~l~GIG~ktA~~~L~~~~~~~~~~vD~hv~Ri~~ 154 (207) T 3fhg_A 75 KSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGYFDLAIIDRHIIDFMR 154 (207) T ss_dssp HHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTCCSSCCCCHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 98376068889999999999999873784066661787999999998788729999999999768876678479999999 Q ss_pred HHHCCCCC--CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 65197545--7356899987410257852267899999999 Q gi|254780479|r 156 RYFDIIKP--APLYHKTIKNYARKITSTSRPGDFVQAMMDL 194 (356) Q Consensus 156 R~~~~~~~--~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdl 194 (356) |++.+... .+.+++..+.+.+.+.+..+..+.+|++||+ T Consensus 155 r~g~~~~~~~k~~~~k~y~~ie~~l~~~~~~~~~~~~~~dl 195 (207) T 3fhg_A 155 RIGAIGETNVKQLSKSLYISFENILKSIASNLNMSVGILDL 195 (207) T ss_dssp HTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHH T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 92885678877443889999999999876607987899999 No 12 >1m3q_A 8-oxoguanine DNA glycosylase; DNA repair, END product, HOGG, 8-aminoguanine, RE-ligation, hydrolase/DNA complex; HET: DRZ ANG; 1.90A {Homo sapiens} SCOP: a.96.1.3 d.129.1.2 PDB: 1m3h_A* 1n39_A* 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 1fn7_A* 1n3a_A* 1n3c_A* 1ebm_A* 1ko9_A 2noe_A* 2noh_A* 2nol_A* 3ktu_A* 1yqk_A 2noz_A* 2nof_A* 1yqr_A* 1yql_A* ... Probab=99.70 E-value=1.8e-17 Score=142.02 Aligned_cols=124 Identities=25% Similarity=0.372 Sum_probs=106.1 Q ss_pred CCHHHHHHHHHHHHHCCHHHCCHHHHHHHH---------------HCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 870467664467311612033265899877---------------48997898729989999997404634588999877 Q gi|254780479|r 37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQ---------------KWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKC 101 (356) Q Consensus 37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~---------------~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~ 101 (356) +|||..+|+-|+-||+.+........++.+ .||+++.||+++.|+.++. -|+|| ||++++++ T Consensus 127 qdpfE~Lv~~I~sQq~si~~a~~~~~~L~~~~G~~~~~~~~~~~~~FPtp~~L~~~~~e~~lr~-~g~g~--Ra~~i~~~ 203 (317) T 1m3q_A 127 QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRK-LGLGY--RARYVSAS 203 (317) T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHHHHH-TTCTT--HHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHH-CCCHH--HHHHHHHH T ss_conf 9879999999999883399999999999998299877878642147899999973688999986-26368--99999999 Q ss_pred HHHHHHCCCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEECCCCHHHHHHHHHCCCCC Q ss_conf 675430057868----------73145688888777877667766434963-131243146665765197545 Q gi|254780479|r 102 ADIIVKKYEGNF----------PHKVEILKKLPGIGDYTASAIVAIAFNHF-AVVVDTNIERIISRYFDIIKP 163 (356) Q Consensus 102 a~~i~~~~~g~~----------P~~~~~l~~LpGiG~yta~ai~s~a~~~~-~~~vD~Nv~RVl~R~~~~~~~ 163 (356) |+.+.+..+|.. ++-.++|++|||||++||..|+.++++.+ +.+||++|+|+++|+|+.... T Consensus 204 a~~~~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~wtAd~ilLf~lg~~dafPvD~~v~r~~~~~y~~~~~ 276 (317) T 1m3q_A 204 ARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVEVHMWHIAQRDYSWHPT 276 (317) T ss_dssp HHHHHHTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCS T ss_pred HHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCC T ss_conf 9999853444046998853557999999985489488999999998579998677529999999997133555 No 13 >3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Probab=99.61 E-value=8.4e-16 Score=130.28 Aligned_cols=123 Identities=22% Similarity=0.310 Sum_probs=105.0 Q ss_pred CCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHC--------------CCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 87046766446731161203326589987748--------------9978987299899999974046345889998776 Q gi|254780479|r 37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQKW--------------PTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCA 102 (356) Q Consensus 37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~~~--------------P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a 102 (356) +|||..+||-|+-||+.+......+.++.++| |+++.|+.++++++.. -|+|| ||++|+++| T Consensus 113 qdpfE~Lv~~I~sQq~si~~a~~~~~~L~~~~G~~~~~~~~~~~~fPtp~~l~~~~~e~lr~--~g~g~--Ra~yI~~~A 188 (290) T 3i0w_A 113 QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE--CTAGF--RAKYLKDTV 188 (290) T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH--TTCGG--GHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHH--CCHHH--HHHHHHHHH T ss_conf 98699999999984620999999999999981987787764235789999997599999986--27598--999999999 Q ss_pred HHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEECCCCHHHHHHHHHCCCCC Q ss_conf 75430057-------86873145688888777877667766434963-131243146665765197545 Q gi|254780479|r 103 DIIVKKYE-------GNFPHKVEILKKLPGIGDYTASAIVAIAFNHF-AVVVDTNIERIISRYFDIIKP 163 (356) Q Consensus 103 ~~i~~~~~-------g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~-~~~vD~Nv~RVl~R~~~~~~~ 163 (356) +.+.+... ...++..++|++|||||+.||..|+.++++.+ +.++|.+|+|++.|+++.... T Consensus 189 ~~i~~g~~~l~~l~~~~~~e~~~~L~~i~GIG~wtAd~ilLf~lg~~d~fPvD~~i~r~~~~~y~~~~~ 257 (290) T 3i0w_A 189 DRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAPDV 257 (290) T ss_dssp HHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCTTC T ss_pred HHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCC T ss_conf 988438522888743770679999986799488999999999679999676349999999996599999 No 14 >2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Probab=99.60 E-value=6.1e-15 Score=124.20 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=125.1 Q ss_pred CCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH--------------CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 8704676644673116120332658998774--------------89978987299899999974046345889998776 Q gi|254780479|r 37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQK--------------WPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCA 102 (356) Q Consensus 37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~~--------------~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a 102 (356) .|||..+|.-|+-||..|+.....+.++.++ |||++.||+++++++..+ |++ ++||+.|+..| T Consensus 116 ~d~fE~lv~aIl~Qqis~~aA~~i~~rl~~~~G~~~~~~~~~~~~fPtp~~la~~~~~~L~~~--Gl~-~~Ka~~i~~lA 192 (295) T 2jhn_A 116 MSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGLREC--GLS-RRKAELIVEIA 192 (295) T ss_dssp SSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHT--TCC-HHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHCCCHHHHHHC--CCC-HHHHHHHHHCC T ss_conf 899999999998515219999999999999958866776301037999999984999999778--973-88999998501 Q ss_pred HHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHH-HCC Q ss_conf 7543005786873--1456888887778776677664349631312-43146665765197545735689998741-025 Q gi|254780479|r 103 DIIVKKYEGNFPH--KVEILKKLPGIGDYTASAIVAIAFNHFAVVV-DTNIERIISRYFDIIKPAPLYHKTIKNYA-RKI 178 (356) Q Consensus 103 ~~i~~~~~g~~P~--~~~~l~~LpGiG~yta~ai~s~a~~~~~~~v-D~Nv~RVl~R~~~~~~~~~~~~k~l~~~~-~~~ 178 (356) +.+..+.-...|. -.+.|++|||||+.||..|+.++++..+.++ |..|+|.+.|+|+.....+ .+.+..++ +.+ T Consensus 193 ~~~~~~~l~~~~~~e~~~~L~~i~GIGpWTA~~ill~~lg~d~fP~~D~~l~ral~~ly~~~~~~~--~~~~~~~a~e~w 270 (295) T 2jhn_A 193 KEENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALGKNVFPADDLGVRRAVSRLYFNGEIQS--AEKVREIARERF 270 (295) T ss_dssp TCSSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCCTTCHHHHHHHHHHHSTTCCCC--HHHHHHHHHHHT T ss_pred CCCCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHC T ss_conf 135556541288588888998459948899999999816989522745999999999707888999--999999998757 Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 7852267899999999863204123 Q gi|254780479|r 179 TSTSRPGDFVQAMMDLGALICTSNK 203 (356) Q Consensus 179 ~~~~~~~~~nQAlMdlGa~iC~p~~ 203 (356) -| ..+-..+-|-.+++..|++++ T Consensus 271 ~P--yrsya~~~Lw~~~R~~~~k~~ 293 (295) T 2jhn_A 271 GR--FARDILFYLFLYDRFFSKKTE 293 (295) T ss_dssp GG--GHHHHHHHHHHHHHHTTC--C T ss_pred CC--HHHHHHHHHHHHCHHHCCCCC T ss_conf 65--999999999984631155335 No 15 >3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Probab=99.45 E-value=4.2e-13 Score=111.24 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=85.1 Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHH------HHHCCCCCCCCEECCCEEEEEEEEEEEEEEEE Q ss_conf 200034137605776457201320474421111346721588------86301010000213735899831599999999 Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNI------DTHSAPFTANWILCNTITHTFTHFTLTLFVWK 314 (356) Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~------~~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~ 314 (356) .+..++.++|+|||.||++++.|+|+|+||++..+.++.... .++..........+..+.|.|+|+++.+.+|. T Consensus 24 vva~ii~~~~~iLl~kR~~~~~~~g~W~~PgG~ie~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (153) T 3ees_A 24 VVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILILFYE 103 (153) T ss_dssp EEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEEEEE T ss_pred EEEEEEEECCEEEEEECCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCEEEEEEEE T ss_conf 99999997999999994899999992989788984896777889999998629548862468899876799669999999 Q ss_pred EECC----CCCCCCCCEEECHHHHHHCCCCHHHHHHH----HHCCCC Q ss_conf 9807----76766781332278887479987899999----844823 Q gi|254780479|r 315 TIVP----QIVIIPDSTWHDAQNLANAALPTVMKKAL----SAGGIK 353 (356) Q Consensus 315 ~~~~----~~~~~~~~~Wv~~~el~~~~LPs~~kKIL----~alg~~ 353 (356) +... ......+++|+++++|.+++||.+++++| +++|+. T Consensus 104 ~~~~~~~~~~~e~~~~~Wv~~~el~~~~~~~~~~~ii~~l~k~l~~~ 150 (153) T 3ees_A 104 ILYWKGEPRAKHHMMLEWIHPEELKHRNIPEANRKILHKIYKALGLE 150 (153) T ss_dssp ECEEESCCCCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTTCC T ss_pred EEEECCEECCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 99728816678550489988999351899850899999999974232 No 16 >2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, structural genomics, PSI-2, protein structure initiative; 2.55A {Bacillus halodurans} Probab=99.35 E-value=6.4e-12 Score=102.95 Aligned_cols=140 Identities=17% Similarity=0.254 Sum_probs=110.7 Q ss_pred CCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH----CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-- Q ss_conf 8704676644673116120332658998774----8997898729989999997404634588999877675430057-- Q gi|254780479|r 37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQK----WPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYE-- 110 (356) Q Consensus 37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~~----~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~-- 110 (356) .|||..+|.-|.-||..++.....|.|+.++ ||+++.+++++++++..+ ||+ +++++.++..|+.+.+... T Consensus 49 ~d~Fe~Lv~~Ii~QQiS~~aA~ti~~Rl~~~~G~~~p~p~~l~~~~~~~Lr~~--Gls-~~K~~~i~~la~~~~~g~~~~ 125 (233) T 2h56_A 49 PNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQA--GVS-KRKIEYIRHVCEHVESGRLDF 125 (233) T ss_dssp SCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHHT--TCC-HHHHHHHHHHHHHHHTTSSCH T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHC--CCC-HHHHHHHHHHHHHHHHCCCCC T ss_conf 99899999999818314999999999999994899999688862999999777--997-878999999999998177520 Q ss_pred ---CCCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf ---86873--145688888777877667766434963-1312-43146665765197545735689998741025785 Q gi|254780479|r 111 ---GNFPH--KVEILKKLPGIGDYTASAIVAIAFNHF-AVVV-DTNIERIISRYFDIIKPAPLYHKTIKNYARKITST 181 (356) Q Consensus 111 ---g~~P~--~~~~l~~LpGiG~yta~ai~s~a~~~~-~~~v-D~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~~~ 181 (356) ...+. -.+.|+++||||+.||..|+-|+++.+ +.++ |..|+|.+.++++..... .++.+..+++.+-|- T Consensus 126 ~~l~~~~~~e~~~~L~~ikGIGpWTA~~illf~lgr~DvfP~~Dl~l~ra~~~ly~~~~~~--~~~~~~~~ae~w~Py 201 (233) T 2h56_A 126 TELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGD--GKKLLIYHGKAWAPY 201 (233) T ss_dssp HHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSCSC--HHHHHHHHHGGGTTC T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCH T ss_conf 0101268889999988068848789999999968999789863799999999982888899--899999998727889 No 17 >3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrolase, structural genomics; 2.10A {Bartonella henselae str} Probab=99.26 E-value=1.8e-11 Score=99.70 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=90.0 Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC------CC--CE Q ss_conf 00123443222222112320003413760577645720132047442111134672158886301010------00--02 Q gi|254780479|r 223 SHLLGINTIKKKRPMRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT------AN--WI 294 (356) Q Consensus 223 ~~~~P~kk~KKkk~~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~------~~--~~ 294 (356) +...|...+.+..... ..+.++++.+|++||.||++++.++|+|+||++..+.+++......++... .. .. T Consensus 15 ~~~~P~~~p~~~~~~~-vva~~ii~~~g~vLl~kR~~~~~~~g~W~~PgG~ve~~Et~~~aa~RE~~EE~gl~~~~~~~~ 93 (158) T 3hhj_A 15 QTQGPGSMPIKSSLLI-VVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLF 93 (158) T ss_dssp ------------CEEE-EEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCE T ss_pred HCCCCCCCCCCCCCEE-EEEEEEEECCCEEEEEECCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 3219877788897189-999999977998999993799999990999887898996689999999999858840353699 Q ss_pred ECCCEEEEEEEEEEEEEEEEEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 1373589983159999999998077----6766781332278887479987899999844 Q gi|254780479|r 295 LCNTITHTFTHFTLTLFVWKTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 295 ~l~~ikH~fTH~~L~i~v~~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) ....+.|.++++.+.+.+|.+...+ .....+++|++++++.++++|.+.+++++.| T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~ii~~L 153 (158) T 3hhj_A 94 PLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEADKPLVQVL 153 (158) T ss_dssp EEEEEEEECSSCEEEEEEEEESCCBSCCCCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHH T ss_pred EEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHEEEEEEHHHHHHCCCCCCHHHHHHHH T ss_conf 899986048985699999999806896288801358996499950388983089999999 No 18 >1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Probab=99.15 E-value=1.8e-11 Score=99.81 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=86.9 Q ss_pred EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHH------HHHHCCCCCCCCEECCCEEEEEEEEEEEEEEE Q ss_conf 320003413760577645720132047442111134672158------88630101000021373589983159999999 Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGN------IDTHSAPFTANWILCNTITHTFTHFTLTLFVW 313 (356) Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~------~~~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~ 313 (356) ..++++++.+|++||.||+.++.++|+|+||++..+.++... +.++..........+..+.|.++|++..+.+| T Consensus 6 v~v~ii~~~~~~iLl~kR~~~~~~~g~w~~PgG~ve~gEs~~~a~~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129) T 1mut_A 6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFW 85 (129) T ss_dssp CCCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCE T ss_pred EEEEEEEECCCEEEEEEECCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEE T ss_conf 99999997899999999149999999698978789889686789999999985986300589999999889978999999 Q ss_pred EEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 998077----6766781332278887479987899999844 Q gi|254780479|r 314 KTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 314 ~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) .+.... .....+++|++.+++.+++||.+++++++.| T Consensus 86 ~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~a~~~ii~~L 126 (129) T 1mut_A 86 LVERWEGEPWGKEGQPGEWMSLVGLNADDFPPANEPVIAKL 126 (129) T ss_dssp EEEECSSCCCCCSSCCCEEEESSSCCTTTSCTTCHHHHHHH T ss_pred EEEEECCCCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHH T ss_conf 99962685067844158998799934599984189999999 No 19 >1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* Probab=99.14 E-value=3.9e-10 Score=90.36 Aligned_cols=134 Identities=20% Similarity=0.266 Sum_probs=103.2 Q ss_pred CCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH-------------CCCHHHHHCCCHHHHHHHHHCCCH-HHHHHHHHH Q ss_conf 678704676644673116120332658998774-------------899789872998999999740463-458899987 Q gi|254780479|r 35 SLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQK-------------WPTIFCLSSAKDEEILSAWAGLGY-YTRARNLKK 100 (356) Q Consensus 35 ~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~-------------~P~~~~la~a~~~~vl~~w~gLGy-y~Rar~l~~ 100 (356) ..-|||..+|.-|.-||..|+.....+.++.++ |||++.+|+++++++ ..+|. .+||+.|+. T Consensus 109 ~~~d~fE~lvraIlgQQvS~~aA~~i~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~Gls~~ka~~i~~ 184 (282) T 1mpg_A 109 GCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIH 184 (282) T ss_dssp CCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH----HHCCCCCHHHHHHHH T ss_conf 9999999999999827451999999999999986887776765457777999974999999----654886047999999 Q ss_pred HHHHHHHCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EC-CCCHHHHHHHHHCCCCCCCHHHHHHHH Q ss_conf 767543005-786----87314568888877787766776643496313-12-431466657651975457356899987 Q gi|254780479|r 101 CADIIVKKY-EGN----FPHKVEILKKLPGIGDYTASAIVAIAFNHFAV-VV-DTNIERIISRYFDIIKPAPLYHKTIKN 173 (356) Q Consensus 101 ~a~~i~~~~-~g~----~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~-~v-D~Nv~RVl~R~~~~~~~~~~~~k~l~~ 173 (356) .|+.+.+.- +-. ..+-.+.|++|||||+.||..|+-++++.+.. ++ |-.++|.+.++ ..+.+.. T Consensus 185 lA~~~~~g~l~~~~~~~~ee~~~~L~~l~GIGpWTA~~vll~~lg~~D~fp~~Dl~l~~~~~~l---------~~~~~~~ 255 (282) T 1mpg_A 185 LANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGM---------TPAQIRR 255 (282) T ss_dssp HHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTTC---------CHHHHHH T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC---------CHHHHHH T ss_conf 9999974984213436889999999976798869999999997699883874349999874108---------9999999 Q ss_pred HHHCCCCC Q ss_conf 41025785 Q gi|254780479|r 174 YARKITST 181 (356) Q Consensus 174 ~~~~~~~~ 181 (356) +++.+-|- T Consensus 256 ~ae~w~P~ 263 (282) T 1mpg_A 256 YAERWKPW 263 (282) T ss_dssp HHGGGTTC T ss_pred HHHHCCCH T ss_conf 99855699 No 20 >3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Probab=99.07 E-value=4.2e-10 Score=90.15 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=80.1 Q ss_pred EEEECCCEEEEEECCCC--HHHHCCCCCCCCCCCCCCCHHHH------HHCCCCCCCCEECCCEEEEEEEEEEEEEEEEE Q ss_conf 03413760577645720--13204744211113467215888------63010100002137358998315999999999 Q gi|254780479|r 244 IAITNDNRILLRKRTNT--RLLEGMDELPGSAWSSTKDGNID------THSAPFTANWILCNTITHTFTHFTLTLFVWKT 315 (356) Q Consensus 244 vii~~~~kiLL~KRp~~--gll~GLwEFP~~e~~~~~~~~~~------~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~ 315 (356) .++.+++++||.||... ..++|+|+||++..+.+++.... ++..........+..+.|.++++.+.+.+|.+ T Consensus 11 aii~~~~~~Ll~~R~~~~~~~~~g~W~~PGG~ie~gEs~~ea~~RE~~EE~Gi~v~~~~~l~~~~~~~~~~~~~~~~f~~ 90 (140) T 3gwy_A 11 AVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLC 90 (140) T ss_dssp EEEEETTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEEEEEEEE T ss_pred EEEEECCEEEEEEECCCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEEEEEEEEE T ss_conf 99997999999997798888879929898979969999899999999885096414201788998617996899999999 Q ss_pred ECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCC Q ss_conf 8077----67667813322788874799878999998448 Q gi|254780479|r 316 IVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAGG 351 (356) Q Consensus 316 ~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg 351 (356) .... .....+++|++++++.+++|+.+.++||+.|- T Consensus 91 ~~~~~~~~~~E~~~~~Wv~~~el~~l~~~~ad~~il~~L~ 130 (140) T 3gwy_A 91 HPVGQRYVLKEHIAAQWLSTREMAILDWAEADKPIVRKIS 130 (140) T ss_dssp EECCSCCCCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHH T ss_pred EEECCCCCCCCEEEEEEEEHHHHHHCCCCHHHHHHHHHHH T ss_conf 9828954788100479977999723899851799999999 No 21 >3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.70A {Methanosarcina mazei} Probab=98.77 E-value=5.2e-08 Score=75.40 Aligned_cols=115 Identities=12% Similarity=0.151 Sum_probs=79.8 Q ss_pred CCEEEEEEEEEECCCEEEEEECCC-CHHHHCCCCCCCCCCCCCCCHHHHH------HCCCCCCCCEECCCEEEEEEEEEE Q ss_conf 211232000341376057764572-0132047442111134672158886------301010000213735899831599 Q gi|254780479|r 236 PMRTGAVFIAITNDNRILLRKRTN-TRLLEGMDELPGSAWSSTKDGNIDT------HSAPFTANWILCNTITHTFTHFTL 308 (356) Q Consensus 236 ~~r~~~~~vii~~~~kiLL~KRp~-~gll~GLwEFP~~e~~~~~~~~~~~------~~~~~~~~~~~l~~ikH~fTH~~L 308 (356) |......++|.+.+|++||.||.. ++.++|+|+||++..+.+++..... +..........++.+.|.+++.+. T Consensus 6 p~~~~V~aii~n~~g~iLl~kR~~~~~~~~g~W~~PgG~ie~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 85 (153) T 3grn_A 6 PYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKV 85 (153) T ss_dssp CEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEE T ss_pred CEEEEEEEEEEECCCEEEEEEECCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEE T ss_conf 87899999999899929999944889999991999773140898957733167999879813120699999888699879 Q ss_pred EEEEEEEECCCC-----CCCCCCEEECHHHHHHCC-CCHHHHHHHHHC Q ss_conf 999999980776-----766781332278887479-987899999844 Q gi|254780479|r 309 TLFVWKTIVPQI-----VIIPDSTWHDAQNLANAA-LPTVMKKALSAG 350 (356) Q Consensus 309 ~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~~~-LPs~~kKIL~al 350 (356) ...+|.+..... ....+++|++.+++.++. +|...+.+++.+ T Consensus 86 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~p~~~~~~~~~~ 133 (153) T 3grn_A 86 IAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFERF 133 (153) T ss_dssp EEEEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHH T ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHH T ss_conf 999999998079626994224789977999842899937899999999 No 22 >3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Probab=98.70 E-value=1.1e-07 Score=73.02 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=68.5 Q ss_pred EEEEEECCCEEEEEECCCC-HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEC-----CCE------------EEEE Q ss_conf 0003413760577645720-132047442111134672158886301010000213-----735------------8998 Q gi|254780479|r 242 VFIAITNDNRILLRKRTNT-RLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILC-----NTI------------THTF 303 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l-----~~i------------kH~f 303 (356) +..+++.+|++||.||+++ +.+.|+|+||++..+.++........+..++....+ ..+ .+.. T Consensus 31 v~~ii~~~gkvLL~kR~~~~~~~~g~W~~PGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~ 110 (165) T 3oga_A 31 VCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQ 110 (165) T ss_dssp EEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--CCE T ss_pred EEEEEECCCEEEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEECCEEEEEEECCCEEEECCCCCC T ss_conf 99999889989999917999999992999793895998978988899999879705631112268613301220147886 Q ss_pred EEEEEEEEEEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCC Q ss_conf 3159999999998077-----676678133227888747998789999984482 Q gi|254780479|r 304 THFTLTLFVWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMKKALSAGGI 352 (356) Q Consensus 304 TH~~L~i~v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~ 352 (356) .++.....+|.+.... ..+..++.|++++++.+++++..+|++|...|+ T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~l~~~~r~~l~~~~~ 164 (165) T 3oga_A 111 EEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGL 164 (165) T ss_dssp EEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGGSCBCHHHHHHHHHTTC T ss_pred CEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCHHHHHHHHHHCC T ss_conf 349999999999617897069831578999879997159999899999886104 No 23 >3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Probab=98.13 E-value=2.7e-05 Score=56.28 Aligned_cols=104 Identities=11% Similarity=0.089 Sum_probs=63.3 Q ss_pred EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEEE-EE----EEEEEE Q ss_conf 00341376057764572013204744211113467215888630101000------02137358998-31----599999 Q gi|254780479|r 243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTITHTF-TH----FTLTLF 311 (356) Q Consensus 243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~f-TH----~~L~i~ 311 (356) .+++.+++++||.||+.. |.|.||++..+.++.......++..++. ....+.+.+.+ .+ ....+. T Consensus 8 ~ciI~~~~kvLL~~r~~~----g~W~~PGG~ie~gEt~~eAa~REv~EEtGl~v~~~~l~~v~~~~~~~~~~~~~~~~~~ 83 (188) T 3fk9_A 8 NCIVVDHDQVLLLQKPRR----GWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLF 83 (188) T ss_dssp EEEEEETTEEEEEECTTT----CCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEE T ss_pred EEEEEECCEEEEEEECCC----CEEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEEEEE T ss_conf 999996999999997899----9698943395799899999999989986876667369999989844799604699999 Q ss_pred EEEEECCCC-----CCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 999980776-----766781332278887479987899999844 Q gi|254780479|r 312 VWKTIVPQI-----VIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 312 v~~~~~~~~-----~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) +|.+..... ....+.+|++.+++.+++++..+++++..+ T Consensus 84 ~f~~~~~~g~~~~~~e~~~~~Wv~~del~~l~l~~~d~~il~~~ 127 (188) T 3fk9_A 84 TFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHV 127 (188) T ss_dssp EEEESCEESCCCSEETTEEEEEEEGGGGGGSCCCHHHHHHHHHH T ss_pred EEEEECCCCEECCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHH T ss_conf 99998787817699942247998899952699982289999999 No 24 >1iry_A HMTH1; nudix motif(G37-L59), hydrolase; NMR {Homo sapiens} SCOP: d.113.1.1 Probab=98.09 E-value=4.5e-06 Score=61.72 Aligned_cols=106 Identities=8% Similarity=-0.047 Sum_probs=64.8 Q ss_pred EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCC------CCEECCCEEEEEEEEEEEEEEEEEE Q ss_conf 0034137605776457201320474421111346721588863010100------0021373589983159999999998 Q gi|254780479|r 243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTA------NWILCNTITHTFTHFTLTLFVWKTI 316 (356) Q Consensus 243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~------~~~~l~~ikH~fTH~~L~i~v~~~~ 316 (356) .+++.++|++||.+|. ++..+|+|+||++..+.+++......++...+ .....+.+.|.+......+.++... T Consensus 9 ~v~i~~~~~vLL~~r~-~~~~~G~W~~PGG~ie~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (156) T 1iry_A 9 LVLVLQPQRVLLGMKK-RGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFC 87 (156) T ss_dssp EECEECSSEEEEEEES-SSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCEEEEEEEC T ss_pred EEEEEECCEEEEEEEC-CCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEECCCCCEEEEEEEEE T ss_conf 9999989999999907-899999599817657689998999999999975907567668868998618998899999999 Q ss_pred CC------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH Q ss_conf 07------7676678133227888747998789999984 Q gi|254780479|r 317 VP------QIVIIPDSTWHDAQNLANAALPTVMKKALSA 349 (356) Q Consensus 317 ~~------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a 349 (356) .. ......+..|++.+++..++++...++++.. T Consensus 88 ~~~~~~~~~~~e~~~~~w~~~~~l~~~~~~~~~~~~l~~ 126 (156) T 1iry_A 88 TDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPL 126 (156) T ss_dssp CCCBCSCCCCCSSEEEEEEETTCCCSTTTCSSHHHHHHH T ss_pred EEECCCCCCCCCHHHEEEEEHHHCCCCCCCCHHHHHHHH T ss_conf 950256408994260468459997868899018999999 No 25 >2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A* Probab=98.07 E-value=8.2e-05 Score=52.88 Aligned_cols=106 Identities=9% Similarity=-0.035 Sum_probs=61.5 Q ss_pred EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCC------CCCCCEECCCEEEEEEE----EEEE Q ss_conf 3200034137605776457201320474421111346721588863010------10000213735899831----5999 Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAP------FTANWILCNTITHTFTH----FTLT 309 (356) Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~------~~~~~~~l~~ikH~fTH----~~L~ 309 (356) ..+..++.++|++||.||.. |.|.||++..+.+++.......+. .......++.+.+.+++ .... T Consensus 5 ~aag~vv~~~~kiLl~~r~~-----g~W~lPgG~~e~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (134) T 2pbt_A 5 FSAGGVLFKDGEVLLIKTPS-----NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKT 79 (134) T ss_dssp EEEEEEEEETTEEEEEECTT-----SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEE T ss_pred EEEEEEEEECCEEEEEEECC-----CCEECCEEEECCCCCHHHHHHHHHHHEECEEEEEEEEEEEEEEEECCCCCEEEEE T ss_conf 99999999999999999579-----9899974361799899999987654312527898325645667853799708899 Q ss_pred EEEEEEECC----C-CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 999999807----7-6766781332278887479987899999844 Q gi|254780479|r 310 LFVWKTIVP----Q-IVIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 310 i~v~~~~~~----~-~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) +.+|.+... . .....+.+|++.+++.++......+++|+.+ T Consensus 80 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~ 125 (134) T 2pbt_A 80 VKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKA 125 (134) T ss_dssp EEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHCCSHHHHHHHHHH T ss_pred EEEEEEEECCCCCCCCHHHEEEEEEEHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999659958579133388998699987541896699999999 No 26 >3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Probab=97.98 E-value=2.9e-05 Score=56.08 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=69.0 Q ss_pred CCCEEEEEEEEEE-CCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEEEE--E Q ss_conf 2211232000341-376057764572013204744211113467215888630101000------021373589983--1 Q gi|254780479|r 235 RPMRTGAVFIAIT-NDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTITHTFT--H 305 (356) Q Consensus 235 k~~r~~~~~vii~-~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~fT--H 305 (356) .|.......+|.+ .++++||.||. +.-|.|.|+||++..+.+++.......+...+. ...++.+.+.++ + T Consensus 7 ~p~~~~~~v~I~~~~~~~lLl~~r~-~~~~~~~W~~PGG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~ 85 (161) T 3exq_A 7 QPVELVTMVMVTDPETQRVLVEDKV-NVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ 85 (161) T ss_dssp CCEEEEEEEEEBCTTTCCEEEECCC-CCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS T ss_pred CCEEEEEEEEEEECCCCEEEEEEEC-CCCCCCCEECCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCC T ss_conf 7737999999997999999999969-999899499966536189998999999999986981412599999976228998 Q ss_pred EEEEEEEEEEECC----CCCCCCCCEEECHHHHHHCCCCHHHHHHHHHCC Q ss_conf 5999999999807----767667813322788874799878999998448 Q gi|254780479|r 306 FTLTLFVWKTIVP----QIVIIPDSTWHDAQNLANAALPTVMKKALSAGG 351 (356) Q Consensus 306 ~~L~i~v~~~~~~----~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg 351 (356) .+....+|.+... ......+.+|++.+++.++.++..+++++.... T Consensus 86 ~~~~~~~f~~~~~~~~~~~~e~~e~~Wv~~~el~~~~~~~~~~~~l~~~~ 135 (161) T 3exq_A 86 HRKLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAASLPEFLQVFT 135 (161) T ss_dssp SEEEEEEEEECCEESCCCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHT T ss_pred EEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHH T ss_conf 39999999997166610799874689989999876889566999999862 No 27 >3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Probab=97.93 E-value=5e-05 Score=54.40 Aligned_cols=111 Identities=11% Similarity=0.113 Sum_probs=64.3 Q ss_pred CEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEC--CCEEEEE---EEEEEEEE Q ss_conf 112320003413760577645720132047442111134672158886301010000213--7358998---31599999 Q gi|254780479|r 237 MRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILC--NTITHTF---THFTLTLF 311 (356) Q Consensus 237 ~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l--~~ikH~f---TH~~L~i~ 311 (356) .......++++.+|++||.||.. +-+.|.|+||++..+.++........+..++..... ..+...+ .|+. .. T Consensus 19 ~~~~v~~vi~~~~~~vLl~~r~~-~~~~g~W~~PGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~--~~ 95 (156) T 3gg6_A 19 VCYVVLAVFLSEQDEVLLIQEAK-RECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERGPSWV--RF 95 (156) T ss_dssp CEEEEEEECBCTTSEEEEEECCC-TTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESSTTEE--EE T ss_pred CCEEEEEEEEECCCEEEEEEECC-CCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEECCCCEE--EE T ss_conf 76899999996899999999768-9999969997864608999899887888886484778624999981699899--99 Q ss_pred EEEEE-----CCCC----CCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 99998-----0776----766781332278887479987899999844 Q gi|254780479|r 312 VWKTI-----VPQI----VIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 312 v~~~~-----~~~~----~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) +|.+. .... ....+..|++++++.....+.-+.++++.+ T Consensus 96 ~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~ 143 (156) T 3gg6_A 96 VFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELA 143 (156) T ss_dssp EEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHH T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCHHHHHHHH T ss_conf 999999278214788898546999998499935566798469999999 No 28 >1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Probab=97.91 E-value=9.7e-05 Score=52.36 Aligned_cols=112 Identities=8% Similarity=-0.015 Sum_probs=63.6 Q ss_pred EEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE-EEEEEE Q ss_conf 2320003413760577645720132047442111134672158886301010000------213735899831-599999 Q gi|254780479|r 239 TGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH-FTLTLF 311 (356) Q Consensus 239 ~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH-~~L~i~ 311 (356) ....+++++.++++||.||.. |.|+||++..+.+++......++...+.. ..+..+.|...+ ....++ T Consensus 3 v~agavv~~~~~~vLl~~~~~-----g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 77 (126) T 1vcd_A 3 LGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVH 77 (126) T ss_dssp EEEEEEEECTTSCEEEEECTT-----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEE T ss_pred EEEEEEEEECCCEEEEEECCC-----CCEECCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEECCCCEEEEEE T ss_conf 999999998998999999079-----949998823559989999999999887380589866777899768997599999 Q ss_pred EEEEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCCCCC Q ss_conf 99998077----676678133227888747998789999984482379 Q gi|254780479|r 312 VWKTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAGGIKVP 355 (356) Q Consensus 312 v~~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~~~p 355 (356) .|.+.... .....+.+|++.+++.++......+++|+.+-.+.| T Consensus 78 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~~~lp 125 (126) T 1vcd_A 78 WFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLP 125 (126) T ss_dssp EEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHSC T ss_pred EEEEEECCCCCCCCCCEEEEEEEHHHHHHCCCCHHHHHHHHHHHHHCC T ss_conf 999997699679845228999889997632299669999999998679 No 29 >2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Probab=97.89 E-value=3e-05 Score=55.95 Aligned_cols=113 Identities=5% Similarity=0.002 Sum_probs=60.5 Q ss_pred EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEE---------------- Q ss_conf 3200034137605776457201320474421111346721588863010100002137358998---------------- Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTF---------------- 303 (356) Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~f---------------- 303 (356) ....+|++.+|++||.||... |.|+||++..+.++........+...+.......+.... T Consensus 10 ~Vg~vi~n~~gkvLl~kR~~~----g~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164) T 2kdv_A 10 NVGIVICNRQGQVMWARRFGQ----HSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVR 85 (164) T ss_dssp EEEEEEECTTSEEEEEEETTC----CCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTCC T ss_pred EEEEEEEECCCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEE T ss_conf 189999968992999998899----9189991660799898999999999875645444431268804302457642010 Q ss_pred -----EEEEEEEEEEEEECC-----------CCCCCCCCEEECHHHHHHCCCCH---H-------HHHHHHHCCCCCCC Q ss_conf -----315999999999807-----------76766781332278887479987---8-------99999844823799 Q gi|254780479|r 304 -----THFTLTLFVWKTIVP-----------QIVIIPDSTWHDAQNLANAALPT---V-------MKKALSAGGIKVPQ 356 (356) Q Consensus 304 -----TH~~L~i~v~~~~~~-----------~~~~~~~~~Wv~~~el~~~~LPs---~-------~kKIL~alg~~~p~ 356 (356) ..+....+.|.+... ......+++|++++++.+..+|- . .+|+|..+-...|| T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~fk~~v~~~~l~~f~~~i~~~~~~~p~ 164 (164) T 2kdv_A 86 WDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQENTPK 164 (164) T ss_dssp TTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHSCCC T ss_pred ECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 0035652230799999999358653035779983315748677999877511106999999999999999988753899 No 30 >2b06_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Probab=97.87 E-value=9.5e-05 Score=52.42 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=64.9 Q ss_pred EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE-EEEEE Q ss_conf 12320003413760577645720132047442111134672158886301010000------213735899831-59999 Q gi|254780479|r 238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH-FTLTL 310 (356) Q Consensus 238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH-~~L~i 310 (356) ....++++-+.++++||.+|..++-..|.|+||++..+.++.......++..++.. ..++.+.+.+.. .+..+ T Consensus 9 ~~~i~~i~~~~~~~vLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 88 (155) T 2b06_A 9 LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIV 88 (155) T ss_dssp EEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEEE T ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCEECCEEEECCCCCHHHHHHHHHHHHHCCEEECCEEEEEEEEECCCCCEEEE T ss_conf 98999999899999999998899999988999303286999999999999999869334312699999775399989999 Q ss_pred EEEEEEC----CCCCCCCCCEEECHHHHHHCCCCHHHHHHHHHCC Q ss_conf 9999980----7767667813322788874799878999998448 Q gi|254780479|r 311 FVWKTIV----PQIVIIPDSTWHDAQNLANAALPTVMKKALSAGG 351 (356) Q Consensus 311 ~v~~~~~----~~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg 351 (356) .+|.+.. .......+..|++.+++.++.++..+..+++.+- T Consensus 89 ~~~~~~~~~~~~~~~e~~~~~w~~~~el~~l~~~~~~~~~~~~~~ 133 (155) T 2b06_A 89 ICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMME 133 (155) T ss_dssp EEEEECEEEECCCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHH T ss_pred EEEEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHH T ss_conf 999999668723899406599988999136999833599999976 No 31 >3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Probab=97.85 E-value=3.7e-05 Score=55.33 Aligned_cols=108 Identities=14% Similarity=0.024 Sum_probs=61.3 Q ss_pred EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEEEEEEEE Q ss_conf 12320003413760577645720132047442111134672158886301010000------213735899831599999 Q gi|254780479|r 238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTHFTLTLF 311 (356) Q Consensus 238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH~~L~i~ 311 (356) +....++++ +++++||.||... .|.|+||++..+.+++.......+..++.. ..+..+.+...+.+.... T Consensus 23 ~v~v~aii~-~d~kvLL~kr~~~---~~~W~lPGG~ie~gEs~~eaa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 98 (171) T 3id9_A 23 QVRVTGILI-EDEKVLLVKQKVA---NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLLHI 98 (171) T ss_dssp EEEEEEEEE-ETTEEEEEECSST---TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEEEE T ss_pred EEEEEEEEE-ECCEEEEEEEECC---CCCEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEE T ss_conf 769999999-8999999997089---995989445770897989999999999869446883699999017899979999 Q ss_pred EEEEECC-----------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH Q ss_conf 9999807-----------7676678133227888747998789999984 Q gi|254780479|r 312 VWKTIVP-----------QIVIIPDSTWHDAQNLANAALPTVMKKALSA 349 (356) Q Consensus 312 v~~~~~~-----------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a 349 (356) +|.+... ......+..|++.++|..+.+|..+.++|+. T Consensus 99 ~f~~~~~~~~~~~~~~e~~~~e~~~~~Wv~~~eL~~~~~~~~~~~~i~~ 147 (171) T 3id9_A 99 TFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETFINLISG 147 (171) T ss_dssp EEEEEEC-------------CCCCCEEEEETGGGGGGTCCTTCSHHHHH T ss_pred EEEEEEECCCCCCCCCCCCHHHEEEEEEEEHHHCCCCCCCHHHHHHHHH T ss_conf 9999992683258976335112135788429992869999789999998 No 32 >2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4} Probab=97.66 E-value=0.0003 Score=48.91 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=60.8 Q ss_pred EEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC------CCCEECCCEEEEEEE----EEEEEEEE Q ss_conf 03413760577645720132047442111134672158886301010------000213735899831----59999999 Q gi|254780479|r 244 IAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT------ANWILCNTITHTFTH----FTLTLFVW 313 (356) Q Consensus 244 vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~------~~~~~l~~ikH~fTH----~~L~i~v~ 313 (356) .++.++|++||.|+. |.|.||++..+.++........+... .....++...+.+.+ ++....+| T Consensus 24 ~ii~~~~kvLl~r~~------g~w~~PGG~ve~gEt~~~aa~RE~~EEtGl~i~~~~~~~~~~~~~~~~~~~~~~~~~~f 97 (154) T 2pqv_A 24 ALIVQNHKLLVTKDK------GKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHY 97 (154) T ss_dssp ECCEETTEEEEEEET------TEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEEEEE T ss_pred EEEEECCEEEEEEEC------CEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEECCEEEEEEEECCCCCCEEEEEEEEE T ss_conf 999999999999869------98999802881998989988899999869536862399999877146994179999999 Q ss_pred EEECCCCC--------CCCCCEEECHHHHHHCCC-CHHHHHHHHHC Q ss_conf 99807767--------667813322788874799-87899999844 Q gi|254780479|r 314 KTIVPQIV--------IIPDSTWHDAQNLANAAL-PTVMKKALSAG 350 (356) Q Consensus 314 ~~~~~~~~--------~~~~~~Wv~~~el~~~~L-Ps~~kKIL~al 350 (356) .+...... ...++.|++.+++.++++ |...+.+|..+ T Consensus 98 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~P~~l~~~L~~~ 143 (154) T 2pqv_A 98 LVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDW 143 (154) T ss_dssp EEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEESTTHHHHTTTC T ss_pred EEEECCCCCCCCCCCCCEEEEEEEEHHHHHHCCCCCHHHHHHHHHH T ss_conf 9997689623369973478999989999514768948999999887 No 33 >1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Probab=97.66 E-value=0.00011 Score=51.89 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=64.6 Q ss_pred EEEEEEEE--ECCCEEEEEECCCC-HHHHCCCCCCCCCCCCCCCHHHH------HHCCCCCCCCEECCCEEEEEEEEEEE Q ss_conf 23200034--13760577645720-13204744211113467215888------63010100002137358998315999 Q gi|254780479|r 239 TGAVFIAI--TNDNRILLRKRTNT-RLLEGMDELPGSAWSSTKDGNID------THSAPFTANWILCNTITHTFTHFTLT 309 (356) Q Consensus 239 ~~~~~vii--~~~~kiLL~KRp~~-gll~GLwEFP~~e~~~~~~~~~~------~~~~~~~~~~~~l~~ikH~fTH~~L~ 309 (356) ...+++++ +.+.++||.||+.. +.++|.|+||++..+.+++.... ++..........++.+.+.+|+.... T Consensus 35 ~aaVli~l~~~~~~~vll~~Rs~~l~~h~G~~sfPGG~ie~gEt~~~aA~RE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~ 114 (194) T 1nqz_A 35 RAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFH 114 (194) T ss_dssp EEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEE T ss_pred EEEEEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCE T ss_conf 14999999979997899998588889999979588756546765789999999997564652367740256277136647 Q ss_pred EEEEEEECCC--------CCCCCCCEEECHHHHHHCCC Q ss_conf 9999998077--------67667813322788874799 Q gi|254780479|r 310 LFVWKTIVPQ--------IVIIPDSTWHDAQNLANAAL 339 (356) Q Consensus 310 i~v~~~~~~~--------~~~~~~~~Wv~~~el~~~~L 339 (356) +++|.+.+.. ..+..+..|++++++.+.+. T Consensus 115 V~p~v~~~~~~~~~~~~~~~EV~~v~~vpl~~L~~~~~ 152 (194) T 1nqz_A 115 VTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPL 152 (194) T ss_dssp EEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCC T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHCCCC T ss_conf 99999998475443447898368999716999606754 No 34 >1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Probab=97.64 E-value=5.4e-05 Score=54.13 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=59.1 Q ss_pred EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEE----------------- Q ss_conf 123200034137605776457201320474421111346721588863010100002137358----------------- Q gi|254780479|r 238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTIT----------------- 300 (356) Q Consensus 238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ik----------------- 300 (356) |.....+|+|.+|++||.||... .|.|+||++..+.+++.......+...+.......+. T Consensus 14 R~~Vgvvi~n~~~~vLl~kR~~~---~~~W~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 90 (165) T 1f3y_A 14 RRNVGICLMNNDKKIFAASRLDI---PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVRE 90 (165) T ss_dssp CCEEEEEEECTTSCEEEEEETTE---EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHH T ss_pred CCCEEEEEEECCCEEEEEEECCC---CCCEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEECCCHHHCC T ss_conf 66479999948994999997799---997889902675999878999999998761334332011145235425401001 Q ss_pred -----E--EEEEEEEEEEEEEEE--CCC---------CCCCCCCEEECHHHHHHCCCC--H-HHHHHHHHC Q ss_conf -----9--983159999999998--077---------676678133227888747998--7-899999844 Q gi|254780479|r 301 -----H--TFTHFTLTLFVWKTI--VPQ---------IVIIPDSTWHDAQNLANAALP--T-VMKKALSAG 350 (356) Q Consensus 301 -----H--~fTH~~L~i~v~~~~--~~~---------~~~~~~~~Wv~~~el~~~~LP--s-~~kKIL~al 350 (356) + .+............. ... .....+++|++.+++.+..+| . ..+++|+.+ T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~E~~e~rW~~~~el~~~iv~fKk~vy~~~l~~f 161 (165) T 1f3y_A 91 KLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVF 161 (165) T ss_dssp HHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHH T ss_pred CEEEEECCCCCCEEEEEEEEEEECCCCEEEECCCCCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 00055068634316799999992686226414889998503783878799977650021599999999998 No 35 >2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Probab=97.63 E-value=0.00046 Score=47.63 Aligned_cols=100 Identities=11% Similarity=0.131 Sum_probs=57.7 Q ss_pred CEEEEEEEEEECCCEEEEEECCCC-HHHHCCCCCC-CCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEEEEEEEE Q ss_conf 112320003413760577645720-1320474421-1113467215888630101000------0213735899831599 Q gi|254780479|r 237 MRTGAVFIAITNDNRILLRKRTNT-RLLEGMDELP-GSAWSSTKDGNIDTHSAPFTAN------WILCNTITHTFTHFTL 308 (356) Q Consensus 237 ~r~~~~~vii~~~~kiLL~KRp~~-gll~GLwEFP-~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~fTH~~L 308 (356) .+... .++.+.+|++||.||+.. ..+.|+|++| ++..+.+++...........+. ...++.+.+.-.+... T Consensus 37 h~~v~-v~v~~~~g~iLl~rRs~~k~~~pg~W~~~~GG~ve~GEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~ 115 (180) T 2fkb_A 37 HRATY-IVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRV 115 (180) T ss_dssp EEEEE-EEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEE T ss_pred EEEEE-EEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEE T ss_conf 57999-99995999799999179888999847267884458997989999999999869612121388899952898579 Q ss_pred EEEEEEEECCCC-----CCCCCCEEECHHHHHHC Q ss_conf 999999980776-----76678133227888747 Q gi|254780479|r 309 TLFVWKTIVPQI-----VIIPDSTWHDAQNLANA 337 (356) Q Consensus 309 ~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~~ 337 (356) ...+|.+..... ....++.|++.+++... T Consensus 116 ~~~~~~~~~~~~~~~~~~Ev~e~~W~~~~el~~~ 149 (180) T 2fkb_A 116 WGALFSCVSHGPFALQEDEVSEVCWLTPEEITAR 149 (180) T ss_dssp EEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTT T ss_pred EEEEEEEEECCCCCCCHHHEEEEEEEEHHHHHHH T ss_conf 9999999889986699679259999769998632 No 36 >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} Probab=97.63 E-value=0.00012 Score=51.78 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=61.8 Q ss_pred EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCC----EEEEEEEEEEEEEEEEE Q ss_conf 32000341376057764572013204744211113467215888630101000021373----58998315999999999 Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNT----ITHTFTHFTLTLFVWKT 315 (356) Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~----ikH~fTH~~L~i~v~~~ 315 (356) ..+.+++..++++||.||... -..|.|.+|++..+.+++.......+..++....+.. ..+.+.+.+..+.+|.+ T Consensus 41 v~v~~ii~~~~~vLLv~r~~~-~~~g~W~lPGG~ve~GEs~eeaa~REv~EEtGl~v~~~~l~~~~~~~~~~~~~~~f~~ 119 (189) T 3cng_A 41 VIVGCIPEWENKVLLCKRAIA-PYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLPHISQVYMLFRA 119 (189) T ss_dssp EEEEEEEEETTEEEEEEESSS-SSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGGGTEEEEEEEE T ss_pred EEEEEEEECCCCEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCEEEEEEEE T ss_conf 599999984992889963689-9998582884235689899999889988754926887589889715889736999999 Q ss_pred ECCCC-----CCCCCCEEECHHHHH--HCCCCH Q ss_conf 80776-----766781332278887--479987 Q gi|254780479|r 316 IVPQI-----VIIPDSTWHDAQNLA--NAALPT 341 (356) Q Consensus 316 ~~~~~-----~~~~~~~Wv~~~el~--~~~LPs 341 (356) .+... ....+.+|++.++|. .+++|+ T Consensus 120 ~~~~~~~~~~~E~~e~~wf~~~elp~~~laf~~ 152 (189) T 3cng_A 120 KLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRV 152 (189) T ss_dssp EECCSCCCCCTTEEEEEEECTTTCCGGGBSCHH T ss_pred EECCCCCCCCCCCCCCEEEEHHHCCCCCCCCHH T ss_conf 825894447870102579879999850017668 No 37 >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Probab=97.61 E-value=0.0002 Score=50.08 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=62.8 Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC------CEEEEEEEEEEEEEEEE Q ss_conf 200034137605776457201320474421111346721588863010100002137------35899831599999999 Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN------TITHTFTHFTLTLFVWK 314 (356) Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~------~ikH~fTH~~L~i~v~~ 314 (356) .+.+++.+++++||.++... -+|+|.||++..+.++........+..++...... +....|.|. -+..|. T Consensus 142 ~vivli~~~~~iLL~R~~~~--~~g~WslPgGfVE~GEt~eeAa~REv~EEtGl~v~~~~~~~s~~~~~~~~--l~~~F~ 217 (269) T 1vk6_A 142 CIIVAIRRDDSILLAQHTRH--RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQS--LMTAFM 217 (269) T ss_dssp EEEEEEEETTEEEEEEETTT--CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEE--EEEEEE T ss_pred EEEEEEEECCEEEEEEECCC--CCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCE--EEEEEE T ss_conf 59999983998999973368--99857601665438998999988987652234998667999953798887--999999 Q ss_pred EECC------CCCCCCCCEEECHHHHHHCCCCH-HHHHHHH Q ss_conf 9807------76766781332278887479987-8999998 Q gi|254780479|r 315 TIVP------QIVIIPDSTWHDAQNLANAALPT-VMKKALS 348 (356) Q Consensus 315 ~~~~------~~~~~~~~~Wv~~~el~~~~LPs-~~kKIL~ 348 (356) +... +..+..+.+|++.+++..+|.+. ..+++|+ T Consensus 218 a~~~~gei~~d~~Ei~ea~WFs~deLp~LP~~~sIAr~LI~ 258 (269) T 1vk6_A 218 AEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIE 258 (269) T ss_dssp EEEEECCCCCCTTTEEEEEEEETTSCCSCCCTTSHHHHHHH T ss_pred EEECCCCCCCCCCCEEEEEEECHHHCCCCCCCCCHHHHHHH T ss_conf 99878954699324527889878983107996129999999 No 38 >2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneopterin triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Probab=97.59 E-value=0.00033 Score=48.60 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=61.6 Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCC-------------EEE Q ss_conf 200034137605776457201320474421111346721588863010100002------1373-------------589 Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNT-------------ITH 301 (356) Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~-------------ikH 301 (356) .+.++.++++++||.+|... .|+|.||++..+.+++.......+..++... .... ..| T Consensus 13 ~vvi~~~~~~~vLl~~r~~~---~~~W~~PgG~ve~gEs~~~aa~RE~~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (150) T 2o1c_A 13 LVVIYAQDTKRVLMLQRRDD---PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRH 89 (150) T ss_dssp EEEEEETTTCEEEEEECSSS---TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCGGGGG T ss_pred EEEEEECCCCEEEEEEEECC---CCCEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEE T ss_conf 99999808998999998089---995999850466998999999899999859720012156765201001101205656 Q ss_pred EEE--EEEEEEEEEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 983--159999999998077-----6766781332278887479987899999844 Q gi|254780479|r 302 TFT--HFTLTLFVWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 302 ~fT--H~~L~i~v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) .+. .+......+....+. ..+..+++|++.+++.++.++-.++++|... T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~i~~~ 145 (150) T 2o1c_A 90 RYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQF 145 (150) T ss_dssp GBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHH T ss_pred EECCCCCCEEEEEEEEECCCCCCCCCCHHCEEEEEEHHHHHHCCCCHHHHHHHHHH T ss_conf 63475332189999997388887787300057990499997546998899999999 No 39 >2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Probab=97.59 E-value=0.00031 Score=48.82 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=61.0 Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE--EEEEEEEE Q ss_conf 0003413760577645720132047442111134672158886301010000------213735899831--59999999 Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH--FTLTLFVW 313 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH--~~L~i~v~ 313 (356) +.+++..+|++||.||...+ ..|.|+||++..+.++.......++..++.. ...+.+.+.++. ......+| T Consensus 11 V~~vi~~~~kvLlv~r~~~~-~~~~w~~PgG~ie~gEs~~~aa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (153) T 2b0v_A 11 VAAVIEQDDKYLLVEEIPRG-TAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTF 89 (153) T ss_dssp EEEECEETTEEEEEEECSSS-SCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEE T ss_pred EEEEEEECCEEEEEEEECCC-CCCEEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEE T ss_conf 99999969999999984699-99989998237669979899999999998786663535888998740689948999999 Q ss_pred EEECC----C---CCCCCCCEEECHHHHHHCCC---CHHHHHHHHHC--CCCCC Q ss_conf 99807----7---67667813322788874799---87899999844--82379 Q gi|254780479|r 314 KTIVP----Q---IVIIPDSTWHDAQNLANAAL---PTVMKKALSAG--GIKVP 355 (356) Q Consensus 314 ~~~~~----~---~~~~~~~~Wv~~~el~~~~L---Ps~~kKIL~al--g~~~p 355 (356) .+... . .....+..|++.+++.+... +..+.+.|... |.+.| T Consensus 90 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~p~v~~~l~~~~~~~~~p 143 (153) T 2b0v_A 90 SGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAGKRYP 143 (153) T ss_dssp EEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHTTCCBC T ss_pred EEEECCCCCCCCCCCCEEEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 999857986758986568999831999753841358989999999998589988 No 40 >3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB, nucleoside triphosphatase; 2.69A {Escherichia coli apec O1} Probab=97.59 E-value=0.00057 Score=46.92 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=58.1 Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCEEEEEEE-EEEEEEEE Q ss_conf 200034137605776457201320474421111346721588863010100002------13735899831-59999999 Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTITHTFTH-FTLTLFVW 313 (356) Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~ikH~fTH-~~L~i~v~ 313 (356) .+.+++.++|++||.||...+ +|+|+||++..+.+++.......+..++... .++.+.....+ ......+| T Consensus 7 ~v~~vi~~~gkvLlv~r~~~~--~~~W~lPgG~ve~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~f 84 (153) T 3dku_A 7 TVACVVHAEGKFLVVEETING--KALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLF 84 (153) T ss_dssp EEEEEEEETTEEEEEEEESSS--CEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECTTCCEEEEEEE T ss_pred EEEEEEEECCEEEEEEECCCC--CCCEECCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEEEE T ss_conf 999999909999999977899--980999776851899999999899999855435443588999887799971799999 Q ss_pred EEECCCC-------CCCCCCEEECHHHHHHCCC--CHHHHHHHH Q ss_conf 9980776-------7667813322788874799--878999998 Q gi|254780479|r 314 KTIVPQI-------VIIPDSTWHDAQNLANAAL--PTVMKKALS 348 (356) Q Consensus 314 ~~~~~~~-------~~~~~~~Wv~~~el~~~~L--Ps~~kKIL~ 348 (356) .+..... ....+..|++.+++.+..- +-.+.+++. T Consensus 85 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~r~p~v~~~~~ 128 (153) T 3dku_A 85 AIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIR 128 (153) T ss_dssp EEECSSCCCBCCSSTTCCEEEEECHHHHHHCSCBSSTHHHHHHH T ss_pred EEEECCCCCCCCCCCCEEEEEEECHHHHHCCCCCCCHHHHHHHH T ss_conf 99965788777898653889981499975382018989999999 No 41 >1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative nudix hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Probab=97.55 E-value=0.00018 Score=50.39 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=55.2 Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCE---------------E Q ss_conf 00034137605776457201320474421111346721588863010100002------13735---------------8 Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTI---------------T 300 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~i---------------k 300 (356) .++++ .+|++||.+|+.. |.|+||++..+.+++......++..++... ....+ . T Consensus 5 ~~iv~-~d~~vLL~~r~~~----g~W~~PgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (156) T 1k2e_A 5 SGVLV-ENGKVLLVKHKRL----GVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE 79 (156) T ss_dssp EEECE-ETTEEEEEECTTT----CSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE T ss_pred EEEEE-ECCEEEEEEECCC----CEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCCCEEEEEE T ss_conf 99999-9999999998799----959998022628989788777889999897016746888880444556664189999 Q ss_pred EEE-----EEEEEEEEEEEEECCCCCCCCCCEEECHHHHHHCCCCHHHHHHHH Q ss_conf 998-----315999999999807767667813322788874799878999998 Q gi|254780479|r 301 HTF-----THFTLTLFVWKTIVPQIVIIPDSTWHDAQNLANAALPTVMKKALS 348 (356) Q Consensus 301 H~f-----TH~~L~i~v~~~~~~~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~ 348 (356) ..+ .|..+.. .+.+.. ......+.+|++.+++.++.+...+++++. T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~~~~~~~ 130 (156) T 1k2e_A 80 EVVKYPEETHIHFDL-IYLVKR-VGGDLKNGEWIDVREIDRIETFPNVRKVVS 130 (156) T ss_dssp EEEECSSCEEEEEEE-EEEEEE-EEECCCSCEEEEGGGGGGSCBSTTHHHHHH T ss_pred EEEECCCCCEEEEEE-EEEECC-CCCCEEEEEEEEHHHHHHCCCCHHHHHHHH T ss_conf 986037774389988-885035-899703349974999864889868999999 No 42 >3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Probab=97.52 E-value=0.00019 Score=50.31 Aligned_cols=102 Identities=12% Similarity=-0.028 Sum_probs=61.5 Q ss_pred EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEE--EEEEEEEEEEEEEEECCCC Q ss_conf 00341376057764572013204744211113467215888630101000021373589--9831599999999980776 Q gi|254780479|r 243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITH--TFTHFTLTLFVWKTIVPQI 320 (356) Q Consensus 243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH--~fTH~~L~i~v~~~~~~~~ 320 (356) .+++..++++||.+|. .|.|+||++..+.+++.......+..++.......+.+ .+++......+|.+..... T Consensus 20 ~~ii~~~~~vLLv~~~-----~G~W~lPGG~ve~gEt~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~v~~~~~~~~ 94 (163) T 3f13_A 20 TAIIEMPDGVLVTASR-----GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPFNAHKVYLCIAQGQ 94 (163) T ss_dssp EEECEETTEEEEEECC--------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSSEEEEEEEEEC-CC T ss_pred EEEEEECCEEEEEEEC-----CCEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCEEEEEEEEEECCC T ss_conf 9999819999999951-----99898990035699898999989999986933027899999916860499999997784 Q ss_pred ----CCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf ----766781332278887479987899999844 Q gi|254780479|r 321 ----VIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 321 ----~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) ....+..|++.+++. ..++...+.++.++ T Consensus 95 ~~~~~E~~~~~W~~~~el~-~~~~~~~r~il~~~ 127 (163) T 3f13_A 95 PKPQNEIERIALVSSPDTD-MDLFVEGRAILRRY 127 (163) T ss_dssp CCCCTTCCEEEEESSTTCS-SCBCHHHHHHHHHH T ss_pred CCCCCCEEEEEEECHHHCC-CCCCHHHHHHHHHH T ss_conf 1488443469997299988-87882159999999 No 43 >2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, protein structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis V583} SCOP: d.113.1.1 Probab=97.47 E-value=0.0022 Score=42.78 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=59.8 Q ss_pred CCEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHC------CCCCCCCEECCCEEEEEE----- Q ss_conf 211232000341376057764572013204744211113467215888630------101000021373589983----- Q gi|254780479|r 236 PMRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHS------APFTANWILCNTITHTFT----- 304 (356) Q Consensus 236 ~~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~------~~~~~~~~~l~~ikH~fT----- 304 (356) ..+.....|+++.+++++|..|... |.|.||++..+.+++....... .........++.+.+.+. T Consensus 16 ~~r~~~~~vi~~~~~~~lLl~~~~~----g~W~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 91 (148) T 2azw_A 16 QTRYAAYIIVSKPENNTMVLVQAPN----GAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQ 91 (148) T ss_dssp EECCEEEEECEEGGGTEEEEEECTT----SCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTT T ss_pred CCCCEEEEEEEECCCCEEEEEECCC----CCEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC T ss_conf 4687299999988999999999499----929995523259979899999999998696003205999998773146898 Q ss_pred -EEEEEEEEEEEECC-----CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH Q ss_conf -15999999999807-----7676678133227888747998789999984 Q gi|254780479|r 305 -HFTLTLFVWKTIVP-----QIVIIPDSTWHDAQNLANAALPTVMKKALSA 349 (356) Q Consensus 305 -H~~L~i~v~~~~~~-----~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a 349 (356) ++.....+|.+... ......+..|++.+++.++-.+..++-+++. T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~r~~v~~ 142 (148) T 2azw_A 92 TAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEK 142 (148) T ss_dssp EEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHH T ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHH T ss_conf 458999999999631366688765518999779999877479679999999 No 44 >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP} Probab=97.46 E-value=0.00094 Score=45.41 Aligned_cols=109 Identities=12% Similarity=0.089 Sum_probs=61.9 Q ss_pred EEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCE--EEEEEE----- Q ss_conf 232000341376057764572013204744211113467215888630101000------0213735--899831----- Q gi|254780479|r 239 TGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTI--THTFTH----- 305 (356) Q Consensus 239 ~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~i--kH~fTH----- 305 (356) ...-.| +..+|++||.||.. .-+.|+|+||++..+.+++.......+..++. ...++.+ .+.|++ T Consensus 204 ~~v~av-v~~~~~vLL~~R~~-~~~~g~W~lPGG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 281 (341) T 2qjo_A 204 ITTDAV-VVQAGHVLMVRRQA-KPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSL 281 (341) T ss_dssp EEEEEE-EEETTEEEEEECCS-SSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCT T ss_pred EEEEEE-EEECCEEEEEECCC-CCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCCC T ss_conf 224499-99899999998569-9999949998104689949899998999998686354204888984015416888886 Q ss_pred -EEEEEEEEEEECCCC--------CCCCCCEEECHHHHHHCC--CCHHHHHHHHH Q ss_conf -599999999980776--------766781332278887479--98789999984 Q gi|254780479|r 306 -FTLTLFVWKTIVPQI--------VIIPDSTWHDAQNLANAA--LPTVMKKALSA 349 (356) Q Consensus 306 -~~L~i~v~~~~~~~~--------~~~~~~~Wv~~~el~~~~--LPs~~kKIL~a 349 (356) .+....+|.+.+... ....+.+|++.+++...+ +.-=+++||.. T Consensus 282 ~~~~v~~~~~~~~~~~~~~~~~~~dE~~~~~W~~~~el~~~~~~l~~DH~~il~~ 336 (341) T 2qjo_A 282 RGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQH 336 (341) T ss_dssp TSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTHHHHHHH T ss_pred CCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHCCCCCCCCCHHHHHHH T ss_conf 5249999999998379757778997156899976999212760336359999999 No 45 >3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.20A {Listeria innocua} Probab=97.43 E-value=0.0011 Score=44.88 Aligned_cols=98 Identities=15% Similarity=0.035 Sum_probs=56.2 Q ss_pred EEEEEECCCC------HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEEE------EEEEEEEEEEE Q ss_conf 0577645720------1320474421111346721588863010100002137--35899831------59999999998 Q gi|254780479|r 251 RILLRKRTNT------RLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFTH------FTLTLFVWKTI 316 (356) Q Consensus 251 kiLL~KRp~~------gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH------~~L~i~v~~~~ 316 (356) ++||.||... .+.+|+|.||++..+.++........+..++...... .....+++ ......+|.+. T Consensus 47 ~VLLikR~~~~~~~~~~~~~G~W~lPGG~ve~gEt~~eAa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (187) T 3i9x_A 47 HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAI 126 (187) T ss_dssp EEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEEEEE T ss_pred EEEEEECCCCCCCCCCCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEE T ss_conf 89999647864346878899979898403689979999999999998697642036776633543579952899999999 Q ss_pred CC--------CCCCCCCCEEECHHHHHHCCCCHHHHHHHH Q ss_conf 07--------767667813322788874799878999998 Q gi|254780479|r 317 VP--------QIVIIPDSTWHDAQNLANAALPTVMKKALS 348 (356) Q Consensus 317 ~~--------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~ 348 (356) +. ......+..|++++++.+++|.--+++||. T Consensus 127 ~~~~~~~~~~~~~E~~~~~W~~l~el~~~~LafdH~~ii~ 166 (187) T 3i9x_A 127 VPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLK 166 (187) T ss_dssp CCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHH T ss_pred EECCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCHHHHHH T ss_conf 8067676568987123679998999746887778999999 No 46 >1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Probab=97.40 E-value=0.0006 Score=46.76 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=55.1 Q ss_pred EEEEECCCEEEEEECCCC-HHHHCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCEECC-------CEEEEEE-----EEEE Q ss_conf 003413760577645720-13204744-21111346721588863010100002137-------3589983-----1599 Q gi|254780479|r 243 FIAITNDNRILLRKRTNT-RLLEGMDE-LPGSAWSSTKDGNIDTHSAPFTANWILCN-------TITHTFT-----HFTL 308 (356) Q Consensus 243 ~vii~~~~kiLL~KRp~~-gll~GLwE-FP~~e~~~~~~~~~~~~~~~~~~~~~~l~-------~ikH~fT-----H~~L 308 (356) .++++.+|++||+||... ..+.|+|. +|++..+.+++.......+...+...... .+.|..+ +... T Consensus 37 v~l~n~~g~lLl~kRs~~k~~~pg~w~~~~gG~ve~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~~~~ 116 (190) T 1hzt_A 37 SWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENE 116 (190) T ss_dssp EEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEE T ss_pred EEEEECCCEEEEEEECCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCEEEE T ss_conf 99997999799999289999999734224386665897799999999999729844324026676788640599844799 Q ss_pred EEEEEEEECCCC-----CCCCCCEEECHHHHHHC Q ss_conf 999999980776-----76678133227888747 Q gi|254780479|r 309 TLFVWKTIVPQI-----VIIPDSTWHDAQNLANA 337 (356) Q Consensus 309 ~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~~ 337 (356) ...+|....+.. ....+++|++++++.+. T Consensus 117 ~~~~~~~~~~~~~~~~~~Ev~e~~Wv~~~eL~~~ 150 (190) T 1hzt_A 117 VCPVFAARTTSALQINDDEVMDYQWCDLADVLHG 150 (190) T ss_dssp ECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHH T ss_pred EEEEEEEEECCCCCCCHHHHHEEEEECHHHHHHH T ss_conf 9999999827987799778415899549999999 No 47 >3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural genomics, structural genomics consortium; HET: FLC; 1.70A {Homo sapiens} Probab=97.33 E-value=0.0016 Score=43.88 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=57.5 Q ss_pred CEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC-----CEEEEEEE---EE- Q ss_conf 1123200034137605776457201320474421111346721588863010100002137-----35899831---59- Q gi|254780479|r 237 MRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN-----TITHTFTH---FT- 307 (356) Q Consensus 237 ~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~-----~ikH~fTH---~~- 307 (356) .+.....+|++.++++||.+|.. .-..|+|+||++..+.+++......++..++...... .+.+.... +. T Consensus 25 h~v~V~~vi~~~~~~~lLv~r~~-~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~ 103 (199) T 3h95_A 25 HQVGVAGAVFDESTRKILVVQDR-NKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGK 103 (199) T ss_dssp -CCEEEEEEEETTTTEEEEEEES-SSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-------- T ss_pred CCCEEEEEEEECCCCEEEEEEEC-CCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCCCCCE T ss_conf 84069999995799999999888-89999199983211189998999999999977724354359899986317887651 Q ss_pred -EEEEEEEEECC--C----CCCCCCCEEECHHHHHHCCCCHHHHHHHH Q ss_conf -99999999807--7----67667813322788874799878999998 Q gi|254780479|r 308 -LTLFVWKTIVP--Q----IVIIPDSTWHDAQNLANAALPTVMKKALS 348 (356) Q Consensus 308 -L~i~v~~~~~~--~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~ 348 (356) ....++.+... . .....+..|++++++.+.....++.+.+. T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~p~~~~i~ 151 (199) T 3h95_A 104 SDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVA 151 (199) T ss_dssp -CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHH T ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHHH T ss_conf 679999995277776678960568999986999756867885899999 No 48 >1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Probab=97.32 E-value=0.0022 Score=42.86 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=58.5 Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC--------EECCCEEEEEEE-------- Q ss_conf 0003413760577645720132047442111134672158886301010000--------213735899831-------- Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW--------ILCNTITHTFTH-------- 305 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~--------~~l~~ikH~fTH-------- 305 (356) ..+|.+.+|++||.||... -+.|+|+||++..+.+++......++...+.. .....+.|.+.. T Consensus 22 ~~vi~~~~~~vLL~~R~~~-~~~g~W~lPgG~ve~gEt~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (160) T 1rya_A 22 DFIVENSRGEFLLGKRTNR-PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFT 100 (160) T ss_dssp EEEEECTTSCEEEEEECSS-SSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSC T ss_pred EEEEEECCCEEEEEEECCC-CCCCCEECCEEECCCCCCHHHHHHHHHHHHHCCCEEECCEEEEEEEEEECCCCCCCCCCC T ss_conf 9999969990999994799-999979997740139999788888999998698333021057889988656766778764 Q ss_pred EEEEEEEEEEECCC------CCCCCCCEEECHHHHHHCCC-CHHHHH Q ss_conf 59999999998077------67667813322788874799-878999 Q gi|254780479|r 306 FTLTLFVWKTIVPQ------IVIIPDSTWHDAQNLANAAL-PTVMKK 345 (356) Q Consensus 306 ~~L~i~v~~~~~~~------~~~~~~~~Wv~~~el~~~~L-Ps~~kK 345 (356) .+.-..+|.+.... .....+.+|++.+++.+.+. +..+|. T Consensus 101 ~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~r~ 147 (160) T 1rya_A 101 THYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRA 147 (160) T ss_dssp EEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHG T ss_pred EEEEEEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHH T ss_conf 59999999999668765589522568899889995428667689999 No 49 >1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Probab=97.31 E-value=0.0013 Score=44.40 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=56.3 Q ss_pred EEEEEEECCCEEEEEECCCC---HHHHCCCCCCCCCCCCCCCHHHHHHCCCC------CCCCEECCCEEEEEEE-EEEEE Q ss_conf 20003413760577645720---13204744211113467215888630101------0000213735899831-59999 Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNT---RLLEGMDELPGSAWSSTKDGNIDTHSAPF------TANWILCNTITHTFTH-FTLTL 310 (356) Q Consensus 241 ~~~vii~~~~kiLL~KRp~~---gll~GLwEFP~~e~~~~~~~~~~~~~~~~------~~~~~~l~~ikH~fTH-~~L~i 310 (356) ...++++.+|++||.||... ....|.|+||++..+.+++.......+.. ......++.+.+.+.. ..... T Consensus 16 a~~iv~~~~g~vLLv~r~~~~~~~~~~g~W~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~ 95 (159) T 1sjy_A 16 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILR 95 (159) T ss_dssp EEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSCEEEE T ss_pred EEEEEEECCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCEEEE T ss_conf 99999968998999998057888888994999812157997999999999999849341565899999788699989999 Q ss_pred EEEEEECC--CC------CCCCCCEEECHHHHHHC Q ss_conf 99999807--76------76678133227888747 Q gi|254780479|r 311 FVWKTIVP--QI------VIIPDSTWHDAQNLANA 337 (356) Q Consensus 311 ~v~~~~~~--~~------~~~~~~~Wv~~~el~~~ 337 (356) ++|.+... .. ....+.+|++.+++.++ T Consensus 96 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~e~~~l 130 (159) T 1sjy_A 96 HVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQL 130 (159) T ss_dssp EEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHH T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 99999984785457799852688999869998641 No 50 >3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} Probab=97.27 E-value=0.0004 Score=48.02 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=57.6 Q ss_pred EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECC-----CEEEEEEE--- Q ss_conf 3200034137605776457201320474421111346721588863010100002------137-----35899831--- Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCN-----TITHTFTH--- 305 (356) Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~-----~ikH~fTH--- 305 (356) ....++++.++.+|+.+|. .|.|.||++..+.++.......++..++... .++ ...+.+++ T Consensus 23 ~v~~vv~~~~~~lLl~~~~-----~~~W~lPgG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 97 (153) T 3eds_A 23 SVAAVIKNEQGEILFQYPG-----GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYSNGDE 97 (153) T ss_dssp EEEEEEBCTTCCEEEECC--------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECTTSCE T ss_pred EEEEEEEECCCEEEEEEEC-----CCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCEEEECCCCCE T ss_conf 8999999899899999939-----99399980421699698999899999975914674069999813536563689976 Q ss_pred EEEEEEEEEEECC------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH Q ss_conf 5999999999807------7676678133227888747998789999984 Q gi|254780479|r 306 FTLTLFVWKTIVP------QIVIIPDSTWHDAQNLANAALPTVMKKALSA 349 (356) Q Consensus 306 ~~L~i~v~~~~~~------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a 349 (356) ......+|.+... ......+.+|++.+++.++.+|-+.+.+|+- T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~~~~~fleg 147 (153) T 3eds_A 98 VEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPLALPYPDKIFLEG 147 (153) T ss_dssp EEEEEEEEEEEEEEECCC-------CEEEECGGGCCCBSSCCCGGGCC-- T ss_pred EEEEEEEEEEEECCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCEEEEC T ss_conf 89999999999668976689971799999879997358999998689957 No 51 >3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.27A {Streptococcus suis} Probab=97.27 E-value=0.00067 Score=46.43 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=50.3 Q ss_pred EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEE-----EEEEEEEEEEE Q ss_conf 003413760577645720132047442111134672158886301010000------2137358-----99831599999 Q gi|254780479|r 243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTIT-----HTFTHFTLTLF 311 (356) Q Consensus 243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ik-----H~fTH~~L~i~ 311 (356) .+|+ +++++||.+|. .|.|.||++..+.++........+...+.. ..++.+. +....+.+... T Consensus 75 avI~-~d~kiLLv~r~-----~G~W~lPGG~ve~gEs~~eaa~REv~EEtGl~v~~~~~l~v~~~~~~~~~~~~~~~~~~ 148 (206) T 3o8s_A 75 AAIF-QEDKILLVQEN-----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKV 148 (206) T ss_dssp EEEE-ETTEEEEEECT-----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC-----CEEEE T ss_pred EEEE-ECCEEEEEEEC-----CCCEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEEEEE T ss_conf 9999-89999999908-----99789988236699899999999999987884142069999830113689985289999 Q ss_pred EEEEECC-----CCCCCCCCEEECHHHHHHCCCCHHHHH Q ss_conf 9999807-----767667813322788874799878999 Q gi|254780479|r 312 VWKTIVP-----QIVIIPDSTWHDAQNLANAALPTVMKK 345 (356) Q Consensus 312 v~~~~~~-----~~~~~~~~~Wv~~~el~~~~LPs~~kK 345 (356) +|.+... ......+..|++.++|..+.+...... T Consensus 149 ~~~~~~~~~~~~~~~E~~e~~Wf~~deLp~L~~~~~~~~ 187 (206) T 3o8s_A 149 FILCRLLGGEFQPNSETVASGFFSLDDLPPLYLGKNTAE 187 (206) T ss_dssp EEEEEEEEECCCCCSSCSEEEEECTTSCCCBCTTTCCHH T ss_pred EEEEEECCCCCCCCCHHHEEEEEEHHHCCCCCCCCCHHH T ss_conf 999996589615982010379984998848765847699 No 52 >1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Probab=97.08 E-value=0.0024 Score=42.53 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=58.2 Q ss_pred EEEEECCCEEEEEECCCC-HHHHCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCEECC--CEEE--EEE----EEEEEEEE Q ss_conf 003413760577645720-1320474421-111346721588863010100002137--3589--983----15999999 Q gi|254780479|r 243 FIAITNDNRILLRKRTNT-RLLEGMDELP-GSAWSSTKDGNIDTHSAPFTANWILCN--TITH--TFT----HFTLTLFV 312 (356) Q Consensus 243 ~vii~~~~kiLL~KRp~~-gll~GLwEFP-~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH--~fT----H~~L~i~v 312 (356) .++.+.+|++||.||+.. ..+.|+|++| ++..+.++........+...+...... .+.. .++ .....+.+ T Consensus 39 ~~v~~~~g~~Ll~~Rs~~k~~~pg~w~~~~GG~ve~gEt~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (171) T 1q27_A 39 AFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCV 118 (171) T ss_dssp EEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCSSEEEE T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEEE T ss_conf 99985999799998189998999863468998777897989999799889759741026789999964778752589999 Q ss_pred EEEECCC-----CCCCCCCEEECHHHHHHC-----CCCHHHHHHH Q ss_conf 9998077-----676678133227888747-----9987899999 Q gi|254780479|r 313 WKTIVPQ-----IVIIPDSTWHDAQNLANA-----ALPTVMKKAL 347 (356) Q Consensus 313 ~~~~~~~-----~~~~~~~~Wv~~~el~~~-----~LPs~~kKIL 347 (356) |.+.... .....+..|++.+++... ..|.....++ T Consensus 119 ~~~~~~~~~~~~~~Ev~~~~W~~~eEl~~~~~~ge~~~~~l~~~l 163 (171) T 1q27_A 119 YELRSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELV 163 (171) T ss_dssp EEEECCCCCCSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHH T ss_pred EEEECCCCCCCCHHHEEEEEEEEHHHHHHHHHCCCCCCHHHHHHH T ss_conf 999438886599468048899229999989877998816899999 No 53 >3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Probab=97.06 E-value=0.0028 Score=42.07 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=56.4 Q ss_pred EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEE------CCCE------------ Q ss_conf 1232000341376057764572013204744211113467215888630101000021------3735------------ Q gi|254780479|r 238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWIL------CNTI------------ 299 (356) Q Consensus 238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~------l~~i------------ 299 (356) ....++|+-+.++++||.+++. .|.|.||++..+.++.......++..++.... .+.+ T Consensus 46 ~t~~a~i~~~~~~~vLLv~~~~----~~~W~lPGG~ve~gEs~~~aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~ 121 (197) T 3fcm_A 46 LTSSAFAVNKERNKFLMIHHNI----YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIK 121 (197) T ss_dssp EEEEEEEECTTSCEEEEEEETT----TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEE T ss_pred EEEEEEEEECCCCEEEEEEECC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC T ss_conf 8899999988999899998679----992779844378996999999999999979985223111210013302456444 Q ss_pred --EEEEEEEEEEEEEEEEEC-C-----CCCCCCCCEEECHHHHHHCCCCH----HHHHHHHH Q ss_conf --899831599999999980-7-----76766781332278887479987----89999984 Q gi|254780479|r 300 --THTFTHFTLTLFVWKTIV-P-----QIVIIPDSTWHDAQNLANAALPT----VMKKALSA 349 (356) Q Consensus 300 --kH~fTH~~L~i~v~~~~~-~-----~~~~~~~~~Wv~~~el~~~~LPs----~~kKIL~a 349 (356) ...-.|+.+.+..+.... . ......+++|++.+++.++.... ..+|+++. T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~kli~k 183 (197) T 3fcm_A 122 RGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINK 183 (197) T ss_dssp TTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHH T ss_pred CCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 46556643566667887431145566898640479997799997564987899999999999 No 54 >2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Probab=96.90 E-value=0.0043 Score=40.78 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=49.5 Q ss_pred EEEE-CCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCE-EEEEEEEEEEEEEEEE Q ss_conf 0341-37605776457201320474421111346721588863010100002------13735-8998315999999999 Q gi|254780479|r 244 IAIT-NDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTI-THTFTHFTLTLFVWKT 315 (356) Q Consensus 244 vii~-~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~i-kH~fTH~~L~i~v~~~ 315 (356) ++++ .++++||.+|... |.|+||++..+.+++.......+...+... ....+ .+.+......+.++.. T Consensus 10 ii~~~~~~~vLLv~~~~~----~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (146) T 2jvb_A 10 AIFNENLSKILLVQGTES----DSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISG 85 (146) T ss_dssp EEBCTTSSEEEEECCSSS----SCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEEEECC T ss_pred EEEECCCCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCEEEEEEEEE T ss_conf 999899999999994399----9399981143699799999999999997953030261205772365551799999999 Q ss_pred ECC-------CCCCCCCCEEECHHHHHHCC Q ss_conf 807-------76766781332278887479 Q gi|254780479|r 316 IVP-------QIVIIPDSTWHDAQNLANAA 338 (356) Q Consensus 316 ~~~-------~~~~~~~~~Wv~~~el~~~~ 338 (356) ... ......+..|++.+++.+.. T Consensus 86 ~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (146) T 2jvb_A 86 VSEVFNFKPQVRNEIDKIEWFDFKKISKTM 115 (146) T ss_dssp CCSSSCCCCCCSSSCCCEEEEEHHHHHTGG T ss_pred ECCCCCCCCCCCCCEEEEEEEEHHHHHHHH T ss_conf 625644644598516899998699976442 No 55 >1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Probab=96.86 E-value=0.011 Score=37.91 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=54.1 Q ss_pred CCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE----EEEEEEEEEEEC Q ss_conf 3760577645720132047442111134672158886301010000------213735899831----599999999980 Q gi|254780479|r 248 NDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH----FTLTLFVWKTIV 317 (356) Q Consensus 248 ~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH----~~L~i~v~~~~~ 317 (356) .+.++||.+|... .|.|.||++..+.+++.......+..++.. .......+.+.+ .......|.+.. T Consensus 16 ~~~~vLl~~r~~~---~g~W~~PgG~~e~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (138) T 1ktg_A 16 GKIEFLLLQASYP---PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKL 92 (138) T ss_dssp TEEEEEEEEESST---TCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEE T ss_pred CCEEEEEEEECCC---CCCEECCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEEEEE T ss_conf 9779999997389---9979997236827999999999998887286512567765543345306999369999999996 Q ss_pred CCC------CCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf 776------766781332278887479987899999844 Q gi|254780479|r 318 PQI------VIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 318 ~~~------~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) ... ....++.|++++++.+.....-++++|+.. T Consensus 93 ~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~ 131 (138) T 1ktg_A 93 NNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKF 131 (138) T ss_dssp CSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHH T ss_pred CCCCCCCCCCCEEEEEEEEHHHHHHHCCCHHHHHHHHHH T ss_conf 688875898002578997699987662997799999999 No 56 >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Probab=96.81 E-value=0.0058 Score=39.83 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=55.5 Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECC--CEEEEEEEE------E Q ss_conf 00034137605776457201320474421111346721588863010100002------137--358998315------9 Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCN--TITHTFTHF------T 307 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~--~ikH~fTH~------~ 307 (356) +..++..+|++||.+|... -..|+|.+|++..+.+++.......+..++... ..+ ...+.|+|. + T Consensus 211 ~~~vv~~~~~VLLv~R~~~-p~~g~W~LPGG~ve~gEs~~~aa~REl~EETGi~~~~~~~~~~~~~~~~~~~~~r~~~g~ 289 (352) T 2qjt_B 211 VDALVIVNDHILMVQRKAH-PGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGR 289 (352) T ss_dssp EEEEEEETTEEEEEEESSS-SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSE T ss_pred EEEEEEECCEEEEEEECCC-CCCCEEECCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCE T ss_conf 6799998999999996689-999838998020079979899999999999778641104788886312125777888843 Q ss_pred EEEEEEEEECC------CCC---CCCCCEEECHHHHHHCC---CCHHHHHHHHH Q ss_conf 99999999807------767---66781332278887479---98789999984 Q gi|254780479|r 308 LTLFVWKTIVP------QIV---IIPDSTWHDAQNLANAA---LPTVMKKALSA 349 (356) Q Consensus 308 L~i~v~~~~~~------~~~---~~~~~~Wv~~~el~~~~---LPs~~kKIL~a 349 (356) ...+.+.+... ... ...+.+|++++++.... +.-=+.+||+. T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~dE~~~~~Wvpl~el~~~~~~~l~~Dh~~Il~~ 343 (352) T 2qjt_B 290 TISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITI 343 (352) T ss_dssp EEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHH T ss_pred EEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHHHCCCCHHHHHHHHHHH T ss_conf 999999999853677777279860327999779995533253014539999999 No 57 >3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Probab=96.64 E-value=0.0031 Score=41.79 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=58.7 Q ss_pred EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECC-------------- Q ss_conf 123200034137605776457201320474421111346721588863010100002------137-------------- Q gi|254780479|r 238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCN-------------- 297 (356) Q Consensus 238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~-------------- 297 (356) |...+.+++.+++++||.+|+.. |.|.||++..+.+++.......+...+... .+. T Consensus 5 rh~~~~v~i~~~~kvLL~~~~~~----g~W~~PGG~ie~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 80 (159) T 3f6a_A 5 RHFTVSVFIVCKDKVLLHLHKKA----KKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKL 80 (159) T ss_dssp SCEEEEEEEEETTEEEEEECSSS----CCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEE T ss_pred CEEEEEEEEEECCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEE T ss_conf 23899999998999999998189----90899814158889999999999999869951344688888510014677403 Q ss_pred --CEEEEE------EEEEEEEEEEEEECC------CCCCCCCCEEECHHHHHHCC-CCH----HHHHHHHHCC Q ss_conf --358998------315999999999807------76766781332278887479-987----8999998448 Q gi|254780479|r 298 --TITHTF------THFTLTLFVWKTIVP------QIVIIPDSTWHDAQNLANAA-LPT----VMKKALSAGG 351 (356) Q Consensus 298 --~ikH~f------TH~~L~i~v~~~~~~------~~~~~~~~~Wv~~~el~~~~-LPs----~~kKIL~alg 351 (356) ...|.. .|..+ ..+|.+... ......+.+|++.+++.+.+ ++. ..+++|+.+- T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~al~~le 152 (159) T 3f6a_A 81 LINPIHTILGDVSPNHSHI-DFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILVMATEALDLLE 152 (159) T ss_dssp ECCCSEEEEECSSSSSCEE-EEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHHHHCC T ss_pred EEEEEEEECCCCCCCEEEE-EEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHC T ss_conf 4553231104676546999-99999980588755898724788997599974074588769999999998853 No 58 >3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Probab=96.59 E-value=0.012 Score=37.53 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=58.3 Q ss_pred EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCC--CCCHHHHHHCCCCCCCCEECC--CEEEEEEE-----EEEEE-EE Q ss_conf 0034137605776457201320474421111346--721588863010100002137--35899831-----59999-99 Q gi|254780479|r 243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSS--TKDGNIDTHSAPFTANWILCN--TITHTFTH-----FTLTL-FV 312 (356) Q Consensus 243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~--~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH-----~~L~i-~v 312 (356) +-+.+.+.+|||.||... -..|.|.||++..+. +++...........+...... ..-++|++ ....+ .+ T Consensus 30 f~~~~~~lkVLLvkR~~~-P~~G~WaLPGG~ve~~~gEsl~eAA~Rel~EETGl~~~~leql~~f~~~~Rdp~~~~isv~ 108 (240) T 3gz5_A 30 FTYHDQQLKVLLVQRSNH-PFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWSVTVC 108 (240) T ss_dssp EEEETTEEEEEEEECCSS-SSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSSTTSCEEEEE T ss_pred EEEECCCCEEEEEECCCC-CCCCCEECCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEE T ss_conf 998789868999974689-9999788994577788897999999999987507876402588897654358998305899 Q ss_pred EEEECC------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH Q ss_conf 999807------7676678133227888747998789999984 Q gi|254780479|r 313 WKTIVP------QIVIIPDSTWHDAQNLANAALPTVMKKALSA 349 (356) Q Consensus 313 ~~~~~~------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a 349 (356) |.+.++ ......+..|+..+++....+.--++.||+. T Consensus 109 y~~l~~~~~~~~~~~e~~~~~w~~~~d~~~~~lafdh~~II~~ 151 (240) T 3gz5_A 109 YTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQ 151 (240) T ss_dssp EEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHH T ss_pred EEEEECCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCHHHHHHH T ss_conf 9998457765667654353399848877678776369999999 No 59 >2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Probab=96.58 E-value=0.004 Score=41.01 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=50.9 Q ss_pred EEEEECC-CEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------EC-CCEEEEEEEEEEEEEEEE Q ss_conf 0034137-605776457201320474421111346721588863010100002------13-735899831599999999 Q gi|254780479|r 243 FIAITND-NRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LC-NTITHTFTHFTLTLFVWK 314 (356) Q Consensus 243 ~vii~~~-~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l-~~ikH~fTH~~L~i~v~~ 314 (356) +++++.+ +++||.|+..+ .|-|+||+|..+.+++......++..++... .. ..+.+.+......+.++. T Consensus 106 aIiln~~~~kvLLVk~~~~---~~~W~fPgGkie~gEs~~~aAiREv~EETGidi~~~~~~~~~~~~~~~~~~~~~y~~~ 182 (271) T 2a6t_A 106 AIMLDMSMQQCVLVKGWKA---SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIP 182 (271) T ss_dssp EEEBCSSSSEEEEEEESST---TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEEEEEEEEC T ss_pred EEEEECCCCEEEEEEECCC---CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEE T ss_conf 9999789998999996189---9908898111289989999999999999687220102022046640468568999999 Q ss_pred EECC-C------CCCCCCCEEECHHHHHHC Q ss_conf 9807-7------676678133227888747 Q gi|254780479|r 315 TIVP-Q------IVIIPDSTWHDAQNLANA 337 (356) Q Consensus 315 ~~~~-~------~~~~~~~~Wv~~~el~~~ 337 (356) .... . ..+.++..|++.++|.++ T Consensus 183 ~v~~~~~~~p~~~~EI~eikW~~iddLp~~ 212 (271) T 2a6t_A 183 GISLDTRFESRTRKEISKIEWHNLMDLPTF 212 (271) T ss_dssp CCCTTCCCC------EEEEEEEEGGGSTTC T ss_pred EECCCCCCCCCCCCCCEEEEEEEHHHHHHH T ss_conf 955787767468403469999759994657 No 60 >2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Probab=96.54 E-value=0.0056 Score=39.93 Aligned_cols=102 Identities=9% Similarity=0.131 Sum_probs=52.7 Q ss_pred EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEE----EEEEEEEEEEEE-CC Q ss_conf 4137605776457201320474421111346721588863010100002137--3589983----159999999998-07 Q gi|254780479|r 246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFT----HFTLTLFVWKTI-VP 318 (356) Q Consensus 246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fT----H~~L~i~v~~~~-~~ 318 (356) .++++++||.+|... .|.|+||++..+.+++.......+..++...... .+...|. .....+.++.+. .. T Consensus 50 ~~~~~~vLlv~~~~~---~~~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~ 126 (194) T 2fvv_A 50 SESEEEVLLVSSSRH---PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVL 126 (194) T ss_dssp STTCCEEEEEECSSC---TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEC T ss_pred ECCCCEEEEEEECCC---CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEC T ss_conf 789988999994179---99098974005799799999999999986973403169999867899857999999998704 Q ss_pred C-----CCCCCCCEEECHHHHHHC-CCCHH-HHHHHHHC Q ss_conf 7-----676678133227888747-99878-99999844 Q gi|254780479|r 319 Q-----IVIIPDSTWHDAQNLANA-ALPTV-MKKALSAG 350 (356) Q Consensus 319 ~-----~~~~~~~~Wv~~~el~~~-~LPs~-~kKIL~al 350 (356) . .....+.+|++.+|+.++ ....+ +..+++.+ T Consensus 127 ~~~~~~~~E~~~~~W~~~~Ea~~ll~~~~p~~~~~l~~L 165 (194) T 2fvv_A 127 EDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQASYFETL 165 (194) T ss_dssp SSCHHHHHHCCCEEEEEHHHHHHHHTTTCHHHHHHTCC- T ss_pred CCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHHH T ss_conf 788899873448899529999998756759999999999 No 61 >1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Probab=96.52 E-value=0.011 Score=37.93 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=53.7 Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEE------EEEEEEEEEE Q ss_conf 2000341376057764572013204744211113467215888630101000021373589983------1599999999 Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFT------HFTLTLFVWK 314 (356) Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fT------H~~L~i~v~~ 314 (356) .+.++...+|++||.++-..++-.++||||.+..+.+++.......+..++.... ..+.|.++ ..+-.+++|. T Consensus 36 av~vl~~~~~~ilLvkq~R~~~~~~~~elPaG~ve~gEs~~~aa~REl~EEtG~~-~~~~~l~~~~~~~g~~~~~~~~f~ 114 (170) T 1v8y_A 36 AVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS-GDLTYLFSYFVSPGFTDEKTHVFL 114 (170) T ss_dssp EEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEE-EEEEEEEEEESCTTTBCCEEEEEE T ss_pred EEEEEEEECCEEEEEEEEECCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCE-EEEEEEEEECCCCCCCCCEEEEEE T ss_conf 9999999999999999166588994599975881899799999999987876988-799998776258984640899999 Q ss_pred EEC----CC---CCCCCCCEEECHHHHHHC Q ss_conf 980----77---676678133227888747 Q gi|254780479|r 315 TIV----PQ---IVIIPDSTWHDAQNLANA 337 (356) Q Consensus 315 ~~~----~~---~~~~~~~~Wv~~~el~~~ 337 (356) +.. .. .....+..|++.+++.++ T Consensus 115 a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~ 144 (170) T 1v8y_A 115 AENLKEVEAHPDEDEAIEVVWMRPEEALER 144 (170) T ss_dssp EEEEEECC--------CEEEEECHHHHHHH T ss_pred EEECCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 966731367999994589999999999999 No 62 >2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA; 1.80A {Aquifex aeolicus VF5} Probab=96.52 E-value=0.0078 Score=38.93 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=51.2 Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEEE------EEEEEEEEEEECCCC-- Q ss_conf 05776457201320474421111346721588863010100002137--35899831------599999999980776-- Q gi|254780479|r 251 RILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFTH------FTLTLFVWKTIVPQI-- 320 (356) Q Consensus 251 kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH------~~L~i~v~~~~~~~~-- 320 (356) .+||.||... .+.|+||++..+.++.......++..++...... .+-++|++ ...-...|.+..... T Consensus 26 ~iLL~~r~~~---p~~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139) T 2yyh_A 26 GIVLIERKYP---PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQGEPK 102 (139) T ss_dssp EEEEEEECSS---SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSCTTSCEEEEEEEEEEESCCC T ss_pred EEEEEEECCC---CCCEECCEECEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCC T ss_conf 9999996689---9969896113318989899999998774184278879999983567765169999999992589632 Q ss_pred --CCCCCCEEECHHHHHHCCCCHHHHHHHH Q ss_conf --7667813322788874799878999998 Q gi|254780479|r 321 --VIIPDSTWHDAQNLANAALPTVMKKALS 348 (356) Q Consensus 321 --~~~~~~~Wv~~~el~~~~LPs~~kKIL~ 348 (356) ....+.+|++.+++....|.-.++++|. T Consensus 103 ~~~E~~~~~W~~~~elp~~~l~fdh~~ii~ 132 (139) T 2yyh_A 103 AGSDAKKVKVYRLEEIPLDKLVFDHKKIIL 132 (139) T ss_dssp CCTTEEEEEEECTTSCCGGGBCTTHHHHHH T ss_pred CCCCHHEEEEEEHHHCCCCCCCCCHHHHHH T ss_conf 898111589998999877877838999999 No 63 >1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Probab=96.20 E-value=0.0036 Score=41.26 Aligned_cols=103 Identities=13% Similarity=0.021 Sum_probs=54.7 Q ss_pred EEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCC------CCCCEECCCEEEEE------EEEEEEEE Q ss_conf 0341376057764572013204744211113467215888630101------00002137358998------31599999 Q gi|254780479|r 244 IAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPF------TANWILCNTITHTF------THFTLTLF 311 (356) Q Consensus 244 vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~------~~~~~~l~~ikH~f------TH~~L~i~ 311 (356) .+.+.+.++||.||..+ .+.|.||++..+.+++......+... .........+...+ ++...... T Consensus 23 ~~~~~~~~~LLi~~~~~---~~~W~~PgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 99 (153) T 1xsa_A 23 KVDNNAIEFLLLQASDG---IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYW 99 (153) T ss_dssp CSSSCSEEEEEEEETTT---TCCEECSEEECCSSSCHHHHHHHHHHHHTCCCGGGEEECCSSCCEEECCTTTCCCEEEEE T ss_pred CEECCCCEEEEEEECCC---CCCEECCEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEEE T ss_conf 25089868999996399---995899733134998999999999998755221035662231002210479961899999 Q ss_pred EEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHHHHHHH Q ss_conf 99998077-----676678133227888747998789999984 Q gi|254780479|r 312 VWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMKKALSA 349 (356) Q Consensus 312 v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a 349 (356) ++...... .....++.|++.+++.+...+--++.+|.. T Consensus 100 ~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~il~~ 142 (153) T 1xsa_A 100 LAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQE 142 (153) T ss_dssp EEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHH T ss_pred EEEEECCCCCCCCCCCCEEEEEEEHHHHHHHCCCHHHHHHHHH T ss_conf 9999526675389864106899649999987299889999999 No 64 >2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Probab=96.12 E-value=0.053 Score=33.07 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=29.0 Q ss_pred CCCEEEEEEEEEECCCEEEEEECCCC-HHHHCCCCCCCCCC Q ss_conf 22112320003413760577645720-13204744211113 Q gi|254780479|r 235 RPMRTGAVFIAITNDNRILLRKRTNT-RLLEGMDELPGSAW 274 (356) Q Consensus 235 k~~r~~~~~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~ 274 (356) ...+.+.++ +.+.+|++||+||+.. ..+.|+|..+.+.. T Consensus 57 l~HRa~~v~-v~n~~g~lLLQkRs~~K~~~Pg~Wd~s~gGH 96 (235) T 2dho_A 57 LLHRAFSVF-LFNTENKLLLQQRSDAKITFPGCFTNTCCSH 96 (235) T ss_dssp CCEEEEEEE-EECTTCCEEEEEECTTCSSSTTCEESSEEEC T ss_pred CEEEEEEEE-EEECCCCEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 648899999-9958984899976798878998501256764 No 65 >2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6 Probab=95.97 E-value=0.024 Score=35.45 Aligned_cols=99 Identities=10% Similarity=0.054 Sum_probs=57.6 Q ss_pred EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEEE-------EEEEEEEEEEE Q ss_conf 4137605776457201320474421111346721588863010100002137--35899831-------59999999998 Q gi|254780479|r 246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFTH-------FTLTLFVWKTI 316 (356) Q Consensus 246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH-------~~L~i~v~~~~ 316 (356) .+.+.++||.||... -+.|.|.+|++..+.+++.......+..++...... ..-++|++ ..+.+ +|.+. T Consensus 24 ~~~~l~VLLvkR~~~-P~~g~WaLPGG~ve~gEs~~~Aa~Rel~EEtGl~~~~leql~~~~~~~Rdp~~~~isv-~y~al 101 (226) T 2fb1_A 24 NEGEISLLLLKRNFE-PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVVSI-AYYAL 101 (226) T ss_dssp ETTEEEEEEEECSSS-SSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSSSSCEEEE-EEEEE T ss_pred ECCCCEEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEE-EEEEE T ss_conf 799658999984689-8999787980047799898899999999874666652389645258767787734789-99999 Q ss_pred CCCCC------CCCCCEEECHHHHHHCCCCHHHHHHHH Q ss_conf 07767------667813322788874799878999998 Q gi|254780479|r 317 VPQIV------IIPDSTWHDAQNLANAALPTVMKKALS 348 (356) Q Consensus 317 ~~~~~------~~~~~~Wv~~~el~~~~LPs~~kKIL~ 348 (356) ++... ...+..|++.+++.++++. +..|++ T Consensus 102 v~~~~~~~~~~e~~~~~w~~~~~lp~LafD--H~~ii~ 137 (226) T 2fb1_A 102 ININEYDRELVQKHNAYWVNINELPALIFD--HPEMVD 137 (226) T ss_dssp CCTTSSCHHHHHHTTEEEEETTSCCCBSTT--HHHHHH T ss_pred ECCCCCCCCCCCCCCCEEECHHHHHHHHHH--HHHHHH T ss_conf 648876666531001346445652000002--699999 No 66 >3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima} Probab=95.67 E-value=0.075 Score=32.03 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=49.7 Q ss_pred EEEEEEEECCCEEEEEECCCC---HHHHCCCCCC-CCCCCCC------CC------HHHHHHCCCCCCCCEECCCEEEEE Q ss_conf 320003413760577645720---1320474421-1113467------21------588863010100002137358998 Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNT---RLLEGMDELP-GSAWSST------KD------GNIDTHSAPFTANWILCNTITHTF 303 (356) Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~---gll~GLwEFP-~~e~~~~------~~------~~~~~~~~~~~~~~~~l~~ikH~f 303 (356) ...+++++.+|++|+.+|..+ +.|.|+|++| ++-.+.. +. .++.++..........++.+.... T Consensus 69 ~ipyvv~~~~~~~ll~~R~~~~ge~rl~~~~sigvGGHv~~gd~~~~~Es~~~Aa~REl~EEtGI~~~~~~~lG~i~~~~ 148 (211) T 3e57_A 69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSST 148 (211) T ss_dssp EEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCS T ss_pred CEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCC T ss_conf 24799996599999999568886554578500466725567766789958999999999898594067727999992688 Q ss_pred E---EEEEEEEEEEEECC----CCCCCCCCEEECHHHHHHCC Q ss_conf 3---15999999999807----76766781332278887479 Q gi|254780479|r 304 T---HFTLTLFVWKTIVP----QIVIIPDSTWHDAQNLANAA 338 (356) Q Consensus 304 T---H~~L~i~v~~~~~~----~~~~~~~~~Wv~~~el~~~~ 338 (356) + ...+ ..+|.+... +.....+..|+++++|.++. T Consensus 149 ~~~~~vh~-~vvf~~~~~~~~~~e~E~~e~~Wv~~eEL~~~~ 189 (211) T 3e57_A 149 TEVSRVHL-GALFLGRGKFFSVKEKDLFEWELIKLEELEKFS 189 (211) T ss_dssp SHHHHTEE-EEEEEEEEEEEEESCTTTCEEEEEEHHHHHHHG T ss_pred CCCCEEEE-EEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHH T ss_conf 99876999-999984168888895412278998799974547 No 67 >2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Probab=95.14 E-value=0.043 Score=33.72 Aligned_cols=90 Identities=8% Similarity=0.082 Sum_probs=48.7 Q ss_pred EEEECCCEEEEEE--CCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC------CCCEECCCEEEE--EEEEEEEEEEE Q ss_conf 0341376057764--5720132047442111134672158886301010------000213735899--83159999999 Q gi|254780479|r 244 IAITNDNRILLRK--RTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT------ANWILCNTITHT--FTHFTLTLFVW 313 (356) Q Consensus 244 vii~~~~kiLL~K--Rp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~------~~~~~l~~ikH~--fTH~~L~i~v~ 313 (356) +.++.+|+++|.+ |...+-| .||||.+..+.+++.......+... ..+..++.+... ++... +++| T Consensus 11 lp~~~~~~vlLvrq~R~~~~~~--~~e~P~G~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~g~~~~~--~~~~ 86 (145) T 2w4e_A 11 LPVTAQGEAVLIRQFRYPLRAT--ITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVV--FYPL 86 (145) T ss_dssp EEEETTSEEEEEEEEETTTTEE--EEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCE--EEEE T ss_pred EEECCCCEEEEEEEEECCCCCC--EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEE--EEEE T ss_conf 9986999899998077489994--58666446899849999999998874388677369999996456307649--9999 Q ss_pred EEEC--CC-----CCCCCCCEEECHHHHHHC Q ss_conf 9980--77-----676678133227888747 Q gi|254780479|r 314 KTIV--PQ-----IVIIPDSTWHDAQNLANA 337 (356) Q Consensus 314 ~~~~--~~-----~~~~~~~~Wv~~~el~~~ 337 (356) .+.. .. .....+..|++.+++.++ T Consensus 87 ~a~~~~~~~~~~~~~E~~~~~~~~~~e~~~~ 117 (145) T 2w4e_A 87 LALGVTLGAAQLEDTETIERVVLPLAEVYRM 117 (145) T ss_dssp EEEEEEEC--------CEEEEEEEHHHHHHH T ss_pred EEEECCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 9965305786899984699999889999999 No 68 >3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II(PSI II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis ATCC15703} Probab=95.13 E-value=0.059 Score=32.77 Aligned_cols=102 Identities=9% Similarity=0.014 Sum_probs=54.1 Q ss_pred EEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEEE------------ Q ss_conf 3413760577645720132047442111134672158886301010000------2137358998315------------ Q gi|254780479|r 245 AITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTHF------------ 306 (356) Q Consensus 245 ii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH~------------ 306 (356) ....+.++||.+|+..| -|.||.+..+.++........+..++.. ..++.+.+.|++- T Consensus 33 ~~~~~~eVlLv~r~~~~----~W~lPkG~ie~GE~~~~aA~REv~EETGl~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~ 108 (364) T 3fjy_A 33 EQLDSIEVCIVHRPKYD----DWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTA 108 (364) T ss_dssp HHHTTEEEEEEEETTTT----EEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC------------------ T ss_pred CCCCCEEEEEEECCCCC----CEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCCC T ss_conf 26897089999248999----87798522699979999999999998698310024001498871677734663136777 Q ss_pred -EEEEEEEEEECC------------------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHHC Q ss_conf -999999999807------------------76766781332278887479987899999844 Q gi|254780479|r 307 -TLTLFVWKTIVP------------------QIVIIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356) Q Consensus 307 -~L~i~v~~~~~~------------------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356) .-.+..|..... ...+..+.+|++.++..+.-...-.+++|..+ T Consensus 109 ~~k~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~EA~~~lt~~~dr~vl~~~ 171 (364) T 3fjy_A 109 DTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVF 171 (364) T ss_dssp ---CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHH T ss_pred CCEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHH T ss_conf 745999999999536421000124578788887735579981399999873898899999998 No 69 >2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Probab=95.08 E-value=0.1 Score=31.09 Aligned_cols=117 Identities=9% Similarity=0.127 Sum_probs=58.1 Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECC--CEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC Q ss_conf 0013431011001234432222221123200034137--60577645720132047442111134672158886301010 Q gi|254780479|r 213 KNCLTFSEGKSHLLGINTIKKKRPMRTGAVFIAITND--NRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT 290 (356) Q Consensus 213 ~~C~~~~~~~~~~~P~kk~KKkk~~r~~~~~vii~~~--~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~ 290 (356) +++..|+......||.+.. .--..++.+...+ -+|||.||... -+.|.|.+|++..+.+++........... T Consensus 22 ~~~~~y~~~~~~~y~~P~v-----avd~vif~~~~~~~~LkVLLv~R~~~-P~~g~WaLPGG~ve~gEsl~~Aa~REl~E 95 (273) T 2fml_A 22 EFLTWYHQQELPEYEKPSL-----TVDMVLLCYNKEADQLKVLLIQRKGH-PFRNSWALPGGFVNRNESTEDSVLRETKE 95 (273) T ss_dssp HHHHHHTTSCCCCCCCCEE-----EEEEEEEEEETTTTEEEEEEEEECSS-SSTTCEECCEEECCTTSCHHHHHHHHHHH T ss_pred HHHHHCCCCCCCCCCCCCC-----EEEEEEEEEECCCCEEEEEEEECCCC-CCCCCEECCEECCCCCCCHHHHHHHHHHH T ss_conf 9999656022468999962-----79899999957889048999974689-89998889841016998999999999999 Q ss_pred CCCEEC--CCE--EEEEEE-------EEEEEEEEEEECCCC-----CCCCCCEEECHHHHHH Q ss_conf 000213--735--899831-------599999999980776-----7667813322788874 Q gi|254780479|r 291 ANWILC--NTI--THTFTH-------FTLTLFVWKTIVPQI-----VIIPDSTWHDAQNLAN 336 (356) Q Consensus 291 ~~~~~l--~~i--kH~fTH-------~~L~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~ 336 (356) +....+ ..+ -++|+. ..+. ..|.+.++.. ....+..|++.+++.. T Consensus 96 EtGl~l~~~~l~ql~~f~~~~rdp~~~~vs-v~y~a~~~~~~~~~~~e~~~~~Wf~ldelp~ 156 (273) T 2fml_A 96 ETGVVISQENIEQLHSFSRPDRDPRGWVVT-VSYLAFIGEEPLIAGDDAKEVHWFNLERHGQ 156 (273) T ss_dssp HHCCCCCGGGEEEEEEECCTTSSTTSSEEE-EEEEEECCCCCCCCCTTEEEEEEEEEEEETT T ss_pred HHCCCCCCCCEEEEEEECCCCCCCCCEEEE-EEEEEEECCCCCCCCCCEEEEEEEEHHHCCC T ss_conf 856555564114578621578888841899-9999996898758997723679981898840 No 70 >2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isoprene biosynthesis, lipid synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens} Probab=95.04 E-value=0.2 Score=29.05 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=29.8 Q ss_pred CCCCEEEEEEEEEECCCEEEEEECCCC-HHHHCCCCCCCCCC Q ss_conf 222112320003413760577645720-13204744211113 Q gi|254780479|r 234 KRPMRTGAVFIAITNDNRILLRKRTNT-RLLEGMDELPGSAW 274 (356) Q Consensus 234 kk~~r~~~~~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~ 274 (356) -...|.+.++| .+.+|++||+||+.. ..+.|+|....+.. T Consensus 67 Gl~HRa~~v~v-~n~~g~lLLQrRs~~K~~~Pg~wd~s~~GH 107 (246) T 2pny_A 67 GLLHRAFSVVL-FNTKNRILIQQRSDTKVTFPGYFTDSCSSH 107 (246) T ss_dssp TCCEEEEEEEE-ECTTCCEEEEEECTTCSSSTTCBCCSEEEC T ss_pred CCEEEEEEEEE-EECCCCEEEEECCCCCCCCCCCEECCCCCC T ss_conf 96588999999-968997999964899878998563167776 No 71 >2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrolase, structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus HB8} PDB: 2yvn_A 2yvm_A* 2yvo_A* Probab=94.98 E-value=0.037 Score=34.18 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=50.0 Q ss_pred EEEECCCEEEEEE--CCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCC------CCEECCCEEEE--EEEEEEEEEEE Q ss_conf 0341376057764--57201320474421111346721588863010100------00213735899--83159999999 Q gi|254780479|r 244 IAITNDNRILLRK--RTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTA------NWILCNTITHT--FTHFTLTLFVW 313 (356) Q Consensus 244 vii~~~~kiLL~K--Rp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~------~~~~l~~ikH~--fTH~~L~i~v~ 313 (356) +.++.+|+++|.| |+.. =..+||||.+..+.+++.......+..++ .+..++.+... +|.. .+++| T Consensus 47 ~~~~~~~~vlLvrq~R~~~--~~~~~elP~G~ve~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~--~~~~f 122 (182) T 2yvp_A 47 LPVTERGTALLVRQYRHPT--GKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAV--VFHPF 122 (182) T ss_dssp EEBCTTSEEEEEEEEEGGG--TEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCC--EEEEE T ss_pred EEECCCCEEEEEEEEECCC--CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCE--EEEEE T ss_conf 9984899899999775468--9878987744678997999999998626447836427992367017952425--99999 Q ss_pred EEECC---CCC-----CCCCCEEECHHHHHHC Q ss_conf 99807---767-----6678133227888747 Q gi|254780479|r 314 KTIVP---QIV-----IIPDSTWHDAQNLANA 337 (356) Q Consensus 314 ~~~~~---~~~-----~~~~~~Wv~~~el~~~ 337 (356) .+... ... ...+..|++.+++..+ T Consensus 123 ~a~~~~~~~~~~~d~~E~~e~~~v~~~e~~~~ 154 (182) T 2yvp_A 123 LALKARVVTPPTLEEGELLESLELPLTEVYAL 154 (182) T ss_dssp EECSCEECSCCCCCTTCCEEEEEEEHHHHHHH T ss_pred EEEECCCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 99722206899999790689999809999999 No 72 >1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine diphospho-ribose, RV1700; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Probab=94.77 E-value=0.049 Score=33.32 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=48.0 Q ss_pred EEEECCCEEEEEECCCCHHHHCCCCCCCCCCC-CCCCHHHHHHCCCCCCCCEECCCEEEEE------EEEEEEEEEEEEE Q ss_conf 03413760577645720132047442111134-6721588863010100002137358998------3159999999998 Q gi|254780479|r 244 IAITNDNRILLRKRTNTRLLEGMDELPGSAWS-STKDGNIDTHSAPFTANWILCNTITHTF------THFTLTLFVWKTI 316 (356) Q Consensus 244 vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~-~~~~~~~~~~~~~~~~~~~~l~~ikH~f------TH~~L~i~v~~~~ 316 (356) +.++.+|+++|.+.-..+.-..+||||.+..+ .+++.......+..++.....+.+++.. +...-.+++|.+. T Consensus 49 l~~~~~g~vlLvrq~R~~~~~~~~elPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~~~~~~~~~~fla~ 128 (207) T 1mk1_A 49 VAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLAT 128 (207) T ss_dssp EECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEE T ss_pred EEECCCCEEEEEEEEECCCCCEEEECCCEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEE T ss_conf 99958999999992600379828845740026688899999999999873971562799989922796166079999998 Q ss_pred C----CCCC--C---CCCCEEECHHHHHHC Q ss_conf 0----7767--6---678133227888747 Q gi|254780479|r 317 V----PQIV--I---IPDSTWHDAQNLANA 337 (356) Q Consensus 317 ~----~~~~--~---~~~~~Wv~~~el~~~ 337 (356) . .... . .-+..|++.+|+..+ T Consensus 129 ~~~~~~~~~~~~eeE~iev~w~~~~E~~~~ 158 (207) T 1mk1_A 129 GLREVGRPEAHHEEADMTMGWYPIAEAARR 158 (207) T ss_dssp EEEECCC----------CEEEEEHHHHHHH T ss_pred ECCCCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 642257788899983289999989999999 No 73 >2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A Probab=94.67 E-value=0.035 Score=34.35 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=52.2 Q ss_pred CCEEEEEECCCCHHHHCCCCCCCCCCCCCCCH-HH------HHHCCCCCCCCEECC---CEEEEEEEEEEEEEEEEEECC Q ss_conf 76057764572013204744211113467215-88------863010100002137---358998315999999999807 Q gi|254780479|r 249 DNRILLRKRTNTRLLEGMDELPGSAWSSTKDG-NI------DTHSAPFTANWILCN---TITHTFTHFTLTLFVWKTIVP 318 (356) Q Consensus 249 ~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~-~~------~~~~~~~~~~~~~l~---~ikH~fTH~~L~i~v~~~~~~ 318 (356) ++.+|+.+| +.|.|.||++..+..+.. .. .++..........+. ...|..++.++..++|.+.+. T Consensus 64 ~~~vl~~~r-----~~g~~~~PgG~~~~~e~~~~~~~~Re~~Ee~Gl~~~~~~~l~~~y~~~h~~~~~~vv~h~Y~~~vt 138 (217) T 2xsq_A 64 RYAILMQMR-----FDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLT 138 (217) T ss_dssp EEEEEEEEE-----TTSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECC T ss_pred CCEEEEEEE-----CCCEEECCCEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEEEEEEECC T ss_conf 216899995-----699696897402799987999999999998587643137875357524548997299999999833 Q ss_pred C----------------CCCCCCCEEECHHHHHH--CCCCH Q ss_conf 7----------------67667813322788874--79987 Q gi|254780479|r 319 Q----------------IVIIPDSTWHDAQNLAN--AALPT 341 (356) Q Consensus 319 ~----------------~~~~~~~~Wv~~~el~~--~~LPs 341 (356) . .....+..|+++..+.+ +++|. T Consensus 139 ~~~l~~iE~~~~~a~d~~~E~l~l~~VPl~~L~d~~~~LPa 179 (217) T 2xsq_A 139 LEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPT 179 (217) T ss_dssp HHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTTSSTBHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCH T ss_conf 65654644035444668723103499864773005578727 No 74 >1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Probab=94.58 E-value=0.1 Score=31.03 Aligned_cols=94 Identities=5% Similarity=-0.053 Sum_probs=51.5 Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEE--EEEEEEEEEEE Q ss_conf 000341376057764572013204744211113467215888630101000------0213735899--83159999999 Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTITHT--FTHFTLTLFVW 313 (356) Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~--fTH~~L~i~v~ 313 (356) +.++...+++++|.+.---+.-..+||||.+..+.+++.......+..++. +..++.+..+ |+... +++| T Consensus 52 v~vv~~~~~~ilLv~qyR~~~~~~~~elPaG~id~gEsp~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~--~~~~ 129 (198) T 1vhz_A 52 VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSK--MNIV 129 (198) T ss_dssp EEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCE--EEEE T ss_pred EEEEEEECCEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEEE--EEEE T ss_conf 99999209999999823268884599788369999919899877999997599865589986021279700368--9999 Q ss_pred EEEC--CC-----CCCCCCCEEECHHHHHHC Q ss_conf 9980--77-----676678133227888747 Q gi|254780479|r 314 KTIV--PQ-----IVIIPDSTWHDAQNLANA 337 (356) Q Consensus 314 ~~~~--~~-----~~~~~~~~Wv~~~el~~~ 337 (356) .+.. +. .....+..|++.+++.++ T Consensus 130 ~a~~~~~~~~~~de~E~i~v~~~~~~e~~~l 160 (198) T 1vhz_A 130 VAQDLYPESLEGDEPEPLPQVRWPLAHMMDL 160 (198) T ss_dssp EEEEEEECCCCCCCSSCCCEEEEEGGGGGGG T ss_pred EEEECCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 9977536777999694589999899999999 No 75 >1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Probab=94.38 E-value=0.032 Score=34.58 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=48.6 Q ss_pred EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCH-HHH------HHCCCCCCCCEECCCEEEEEEEE-----EEEEEEE Q ss_conf 41376057764572013204744211113467215-888------63010100002137358998315-----9999999 Q gi|254780479|r 246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDG-NID------THSAPFTANWILCNTITHTFTHF-----TLTLFVW 313 (356) Q Consensus 246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~-~~~------~~~~~~~~~~~~l~~ikH~fTH~-----~L~i~v~ 313 (356) +..+..+|+++|. .|.|+||++..+.++.. ... ++......... +....|.+||. ++-.++| T Consensus 52 ~~~~~~vl~~~r~-----~g~~~~pgG~~~~~e~~~~~~~~re~~ee~g~~~~~~~-l~~~~y~~s~~~~~~~~~v~hfy 125 (212) T 1u20_A 52 VPIRRVLLMMMRF-----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE-VTEDDYRSSQVREHPQKCVTHFY 125 (212) T ss_dssp EECCEEEEEEEET-----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCC-CCGGGEEEEEEECTTSCEEEEEE T ss_pred EECCCEEEEEEEC-----CCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE-EEECCEEEECCCCCCCEEEEEEE T ss_conf 6257678999945-----99286997213799863999888899998587532157-65412486378789976999999 Q ss_pred EEECCC----------------CCCCCCCEEECHHHHHH--CCCCH Q ss_conf 998077----------------67667813322788874--79987 Q gi|254780479|r 314 KTIVPQ----------------IVIIPDSTWHDAQNLAN--AALPT 341 (356) Q Consensus 314 ~~~~~~----------------~~~~~~~~Wv~~~el~~--~~LPs 341 (356) ...+.. ..+..+..|++..++.+ +++|. T Consensus 126 ~~~lt~~el~~~E~~~~~a~~~~~Evl~~~wVPl~~L~~~~~~lP~ 171 (212) T 1u20_A 126 IKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPA 171 (212) T ss_dssp EEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHH T ss_pred EEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCHH T ss_conf 7864788888876134446667633234214579996352367512 No 76 >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Probab=92.37 E-value=0.13 Score=30.41 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=39.3 Q ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 7898729989999997404634588999877675430057868731456888887778776677 Q gi|254780479|r 71 IFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAI 134 (356) Q Consensus 71 ~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai 134 (356) +..+=.|+.+|+..+ .|+|+. +|+.+.+--. -.|.| .+.++|..+||||+.|..-| T Consensus 31 L~~iNtAs~~eL~~l-pgIg~~-~A~~Iv~~R~-----~~G~f-~sledL~~v~Gi~~k~~eki 86 (98) T 2edu_A 31 LDLLNEGSARDLRSL-QRIGPK-KAQLIVGWRE-----LHGPF-SQVEDLERVEGITGKQMESF 86 (98) T ss_dssp HHHHHHSCHHHHHHS-TTCCHH-HHHHHHHHHH-----HHCCC-SSGGGGGGSTTCCHHHHHHH T ss_pred CCCCCCCCHHHHHHC-CCCCHH-HHHHHHHHHH-----HCCCC-CCHHHHHCCCCCCHHHHHHH T ss_conf 100437899999647-998999-9999999999-----85992-88999844899899999999 No 77 >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Probab=89.05 E-value=0.1 Score=31.13 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCC-EEEECCCCHHHHHHHHHCC Q ss_conf 56888887778776677664-3496-3131243146665765197 Q gi|254780479|r 118 EILKKLPGIGDYTASAIVAI-AFNH-FAVVVDTNIERIISRYFDI 160 (356) Q Consensus 118 ~~l~~LpGiG~yta~ai~s~-a~~~-~~~~vD~Nv~RVl~R~~~~ 160 (356) +.|++..||||.||=+|+|. ..++ ..++..+|+.. |+++-|| T Consensus 88 ~~Li~VsGIGPK~AL~ILs~~~~~~l~~aI~~~D~~~-L~~vpGI 131 (212) T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAA-LTRVPGI 131 (212) T ss_dssp HHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHH-HHTSTTC T ss_pred HHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHH-HHHCCCC T ss_conf 9998348977467878885499999999998089999-8517782 No 78 >2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A Probab=88.92 E-value=0.72 Score=25.08 Aligned_cols=87 Identities=8% Similarity=-0.052 Sum_probs=45.8 Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC------CCCCCCEECCCEEE--EEEEEEEEEEEEEEECCCC- Q ss_conf 60577645720132047442111134672158886301------01000021373589--9831599999999980776- Q gi|254780479|r 250 NRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSA------PFTANWILCNTITH--TFTHFTLTLFVWKTIVPQI- 320 (356) Q Consensus 250 ~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~------~~~~~~~~l~~ikH--~fTH~~L~i~v~~~~~~~~- 320 (356) ++++|.+.---++-+.+||||.+..+.+++.......+ .....+..++.+-. .++.-.+++.+........ T Consensus 77 ~~vlLvrQ~R~~~~~~~~ElPaG~ie~gE~~~~aA~REL~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~~a~~~~~~~~ 156 (212) T 2dsc_A 77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAE 156 (212) T ss_dssp CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGG T ss_pred CEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCHHC T ss_conf 88999994545888807866774788998999999999999769882047896369616732687199999999740203 Q ss_pred -----C-----CCCCCEEECHHHHHH Q ss_conf -----7-----667813322788874 Q gi|254780479|r 321 -----V-----IIPDSTWHDAQNLAN 336 (356) Q Consensus 321 -----~-----~~~~~~Wv~~~el~~ 336 (356) . ..-+..|++.+++.+ T Consensus 157 ~~~~~~~~de~E~iev~~vp~~e~~~ 182 (212) T 2dsc_A 157 NARPKPKPGDGEFVEVISLPKNDLLQ 182 (212) T ss_dssp GSSCCCCCCTTCCCEEEEEEGGGHHH T ss_pred CCCCCCCCCCCCEEEEEEEEHHHHHH T ss_conf 47788789999469999987999999 No 79 >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Probab=87.81 E-value=0.26 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=22.0 Q ss_pred HCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0057868---73145688888777877667766 Q gi|254780479|r 107 KKYEGNF---PHKVEILKKLPGIGDYTASAIVA 136 (356) Q Consensus 107 ~~~~g~~---P~~~~~l~~LpGiG~yta~ai~s 136 (356) .++++++ -.+.++|.+|||||+.+|.+|.. T Consensus 49 ~~~g~kidlN~A~~~eL~~lpGig~~~A~~Iv~ 81 (134) T 1s5l_U 49 TAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVK 81 (134) T ss_dssp TTSTTSEETTTSCGGGGGGSTTCTHHHHHHHHH T ss_pred HCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 034770416407899997710346999999998 No 80 >3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural genomics, protein structure initiative; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Probab=87.47 E-value=0.75 Score=24.97 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=54.9 Q ss_pred EEEEEEEEECCCEEEEEECCC-CHHHHCCCCCC-CCCCCCCCCHHH------HHHCCCCC---CCCEECCCEEEEEE--E Q ss_conf 232000341376057764572-01320474421-111346721588------86301010---00021373589983--1 Q gi|254780479|r 239 TGAVFIAITNDNRILLRKRTN-TRLLEGMDELP-GSAWSSTKDGNI------DTHSAPFT---ANWILCNTITHTFT--H 305 (356) Q Consensus 239 ~~~~~vii~~~~kiLL~KRp~-~gll~GLwEFP-~~e~~~~~~~~~------~~~~~~~~---~~~~~l~~ikH~fT--H 305 (356) ..+.++.-+.+++++|.||.. +..+.|+|..+ .+....++.... .++..... ......+.+...+. + T Consensus 122 h~~~~~~~~~~~~lwl~rRS~~K~~~PG~~D~~~aG~~~~Ges~~eaa~RE~~EEaGl~~~~~~~l~~~g~v~y~~~~~~ 201 (300) T 3dup_A 122 HLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPA 201 (300) T ss_dssp EEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETT T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCC T ss_conf 89999955997699987356866779985323424321889888999999999981998788875134522899951589 Q ss_pred -E-EEEEEEEEEECCC-------CCCCCCCEEECHHHHHHC-----C-CCHHHHHHHH Q ss_conf -5-9999999998077-------676678133227888747-----9-9878999998 Q gi|254780479|r 306 -F-TLTLFVWKTIVPQ-------IVIIPDSTWHDAQNLANA-----A-LPTVMKKALS 348 (356) Q Consensus 306 -~-~L~i~v~~~~~~~-------~~~~~~~~Wv~~~el~~~-----~-LPs~~kKIL~ 348 (356) + .-.+.+|...++. ..+.+++.|++.+|+.+. . -|...--+|+ T Consensus 202 ~~~~e~~~vy~l~l~~d~~p~~~d~EVe~f~~~~~~Ev~~~l~~~e~fkpn~~lvilD 259 (300) T 3dup_A 202 GIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVID 259 (300) T ss_dssp EEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBCTTHHHHHHH T ss_pred CCCCEEEEEEEEEECCCCCCCCCHHHEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHH T ss_conf 9776799999999679986269822677899955999999987879748200889989 No 81 >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A Probab=87.36 E-value=0.15 Score=29.92 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HCCC-EEEECCCCHHHHHHHHHCC Q ss_conf 56888887778776677664-3496-3131243146665765197 Q gi|254780479|r 118 EILKKLPGIGDYTASAIVAI-AFNH-FAVVVDTNIERIISRYFDI 160 (356) Q Consensus 118 ~~l~~LpGiG~yta~ai~s~-a~~~-~~~~vD~Nv~RVl~R~~~~ 160 (356) +.|++..||||.+|=+|+|- ..++ ..++.++++.. |+++-|+ T Consensus 73 ~~Li~VsGIGPK~AL~ILs~~~~~~l~~aI~~~D~~~-L~~vpGI 116 (203) T 1cuk_A 73 KELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGA-LVKLPGI 116 (203) T ss_dssp HHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHH-HHTSTTC T ss_pred HHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHH-HHCCCCC T ss_conf 9985768857566888861279899999987189988-6069987 No 82 >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 Probab=86.62 E-value=0.078 Score=31.88 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=34.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HCC-CEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC Q ss_conf 456888887778776677664-349-631312431466657651975457356899987410257 Q gi|254780479|r 117 VEILKKLPGIGDYTASAIVAI-AFN-HFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKIT 179 (356) Q Consensus 117 ~~~l~~LpGiG~yta~ai~s~-a~~-~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~ 179 (356) ++.|++..||||.+|=+|+|. .-+ ...++..+|+.. |+++-|+-. +.+++.+-++.+++. T Consensus 71 F~~Li~V~GIGpK~Al~ILs~~~~~~l~~aI~~~D~~~-L~~vpGIGk--KtAerIilELk~K~~ 132 (191) T 1ixr_A 71 FELLLSVSGVGPKVALALLSALPPRLLARALLEGDARL-LTSASGVGR--RLAERIALELKGKVP 132 (191) T ss_dssp HHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHH-HTTSTTCCH--HHHHHHHHHHTTTSC T ss_pred HHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHH-HHCCCCCCH--HHHHHHHHHHHHHCC T ss_conf 99985768837788988872599999999998399999-501888468--899999999986434 No 83 >3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U* Probab=86.30 E-value=0.16 Score=29.72 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=15.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3145688888777877667766 Q gi|254780479|r 115 HKVEILKKLPGIGDYTASAIVA 136 (356) Q Consensus 115 ~~~~~l~~LpGiG~yta~ai~s 136 (356) .+.++|.+|||||+.+|.+|.. T Consensus 30 As~~eL~~lpGig~~~A~~Iv~ 51 (104) T 3bz1_U 30 TNIAAFIQYRGLYPTLAKLIVK 51 (104) T ss_dssp SCGGGGGGSTTTTHHHHHHHHH T ss_pred CCHHHHHHCCCCCHHHHHHHHH T ss_conf 8999996589979999999997 No 84 >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Probab=86.01 E-value=0.18 Score=29.29 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31456888887778776677664 Q gi|254780479|r 115 HKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 115 ~~~~~l~~LpGiG~yta~ai~s~ 137 (356) .+.++|.+|||||+.+|.+|... T Consensus 37 As~~eL~~lpgIg~~~A~~Iv~~ 59 (98) T 2edu_A 37 GSARDLRSLQRIGPKKAQLIVGW 59 (98) T ss_dssp SCHHHHHHSTTCCHHHHHHHHHH T ss_pred CCHHHHHHCCCCCHHHHHHHHHH T ss_conf 89999964799899999999999 No 85 >1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Probab=85.04 E-value=0.15 Score=29.92 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=59.4 Q ss_pred HHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH Q ss_conf 04676644673116120332658998774899789872998999999740463458899987767543005786873145 Q gi|254780479|r 39 PYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVE 118 (356) Q Consensus 39 py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~ 118 (356) |+....+-.-.|+++. ..++=+.+++.|-.+.++.+.. |-. -|++--.++|..|. .+...+ .+.+ T Consensus 16 ~~~~~~~~~~c~r~~~--~~~~N~~i~~~l~~la~~~e~~---------gd~--fr~~AY~rAa~~i~-~l~~~i-~~~~ 80 (381) T 1jms_A 16 PAVKKISQYACQRRTT--LNNYNQLFTDALDILAENDELR---------ENE--GSCLAFMRASSVLK-SLPFPI-TSMK 80 (381) T ss_dssp ---CCCCSCGGGSCBC--SCCTTHHHHHHHHHHHHHHHHT---------TCH--HHHHHHHHHHHHHH-TCSSCC-CSGG T ss_pred CCCCCCCCCEEECCCC--CCCCCHHHHHHHHHHHHHHHHC---------CCC--HHHHHHHHHHHHHH-HCCCCC-CCHH T ss_conf 8523677612408999--9897699999999999999973---------980--87999999999998-589777-9999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECC-------CCHHHHHHHHHCC Q ss_conf 68888877787766776643496313124-------3146665765197 Q gi|254780479|r 119 ILKKLPGIGDYTASAIVAIAFNHFAVVVD-------TNIERIISRYFDI 160 (356) Q Consensus 119 ~l~~LpGiG~yta~ai~s~a~~~~~~~vD-------~Nv~RVl~R~~~~ 160 (356) +|..|||||+.+|.-|--|.-.-...-++ ..+..-|.+++|+ T Consensus 81 ~l~~ipGIG~~i~~kI~Eil~tG~l~~le~l~~~~~~~~l~~l~~I~Gi 129 (381) T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGV 129 (381) T ss_dssp GGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTC T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCC T ss_conf 9836999519999999999984985889998701533688998737787 No 86 >2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Probab=84.27 E-value=1.3 Score=23.33 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 88999877675430057868731456888887778776677664349 Q gi|254780479|r 94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFN 140 (356) Q Consensus 94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~ 140 (356) |+|--.++|..| +.+...+ .+.++|..|||||+.+|..|.-|.-. T Consensus 35 r~~AY~rAa~~l-~~l~~~i-~~~~~l~~ipGIGk~i~~kI~Eil~t 79 (335) T 2bcq_A 35 RALGYAKAINAL-KSFHKPV-TSYQEACSIPGIGKRMAEKIIEILES 79 (335) T ss_dssp HHHHHHHHHHHH-HSCCSCC-CCHHHHHTSTTCCHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHH-HHCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHHC T ss_conf 799999999999-8599766-89999717999758999999999973 No 87 >2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus} Probab=83.26 E-value=0.64 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88999877675430057868731456888887778776677664 Q gi|254780479|r 94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~ 137 (356) |++-..+|+..| ..|...+ .+.+++..|||||+.+|.-|--+ T Consensus 36 ~~~aY~kA~~sL-k~~p~~I-~s~~~l~~l~GIG~~i~~ki~e~ 77 (87) T 2kp7_A 36 TRFVFQKALRSL-QRYPLPL-RSGKEAKILQHFGDRLCRMLDEK 77 (87) T ss_dssp THHHHHHHHHHH-HHCCSCC-CSHHHHHTCTTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHH-HHCCCCC-CCHHHHHHCCCCCHHHHHHHHHH T ss_conf 799999999999-9789988-88999972799778999999999 No 88 >1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Probab=83.16 E-value=2.4 Score=21.36 Aligned_cols=94 Identities=3% Similarity=-0.084 Sum_probs=46.8 Q ss_pred EEEE-CCCEEEEEECCCCHHH-----HCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEEE------EEEEEE Q ss_conf 0341-3760577645720132-----047442111134672158886301010000213735899831------599999 Q gi|254780479|r 244 IAIT-NDNRILLRKRTNTRLL-----EGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFTH------FTLTLF 311 (356) Q Consensus 244 vii~-~~~kiLL~KRp~~gll-----~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fTH------~~L~i~ 311 (356) ++++ .+++++|.+.---++. +-+||||.+..+.+++.......+...+..-..+.+.+..+- -.-.++ T Consensus 63 l~~~~~~~~vvLvrQ~R~~~~~~~~~~~~lElPaG~ie~gEsp~~aA~REL~EEtG~~~~~~~~l~~~~~spg~~~e~~~ 142 (209) T 1g0s_A 63 LPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSS 142 (209) T ss_dssp EEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTBCCEEE T ss_pred EEEECCCCEEEEEEEEEECCCCCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCEE T ss_conf 99976899899999997274027898607865755048988999999989998658976556884268607854487269 Q ss_pred EEEEECC--CCC---------CCCCCEEECHHHHHHC Q ss_conf 9999807--767---------6678133227888747 Q gi|254780479|r 312 VWKTIVP--QIV---------IIPDSTWHDAQNLANA 337 (356) Q Consensus 312 v~~~~~~--~~~---------~~~~~~Wv~~~el~~~ 337 (356) +|.+.+. ... ..-+..|++.+++.++ T Consensus 143 ~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~ 179 (209) T 1g0s_A 143 IMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 179 (209) T ss_dssp EEEEECCGGGCC--------CCSCEEEEEEHHHHHHH T ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 9999980333547789999995069999879999999 No 89 >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} SCOP: a.60.2.7 Probab=81.51 E-value=0.27 Score=28.14 Aligned_cols=23 Identities=43% Similarity=0.499 Sum_probs=15.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31456888887778776677664 Q gi|254780479|r 115 HKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 115 ~~~~~l~~LpGiG~yta~ai~s~ 137 (356) .+.++|.+|||||+..|.+|... T Consensus 24 As~~eL~~lpGig~~~A~~Iv~~ 46 (75) T 2duy_A 24 ASLEELMALPGIGPVLARRIVEG 46 (75) T ss_dssp CCHHHHTTSTTCCHHHHHHHHHT T ss_pred CCHHHHHHCCCCCHHHHHHHHHC T ss_conf 87999977789899999999985 No 90 >1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A Probab=80.56 E-value=0.43 Score=26.70 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=17.1 Q ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHH Q ss_conf 873145----6888887778776677664 Q gi|254780479|r 113 FPHKVE----ILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 113 ~P~~~~----~l~~LpGiG~yta~ai~s~ 137 (356) +|...+ .|.+|||||+.||--++-+ T Consensus 3 ~p~~ie~LI~~l~kLPGIG~KsA~RlA~~ 31 (228) T 1vdd_A 3 YPPSLVSLIRELSRLPGIGPKSAQRLAFH 31 (228) T ss_dssp CCHHHHHHHHHHHTSTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 95999999999966899988999999999 No 91 >3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U* Probab=80.47 E-value=0.39 Score=26.98 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=41.3 Q ss_pred CHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 97898729989999997404634588999877675430057868731456888887778776677664 Q gi|254780479|r 70 TIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 70 ~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~ 137 (356) .--+|=.|+.+|+.++ .|+| ...|+.+. + +|.| .+.++|+..+|||+.+...|-.. T Consensus 23 ~kidlN~As~~eL~~l-pGig-~~~A~~Iv-------~--~gpf-~s~~dL~~V~Gig~~~~e~ik~y 78 (104) T 3bz1_U 23 EKIDLNNTNIAAFIQY-RGLY-PTLAKLIV-------K--NAPY-ESVEDVLNIPGLTERQKQILREN 78 (104) T ss_dssp TBEETTSSCGGGGGGS-TTTT-HHHHHHHH-------H--SCCC-SSGGGGGGCTTCCHHHHHHHHHH T ss_pred CCEECCCCCHHHHHHC-CCCC-HHHHHHHH-------H--CCCC-CCHHHHHCCCCCCHHHHHHHHHH T ss_conf 8357840899999658-9979-99999999-------7--4997-98999963899899999999986 No 92 >2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Probab=80.03 E-value=1.8 Score=22.29 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 88999877675430057868731456888887778776677664349 Q gi|254780479|r 94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFN 140 (356) Q Consensus 94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~ 140 (356) |++--.++|..|. .+...+ .+.+++..|||||..+|..|.-|.-. T Consensus 39 r~~aY~~Aa~~i~-~l~~~i-~~~~~~~~i~gIG~~i~~kI~e~l~t 83 (360) T 2ihm_A 39 RLLSFSRAASVLK-SLPCPV-ASLSQLHGLPYFGEHSTRVIQELLEH 83 (360) T ss_dssp HHHHHHHHHHHHH-HCSSCC-CSGGGGTTCTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-HCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHHC T ss_conf 7999999999998-599778-99999836999878999999999953 No 93 >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Probab=79.62 E-value=0.29 Score=27.85 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=22.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCH Q ss_conf 7314568888877787766776643496313124314 Q gi|254780479|r 114 PHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNI 150 (356) Q Consensus 114 P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv 150 (356) -.+.++|.++||||+.+|.+|..+- .+|..-.+|++ T Consensus 47 ~As~eeL~~i~GiG~~~A~~I~~~f-~~pf~~~~~g~ 82 (89) T 1z00_A 47 AASREDLALCPGLGPQKARRLFDVL-HEPFLKVPGGL 82 (89) T ss_dssp HCCHHHHHTSTTCCHHHHHHHHHHH-HSCSSSCSSSS T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-CCHHCCCCCCC T ss_conf 9878777268996999999999998-08420488974 No 94 >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A Probab=78.37 E-value=0.43 Score=26.67 Aligned_cols=52 Identities=31% Similarity=0.288 Sum_probs=31.8 Q ss_pred HHHHHHCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99997404634588999877--675430057868731456888887778776677664 Q gi|254780479|r 82 ILSAWAGLGYYTRARNLKKC--ADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 82 vl~~w~gLGyy~Rar~l~~~--a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~ 137 (356) .|.-.+|.|-- -|-++... ...+.+- ..=.|.+.|.++||||+.||.-|..= T Consensus 74 ~Li~VsGIGPK-~AL~ILs~~~~~~l~~a---I~~~D~~~L~~vpGIGkKtA~rIilE 127 (203) T 1cuk_A 74 ELIKTNGVGPK-LALAILSGMSAQQFVNA---VEREEVGALVKLPGIGKKTAERLIVE 127 (203) T ss_dssp HHHHSSSCCHH-HHHHHHHHSCHHHHHHH---HHTTCHHHHHTSTTCCHHHHHHHHHH T ss_pred HHHCCCCCCHH-HHHHHHHCCCHHHHHHH---HHHCCHHHHHCCCCCCHHHHHHHHHH T ss_conf 98576885756-68888612798999999---87189988606998779999999999 No 95 >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Probab=77.76 E-value=2.8 Score=20.95 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=26.7 Q ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 58998774899789872998999999740463458899987 Q gi|254780479|r 60 YFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKK 100 (356) Q Consensus 60 ~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~ 100 (356) -..+.+++|-+++.|++|+++|+... .| | -..|+.++. T Consensus 16 ~~~~Ll~~fgSi~~l~~as~eeL~~v-~G-~-~~~A~~i~~ 53 (63) T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSI-LG-N-AANAKQLYD 53 (63) T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHH-HS-C-HHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHCCHHHHHHC-CC-C-HHHHHHHHH T ss_conf 99999998679999987999999878-69-8-999999999 No 96 >1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Probab=75.98 E-value=4 Score=19.82 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=22.3 Q ss_pred EEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHH Q ss_conf 0577645720132047442111134672158886 Q gi|254780479|r 251 RILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDT 284 (356) Q Consensus 251 kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~ 284 (356) ++|+.+|+..| .|.||++..+.++...... T Consensus 140 evLlI~R~d~g----~WaLPGG~Vd~GEs~~~Aa 169 (292) T 1q33_A 140 QFVAIKRKDCG----EWAIPGGMVDPGEKISATL 169 (292) T ss_dssp EEEEEECTTTC----SEECCCEECCTTCCHHHHH T ss_pred EEEEEEECCCC----CEECCCCCCCCCCCHHHHH T ss_conf 89999966999----7869965478999989999 No 97 >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Probab=75.87 E-value=0.51 Score=26.17 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=14.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 731456888887778776677664 Q gi|254780479|r 114 PHKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 114 P~~~~~l~~LpGiG~yta~ai~s~ 137 (356) -.+.++|..+||||+-+|.+|..+ T Consensus 60 ~As~eeL~~i~GIG~~~A~~I~~~ 83 (91) T 2a1j_B 60 AASREDLALCPGLGPQKARRLFDV 83 (91) T ss_dssp SCCHHHHHTSSSCCSHHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 989997557799699999999999 No 98 >2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Probab=75.76 E-value=0.35 Score=27.29 Aligned_cols=43 Identities=30% Similarity=0.436 Sum_probs=19.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889998776754300578687314568888877787766776643 Q gi|254780479|r 94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIA 138 (356) Q Consensus 94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a 138 (356) |++--.++|..|. .+...+ .+.+++..|||||+.+|..|--|. T Consensus 35 k~~AY~rAa~~i~-~l~~~i-~~~~~l~~i~GiG~~i~~kI~Eil 77 (335) T 2fmp_A 35 KYNAYRKAASVIA-KYPHKI-KSGAEAKKLPGVGTKIAEKIDEFL 77 (335) T ss_dssp HHHHHHHHHHHHH-HCSSCC-CCHHHHHTSTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-HCCCCC-CCHHHHHCCCCCCHHHHHHHHHHH T ss_conf 8999999999998-599566-788988369997489999999999 No 99 >2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Probab=75.45 E-value=0.61 Score=25.58 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=33.2 Q ss_pred HHHHHCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9997404634588999877--6754300578687314568888877787766776643496 Q gi|254780479|r 83 LSAWAGLGYYTRARNLKKC--ADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH 141 (356) Q Consensus 83 l~~w~gLGyy~Rar~l~~~--a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~ 141 (356) |.-.+|.|-- -|-.+... ...+..- ..=.|...|.++||||+.||.-|..=--++ T Consensus 90 Li~VsGIGPK-~AL~ILs~~~~~~l~~a---I~~~D~~~L~~vpGIGkKtAeRIilELkdK 146 (212) T 2ztd_A 90 LLSVSGVGPR-LAMAALAVHDAPALRQV---LADGNVAALTRVPGIGKRGAERMVLELRDK 146 (212) T ss_dssp HHTSTTCCHH-HHHHHHHHSCHHHHHHH---HHTTCHHHHHTSTTCCHHHHHHHHHHHTTT T ss_pred HHHCCCCCHH-HHHHHHHCCCHHHHHHH---HHHCCHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 9834897746-78788854999999999---980899998517782488899999999754 No 100 >1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2 Probab=74.88 E-value=0.53 Score=26.03 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=33.8 Q ss_pred HHHHHCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9997404634588999877--6754300578687314568888877787766776643496 Q gi|254780479|r 83 LSAWAGLGYYTRARNLKKC--ADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH 141 (356) Q Consensus 83 l~~w~gLGyy~Rar~l~~~--a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~ 141 (356) |.-.+|.|- .-|-++... ...+..- ..=.|...|.++||||+.||.-|..=--++ T Consensus 74 Li~V~GIGp-K~Al~ILs~~~~~~l~~a---I~~~D~~~L~~vpGIGkKtAerIilELk~K 130 (191) T 1ixr_A 74 LLSVSGVGP-KVALALLSALPPRLLARA---LLEGDARLLTSASGVGRRLAERIALELKGK 130 (191) T ss_dssp HHSSSCCCH-HHHHHHHHHSCHHHHHHH---HHTTCHHHHTTSTTCCHHHHHHHHHHHTTT T ss_pred HHCCCCCCH-HHHHHHHHCCCHHHHHHH---HHCCCHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 857688377-889888725999999999---983999995018884688999999999864 No 101 >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Probab=74.53 E-value=4.3 Score=19.64 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=35.9 Q ss_pred HHHHHHHHHHHHCCHHHCCH-HHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 46766446731161203326-589987748997898729989999997404634588999877 Q gi|254780479|r 40 YKVWISEIMLQQTTVKTVEP-YFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKC 101 (356) Q Consensus 40 y~v~vseimlqqT~v~~v~~-~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~ 101 (356) |..-+-++++ .+.-|-+ -+.+.+++|.+++.|++|+++|+... .| | -..|+.|+.. T Consensus 12 ~n~~~~~~L~---~iPGIg~k~~~~Ll~~f~sl~~i~~AS~eeL~~v-~G-~-~~~Ak~i~~~ 68 (84) T 1z00_B 12 YNPGPQDFLL---KMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI-LG-N-AANAKQLYDF 68 (84) T ss_dssp SCHHHHHHHH---TCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH-HS-C-HHHHHHHHHH T ss_pred HCCHHHHHHH---CCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHC-CC-C-HHHHHHHHHH T ss_conf 3211999998---3899999999999999669999985999999887-59-7-9999999999 No 102 >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Probab=73.85 E-value=0.42 Score=26.73 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=16.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 314568888877787766776643 Q gi|254780479|r 115 HKVEILKKLPGIGDYTASAIVAIA 138 (356) Q Consensus 115 ~~~~~l~~LpGiG~yta~ai~s~a 138 (356) .+.++|..+||||+-+|..|..+- T Consensus 43 As~eeL~~v~GIG~~~a~~i~~~~ 66 (75) T 1x2i_A 43 ASVAELMKVEGIGEKIAKEIRRVI 66 (75) T ss_dssp CCHHHHTTSTTCCHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 789999855897999999999998 No 103 >2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans} Probab=71.26 E-value=0.91 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=16.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6873145688888777877667766 Q gi|254780479|r 112 NFPHKVEILKKLPGIGDYTASAIVA 136 (356) Q Consensus 112 ~~P~~~~~l~~LpGiG~yta~ai~s 136 (356) ..|....+|+++||||+.||..+-. T Consensus 91 ~~~~~~~~l~~I~GvGpk~A~~l~~ 115 (578) T 2w9m_A 91 QLPPGLLDLLGVRGLGPKKIRSLWL 115 (578) T ss_dssp HSCHHHHHHTTSTTCCHHHHHHHHH T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHH T ss_conf 4617799984789868999999998 No 104 >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Probab=60.56 E-value=1.6 Score=22.64 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=9.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 145688888777877667766 Q gi|254780479|r 116 KVEILKKLPGIGDYTASAIVA 136 (356) Q Consensus 116 ~~~~l~~LpGiG~yta~ai~s 136 (356) +.++|.++||||+-+|..|.. T Consensus 54 s~eeL~~v~GIg~~~A~~I~~ 74 (78) T 1kft_A 54 SVEEIAKVPGISQGLAEKIFW 74 (78) T ss_dssp CHHHHTTSSSTTSHHHHHHHH T ss_pred CHHHHHCCCCCCHHHHHHHHH T ss_conf 799998079989999999999 No 105 >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 Probab=60.53 E-value=3.5 Score=20.29 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=27.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCC Q ss_conf 731456888887778776677664349631312431466657651975 Q gi|254780479|r 114 PHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDII 161 (356) Q Consensus 114 P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~ 161 (356) |...+.|.. +|||+-|+.-+-.-+|+--.-+....... |+.+-|+. T Consensus 22 ~~~I~~L~~-~Gvg~~~i~KL~~aG~~Tv~~Ia~~t~~e-L~~i~Gi~ 67 (114) T 1b22_A 22 PQPISRLEQ-CGINANDVKKLEEAGFHTVEAVAYAPKKE-LINIKGIS 67 (114) T ss_dssp CCCHHHHHH-TTCSHHHHHHHHTTCCSSGGGBTSSBHHH-HHTTTTCS T ss_pred CCCHHHHHH-CCCCHHHHHHHHHCCCCHHHHHHHCCHHH-HHHCCCCC T ss_conf 822899976-89999999999996974499998489999-97666988 No 106 >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Probab=60.22 E-value=8.3 Score=17.62 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=36.1 Q ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 4046345889998776754300578687314568888877787766776 Q gi|254780479|r 87 AGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIV 135 (356) Q Consensus 87 ~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~ 135 (356) ...|+++-+.++...+|.|... .+|. ...|+.||++|+..+..+. T Consensus 134 ~~~~~~~~~~~~l~l~q~i~q~---~w~~-~~pL~Qlp~i~~~~~~~l~ 178 (339) T 2q0z_X 134 SSNGWLSPALAAMELAQMVTQA---MWSK-DSYLKQLPHFTSEHIKRCT 178 (339) T ss_dssp HHTTBHHHHHHHHHHHHHHHHT---CCTT-SCGGGGSTTCCHHHHHHHH T ss_pred HHCCCHHHHHHHHHHHHHHHHH---CCCC-CCHHHCCCCCCHHHHHHHH T ss_conf 8659899999999999998866---3899-7732324658999999998 No 107 >1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... Probab=57.75 E-value=1.7 Score=22.39 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=29.6 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 740463458899987767543005786873145688888777877667766 Q gi|254780479|r 86 WAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVA 136 (356) Q Consensus 86 w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s 136 (356) -.|+|- ..|+.|..+- + ......+=.+.++|.++||||+.+|.-|.. T Consensus 20 i~gvG~-~~~~~l~~~g--~-~~~~~i~~~~~~~L~~~~g~g~k~a~~i~~ 66 (241) T 1vq8_Y 20 ISGVGP-SKAESLREAG--F-ESVEDVRGADQSALADVSGIGNALAARIKA 66 (241) T ss_dssp --------------------------------------------------- T ss_pred CCCCCH-HHHHHHHHCC--C-CCHHHHHHCCHHHHHHCCCCCHHHHHHHHH T ss_conf 899899-9999999768--9-999999869999997468957999999999 No 108 >2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 Probab=57.54 E-value=1.9 Score=22.16 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=44.1 Q ss_pred HCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 48997898729989999997404634588999877675430057868731--4568888877787766776643496313 Q gi|254780479|r 67 KWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHK--VEILKKLPGIGDYTASAIVAIAFNHFAV 144 (356) Q Consensus 67 ~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~--~~~l~~LpGiG~yta~ai~s~a~~~~~~ 144 (356) +|-++.+-|.+.+..++..- ..+-.+.-++=||-.-|-+ .-.|.-|||||..|+-.|+----..|-- T Consensus 90 ~y~dLt~~Ak~eL~~vv~~i-----------V~~nE~~FV~FfN~A~pItlrlH~leLLPGIGKK~~~~IleeR~k~~Fe 158 (205) T 2i5h_A 90 RYEDLTPAAKTELPYVIEHI-----------IKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFE 158 (205) T ss_dssp CGGGSCHHHHHHHHHHHHHH-----------HHTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCC T ss_pred CHHHCCHHHHHHHHHHHHHH-----------HHHCCHHCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC T ss_conf 28760789999899999999-----------9959020101324688861878888752350589999999996558988 Q ss_pred ECCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHH Q ss_conf 1243146665765197545735-6899987410 Q gi|254780479|r 145 VVDTNIERIISRYFDIIKPAPL-YHKTIKNYAR 176 (356) Q Consensus 145 ~vD~Nv~RVl~R~~~~~~~~~~-~~k~l~~~~~ 176 (356) - ..-+-.|+-|+..+... .+..+.++.+ T Consensus 159 S----Fedi~~Rv~gi~dp~~lia~Ri~~El~~ 187 (205) T 2i5h_A 159 S----FEDIAQRVKGIQRPEKLIVSRIIYEIKN 187 (205) T ss_dssp S----HHHHHHHSTTCCCHHHHHHHHHHHHHHC T ss_pred C----HHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 9----9999988446789999999999999649 No 109 >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus} Probab=57.52 E-value=9.2 Score=17.31 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=9.1 Q ss_pred HHHHHHHHHHCC-CC-CCCCC Q ss_conf 999999999628-99-88754 Q gi|254780479|r 9 QSKILDWYDTNH-RV-LPWRT 27 (356) Q Consensus 9 ~~~ll~w~~~~~-R~-lpwr~ 27 (356) .+.+++.+++.| .. .||+. T Consensus 16 p~~l~~~l~~~g~~~l~p~Q~ 36 (715) T 2va8_A 16 PSNVIEIIKKRGIKKLNPPQT 36 (715) T ss_dssp CHHHHHHHHTTSCCBCCHHHH T ss_pred CHHHHHHHHHCCCCCCCHHHH T ss_conf 999999999769999999999 No 110 >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Probab=53.93 E-value=5.8 Score=18.74 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHC---CCEEEECCCCHHH-HHHHHHCCCCC Q ss_conf 8777877667766434---9631312431466-65765197545 Q gi|254780479|r 124 PGIGDYTASAIVAIAF---NHFAVVVDTNIER-IISRYFDIIKP 163 (356) Q Consensus 124 pGiG~yta~ai~s~a~---~~~~~~vD~Nv~R-Vl~R~~~~~~~ 163 (356) .|||..|-++-++.++ |+++.+||.++.. -+..++++... T Consensus 28 GGvGKTT~a~NLA~aLA~~GkkVllvD~D~~~~~~~~~~g~~~~ 71 (262) T 2ph1_A 28 GGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNA 71 (262) T ss_dssp SCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSC T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC T ss_conf 98879999999999999779925764787788854210355533 No 111 >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Probab=53.13 E-value=6.2 Score=18.49 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHHC---CCEEEECCCCHHH-HHHHHHCCCCC Q ss_conf 888777877667766434---9631312431466-65765197545 Q gi|254780479|r 122 KLPGIGDYTASAIVAIAF---NHFAVVVDTNIER-IISRYFDIIKP 163 (356) Q Consensus 122 ~LpGiG~yta~ai~s~a~---~~~~~~vD~Nv~R-Vl~R~~~~~~~ 163 (356) ..||+|..|-++=++.++ |+++.+||++..+ -++++|+++.. T Consensus 112 ~~~G~GKTtva~nLA~~lA~~GkrVLLID~D~r~~~l~~~~~~~~~ 157 (299) T 3cio_A 112 ATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE 157 (299) T ss_dssp SSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCS T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCCC T ss_conf 9999988999999999999779968999169899870222034678 No 112 >1viu_A ADP-ribose pyrophosphatase; structural genomics, hydrolase; 2.40A {Escherichia coli} SCOP: d.113.1.1 Probab=52.79 E-value=11 Score=16.80 Aligned_cols=89 Identities=7% Similarity=-0.032 Sum_probs=43.3 Q ss_pred CCCEEEEEE--CCCCHH----HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEEE------EEEEEEEEEE Q ss_conf 376057764--572013----2047442111134672158886301010000213735899831------5999999999 Q gi|254780479|r 248 NDNRILLRK--RTNTRL----LEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFTH------FTLTLFVWKT 315 (356) Q Consensus 248 ~~~kiLL~K--Rp~~gl----l~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fTH------~~L~i~v~~~ 315 (356) .+++++|.+ |+.-.+ =.-+||||.+..+.++.. .....+..++..-..+.+.+..+- -+-.+++|.+ T Consensus 58 ~~~~vlLvrQfR~~~~~~~~~~~~~~ElPaG~id~eep~-~aA~REL~EETG~~~~~l~~l~~~~~spG~s~~~~~~f~a 136 (203) T 1viu_A 58 KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPE-VCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIA 136 (203) T ss_dssp TTTEEEEEEEECHHHHTTTCSSCEEEECEEEECTTSCHH-HHHHHHHHHHHSCCCCCCEEEEEEESCTTTBCCEEEEEEE T ss_pred CCCEEEEEEEECCCEECCCCCCCEEEEEEEEECCCCCHH-HHHHHHHHHHHCCCCCEEEECCEECCCCCCCCCEEEEEEE T ss_conf 899999999731652226887777999413605899979-9999998776478542489923274688423742589999 Q ss_pred ECCCCC--C--------CCCCEEECHHHHHHC Q ss_conf 807767--6--------678133227888747 Q gi|254780479|r 316 IVPQIV--I--------IPDSTWHDAQNLANA 337 (356) Q Consensus 316 ~~~~~~--~--------~~~~~Wv~~~el~~~ 337 (356) .+.... . .-+..|++.+++.++ T Consensus 137 ~~~~~~~~~~~~~de~E~Iev~~~~~~e~~~~ 168 (203) T 1viu_A 137 EYSDNQRANAGGGVEDEDIEVLELPFSQALEM 168 (203) T ss_dssp ECCTTCC---------CCEEEEEEEHHHHHHH T ss_pred EECCCCCCCCCCCCCCCCEEEEEEEHHHHHHH T ss_conf 98750044578999997279999989999999 No 113 >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A* Probab=48.34 E-value=2.6 Score=21.11 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=26.3 Q ss_pred HHHHHH-CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 998774-899789872998999999740463458899987767543 Q gi|254780479|r 62 KKFMQK-WPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIV 106 (356) Q Consensus 62 ~~~~~~-~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~ 106 (356) ++..+. |-|+++|+.++.+|+.+. .|+.| ..|..+...++.++ T Consensus 17 ~kL~~ag~~t~~~l~~~~~~~l~~~-~~~~~-~~~~~i~~~~~~~~ 60 (322) T 2i1q_A 17 EKLVEAGYIDFMKIATATVGELTDI-EGISE-KAAAKMIMGARDLC 60 (322) T ss_dssp HHHHHHTCCSHHHHHTCCHHHHHTS-TTCCH-HHHHHHHHHHHHHT T ss_pred HHHHHCCCCCHHHHHCCCHHHHHHH-HCCCH-HHHHHHHHHHHHHH T ss_conf 9999869960999973999999987-49999-99999999999873 No 114 >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Probab=47.15 E-value=12 Score=16.38 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=29.3 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999997404634588999877675430057868731456888887778776677664 Q gi|254780479|r 81 EILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 81 ~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~ 137 (356) .+|...+||| -+.|.+|.+.-+ . +|.| .+.++|++.+|+|+.+---.++| T Consensus 508 ~lL~~VsGLg-prkA~~iv~~r~----~-~g~f-~~R~~L~~v~~lG~k~F~q~AgF 557 (785) T 3bzc_A 508 ALLARISGLN-STLAQNIVAHRD----A-NGAF-RTRDELKKVSRLGEKTFEQAAGF 557 (785) T ss_dssp HHHHTSTTCC-HHHHHHHHHHHH----H-HCCC-SSGGGGGGSTTCCHHHHHHHGGG T ss_pred HHHHCCCCCC-HHHHHHHHHHHH----H-CCCC-CCHHHHHHCCCCCHHHHHHCCEE T ss_conf 7753257878-899999999999----5-7995-77999973678660217652567 No 115 >1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1 Probab=47.00 E-value=3.7 Score=20.12 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=18.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6873145688888777877667 Q gi|254780479|r 112 NFPHKVEILKKLPGIGDYTASA 133 (356) Q Consensus 112 ~~P~~~~~l~~LpGiG~yta~a 133 (356) ..|.|.++|.+++|||+..+.- T Consensus 42 ~~P~t~~eL~~I~Gvg~~k~~k 63 (81) T 1d8b_A 42 ILPMNDSAFATLGTVEDKYRRR 63 (81) T ss_dssp HCCCSHHHHGGGSCCCHHHHHH T ss_pred HCCCCHHHHCCCCCCCHHHHHH T ss_conf 6899999982799999899999 No 116 >1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A Probab=46.69 E-value=6.5 Score=18.35 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHH Q ss_conf 877787766776 Q gi|254780479|r 124 PGIGDYTASAIV 135 (356) Q Consensus 124 pGiG~yta~ai~ 135 (356) ||||+.||..++ T Consensus 209 ~GiG~KtA~kLl 220 (290) T 1exn_A 209 EGIGAKRGYNII 220 (290) T ss_dssp TTCCHHHHHHHH T ss_pred CCCCHHHHHHHH T ss_conf 985899999999 No 117 >2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase, nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans R1} Probab=46.29 E-value=3.6 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=18.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHH Q ss_conf 687314568888877787766 Q gi|254780479|r 112 NFPHKVEILKKLPGIGDYTAS 132 (356) Q Consensus 112 ~~P~~~~~l~~LpGiG~yta~ 132 (356) ..|.|.++|..++|||+..+. T Consensus 41 ~~P~t~~eL~~I~Gig~~k~~ 61 (77) T 2rhf_A 41 RQPRTLAELAEVPGLGEKRIE 61 (77) T ss_dssp HCCCSHHHHTTSTTTCHHHHH T ss_pred HCCCCHHHHHCCCCCCHHHHH T ss_conf 397899998079997999999 No 118 >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Probab=45.86 E-value=9.3 Score=17.26 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=37.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEECCCCHHH-HHHHHHCCCCCC Q ss_conf 6873145688888777877667766434---9631312431466-657651975457 Q gi|254780479|r 112 NFPHKVEILKKLPGIGDYTASAIVAIAF---NHFAVVVDTNIER-IISRYFDIIKPA 164 (356) Q Consensus 112 ~~P~~~~~l~~LpGiG~yta~ai~s~a~---~~~~~~vD~Nv~R-Vl~R~~~~~~~~ 164 (356) .-|+..---=..||+|..|-++=++.++ |+++..||++..| .++++++++... T Consensus 90 ~~~kvi~VtS~~~G~GKTtia~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~ 146 (286) T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN 146 (286) T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTT T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC T ss_conf 998189997799999889999999999997799189983688899610036653335 No 119 >3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A Probab=45.42 E-value=5 Score=19.18 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 45688888777877667766434963131243146665765197545735689998741 Q gi|254780479|r 117 VEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYA 175 (356) Q Consensus 117 ~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~ 175 (356) -.+|..||+||+-++.....++...+.-..+.+....+.|+-....+. ....+|.+. T Consensus 3 m~~L~~LPNig~~~e~~L~~iGI~~~~~L~~~ga~~~y~rLk~~~~~~--~~~~L~aL~ 59 (93) T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSV--CMSELYALE 59 (93) T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTC--CHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCCC--CHHHHHHHH T ss_conf 677724899999999999993999899998679999999999868996--099999999 No 120 >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Probab=43.50 E-value=4 Score=19.83 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=45.1 Q ss_pred HHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------CCCCCCCC-H Q ss_conf 748997898729989999997404634588999877675430----------------------------05786873-1 Q gi|254780479|r 66 QKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVK----------------------------KYEGNFPH-K 116 (356) Q Consensus 66 ~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~----------------------------~~~g~~P~-~ 116 (356) ..|=|+++|+.++.+++.+. .||.| ..|+.+...|+..+. -.+|.+|. . T Consensus 31 ~g~~t~~~l~~~~~~~L~~~-~gls~-~~a~kil~~a~~~~~~~~~ta~~l~~~~~~~~~isTG~~~LD~lLgGGi~~G~ 108 (324) T 2z43_A 31 AGYSSLETLAVASPQDLSVA-AGIPL-STAQKIIKEARDALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRT 108 (324) T ss_dssp -------------------------------------------CCCCHHHHHHHHCSCCEECCSCHHHHHHTTTSEETTS T ss_pred CCCCCHHHHHCCCHHHHHHH-HCCCH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEECCCCHHHCCCCCCCCCCCE T ss_conf 69961999971899999987-49899-99999999998742578863999999751797278896775567789741787 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------CCCEEEECCCC Q ss_conf 4568888877787766776643---------49631312431 Q gi|254780479|r 117 VEILKKLPGIGDYTASAIVAIA---------FNHFAVVVDTN 149 (356) Q Consensus 117 ~~~l~~LpGiG~yta~ai~s~a---------~~~~~~~vD~N 149 (356) .-++---||.|..+-+.-++.. .+..+.-+|+. T Consensus 109 itei~G~~GsGKT~l~l~l~~~~~~~~~~gg~~~~vvyidtE 150 (324) T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324) T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 999875888880479999999975479748988649999743 No 121 >2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics, NPPSFA; 2.00A {Thermotoga maritima MSB8} Probab=41.60 E-value=8.1 Score=17.68 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=18.1 Q ss_pred HHHHHHHHCCCHHHHHCCCHHHHHHHHH Q ss_conf 5899877489978987299899999974 Q gi|254780479|r 60 YFKKFMQKWPTIFCLSSAKDEEILSAWA 87 (356) Q Consensus 60 ~~~~~~~~~P~~~~la~a~~~~vl~~w~ 87 (356) .-.+|+.|+|-+..=..++.+++.+.|+ T Consensus 83 ~~~K~irRhPhVf~~~~~s~ee~~~~We 110 (116) T 2yxh_A 83 VVEKISHRKPWLFWEEKISLEEAEKIWK 110 (116) T ss_dssp HHHHHHHHCGGGGCSSCCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 9999986586545888899999999999 No 122 >2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens} Probab=41.08 E-value=5.1 Score=19.13 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=18.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHH Q ss_conf 687314568888877787766 Q gi|254780479|r 112 NFPHKVEILKKLPGIGDYTAS 132 (356) Q Consensus 112 ~~P~~~~~l~~LpGiG~yta~ 132 (356) ..|.|.++|..++|||++.+. T Consensus 58 ~~P~t~~eL~~I~Gv~~~k~~ 78 (101) T 2rrd_A 58 SLSSDPEVLLQIDGVTEDKLE 78 (101) T ss_dssp HCCCCHHHHHTSTTCCHHHHH T ss_pred HCCCCHHHHHCCCCCCHHHHH T ss_conf 685999998267787999999 No 123 >2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M 3jyv_M* Probab=40.89 E-value=7.4 Score=17.96 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=22.6 Q ss_pred HHCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHH Q ss_conf 300578687314---568888877787766776643 Q gi|254780479|r 106 VKKYEGNFPHKV---EILKKLPGIGDYTASAIVAIA 138 (356) Q Consensus 106 ~~~~~g~~P~~~---~~l~~LpGiG~yta~ai~s~a 138 (356) +-=.|-.+|.+. -.|..+-|||+.+|.+|+..+ T Consensus 13 vRI~g~dI~g~K~v~~aLt~I~GIG~~~A~~Ic~~l 48 (152) T 2zkq_m 13 LRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKA 48 (152) T ss_dssp CCCSTTCCCCSSBHHHHGGGSTTCCHHHHHHHHHHH T ss_pred HHEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH T ss_conf 413285279997887650021065899999999993 No 124 >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Probab=39.12 E-value=7.9 Score=17.75 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCCC Q ss_conf 777877667766434---963131243146665765197545 Q gi|254780479|r 125 GIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIKP 163 (356) Q Consensus 125 GiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~~ 163 (356) |||..|..+=++.+. |.++.+||....+-++..++...+ T Consensus 47 GvGKTT~a~nlA~~LA~~G~rVllID~D~q~~lt~~l~~~~~ 88 (298) T 2oze_A 47 GVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFK 88 (298) T ss_dssp SSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSC T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCC T ss_conf 818999999999999977990899946878886566464334 No 125 >1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 Probab=38.07 E-value=6.1 Score=18.58 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHH Q ss_conf 687314568888877787766 Q gi|254780479|r 112 NFPHKVEILKKLPGIGDYTAS 132 (356) Q Consensus 112 ~~P~~~~~l~~LpGiG~yta~ 132 (356) ..|.+.++|..++|||+..+. T Consensus 49 ~~P~t~~eL~~I~Gvg~~k~~ 69 (89) T 1wud_A 49 QMPITASEMLSVNGVGMRKLE 69 (89) T ss_dssp HCCCSHHHHHTSTTCCHHHHH T ss_pred HCCCCHHHHCCCCCCCHHHHH T ss_conf 788999998079998999999 No 126 >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Probab=37.48 E-value=9.8 Score=17.11 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=4.0 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999962 Q gi|254780479|r 8 IQSKILDWYDTN 19 (356) Q Consensus 8 ~~~~ll~w~~~~ 19 (356) +...++.=+.+- T Consensus 10 l~~~~~~~l~~~ 21 (702) T 2p6r_A 10 ISSYAVGILKEE 21 (702) T ss_dssp HHHHHHHHHHCC T ss_pred HCHHHHHHHHHC T ss_conf 369999999977 No 127 >2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A Probab=36.36 E-value=5.8 Score=18.71 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=5.6 Q ss_pred CCCC-CCCCCCC Q ss_conf 2899-8875485 Q gi|254780479|r 19 NHRV-LPWRTSP 29 (356) Q Consensus 19 ~~R~-lpwr~~~ 29 (356) .+|. .+||-.| T Consensus 4 ~~~~~~~~~~~p 15 (311) T 2ziu_A 4 TGRTAMGWHLSP 15 (311) T ss_dssp ------CCCBCT T ss_pred CCCCCCCCCCCC T ss_conf 665366633389 No 128 >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Probab=36.36 E-value=17 Score=15.37 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCC Q ss_conf 8777877667766434---96313124314666576519754 Q gi|254780479|r 124 PGIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIK 162 (356) Q Consensus 124 pGiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~ 162 (356) .|||..|.++=++..+ |.++.+||.....=++.+++++. T Consensus 9 GGvGKTt~a~~lA~~la~~g~~VlliD~D~~~~l~~~lg~~~ 50 (254) T 3kjh_A 9 GGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSI 50 (254) T ss_dssp SSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCH T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCC T ss_conf 822799999999999996899689997899969688829875 No 129 >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A* Probab=35.97 E-value=12 Score=16.42 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCC Q ss_conf 5688888777877667766434963131243 Q gi|254780479|r 118 EILKKLPGIGDYTASAIVAIAFNHFAVVVDT 148 (356) Q Consensus 118 ~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~ 148 (356) +++..+..+..+...++....-+-...++|+ T Consensus 137 ~e~~~l~~~~~~l~~~~~~~~~~yD~IviDt 167 (354) T 2woj_A 137 DEALSFMEVMKHIKRQEQGEGETFDTVIFDT 167 (354) T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCSEEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 7788699999999997753324677465348 No 130 >1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1 Probab=35.12 E-value=15 Score=15.82 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 88999877675430057868731456888 Q gi|254780479|r 94 RARNLKKCADIIVKKYEGNFPHKVEILKK 122 (356) Q Consensus 94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~ 122 (356) |-+.+.++|+.|+++|...|-.|++.=.. T Consensus 5 r~k~iKr~a~~lieky~~~ft~DF~~NK~ 33 (62) T 1rq6_A 5 RTSFVKRIAKEMIETHPGKFTDDFDTNKK 33 (62) T ss_dssp CCHHHHHHHHHHHTTSCCCCCCCHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCHHCCCHHHHHH T ss_conf 41799999999999871540478889889 No 131 >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Probab=33.76 E-value=21 Score=14.80 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=29.0 Q ss_pred HHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCCCC Q ss_conf 777877667766434---9631312431466657651975457 Q gi|254780479|r 125 GIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIKPA 164 (356) Q Consensus 125 GiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~~~ 164 (356) |||..|-++=++.++ |.++.++|.+..--+..+++..... T Consensus 17 GvGKTTia~nlA~~La~~g~~VllID~D~q~~~~~~l~~~~~~ 59 (257) T 1wcv_1 17 GVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAER 59 (257) T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCCSC T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC T ss_conf 8769999999999999779988999648999833331676433 No 132 >3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} Probab=32.84 E-value=11 Score=16.77 Aligned_cols=49 Identities=20% Similarity=0.118 Sum_probs=35.1 Q ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 404634588999877675430057868731456888887778776677664 Q gi|254780479|r 87 AGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI 137 (356) Q Consensus 87 ~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~ 137 (356) +-|+.-.|++|-.+.+.+.-- +--+-.+.++|+.+||+|+.+..-|-.+ T Consensus 19 ~~L~LS~R~~n~L~~~gI~tv--~dL~~~s~~dLl~i~n~G~kSl~EI~~~ 67 (79) T 3gfk_B 19 EELDLSVRSYNCLKRAGINTV--QELANKTEEDMMKVRNLGRKSLEEVKAK 67 (79) T ss_dssp GGSCCBHHHHHHHHHTTCCBH--HHHTTCCHHHHTTSTTCHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHCCCCCH--HHHHHCCHHHHHHCCCCCHHHHHHHHHH T ss_conf 984798999999989289679--9998688999975789867379999999 No 133 >2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... Probab=30.36 E-value=6.4 Score=18.42 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=19.9 Q ss_pred CCCCHH---HHHHHHHHHHHHHHHHHHHHH Q ss_conf 687314---568888877787766776643 Q gi|254780479|r 112 NFPHKV---EILKKLPGIGDYTASAIVAIA 138 (356) Q Consensus 112 ~~P~~~---~~l~~LpGiG~yta~ai~s~a 138 (356) .+|.+. -.|..+-|||+.+|.+|+..+ T Consensus 8 ~i~~~K~v~~aLt~I~GIG~~~A~~Ic~~l 37 (126) T 2vqe_M 8 EIPRNKRVDVALTYIYGIGKARAKEALEKT 37 (126) T ss_dssp CCCCSSBHHHHHTTSSSCCSHHHHHHTTTT T ss_pred CCCCCCEEEEEECCEECCCHHHHHHHHHHC T ss_conf 489997878762043483899999999985 No 134 >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular modeling; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Probab=29.69 E-value=24 Score=14.34 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=32.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 046345889998776754300578687314568888877787766776 Q gi|254780479|r 88 GLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIV 135 (356) Q Consensus 88 gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~ 135 (356) ..||. .|.+....+|.|+.. .+| +-..|+.||+||+..+..+. T Consensus 132 ~~~~~-~a~~~l~l~q~i~q~---~w~-~~~~L~Qlp~i~~~~~~~l~ 174 (328) T 3im1_A 132 ANGYL-NATTAMDLAQMLIQG---VWD-VDNPLRQIPHFNNKILEKCK 174 (328) T ss_dssp HTTBT-THHHHHHHHHHHHHT---SCT-TSCGGGGSTTCCHHHHHHHH T ss_pred CCCHH-HHHHHHHHHHHHHHH---CCC-CCCHHHHHHHCCHHHHHHHH T ss_conf 16879-999999999998865---589-98666766207999999999 No 135 >2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A Probab=28.13 E-value=15 Score=15.90 Aligned_cols=100 Identities=20% Similarity=0.339 Sum_probs=49.8 Q ss_pred HHHHHHH--HHHHHHCCHHHCCH----HHHHHHHHCCCHHHHHCCCHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 0467664--46731161203326----58998774899789872998999999--7404634588999877675430057 Q gi|254780479|r 39 PYKVWIS--EIMLQQTTVKTVEP----YFKKFMQKWPTIFCLSSAKDEEILSA--WAGLGYYTRARNLKKCADIIVKKYE 110 (356) Q Consensus 39 py~v~vs--eimlqqT~v~~v~~----~~~~~~~~~P~~~~la~a~~~~vl~~--w~gLGyy~Rar~l~~~a~~i~~~~~ 110 (356) -|+|+|- -+-|--.+|+.|-| -|++.+++|.-+-+-..-..-++|.. |..- ---||+|--....+. | T Consensus 142 lyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtph--deiarrlglsvseve---g 216 (519) T 2csb_A 142 LYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPH--DEIARRLGLSVSEVE---G 216 (519) T ss_dssp HHHHHHHTTCTTTSCSSGGGCCGGGTTTTHHHHHHTTCCCCHHHHHHHHHHHHCTTCCH--HHHHHHHTCCHHHHH---C T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH--HHHHHHHCCCHHHHC---C T ss_conf 99999996552303300054895550179999997179977378999999960899972--899998488533413---7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHH Q ss_conf 868731456888887778776677664349631312431466 Q gi|254780479|r 111 GNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIER 152 (356) Q Consensus 111 g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~R 152 (356) .+=|++ .||-.--+..+..|.|++..+ .-+|+| T Consensus 217 ekdpes-------sgiyslwsrvvvnieyderta--krhvkr 249 (519) T 2csb_A 217 EKDPES-------SGIYSLWSRVVVNIEYDERTA--KRHVKR 249 (519) T ss_dssp CSSSSS-------CSHHHHHHHHHTTSCCCHHHH--HHHHHH T ss_pred CCCCCC-------CCHHHHHHHHEEEEEECHHHH--HHHHHH T ss_conf 779420-------118887666347533235678--888778 No 136 >2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753} Probab=27.92 E-value=17 Score=15.45 Aligned_cols=88 Identities=10% Similarity=0.104 Sum_probs=38.4 Q ss_pred HHHHHHHHHHHHH---CCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHC--CCCC Q ss_conf 0467664467311---6120332658998774899789872998999999740463-45889998776754300--5786 Q gi|254780479|r 39 PYKVWISEIMLQQ---TTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGY-YTRARNLKKCADIIVKK--YEGN 112 (356) Q Consensus 39 py~v~vseimlqq---T~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGy-y~Rar~l~~~a~~i~~~--~~g~ 112 (356) -+..|+.+-..+. ++..+...+|++++.-|.+. .|.+-+..+|.....++++ ++-+++.+..-+.+.+. -.|. T Consensus 7 ~~~~wl~~~~~~~~~~~T~~~~~~~~~~~~~~lg~~-~l~~It~~~i~~~l~~~~~s~~t~~~~~~~l~~~f~~Av~~~~ 85 (108) T 2kob_A 7 WAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMK-SLSEILPADIQSIINETKLAKNTLKAIRNTASQIFRLAIENRA 85 (108) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHTSHHHHTS-BGGGCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTS T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999974728989999999999999999998688-1999878899999987332668999999999999999998888 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 873145688888777 Q gi|254780479|r 113 FPHKVEILKKLPGIG 127 (356) Q Consensus 113 ~P~~~~~l~~LpGiG 127 (356) ++.+..+-+++|=++ T Consensus 86 i~~NP~~~vk~Pk~~ 100 (108) T 2kob_A 86 IDFNPADYVRIPKIA 100 (108) T ss_dssp SSSCGGGTCCCCCCC T ss_pred CCCCHHHCCCCCCCC T ss_conf 022916238689998 No 137 >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Probab=27.46 E-value=26 Score=14.08 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHH---CCCEEEECCCCHH-HHHHHHHCCC Q ss_conf 77787766776643---4963131243146-6657651975 Q gi|254780479|r 125 GIGDYTASAIVAIA---FNHFAVVVDTNIE-RIISRYFDII 161 (356) Q Consensus 125 GiG~yta~ai~s~a---~~~~~~~vD~Nv~-RVl~R~~~~~ 161 (356) |||..|.++=++.+ .|.++.++|.+.. ..++.++|++ T Consensus 13 GvGKTtia~nlA~~la~~g~kVlliD~D~~~~~~~~~lg~~ 53 (263) T 1hyq_A 13 GTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGME 53 (263) T ss_dssp CSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCC T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC T ss_conf 87199999999999996899899995889989878981987 No 138 >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Probab=26.77 E-value=27 Score=14.00 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCC Q ss_conf 8777877667766434---9631312431466657651975 Q gi|254780479|r 124 PGIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDII 161 (356) Q Consensus 124 pGiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~ 161 (356) =|||..|.+|-++.++ |.++.+||.....=++.++|++ T Consensus 25 GGVGKTT~aanlA~~lA~~G~rVLlvD~Dpq~~ls~~lg~~ 65 (334) T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQK 65 (334) T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSC T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCC T ss_conf 97719999999999999789948999389998878871987 No 139 >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Probab=25.57 E-value=5.1 Score=19.08 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=20.1 Q ss_pred HCCCCCCCCHHHHHHHH-----------HHHHHHHHHHHHHH Q ss_conf 00578687314568888-----------87778776677664 Q gi|254780479|r 107 KKYEGNFPHKVEILKKL-----------PGIGDYTASAIVAI 137 (356) Q Consensus 107 ~~~~g~~P~~~~~l~~L-----------pGiG~yta~ai~s~ 137 (356) ++| |.-|+.+-++++| ||||+.||..++.- T Consensus 170 ~~~-gv~p~~~~d~~~l~GD~sDnipGv~giG~ktA~~ll~~ 210 (832) T 1bgx_T 170 EKY-GLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEE 210 (832) T ss_dssp HHT-CCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGG T ss_pred HHH-CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 997-77962677788870875457888665574779999861 No 140 >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Probab=24.86 E-value=6.8 Score=18.20 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=6.9 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 8888877787766776 Q gi|254780479|r 120 LKKLPGIGDYTASAIV 135 (356) Q Consensus 120 l~~LpGiG~yta~ai~ 135 (356) +..|+|||+.+|.+.. T Consensus 117 i~~lkGVGpk~a~~L~ 132 (780) T 1gm5_A 117 IQYAKGVGPNRKKKLK 132 (780) T ss_dssp SSSSSSCCHHHHHHHH T ss_pred CCCCCCCCHHHHHHHH T ss_conf 6017881599999999 No 141 >3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29} Probab=24.44 E-value=10 Score=16.99 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=20.6 Q ss_pred HHHHHCCHHHCCHHHHHHHHHCCCHHH-HHCCCHH Q ss_conf 673116120332658998774899789-8729989 Q gi|254780479|r 47 IMLQQTTVKTVEPYFKKFMQKWPTIFC-LSSAKDE 80 (356) Q Consensus 47 imlqqT~v~~v~~~~~~~~~~~P~~~~-la~a~~~ 80 (356) -.|||-||+ |-.|++.|-++++ +|.|.+| T Consensus 30 e~lqqlr~~-----ygs~~se~dDLeEkla~aKeE 59 (77) T 3mtu_E 30 EALQQLRVN-----YGSFVSEYNDLEEKVAHAKEE 59 (77) T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH T ss_conf 999999988-----757989986899999998876 No 142 >2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A Probab=24.04 E-value=13 Score=16.32 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH Q ss_conf 8687314568888877787766 Q gi|254780479|r 111 GNFPHKVEILKKLPGIGDYTAS 132 (356) Q Consensus 111 g~~P~~~~~l~~LpGiG~yta~ 132 (356) ...|.|.++|..++|||...+. T Consensus 50 ~~~P~t~~eL~~I~G~g~~k~~ 71 (103) T 2e1f_A 50 KMRPTTVENVKRIDGVSEGKAA 71 (103) T ss_dssp HHCCCSHHHHTTSTTCCHHHHH T ss_pred HHCCCCHHHHHCCCCCCHHHHH T ss_conf 8789999999378998999999 No 143 >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* Probab=23.37 E-value=31 Score=13.57 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEE-C-CCCHHHHHHHHHCC Q ss_conf 88888777877667766434963131-2-43146665765197 Q gi|254780479|r 120 LKKLPGIGDYTASAIVAIAFNHFAVV-V-DTNIERIISRYFDI 160 (356) Q Consensus 120 l~~LpGiG~yta~ai~s~a~~~~~~~-v-D~Nv~RVl~R~~~~ 160 (356) +..|||||+.|+..+.+..+|..... + +..-...|.+.||. T Consensus 243 v~~LpGIG~~~~~kL~~~~~Gi~ti~DL~~~~~~~~L~~~fG~ 285 (434) T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGS 285 (434) T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCS T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEHHHHHHHCCHHHHHHHHCC T ss_conf 2106686789999999876588079997632829899999674 No 144 >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} Probab=22.80 E-value=15 Score=15.90 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=10.6 Q ss_pred CCCCHHHHHHHHHCCCC Q ss_conf 24314666576519754 Q gi|254780479|r 146 VDTNIERIISRYFDIIK 162 (356) Q Consensus 146 vD~Nv~RVl~R~~~~~~ 162 (356) .||--.+=..|-|.+.. T Consensus 38 ~~g~~~K~~YR~f~ik~ 54 (226) T 3c65_A 38 LDGKPAKKEYRKYKVKT 54 (226) T ss_dssp ETTEECGGGCEEEECCC T ss_pred ECCCCCHHHCCCCCCCC T ss_conf 78953867660226567 No 145 >3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} Probab=22.50 E-value=32 Score=13.46 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=33.2 Q ss_pred HHHHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCCCCC Q ss_conf 88777877667766434---96313124314666576519754573 Q gi|254780479|r 123 LPGIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIKPAP 165 (356) Q Consensus 123 LpGiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~~~~ 165 (356) --|+|..|-++-++.++ |.++..||.+-..=++.+|+.+.... T Consensus 152 kGGvGKTT~A~~LA~~LA~~g~kVLliD~D~~~~~~~~l~~~~~~~ 197 (373) T 3fkq_A 152 CGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNAT 197 (373) T ss_dssp STTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCC T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCCC T ss_conf 9995199999999999983899599993899999689729988987 No 146 >1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B Probab=22.01 E-value=14 Score=15.94 Aligned_cols=48 Identities=21% Similarity=0.139 Sum_probs=33.0 Q ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 40463458899987767543005786873145688888777877667766 Q gi|254780479|r 87 AGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVA 136 (356) Q Consensus 87 ~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s 136 (356) +-|+.-.|+.|-.+.+.+.- .+--+--+.++|+.+||+|+.+-.-|-. T Consensus 12 ~~L~LS~R~~N~L~~~~I~t--v~dL~~~s~~dLl~i~n~G~kSl~EI~~ 59 (73) T 1z3e_B 12 EELDLSVRSYNCLKRAGINT--VQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73) T ss_dssp GGSCCBHHHHHHHHHTTCCB--HHHHHTSCHHHHHTSTTCCHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHCCCCC--HHHHHHCCHHHHHHCCCCCHHHHHHHHH T ss_conf 88469899999998948967--9999868999997478986605999999 No 147 >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Probab=21.94 E-value=22 Score=14.67 Aligned_cols=37 Identities=27% Similarity=0.187 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCC Q ss_conf 88888777877667766434963131243146665765197 Q gi|254780479|r 120 LKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDI 160 (356) Q Consensus 120 l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~ 160 (356) |.-+||+|..|-+-.+|-.+|.+..=+| +++.+.+|. T Consensus 7 l~G~~GsGKSTiak~La~~L~~~~iD~D----~~ie~~~g~ 43 (184) T 2iyv_A 7 LVGLPGSGKSTIGRRLAKALGVGLLDTD----VAIEQRTGR 43 (184) T ss_dssp EECSTTSSHHHHHHHHHHHHTCCEEEHH----HHHHHHHSS T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEECC----HHHHHHHCC T ss_conf 9879999889999999999698968388----789987548 No 148 >2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A Probab=21.61 E-value=34 Score=13.34 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=16.5 Q ss_pred ECHHHHHHCC-CCHHHHHHHHHCC Q ss_conf 2278887479-9878999998448 Q gi|254780479|r 329 HDAQNLANAA-LPTVMKKALSAGG 351 (356) Q Consensus 329 v~~~el~~~~-LPs~~kKIL~alg 351 (356) .+.+||.+++ .++.-++|.+.+| T Consensus 197 As~eeL~~v~g~~k~A~~I~~~l~ 220 (220) T 2nrt_A 197 ASLEEIARVIGSTEIARRVLDILG 220 (220) T ss_dssp SCHHHHHHHHTCHHHHHHHHHHC- T ss_pred CCHHHHHHCCCCHHHHHHHHHHHC T ss_conf 899999868695999999999719 No 149 >2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Probab=21.09 E-value=34 Score=13.26 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=43.9 Q ss_pred HHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 11612033265899877489978987299899999974046345889998776754300578687314568888877787 Q gi|254780479|r 50 QQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDY 129 (356) Q Consensus 50 qqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~y 129 (356) ...++...+.|+.||+.+.+-.. +++ .-+-.+|=.|..++....|-..+++..+-+ |.| T Consensus 74 ~~et~~lAv~~lDRfl~~~~v~~-------~~l-------------qLia~acL~IAsK~ee~~~~~~~~l~~~~~-~~~ 132 (271) T 2w96_A 74 EEEVFPLAMNYLDRFLSLEPVKK-------SRL-------------QLLGATCMFVASKMKETIPLTAEKLCIYTD-NSI 132 (271) T ss_dssp CTTHHHHHHHHHHHHHTTSCCCT-------TTH-------------HHHHHHHHHHHHHHHCSSCCCHHHHHHHTT-TSS T ss_pred CHHHHHHHHHHHHHHHCCCCCCH-------HHH-------------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCC T ss_conf 88899999999999856786667-------899-------------999999999999634577996999999963-889 Q ss_pred HHHHHHH--------HHCCCEEEECCCCHHH Q ss_conf 7667766--------4349631312431466 Q gi|254780479|r 130 TASAIVA--------IAFNHFAVVVDTNIER 152 (356) Q Consensus 130 ta~ai~s--------~a~~~~~~~vD~Nv~R 152 (356) |...|.. +.|+...|....-+.+ T Consensus 133 t~~~i~~mE~~IL~~L~f~l~~pTp~~fl~~ 163 (271) T 2w96_A 133 RPEELLQMELLLVNKLKWNLAAMTPHDFIEH 163 (271) T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 8999999999999981888889985999999 Done!