Query         gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 356
No_of_seqs    257 out of 2961
Neff          6.9 
Searched_HMMs 23785
Date          Mon May 30 12:34:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780479.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3fsp_A A/G-specific adenine gl 100.0       0       0  757.8  28.9  339    4-350    12-358 (369)
  2 3n5n_X A/G-specific adenine DN 100.0       0       0  639.8  13.7  268    5-274    15-285 (287)
  3 1kg2_A A/G-specific adenine gl 100.0       0       0  481.6  18.2  221    4-232     2-225 (225)
  4 1kea_A Possible G-T mismatches 100.0       0       0  472.6  16.7  213    2-222     6-220 (221)
  5 1orn_A Endonuclease III; DNA r 100.0       0       0  445.9  16.7  207    4-223     9-216 (226)
  6 2abk_A Endonuclease III; DNA-r 100.0       0       0  409.5  15.5  202    8-220     6-208 (211)
  7 1pu6_A 3-methyladenine DNA gly 100.0 8.4E-36 3.5E-40  271.2   9.6  171   20-202    17-217 (218)
  8 1ngn_A Methyl-CPG binding prot  99.9 3.3E-28 1.4E-32  217.7   7.5  131   23-160    14-148 (155)
  9 3fhf_A Mjogg, N-glycosylase/DN  99.9 2.6E-28 1.1E-32  218.4   5.3  169    8-194    25-202 (214)
 10 1x51_A A/G-specific adenine DN  99.9 4.2E-22 1.8E-26  174.7  10.1  131  222-352     3-148 (155)
 11 3fhg_A Mjogg, N-glycosylase/DN  99.8 1.6E-21 6.9E-26  170.5   4.2  173    7-194    10-195 (207)
 12 1m3q_A 8-oxoguanine DNA glycos  99.7 1.8E-17 7.6E-22  142.0   7.2  124   37-163   127-276 (317)
 13 3i0w_A 8-oxoguanine-DNA-glycos  99.6 8.4E-16 3.5E-20  130.3   7.2  123   37-163   113-257 (290)
 14 2jhn_A ALKA, 3-methyladenine D  99.6 6.1E-15 2.6E-19  124.2  10.8  160   37-203   116-293 (295)
 15 3ees_A Probable pyrophosphohyd  99.5 4.2E-13 1.8E-17  111.2   9.8  113  241-353    24-150 (153)
 16 2h56_A DNA-3-methyladenine gly  99.3 6.4E-12 2.7E-16  103.0  10.3  140   37-181    49-201 (233)
 17 3hhj_A Mutator MUTT protein; n  99.3 1.8E-11 7.7E-16   99.7   8.6  127  223-350    15-153 (158)
 18 1mut_A MUTT, nucleoside tripho  99.1 1.8E-11 7.5E-16   99.8   4.0  111  240-350     6-126 (129)
 19 1mpg_A ALKA, 3-methyladenine D  99.1 3.9E-10 1.6E-14   90.4  10.4  134   35-181   109-263 (282)
 20 3gwy_A Putative CTP pyrophosph  99.1 4.2E-10 1.8E-14   90.2   8.1  108  244-351    11-130 (140)
 21 3grn_A MUTT related protein; s  98.8 5.2E-08 2.2E-12   75.4   9.9  115  236-350     6-133 (153)
 22 3oga_A Nucleoside triphosphata  98.7 1.1E-07 4.7E-12   73.0   9.7  111  242-352    31-164 (165)
 23 3fk9_A Mutator MUTT protein; s  98.1 2.7E-05 1.1E-09   56.3  10.4  104  243-350     8-127 (188)
 24 1iry_A HMTH1; nudix motif(G37-  98.1 4.5E-06 1.9E-10   61.7   5.8  106  243-349     9-126 (156)
 25 2pbt_A AP4A hydrolase; nudix p  98.1 8.2E-05 3.4E-09   52.9  11.8  106  240-350     5-125 (134)
 26 3exq_A Nudix family hydrolase;  98.0 2.9E-05 1.2E-09   56.1   8.2  116  235-351     7-135 (161)
 27 3gg6_A Nudix motif 18, nucleos  97.9   5E-05 2.1E-09   54.4   8.7  111  237-350    19-143 (156)
 28 1vcd_A NDX1; nudix protein, di  97.9 9.7E-05 4.1E-09   52.4   9.8  112  239-355     3-125 (126)
 29 2kdv_A RNA pyrophosphohydrolas  97.9   3E-05 1.3E-09   55.9   7.0  113  240-356    10-164 (164)
 30 2b06_A MUTT/nudix family prote  97.9 9.5E-05   4E-09   52.4   9.2  114  238-351     9-133 (155)
 31 3id9_A MUTT/nudix family prote  97.9 3.7E-05 1.5E-09   55.3   6.8  108  238-349    23-147 (171)
 32 2pqv_A MUTT/nudix family prote  97.7  0.0003 1.3E-08   48.9   9.0  101  244-350    24-143 (154)
 33 1nqz_A COA pyrophosphatase (MU  97.7 0.00011 4.7E-09   51.9   6.8  101  239-339    35-152 (194)
 34 1f3y_A Diadenosine 5',5'''-P1,  97.6 5.4E-05 2.3E-09   54.1   5.0  110  238-350    14-161 (165)
 35 2fkb_A Putative nudix hydrolas  97.6 0.00046 1.9E-08   47.6   9.6  100  237-337    37-149 (180)
 36 3cng_A Nudix hydrolase; struct  97.6 0.00012 4.9E-09   51.8   6.6  101  240-341    41-152 (189)
 37 1vk6_A NADH pyrophosphatase; 1  97.6  0.0002 8.6E-09   50.1   7.6  104  241-348   142-258 (269)
 38 2o1c_A DATP pyrophosphohydrola  97.6 0.00033 1.4E-08   48.6   8.5  107  241-350    13-145 (150)
 39 2b0v_A Nudix hydrolase; struct  97.6 0.00031 1.3E-08   48.8   8.3  113  242-355    11-143 (153)
 40 3dku_A Putative phosphohydrola  97.6 0.00057 2.4E-08   46.9   9.6  106  241-348     7-128 (153)
 41 1k2e_A Nudix homolog; nudix/MU  97.5 0.00018 7.7E-09   50.4   6.6  100  242-348     5-130 (156)
 42 3f13_A Putative nudix hydrolas  97.5 0.00019   8E-09   50.3   6.4  102  243-350    20-127 (163)
 43 2azw_A MUTT/nudix family prote  97.5  0.0022 9.3E-08   42.8  11.3  110  236-349    16-142 (148)
 44 2qjo_A Bifunctional NMN adenyl  97.5 0.00094   4E-08   45.4   9.4  109  239-349   204-336 (341)
 45 3i9x_A MUTT/nudix family prote  97.4  0.0011 4.7E-08   44.9   9.4   98  251-348    47-166 (187)
 46 1hzt_A Isopentenyl diphosphate  97.4  0.0006 2.5E-08   46.8   7.7   95  243-337    37-150 (190)
 47 3h95_A Nucleoside diphosphate-  97.3  0.0016 6.5E-08   43.9   9.2  111  237-348    25-151 (199)
 48 1rya_A GDP-mannose mannosyl hy  97.3  0.0022 9.1E-08   42.9   9.8  103  242-345    22-147 (160)
 49 1sjy_A MUTT/nudix family prote  97.3  0.0013 5.5E-08   44.4   8.6   97  241-337    16-130 (159)
 50 3eds_A MUTT/nudix family prote  97.3  0.0004 1.7E-08   48.0   5.6  105  240-349    23-147 (153)
 51 3o8s_A Nudix hydrolase, ADP-ri  97.3 0.00067 2.8E-08   46.4   6.7   97  243-345    75-187 (206)
 52 1q27_A Putative nudix hydrolas  97.1  0.0024   1E-07   42.5   8.0  105  243-347    39-163 (171)
 53 3fcm_A Hydrolase, nudix family  97.1  0.0028 1.2E-07   42.1   8.2  108  238-349    46-183 (197)
 54 2jvb_A Protein PSU1, mRNA-deca  96.9  0.0043 1.8E-07   40.8   8.0   91  244-338    10-115 (146)
 55 1ktg_A Diadenosine tetraphosph  96.9   0.011 4.6E-07   37.9   9.8  100  248-350    16-131 (138)
 56 2qjt_B Nicotinamide-nucleotide  96.8  0.0058 2.4E-07   39.8   8.1  107  242-349   211-343 (352)
 57 3f6a_A Hydrolase, nudix family  96.6  0.0031 1.3E-07   41.8   5.6  109  238-351     5-152 (159)
 58 3gz5_A MUTT/nudix family prote  96.6   0.012 5.2E-07   37.5   8.5  106  243-349    30-151 (240)
 59 2a6t_A SPAC19A8.12; alpha/beta  96.6   0.004 1.7E-07   41.0   5.9   92  243-337   106-212 (271)
 60 2fvv_A Diphosphoinositol polyp  96.5  0.0056 2.4E-07   39.9   6.5  102  246-350    50-165 (194)
 61 1v8y_A ADP-ribose pyrophosphat  96.5   0.011 4.6E-07   37.9   7.8   96  241-337    36-144 (170)
 62 2yyh_A MUTT domain, 8-OXO-DGTP  96.5  0.0078 3.3E-07   38.9   7.1   95  251-348    26-132 (139)
 63 1xsa_A BIS(5'-nucleosyl)-tetra  96.2  0.0036 1.5E-07   41.3   3.9  103  244-349    23-142 (153)
 64 2dho_A Isopentenyl-diphosphate  96.1   0.053 2.2E-06   33.1   9.5   39  235-274    57-96  (235)
 65 2fb1_A Conserved hypothetical   96.0   0.024   1E-06   35.4   7.2   99  246-348    24-137 (226)
 66 3e57_A Uncharacterized protein  95.7   0.075 3.1E-06   32.0   8.7   98  240-338    69-189 (211)
 67 2w4e_A MUTT/nudix family prote  95.1   0.043 1.8E-06   33.7   6.0   90  244-337    11-117 (145)
 68 3fjy_A Probable MUTT1 protein;  95.1   0.059 2.5E-06   32.8   6.7  102  245-350    33-171 (364)
 69 2fml_A MUTT/nudix family prote  95.1     0.1 4.3E-06   31.1   7.8  117  213-336    22-156 (273)
 70 2pny_A Isopentenyl-diphosphate  95.0     0.2 8.3E-06   29.0   9.2   40  234-274    67-107 (246)
 71 2yvp_A NDX2, MUTT/nudix family  95.0   0.037 1.6E-06   34.2   5.3   90  244-337    47-154 (182)
 72 1mk1_A ADPR pyrophosphatase; n  94.8   0.049 2.1E-06   33.3   5.5   94  244-337    49-158 (207)
 73 2xsq_A U8 snoRNA-decapping enz  94.7   0.035 1.5E-06   34.3   4.5   88  249-341    64-179 (217)
 74 1vhz_A ADP compounds hydrolase  94.6     0.1 4.3E-06   31.0   6.8   94  242-337    52-160 (198)
 75 1u20_A U8 snoRNA-binding prote  94.4   0.032 1.4E-06   34.6   3.8   90  246-341    52-171 (212)
 76 2edu_A Kinesin-like protein KI  92.4    0.13 5.3E-06   30.4   4.1   56   71-134    31-86  (98)
 77 2ztd_A Holliday junction ATP-d  89.1     0.1 4.2E-06   31.1   1.1   42  118-160    88-131 (212)
 78 2dsc_A ADP-sugar pyrophosphata  88.9    0.72   3E-05   25.1   5.4   87  250-336    77-182 (212)
 79 1s5l_U Photosystem II 12 kDa e  87.8    0.26 1.1E-05   28.2   2.6   30  107-136    49-81  (134)
 80 3dup_A MUTT/nudix family prote  87.5    0.75 3.2E-05   25.0   4.7  110  239-348   122-259 (300)
 81 1cuk_A RUVA protein; DNA repai  87.4    0.15 6.3E-06   29.9   1.1   42  118-160    73-116 (203)
 82 1ixr_A Holliday junction DNA h  86.6   0.078 3.3E-06   31.9  -0.7   60  117-179    71-132 (191)
 83 3bz1_U Photosystem II 12 kDa e  86.3    0.16 6.7E-06   29.7   0.8   22  115-136    30-51  (104)
 84 2edu_A Kinesin-like protein KI  86.0    0.18 7.7E-06   29.3   1.0   23  115-137    37-59  (98)
 85 1jms_A Terminal deoxynucleotid  85.0    0.15 6.2E-06   29.9   0.1  107   39-160    16-129 (381)
 86 2bcq_A DNA polymerase lambda;   84.3     1.3 5.4E-05   23.3   4.6   45   94-140    35-79  (335)
 87 2kp7_A Crossover junction endo  83.3    0.64 2.7E-05   25.4   2.8   42   94-137    36-77  (87)
 88 1g0s_A Hypothetical 23.7 kDa p  83.2     2.4  0.0001   21.4   7.6   94  244-337    63-179 (209)
 89 2duy_A Competence protein come  81.5    0.27 1.1E-05   28.1   0.3   23  115-137    24-46  (75)
 90 1vdd_A Recombination protein R  80.6    0.43 1.8E-05   26.7   1.0   25  113-137     3-31  (228)
 91 3bz1_U Photosystem II 12 kDa e  80.5    0.39 1.6E-05   27.0   0.8   56   70-137    23-78  (104)
 92 2ihm_A POL MU, DNA polymerase   80.0     1.8 7.6E-05   22.3   4.1   45   94-140    39-83  (360)
 93 1z00_A DNA excision repair pro  79.6    0.29 1.2E-05   27.8  -0.1   36  114-150    47-82  (89)
 94 1cuk_A RUVA protein; DNA repai  78.4    0.43 1.8E-05   26.7   0.5   52   82-137    74-127 (203)
 95 2a1j_A DNA repair endonuclease  77.8     2.8 0.00012   20.9   4.5   38   60-100    16-53  (63)
 96 1q33_A Pyrophosphatase, ADP-ri  76.0       4 0.00017   19.8   7.6   30  251-284   140-169 (292)
 97 2a1j_B DNA excision repair pro  75.9    0.51 2.1E-05   26.2   0.3   24  114-137    60-83  (91)
 98 2fmp_A DNA polymerase beta; nu  75.8    0.35 1.5E-05   27.3  -0.6   43   94-138    35-77  (335)
 99 2ztd_A Holliday junction ATP-d  75.5    0.61 2.6E-05   25.6   0.6   55   83-141    90-146 (212)
100 1ixr_A Holliday junction DNA h  74.9    0.53 2.2E-05   26.0   0.2   55   83-141    74-130 (191)
101 1z00_B DNA repair endonuclease  74.5     4.3 0.00018   19.6   4.7   56   40-101    12-68  (84)
102 1x2i_A HEF helicase/nuclease;   73.8    0.42 1.8E-05   26.7  -0.6   24  115-138    43-66  (75)
103 2w9m_A Polymerase X; SAXS, DNA  71.3    0.91 3.8E-05   24.4   0.7   25  112-136    91-115 (578)
104 1kft_A UVRC, excinuclease ABC   60.6     1.6 6.8E-05   22.6   0.2   21  116-136    54-74  (78)
105 1b22_A DNA repair protein RAD5  60.5     3.5 0.00015   20.3   1.9   46  114-161    22-67  (114)
106 2q0z_X Protein Pro2281; SEC63,  60.2     8.3 0.00035   17.6   3.8   45   87-135   134-178 (339)
107 1vq8_Y 50S ribosomal protein L  57.8     1.7 7.3E-05   22.4   0.0   47   86-136    20-66  (241)
108 2i5h_A Hypothetical protein AF  57.5     1.9 7.9E-05   22.2   0.1   95   67-176    90-187 (205)
109 2va8_A SSO2462, SKI2-type heli  57.5     9.2 0.00039   17.3   4.2   19    9-27     16-36  (715)
110 2ph1_A Nucleotide-binding prot  53.9     5.8 0.00024   18.7   2.1   40  124-163    28-71  (262)
111 3cio_A ETK, tyrosine-protein k  53.1     6.2 0.00026   18.5   2.2   42  122-163   112-157 (299)
112 1viu_A ADP-ribose pyrophosphat  52.8      11 0.00046   16.8   6.7   89  248-337    58-168 (203)
113 2i1q_A DNA repair and recombin  48.3     2.6 0.00011   21.1  -0.3   43   62-106    17-60  (322)
114 3bzc_A TEX; helix-turn-helix,   47.1      12 0.00052   16.4   3.0   50   81-137   508-557 (785)
115 1d8b_A SGS1 RECQ helicase; fiv  47.0     3.7 0.00015   20.1   0.2   22  112-133    42-63  (81)
116 1exn_A 5'-exonuclease, 5'-nucl  46.7     6.5 0.00027   18.4   1.5   12  124-135   209-220 (290)
117 2rhf_A DNA helicase RECQ; HRDC  46.3     3.6 0.00015   20.2   0.1   21  112-132    41-61  (77)
118 3la6_A Tyrosine-protein kinase  45.9     9.3 0.00039   17.3   2.2   53  112-164    90-146 (286)
119 3bqs_A Uncharacterized protein  45.4       5 0.00021   19.2   0.7   57  117-175     3-59  (93)
120 2z43_A DNA repair and recombin  43.5       4 0.00017   19.8   0.0   82   66-149    31-150 (324)
121 2yxh_A MAZG-related protein; T  41.6     8.1 0.00034   17.7   1.3   28   60-87     83-110 (116)
122 2rrd_A BLM HRDC domain, HRDC d  41.1     5.1 0.00021   19.1   0.2   21  112-132    58-78  (101)
123 2zkq_m 40S ribosomal protein S  40.9     7.4 0.00031   18.0   1.0   33  106-138    13-48  (152)
124 2oze_A ORF delta'; para, walke  39.1     7.9 0.00033   17.7   1.0   39  125-163    47-88  (298)
125 1wud_A ATP-dependent DNA helic  38.1     6.1 0.00025   18.6   0.2   21  112-132    49-69  (89)
126 2p6r_A Afuhel308 helicase; pro  37.5     9.8 0.00041   17.1   1.2   12    8-19     10-21  (702)
127 2ziu_A MUS81 protein; helix-ha  36.4     5.8 0.00024   18.7  -0.1   11   19-29      4-15  (311)
128 3kjh_A CO dehydrogenase/acetyl  36.4      17 0.00073   15.4   2.3   39  124-162     9-50  (254)
129 2woj_A ATPase GET3; tail-ancho  36.0      12 0.00052   16.4   1.5   31  118-148   137-167 (354)
130 1rq6_A 30S ribosomal protein S  35.1      15 0.00063   15.8   1.8   29   94-122     5-33  (62)
131 1wcv_1 SOJ, segregation protei  33.8      21 0.00088   14.8   3.4   40  125-164    17-59  (257)
132 3gfk_B DNA-directed RNA polyme  32.8      11 0.00046   16.8   0.8   49   87-137    19-67  (79)
133 2vqe_M 30S ribosomal protein S  30.4     6.4 0.00027   18.4  -0.7   27  112-138     8-37  (126)
134 3im1_A Protein SNU246, PRE-mRN  29.7      24   0.001   14.3   3.3   43   88-135   132-174 (328)
135 2csb_A Topoisomerase V, TOP61;  28.1      15 0.00061   15.9   0.8  100   39-152   142-249 (519)
136 2kob_A Uncharacterized protein  27.9      17 0.00071   15.5   1.1   88   39-127     7-100 (108)
137 1hyq_A MIND, cell division inh  27.5      26  0.0011   14.1   2.6   37  125-161    13-53  (263)
138 3iqw_A Tail-anchored protein t  26.8      27  0.0011   14.0   2.2   38  124-161    25-65  (334)
139 1bgx_T TAQ DNA polymerase; DNA  25.6     5.1 0.00022   19.1  -1.9   30  107-137   170-210 (832)
140 1gm5_A RECG; helicase, replica  24.9     6.8 0.00029   18.2  -1.3   16  120-135   117-132 (780)
141 3mtu_E Head morphogenesis prot  24.4      10 0.00043   17.0  -0.5   29   47-80     30-59  (77)
142 2e1f_A Werner syndrome ATP-dep  24.0      13 0.00053   16.3  -0.1   22  111-132    50-71  (103)
143 2aq4_A DNA repair protein REV1  23.4      31  0.0013   13.6   4.4   41  120-160   243-285 (434)
144 3c65_A Uvrabc system protein C  22.8      15 0.00061   15.9   0.0   17  146-162    38-54  (226)
145 3fkq_A NTRC-like two-domain pr  22.5      32  0.0014   13.5   2.4   43  123-165   152-197 (373)
146 1z3e_B DNA-directed RNA polyme  22.0      14  0.0006   15.9  -0.2   48   87-136    12-59  (73)
147 2iyv_A Shikimate kinase, SK; t  21.9      22 0.00091   14.7   0.8   37  120-160     7-43  (184)
148 2nrt_A Uvrabc system protein C  21.6      34  0.0014   13.3   3.0   23  329-351   197-220 (220)
149 2w96_A G1/S-specific cyclin-D1  21.1      34  0.0014   13.3   5.6   82   50-152    74-163 (271)

No 1  
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00  E-value=0  Score=757.78  Aligned_cols=339  Identities=32%  Similarity=0.597  Sum_probs=309.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHH
Q ss_conf             16899999999999628998875485544456787046766446731161203326589987748997898729989999
Q gi|254780479|r    4 PEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEIL   83 (356)
Q Consensus         4 ~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl   83 (356)
                      +++.|++.||+||+.|+|+||||++        +|||+|||||||||||||++|++||++|+++|||+++||+|+++||+
T Consensus        12 ~~~~~~~~ll~wy~~~~r~lpWr~~--------~~py~vlvseil~qqT~~~~v~~~~~~~~~~~pt~~~la~a~~~ev~   83 (369)
T 3fsp_A           12 PAREFQRDLLDWFARERRDLPWRKD--------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVL   83 (369)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCGGGSC--------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
T ss_conf             5999999999999846988998989--------98799999999861087889999999999977899999778999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC
Q ss_conf             99740463458899987767543005786873145688888777877667766434963131243146665765197545
Q gi|254780479|r   84 SAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP  163 (356)
Q Consensus        84 ~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~  163 (356)
                      ++|+|||||+||+|||++|++|+++|+|.+|.+.++|++|||||+|||+||+|||||+++++|||||.||++|++++..+
T Consensus        84 ~~~~~lGyy~ra~~l~~~a~~i~~~~~g~~P~~~~~L~~LpGVG~~TA~ail~~a~~~~~~~vD~nv~Rv~~R~~~~~~~  163 (369)
T 3fsp_A           84 KAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDD  163 (369)
T ss_dssp             HTTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSC
T ss_pred             HHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCCCC
T ss_conf             99874688999999985212276004899998799985242258899999999861488612248513567543044688


Q ss_pred             C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             7--35689998741025785226789999999986320412356431100000134310110012344322222211232
Q gi|254780479|r  164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA  241 (356)
Q Consensus       164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~  241 (356)
                      .  +...+.++.+++.++|..++++||||||||||+||+|++|+|..|||++.|.||+.|.++.||+|++|++++.+...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~nqalmdlG~~iC~~~~P~C~~CPl~~~C~~~~~~~~~~~P~k~kK~~~~~~~~~  243 (369)
T 3fsp_A          164 IAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLA  243 (369)
T ss_dssp             TTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEE
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCCCCHHHCCCCCCCCCCCCCCHH
T ss_conf             87511467788753035876775688999999756415689998988985332776527997656788778876532046


Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHH-----HCCCCCCCCEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf             0003413760577645720132047442111134672158886-----30101000021373589983159999999998
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDT-----HSAPFTANWILCNTITHTFTHFTLTLFVWKTI  316 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~-----~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~~  316 (356)
                      ++++++.+|++||+||+++|+|+||||||+++++..+......     ...........+++|+|+||||++++++|.+.
T Consensus       244 ~~i~~~~~~~iLl~kR~~~gll~GLweFP~~~~e~~~~~~~l~r~l~ee~~i~~~~~~~l~~v~H~fSH~~l~l~vy~~~  323 (369)
T 3fsp_A          244 VAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGR  323 (369)
T ss_dssp             EEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSSCTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEE
T ss_pred             HHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCEEEEECCCEEEEEEEEEEE
T ss_conf             76641217888998625544457876288566576430778998889870886011140451589658968999999999


Q ss_pred             CCCCC-CCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             07767-66781332278887479987899999844
Q gi|254780479|r  317 VPQIV-IIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       317 ~~~~~-~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      +.+.. ..++++|++.+++++++||++++|||+.+
T Consensus       324 ~~~~~~~~~~~~Wv~~~el~~~~lp~~~kKIl~~~  358 (369)
T 3fsp_A          324 LVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREY  358 (369)
T ss_dssp             ECCSSCCCTTEEEEEGGGGGGSCCCHHHHHHHHHH
T ss_pred             ECCCCCCCCCCEEEEHHHHHHCCCCHHHHHHHHHH
T ss_conf             67898788787884389876689998999999999


No 2  
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00  E-value=0  Score=639.78  Aligned_cols=268  Identities=37%  Similarity=0.625  Sum_probs=247.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHH
Q ss_conf             68999999999996289988754855444567870467664467311612033265899877489978987299899999
Q gi|254780479|r    5 EHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILS   84 (356)
Q Consensus         5 ~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~   84 (356)
                      ...|+++||+||+.|+|+||||++.+..+...+|||+|||||||||||||+||++||++||++|||+++||+|++|||++
T Consensus        15 ~~~~~~~Ll~Wy~~~~R~lPWR~~~~~~~~~~~~py~vlvseimlqQT~~~~V~~~~~~~~~r~Pt~~~LA~A~~~ev~~   94 (287)
T 3n5n_X           15 VTAFRGSLLSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWPTLQDLASASLEEVNQ   94 (287)
T ss_dssp             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHH
T ss_conf             99999999999996699899885887656667887899999999811869999999999999877999997679999999


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC
Q ss_conf             97404634588999877675430057868731456888-88777877667766434963131243146665765197545
Q gi|254780479|r   85 AWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKK-LPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP  163 (356)
Q Consensus        85 ~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~-LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~  163 (356)
                      +|+|||||+||+||+++|++|+++|+|.+|.+..+++. |||||+|||+||+|||||++.++|||||.||++|++++..+
T Consensus        95 ~~~glGyy~ra~~l~~~a~~i~~~~~g~~p~~~~e~l~~LPGVG~kTA~aIl~~af~~~~~~VDtnV~RV~~Rl~~~~~~  174 (287)
T 3n5n_X           95 LWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGAD  174 (287)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHTTCCSC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEECCCCCC
T ss_conf             99856389999999999988889847988762154404688756899999999883040001148700135565222676


Q ss_pred             C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             7--35689998741025785226789999999986320412356431100000134310110012344322222211232
Q gi|254780479|r  164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA  241 (356)
Q Consensus       164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~  241 (356)
                      .  ...++.+|.+++.++|..++++|||||||||++||+|++|+|+.|||++.|.||+++.++.+|+++++++++...  
T Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~~~~~n~alm~lG~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~~k~~~~~~--  252 (287)
T 3n5n_X          175 PSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGSPDVE--  252 (287)
T ss_dssp             TTSHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHHHHHHHHHHTTCC-----CC--
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCCCCCCCCCEEE--
T ss_conf             554402566776654048744431999999998788607799988889761148556529875445776577887689--


Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCC
Q ss_conf             000341376057764572013204744211113
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAW  274 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~  274 (356)
                      ..++++.++++++.+|+++|+|+|||+||+.+.
T Consensus       253 ~~~~~~~~~~~~l~k~~~~~~~~gL~~fP~~~~  285 (287)
T 3n5n_X          253 ECAPNTGQCHLCLPPSEPWDQTLGVVNFPRKAS  285 (287)
T ss_dssp             SSGGGCSSCCCSSCCSSCCCSSCCCCC------
T ss_pred             EEEEECCCCEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             999982798799987898786454110777600


No 3  
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00  E-value=0  Score=481.59  Aligned_cols=221  Identities=39%  Similarity=0.753  Sum_probs=209.6

Q ss_pred             CHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHH
Q ss_conf             168999999999996289-9887548554445678704676644673116120332658998774899789872998999
Q gi|254780479|r    4 PEHIIQSKILDWYDTNHR-VLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEI   82 (356)
Q Consensus         4 ~~~~~~~~ll~w~~~~~R-~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~v   82 (356)
                      +++.|+++||+||+.++| +||||.+        +|||.|||||||+|||++++|.++|.+|+++|||+++||+|+++||
T Consensus         2 ~~~~~~~~ll~wy~~~~~~~lPWr~~--------~~p~~vlV~~iLsqqT~~~~v~~~~~~l~~~~~t~~~la~a~~~el   73 (225)
T 1kg2_A            2 QASQFSAQVLDWYDKYGRKTLPWQID--------KTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEV   73 (225)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCSGGGSS--------CCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCSSHHHHHHSCHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCHHHH
T ss_conf             86899999999999829987999999--------9869999999997328599999999999998789999972289999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCC
Q ss_conf             99974046345889998776754300578687314568888877787766776643496313124314666576519754
Q gi|254780479|r   83 LSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK  162 (356)
Q Consensus        83 l~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~  162 (356)
                      ..+|.|+|||+||+||+++|++|+++|+|.+|.+.++|++|||||+|||++|+++|||+|.++||+||.||++|++++..
T Consensus        74 ~~~i~~~gy~~ka~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~a~~~p~~~VDt~v~Rv~~Rl~~~~~  153 (225)
T 1kg2_A           74 LHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSG  153 (225)
T ss_dssp             HHHHTTSCCTHHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHTCCS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHEEHHCCCCCC
T ss_conf             99986167327799999999999987079997429999758987478999999985298616328875540000215668


Q ss_pred             C--CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf             5--735689998741025785226789999999986320412356431100000134310110012344322
Q gi|254780479|r  163 P--APLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIK  232 (356)
Q Consensus       163 ~--~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~K  232 (356)
                      .  ....++.++.+++.++|...+++||++|||||+.||+|++|+|+.|||++.|.+|++|.++.+|+|++|
T Consensus       154 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~G~~iC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~k~~k  225 (225)
T 1kg2_A          154 WPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK  225 (225)
T ss_dssp             CTTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGGGSSCCCC-
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCC
T ss_conf             997268999999987513860000177799999978881599999998978222978765992017889999


No 4  
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.96.1.2
Probab=100.00  E-value=0  Score=472.60  Aligned_cols=213  Identities=31%  Similarity=0.594  Sum_probs=203.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHH
Q ss_conf             67168999999999996289988754855444567870467664467311612033265899877489978987299899
Q gi|254780479|r    2 PQPEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEE   81 (356)
Q Consensus         2 ~~~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~   81 (356)
                      .++.+.|++.||+||+.|+|+||||++        +|||.|||||||+|||++++|.++|.+|+++|||+++||+|+++|
T Consensus         6 ~~~~~~~~~~ll~wy~~~~r~lpWr~~--------~dp~~vlv~~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~a~~~e   77 (221)
T 1kea_A            6 NKKRKVFVSTILTFWNTDRRDFPWRHT--------RDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSE   77 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCGGGGC--------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCHHH
T ss_conf             778999999999999966999999989--------987999999999821959999999999999788999998299999


Q ss_pred             HHHHHHCCCHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCC
Q ss_conf             99997404634-58899987767543005786873145688888777877667766434963131243146665765197
Q gi|254780479|r   82 ILSAWAGLGYY-TRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDI  160 (356)
Q Consensus        82 vl~~w~gLGyy-~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~  160 (356)
                      |..+|.|+||| +||++|+++|++|+++|+|.+|.+.++|++|||||+|||++|++++||++.++||+||.||++|++++
T Consensus        78 l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~vp~~~~eL~~LPGVG~ktA~~vl~~a~~~~~~~VD~~v~Rv~~R~~~~  157 (221)
T 1kea_A           78 IAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGG  157 (221)
T ss_dssp             HHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCCCCCCCHHHHHHHHHHHCG
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHCC
T ss_conf             99999987899999999999999998860587301288874489876567999999853887401044999999998067


Q ss_pred             CCC-CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf             545-73568999874102578522678999999998632041235643110000013431011
Q gi|254780479|r  161 IKP-APLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGK  222 (356)
Q Consensus       161 ~~~-~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~  222 (356)
                      ... .....+.++.+++.++|.+++++|||+|||||+.||+|++|+|+.|||++.|.+|+++.
T Consensus       158 ~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~l~~~G~~vC~~~~P~C~~Cpl~~~C~~y~k~~  220 (221)
T 1kea_A          158 SYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKCS  220 (221)
T ss_dssp             GGTTCCTTSHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             889942679999999986288032999999999996887038899998898801084727779


No 5  
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00  E-value=0  Score=445.94  Aligned_cols=207  Identities=25%  Similarity=0.395  Sum_probs=192.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHH
Q ss_conf             16899999999999628998875485544456787046766446731161203326589987748997898729989999
Q gi|254780479|r    4 PEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEIL   83 (356)
Q Consensus         4 ~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl   83 (356)
                      +...+.+.|.+||..++++||||           |||.|||||||+|||++++|.++|++|+++|||+++||+|+++|+.
T Consensus         9 ~~~~i~~~L~~~y~~~~~~l~~r-----------dP~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p~~~~la~a~~~el~   77 (226)
T 1orn_A            9 QIRYCLDEMAKMFPDAHCELVHR-----------NPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELE   77 (226)
T ss_dssp             HHHHHHHHHHHHCTTCCCCSCCS-----------SHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCC-----------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
T ss_conf             99999999998779999999989-----------9799999999984085999999999998713999998638998998


Q ss_pred             HHHHCCCHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCC
Q ss_conf             9974046345-889998776754300578687314568888877787766776643496313124314666576519754
Q gi|254780479|r   84 SAWAGLGYYT-RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK  162 (356)
Q Consensus        84 ~~w~gLGyy~-Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~  162 (356)
                      ..|.|+|||+ ||+||+++|++|+++|+|.+|.+.++|++|||||+|||+||++|+||+|+++|||||.||++|++.++.
T Consensus        78 ~~i~~~g~y~~ka~~i~~~a~~i~~~~~g~vP~~~~~L~~LpGVG~kTA~~il~~a~~~p~~~VDtnv~RV~~Rlg~~~~  157 (226)
T 1orn_A           78 QDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVPAIAVDTHVERVSKRLGFCRW  157 (226)
T ss_dssp             HHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTSSCT
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             98874221999999999999999999299798789999748775367999999998168867788555689988286665


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf             5735689998741025785226789999999986320412356431100000134310110
Q gi|254780479|r  163 PAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKS  223 (356)
Q Consensus       163 ~~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~  223 (356)
                      +..  .+.++..++.++|.+++++|||+|||||+.||+|++|+|+.|||++.|.+++++..
T Consensus       158 ~~~--~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~P~C~~CPl~~~C~~~~~~~~  216 (226)
T 1orn_A          158 DDS--VLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMR  216 (226)
T ss_dssp             TCC--HHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHHHT
T ss_pred             CCC--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHHHCCCC
T ss_conf             540--36789999983865330599999999999884589999998988221678771564


No 6  
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00  E-value=0  Score=409.48  Aligned_cols=202  Identities=21%  Similarity=0.284  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHH
Q ss_conf             99999999996289988754855444567870467664467311612033265899877489978987299899999974
Q gi|254780479|r    8 IQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWA   87 (356)
Q Consensus         8 ~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~   87 (356)
                      ..+-+..|++.+.+.-+|..        .+|||.|||||||+|||++++|.++|.+|+++|||+++||+|++++|..+|+
T Consensus         6 ~~ei~~~L~~~~~~~~~~l~--------~~~p~~ili~~iLsqqT~~~~v~~~~~~L~~~~~t~~~la~a~~~~l~~~i~   77 (211)
T 2abk_A            6 RLEILTRLRENNPHPTTELN--------FSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIK   77 (211)
T ss_dssp             HHHHHHHHHHHCSSCCCSSC--------CSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCCCC--------CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHH
T ss_conf             99999999997899999888--------9986999999999740868999999999998758999986279999999998


Q ss_pred             CCCHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCH
Q ss_conf             046345-8899987767543005786873145688888777877667766434963131243146665765197545735
Q gi|254780479|r   88 GLGYYT-RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPL  166 (356)
Q Consensus        88 gLGyy~-Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~  166 (356)
                      |+|||+ ||++|+++|++|+++|+|.+|.+.++|++|||||+|||+||+++|||+|+++|||||.||++|++.....   
T Consensus        78 ~~G~y~~Ka~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~a~~~~~~~VDtnv~Rv~~R~g~~~~~---  154 (211)
T 2abk_A           78 TIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGK---  154 (211)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCSSCCS---
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCC---
T ss_conf             62179999999999999999984899983299987178873699999999873588621462277899985767899---


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf             689998741025785226789999999986320412356431100000134310
Q gi|254780479|r  167 YHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSE  220 (356)
Q Consensus       167 ~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~  220 (356)
                      ..+.++..+..++|.+.+++|||+|||||++||++++|+|+.|||+..|.+|++
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~G~~vC~~r~P~C~~Cpl~~~C~y~~k  208 (211)
T 2abk_A          155 NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEK  208 (211)
T ss_dssp             SHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCTTC
T ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             889999998721760127999999999700132599999999989054988677


No 7  
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=100.00  E-value=8.4e-36  Score=271.16  Aligned_cols=171  Identities=15%  Similarity=0.199  Sum_probs=144.2

Q ss_pred             CCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH-------CCCHHHHHCCCHHHHHHHHHCCC
Q ss_conf             89988--7548554445678704676644673116120332658998774-------89978987299899999974046
Q gi|254780479|r   20 HRVLP--WRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQK-------WPTIFCLSSAKDEEILSAWAGLG   90 (356)
Q Consensus        20 ~R~lp--wr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~-------~P~~~~la~a~~~~vl~~w~gLG   90 (356)
                      .|..|  |+.+        ++||.+|||+||+|||++.+|...+.+..++       |||+++||+|+++++.++|.++|
T Consensus        17 ~~~~p~~W~p~--------~~pfe~lv~~IL~Qqt~~~~v~~a~~~L~~~~~~~~~~~~t~~~la~a~~~eL~~~ir~~G   88 (218)
T 1pu6_A           17 LKNAPAWWWPN--------ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG   88 (218)
T ss_dssp             TTTSCTTSSTT--------TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGS
T ss_pred             HHCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHCC
T ss_conf             82899999999--------9879999999994669899999999999998752012489999997799999999999879


Q ss_pred             HHH-HHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCC
Q ss_conf             345-889998776754300578----687314568888877787766776643496313124314666576519754573
Q gi|254780479|r   91 YYT-RARNLKKCADIIVKKYEG----NFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAP  165 (356)
Q Consensus        91 yy~-Rar~l~~~a~~i~~~~~g----~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~  165 (356)
                      ||+ ||++|+++|+.|+++|++    ..|.+.++|++|||||+|||++|+++||++++++||+||.||++|++....+..
T Consensus        89 ~~~~Ka~~l~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~~~vD~~v~Rv~~Rlg~~~~~~~  168 (218)
T 1pu6_A           89 FYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYD  168 (218)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCCCSHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHH
T ss_conf             95899999999999999866310379946799999848996699999999998799806204259999999089889999


Q ss_pred             HHHHHHHHHHHCCCCC----------------CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             5689998741025785----------------226789999999986320412
Q gi|254780479|r  166 LYHKTIKNYARKITST----------------SRPGDFVQAMMDLGALICTSN  202 (356)
Q Consensus       166 ~~~k~l~~~~~~~~~~----------------~~~~~~nQAlMdlGa~iC~p~  202 (356)
                          .++.+.+..+|.                ....+|+..||+||..+|++|
T Consensus       169 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~efH~~iv~~Gk~~C~ak  217 (218)
T 1pu6_A          169 ----ELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELK  217 (218)
T ss_dssp             ----HHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             ----9999999886898999887750002089999999999999869877898


No 8  
>1ngn_A Methyl-CPG binding protein MBD4; mismacth repair in methylated DNA, DNA binding protein; 2.10A {Mus musculus} SCOP: a.96.1.2 PDB: 3iho_A
Probab=99.95  E-value=3.3e-28  Score=217.70  Aligned_cols=131  Identities=21%  Similarity=0.334  Sum_probs=115.4

Q ss_pred             CCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHH-HHHHHHH
Q ss_conf             887548554-44567870467664467311612033265899877489978987299899999974046345-8899987
Q gi|254780479|r   23 LPWRTSPKT-EKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYT-RARNLKK  100 (356)
Q Consensus        23 lpwr~~~~~-~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~-Rar~l~~  100 (356)
                      .|++..-.. .+...+|||+++||+||+|||+.++|.++|.+|+++|||+++||+|+++|+..+|.++|||+ ||++|++
T Consensus        14 ~pp~~~~~l~~E~~~~dpf~~LVa~ILsqqT~~~~v~~v~~~l~~~~pt~~~la~a~~~el~~~i~~lG~~~~KAk~I~~   93 (155)
T 1ngn_A           14 TPPRSPFNLVQEILFHDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVSELLKPLGLYDLRAKTIIK   93 (155)
T ss_dssp             CCCCCTTCCTHHHHTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99998631157760498389999999987096999999999999988899999873499999997200268799999999


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHCC
Q ss_conf             76754300578687314568888877787766776643496--3131243146665765197
Q gi|254780479|r  101 CADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH--FAVVVDTNIERIISRYFDI  160 (356)
Q Consensus       101 ~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~--~~~~vD~Nv~RVl~R~~~~  160 (356)
                      +|+.+       +|++.++|++|||||+|||+|+++||||+  ++.++|.|++|.+.+++..
T Consensus        94 ~a~~~-------vp~~~~~l~~LpGVG~ytad~~~if~~~~~~~v~~~D~~lr~~~~w~~~~  148 (155)
T 1ngn_A           94 FSDEY-------LTKQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWEN  148 (155)
T ss_dssp             HHHHH-------HHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             97166-------54423316758982199999999998799888888758999999999806


No 9  
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.94  E-value=2.6e-28  Score=218.42  Aligned_cols=169  Identities=17%  Similarity=0.159  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHH
Q ss_conf             99999999996289988754855444567870467664467311612033265899877489978987299899999974
Q gi|254780479|r    8 IQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWA   87 (356)
Q Consensus         8 ~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~   87 (356)
                      +-++++.+|..    ++|+..        .|||.++|++||.|||++..|...++++    |  +.++.++++|+...+.
T Consensus        25 ~i~~~~~~f~~----~~~~~~--------~~~F~~Lv~~ILsqqt~~~~~~~~~~~l----~--e~~~~~~~eel~~~ik   86 (214)
T 3fhf_A           25 IIDKRIQEFKS----FKNKSN--------EEWFKELCFCILTANFTAEGGIRIQKEI----G--DGFLTLPREELEEKLK   86 (214)
T ss_dssp             HHHHHHHHHHG----GGGSCH--------HHHHHHHHHHHHHTTSCHHHHHHHHHHH----T--THHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHCC----CCCCCC--------CCHHHHHHHHHHCCCCCHHHHHHHHHHH----H--HHHHCCCHHHHHHHHH
T ss_conf             99999998515----677654--------8889999999973657399999999999----9--9998699999999999


Q ss_pred             CCC--HH-HHHHHHHHHHHH-----HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHC
Q ss_conf             046--34-588999877675-----4300578687314568888877787766776643496313124314666576519
Q gi|254780479|r   88 GLG--YY-TRARNLKKCADI-----IVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFD  159 (356)
Q Consensus        88 gLG--yy-~Rar~l~~~a~~-----i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~  159 (356)
                      ..|  || +||++|+++|++     +.+.++|.+|.+.++|.+|||||+|||++|++++|+.+.++||+||.||+.|++.
T Consensus        87 ~~G~~f~~~KAk~I~~~a~~~~~~~l~~~~~~~~~~~~~~L~~l~GIG~ktA~~~L~~~~~~~~~ivD~hv~Ri~~rlg~  166 (214)
T 3fhf_A           87 NLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRELYENNY  166 (214)
T ss_dssp             HTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTS
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
T ss_conf             94645679999999999999999888897399898739999748887699999999997699863132799999999388


Q ss_pred             CCCC-CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             7545-7356899987410257852267899999999
Q gi|254780479|r  160 IIKP-APLYHKTIKNYARKITSTSRPGDFVQAMMDL  194 (356)
Q Consensus       160 ~~~~-~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdl  194 (356)
                      +... ...+++....+.+.+.+..+..++++++||+
T Consensus       167 ~~~~~k~~t~k~y~~~e~~l~~~~~~~~~~~~~lDl  202 (214)
T 3fhf_A          167 IDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDL  202 (214)
T ss_dssp             SSSCCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             777776421647999999999777637999899899


No 10 
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.87  E-value=4.2e-22  Score=174.68  Aligned_cols=131  Identities=21%  Similarity=0.297  Sum_probs=104.0

Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEEC---CCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHH--------CCCCC
Q ss_conf             100123443222222112320003413---7605776457201320474421111346721588863--------01010
Q gi|254780479|r  222 KSHLLGINTIKKKRPMRTGAVFIAITN---DNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTH--------SAPFT  290 (356)
Q Consensus       222 ~~~~~P~kk~KKkk~~r~~~~~vii~~---~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~--------~~~~~  290 (356)
                      ...+||+|++||+++.+...++|+.+.   +|+|||+||+++|+|+||||||+++++..+.......        .....
T Consensus         3 ~~~s~PvK~~kk~~~~~~~~~~iv~~~~~~~~~iLl~kRp~~gl~~GLWefP~~~~e~~e~~~~~~~~~~~~e~~~~~~~   82 (155)
T 1x51_A            3 SGSSGPRKASRKPPREESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPA   82 (155)
T ss_dssp             CSCSCTTSSSCSCTTEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCS
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             86668988788999789899999995578899899997799996774411636112158666677999999986355621


Q ss_pred             CCCEECCCEEEEEEEEEEEEEEEEEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             00021373589983159999999998077----676678133227888747998789999984482
Q gi|254780479|r  291 ANWILCNTITHTFTHFTLTLFVWKTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAGGI  352 (356)
Q Consensus       291 ~~~~~l~~ikH~fTH~~L~i~v~~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~  352 (356)
                      .....++.++|+|||+++++++|.+.+..    ....++++|++.+++++++||++++|||+.+..
T Consensus        83 ~~~~~~~~~~H~ftH~~l~~~~~~~~~~~~~~~~~~~~~~~Wv~~~el~~~~lp~~~~Kil~~~~~  148 (155)
T 1x51_A           83 THLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQG  148 (155)
T ss_dssp             TTCEECCCBCCBCSSCEEEEEEEEEECSSCCCCCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             232102432101577438999999984068845566768799777882226999999999999985


No 11 
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.83  E-value=1.6e-21  Score=170.50  Aligned_cols=173  Identities=14%  Similarity=0.138  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHH
Q ss_conf             99999999999628998875485544456787046766446731161203326589987748997898729989999997
Q gi|254780479|r    7 IIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAW   86 (356)
Q Consensus         7 ~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w   86 (356)
                      .++..++...+..+  ++.+.       ...+++..+|+-|+.|||.+..+...++++.+      .++.++++++...+
T Consensus        10 k~~~~v~~ri~~~~--~~~~~-------~~~~~F~~L~~~Ilsqq~s~~~a~~~~~~l~e------~~~~~~~~~l~~~l   74 (207)
T 3fhg_A           10 KVRARVLERVDEFR--LNNLS-------NEEVWFRELTLCLLTANSSFISAYQALNCLGQ------KIYYANEEEIRNIL   74 (207)
T ss_dssp             HHHHHHHHHHHHHH--HHHTS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHGG------GGGTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC--CCCCC-------CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH------HHHCCCHHHHHHHH
T ss_conf             88999999998737--78886-------30219999999997586729999999999999------88549999999999


Q ss_pred             HCCC--H-HHHHHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHH
Q ss_conf             4046--3-458899987767543005786873--------1456888887778776677664349631312431466657
Q gi|254780479|r   87 AGLG--Y-YTRARNLKKCADIIVKKYEGNFPH--------KVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIIS  155 (356)
Q Consensus        87 ~gLG--y-y~Rar~l~~~a~~i~~~~~g~~P~--------~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~  155 (356)
                      .++|  | ++||++++.+|+.+.+++++.+|.        ..++|++|||||++||++++.++++.+.+++|+||.|++.
T Consensus        75 k~~g~~f~~~ka~~i~~~a~~i~~~~~~~~~~l~~~~~~e~~~~L~~l~GIG~ktA~~~L~~~~~~~~~~vD~hv~Ri~~  154 (207)
T 3fhg_A           75 KSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGYFDLAIIDRHIIDFMR  154 (207)
T ss_dssp             HHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTCCSSCCCCHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             98376068889999999999999873784066661787999999998788729999999999768876678479999999


Q ss_pred             HHHCCCCC--CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             65197545--7356899987410257852267899999999
Q gi|254780479|r  156 RYFDIIKP--APLYHKTIKNYARKITSTSRPGDFVQAMMDL  194 (356)
Q Consensus       156 R~~~~~~~--~~~~~k~l~~~~~~~~~~~~~~~~nQAlMdl  194 (356)
                      |++.+...  .+.+++..+.+.+.+.+..+..+.+|++||+
T Consensus       155 r~g~~~~~~~k~~~~k~y~~ie~~l~~~~~~~~~~~~~~dl  195 (207)
T 3fhg_A          155 RIGAIGETNVKQLSKSLYISFENILKSIASNLNMSVGILDL  195 (207)
T ss_dssp             HTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             92885678877443889999999999876607987899999


No 12 
>1m3q_A 8-oxoguanine DNA glycosylase; DNA repair, END product, HOGG, 8-aminoguanine, RE-ligation, hydrolase/DNA complex; HET: DRZ ANG; 1.90A {Homo sapiens} SCOP: a.96.1.3 d.129.1.2 PDB: 1m3h_A* 1n39_A* 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 1fn7_A* 1n3a_A* 1n3c_A* 1ebm_A* 1ko9_A 2noe_A* 2noh_A* 2nol_A* 3ktu_A* 1yqk_A 2noz_A* 2nof_A* 1yqr_A* 1yql_A* ...
Probab=99.70  E-value=1.8e-17  Score=142.02  Aligned_cols=124  Identities=25%  Similarity=0.372  Sum_probs=106.1

Q ss_pred             CCHHHHHHHHHHHHHCCHHHCCHHHHHHHH---------------HCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             870467664467311612033265899877---------------48997898729989999997404634588999877
Q gi|254780479|r   37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQ---------------KWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKC  101 (356)
Q Consensus        37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~---------------~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~  101 (356)
                      +|||..+|+-|+-||+.+........++.+               .||+++.||+++.|+.++. -|+||  ||++++++
T Consensus       127 qdpfE~Lv~~I~sQq~si~~a~~~~~~L~~~~G~~~~~~~~~~~~~FPtp~~L~~~~~e~~lr~-~g~g~--Ra~~i~~~  203 (317)
T 1m3q_A          127 QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRK-LGLGY--RARYVSAS  203 (317)
T ss_dssp             CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHHHHH-TTCTT--HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHH-CCCHH--HHHHHHHH
T ss_conf             9879999999999883399999999999998299877878642147899999973688999986-26368--99999999


Q ss_pred             HHHHHHCCCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEECCCCHHHHHHHHHCCCCC
Q ss_conf             675430057868----------73145688888777877667766434963-131243146665765197545
Q gi|254780479|r  102 ADIIVKKYEGNF----------PHKVEILKKLPGIGDYTASAIVAIAFNHF-AVVVDTNIERIISRYFDIIKP  163 (356)
Q Consensus       102 a~~i~~~~~g~~----------P~~~~~l~~LpGiG~yta~ai~s~a~~~~-~~~vD~Nv~RVl~R~~~~~~~  163 (356)
                      |+.+.+..+|..          ++-.++|++|||||++||..|+.++++.+ +.+||++|+|+++|+|+....
T Consensus       204 a~~~~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~wtAd~ilLf~lg~~dafPvD~~v~r~~~~~y~~~~~  276 (317)
T 1m3q_A          204 ARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDKPQAVPVEVHMWHIAQRDYSWHPT  276 (317)
T ss_dssp             HHHHHHTSCSHHHHHHTTTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCS
T ss_pred             HHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCC
T ss_conf             9999853444046998853557999999985489488999999998579998677529999999997133555


No 13 
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.61  E-value=8.4e-16  Score=130.28  Aligned_cols=123  Identities=22%  Similarity=0.310  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHC--------------CCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             87046766446731161203326589987748--------------9978987299899999974046345889998776
Q gi|254780479|r   37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQKW--------------PTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCA  102 (356)
Q Consensus        37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~~~--------------P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a  102 (356)
                      +|||..+||-|+-||+.+......+.++.++|              |+++.|+.++++++..  -|+||  ||++|+++|
T Consensus       113 qdpfE~Lv~~I~sQq~si~~a~~~~~~L~~~~G~~~~~~~~~~~~fPtp~~l~~~~~e~lr~--~g~g~--Ra~yI~~~A  188 (290)
T 3i0w_A          113 QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEE--CTAGF--RAKYLKDTV  188 (290)
T ss_dssp             CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHH--TTCGG--GHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHH--CCHHH--HHHHHHHHH
T ss_conf             98699999999984620999999999999981987787764235789999997599999986--27598--999999999


Q ss_pred             HHHHHCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEECCCCHHHHHHHHHCCCCC
Q ss_conf             75430057-------86873145688888777877667766434963-131243146665765197545
Q gi|254780479|r  103 DIIVKKYE-------GNFPHKVEILKKLPGIGDYTASAIVAIAFNHF-AVVVDTNIERIISRYFDIIKP  163 (356)
Q Consensus       103 ~~i~~~~~-------g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~-~~~vD~Nv~RVl~R~~~~~~~  163 (356)
                      +.+.+...       ...++..++|++|||||+.||..|+.++++.+ +.++|.+|+|++.|+++....
T Consensus       189 ~~i~~g~~~l~~l~~~~~~e~~~~L~~i~GIG~wtAd~ilLf~lg~~d~fPvD~~i~r~~~~~y~~~~~  257 (290)
T 3i0w_A          189 DRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAPDV  257 (290)
T ss_dssp             HHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCTTC
T ss_pred             HHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCC
T ss_conf             988438522888743770679999986799488999999999679999676349999999996599999


No 14 
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.60  E-value=6.1e-15  Score=124.20  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=125.1

Q ss_pred             CCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH--------------CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             8704676644673116120332658998774--------------89978987299899999974046345889998776
Q gi|254780479|r   37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQK--------------WPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCA  102 (356)
Q Consensus        37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~~--------------~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a  102 (356)
                      .|||..+|.-|+-||..|+.....+.++.++              |||++.||+++++++..+  |++ ++||+.|+..|
T Consensus       116 ~d~fE~lv~aIl~Qqis~~aA~~i~~rl~~~~G~~~~~~~~~~~~fPtp~~la~~~~~~L~~~--Gl~-~~Ka~~i~~lA  192 (295)
T 2jhn_A          116 MSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGLREC--GLS-RRKAELIVEIA  192 (295)
T ss_dssp             SSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHT--TCC-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHCCCHHHHHHC--CCC-HHHHHHHHHCC
T ss_conf             899999999998515219999999999999958866776301037999999984999999778--973-88999998501


Q ss_pred             HHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHH-HCC
Q ss_conf             7543005786873--1456888887778776677664349631312-43146665765197545735689998741-025
Q gi|254780479|r  103 DIIVKKYEGNFPH--KVEILKKLPGIGDYTASAIVAIAFNHFAVVV-DTNIERIISRYFDIIKPAPLYHKTIKNYA-RKI  178 (356)
Q Consensus       103 ~~i~~~~~g~~P~--~~~~l~~LpGiG~yta~ai~s~a~~~~~~~v-D~Nv~RVl~R~~~~~~~~~~~~k~l~~~~-~~~  178 (356)
                      +.+..+.-...|.  -.+.|++|||||+.||..|+.++++..+.++ |..|+|.+.|+|+.....+  .+.+..++ +.+
T Consensus       193 ~~~~~~~l~~~~~~e~~~~L~~i~GIGpWTA~~ill~~lg~d~fP~~D~~l~ral~~ly~~~~~~~--~~~~~~~a~e~w  270 (295)
T 2jhn_A          193 KEENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALGKNVFPADDLGVRRAVSRLYFNGEIQS--AEKVREIARERF  270 (295)
T ss_dssp             TCSSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCCTTCHHHHHHHHHHHSTTCCCC--HHHHHHHHHHHT
T ss_pred             CCCCHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHC
T ss_conf             135556541288588888998459948899999999816989522745999999999707888999--999999998757


Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             7852267899999999863204123
Q gi|254780479|r  179 TSTSRPGDFVQAMMDLGALICTSNK  203 (356)
Q Consensus       179 ~~~~~~~~~nQAlMdlGa~iC~p~~  203 (356)
                      -|  ..+-..+-|-.+++..|++++
T Consensus       271 ~P--yrsya~~~Lw~~~R~~~~k~~  293 (295)
T 2jhn_A          271 GR--FARDILFYLFLYDRFFSKKTE  293 (295)
T ss_dssp             GG--GHHHHHHHHHHHHHHTTC--C
T ss_pred             CC--HHHHHHHHHHHHCHHHCCCCC
T ss_conf             65--999999999984631155335


No 15 
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.45  E-value=4.2e-13  Score=111.24  Aligned_cols=113  Identities=18%  Similarity=0.231  Sum_probs=85.1

Q ss_pred             EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHH------HHHCCCCCCCCEECCCEEEEEEEEEEEEEEEE
Q ss_conf             200034137605776457201320474421111346721588------86301010000213735899831599999999
Q gi|254780479|r  241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNI------DTHSAPFTANWILCNTITHTFTHFTLTLFVWK  314 (356)
Q Consensus       241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~------~~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~  314 (356)
                      .+..++.++|+|||.||++++.|+|+|+||++..+.++....      .++..........+..+.|.|+|+++.+.+|.
T Consensus        24 vva~ii~~~~~iLl~kR~~~~~~~g~W~~PgG~ie~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (153)
T 3ees_A           24 VVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILILFYE  103 (153)
T ss_dssp             EEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEECCEEEEEECCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf             99999997999999994899999992989788984896777889999998629548862468899876799669999999


Q ss_pred             EECC----CCCCCCCCEEECHHHHHHCCCCHHHHHHH----HHCCCC
Q ss_conf             9807----76766781332278887479987899999----844823
Q gi|254780479|r  315 TIVP----QIVIIPDSTWHDAQNLANAALPTVMKKAL----SAGGIK  353 (356)
Q Consensus       315 ~~~~----~~~~~~~~~Wv~~~el~~~~LPs~~kKIL----~alg~~  353 (356)
                      +...    ......+++|+++++|.+++||.+++++|    +++|+.
T Consensus       104 ~~~~~~~~~~~e~~~~~Wv~~~el~~~~~~~~~~~ii~~l~k~l~~~  150 (153)
T 3ees_A          104 ILYWKGEPRAKHHMMLEWIHPEELKHRNIPEANRKILHKIYKALGLE  150 (153)
T ss_dssp             ECEEESCCCCSSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTTCC
T ss_pred             EEEECCEECCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99728816678550489988999351899850899999999974232


No 16 
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, structural genomics, PSI-2, protein structure initiative; 2.55A {Bacillus halodurans}
Probab=99.35  E-value=6.4e-12  Score=102.95  Aligned_cols=140  Identities=17%  Similarity=0.254  Sum_probs=110.7

Q ss_pred             CCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH----CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC--
Q ss_conf             8704676644673116120332658998774----8997898729989999997404634588999877675430057--
Q gi|254780479|r   37 PSPYKVWISEIMLQQTTVKTVEPYFKKFMQK----WPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYE--  110 (356)
Q Consensus        37 ~~py~v~vseimlqqT~v~~v~~~~~~~~~~----~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~--  110 (356)
                      .|||..+|.-|.-||..++.....|.|+.++    ||+++.+++++++++..+  ||+ +++++.++..|+.+.+...  
T Consensus        49 ~d~Fe~Lv~~Ii~QQiS~~aA~ti~~Rl~~~~G~~~p~p~~l~~~~~~~Lr~~--Gls-~~K~~~i~~la~~~~~g~~~~  125 (233)
T 2h56_A           49 PNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQA--GVS-KRKIEYIRHVCEHVESGRLDF  125 (233)
T ss_dssp             SCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHHT--TCC-HHHHHHHHHHHHHHHTTSSCH
T ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHC--CCC-HHHHHHHHHHHHHHHHCCCCC
T ss_conf             99899999999818314999999999999994899999688862999999777--997-878999999999998177520


Q ss_pred             ---CCCCC--HHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             ---86873--145688888777877667766434963-1312-43146665765197545735689998741025785
Q gi|254780479|r  111 ---GNFPH--KVEILKKLPGIGDYTASAIVAIAFNHF-AVVV-DTNIERIISRYFDIIKPAPLYHKTIKNYARKITST  181 (356)
Q Consensus       111 ---g~~P~--~~~~l~~LpGiG~yta~ai~s~a~~~~-~~~v-D~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~~~  181 (356)
                         ...+.  -.+.|+++||||+.||..|+-|+++.+ +.++ |..|+|.+.++++.....  .++.+..+++.+-|-
T Consensus       126 ~~l~~~~~~e~~~~L~~ikGIGpWTA~~illf~lgr~DvfP~~Dl~l~ra~~~ly~~~~~~--~~~~~~~~ae~w~Py  201 (233)
T 2h56_A          126 TELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNGEGD--GKKLLIYHGKAWAPY  201 (233)
T ss_dssp             HHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSSCSC--HHHHHHHHHGGGTTC
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CHHHHHHHHHCCCCH
T ss_conf             0101268889999988068848789999999968999789863799999999982888899--899999998727889


No 17 
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrolase, structural genomics; 2.10A {Bartonella henselae str}
Probab=99.26  E-value=1.8e-11  Score=99.70  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=90.0

Q ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC------CC--CE
Q ss_conf             00123443222222112320003413760577645720132047442111134672158886301010------00--02
Q gi|254780479|r  223 SHLLGINTIKKKRPMRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT------AN--WI  294 (356)
Q Consensus       223 ~~~~P~kk~KKkk~~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~------~~--~~  294 (356)
                      +...|...+.+..... ..+.++++.+|++||.||++++.++|+|+||++..+.+++......++...      ..  ..
T Consensus        15 ~~~~P~~~p~~~~~~~-vva~~ii~~~g~vLl~kR~~~~~~~g~W~~PgG~ve~~Et~~~aa~RE~~EE~gl~~~~~~~~   93 (158)
T 3hhj_A           15 QTQGPGSMPIKSSLLI-VVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLF   93 (158)
T ss_dssp             ------------CEEE-EEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCE
T ss_pred             HCCCCCCCCCCCCCEE-EEEEEEEECCCEEEEEECCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             3219877788897189-999999977998999993799999990999887898996689999999999858840353699


Q ss_pred             ECCCEEEEEEEEEEEEEEEEEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             1373589983159999999998077----6766781332278887479987899999844
Q gi|254780479|r  295 LCNTITHTFTHFTLTLFVWKTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       295 ~l~~ikH~fTH~~L~i~v~~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      ....+.|.++++.+.+.+|.+...+    .....+++|++++++.++++|.+.+++++.|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~ii~~L  153 (158)
T 3hhj_A           94 PLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEADKPLVQVL  153 (158)
T ss_dssp             EEEEEEEECSSCEEEEEEEEESCCBSCCCCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHH
T ss_pred             EEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHEEEEEEHHHHHHCCCCCCHHHHHHHH
T ss_conf             899986048985699999999806896288801358996499950388983089999999


No 18 
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.15  E-value=1.8e-11  Score=99.81  Aligned_cols=111  Identities=15%  Similarity=0.203  Sum_probs=86.9

Q ss_pred             EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHH------HHHHCCCCCCCCEECCCEEEEEEEEEEEEEEE
Q ss_conf             320003413760577645720132047442111134672158------88630101000021373589983159999999
Q gi|254780479|r  240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGN------IDTHSAPFTANWILCNTITHTFTHFTLTLFVW  313 (356)
Q Consensus       240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~------~~~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~  313 (356)
                      ..++++++.+|++||.||+.++.++|+|+||++..+.++...      +.++..........+..+.|.++|++..+.+|
T Consensus         6 v~v~ii~~~~~~iLl~kR~~~~~~~g~w~~PgG~ve~gEs~~~a~~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T 1mut_A            6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFW   85 (129)
T ss_dssp             CCCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCE
T ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEE
T ss_conf             99999997899999999149999999698978789889686789999999985986300589999999889978999999


Q ss_pred             EEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             998077----6766781332278887479987899999844
Q gi|254780479|r  314 KTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       314 ~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      .+....    .....+++|++.+++.+++||.+++++++.|
T Consensus        86 ~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~a~~~ii~~L  126 (129)
T 1mut_A           86 LVERWEGEPWGKEGQPGEWMSLVGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             EEEECSSCCCCCSSCCCEEEESSSCCTTTSCTTCHHHHHHH
T ss_pred             EEEEECCCCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHH
T ss_conf             99962685067844158998799934599984189999999


No 19 
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A*
Probab=99.14  E-value=3.9e-10  Score=90.36  Aligned_cols=134  Identities=20%  Similarity=0.266  Sum_probs=103.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHH-------------CCCHHHHHCCCHHHHHHHHHCCCH-HHHHHHHHH
Q ss_conf             678704676644673116120332658998774-------------899789872998999999740463-458899987
Q gi|254780479|r   35 SLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQK-------------WPTIFCLSSAKDEEILSAWAGLGY-YTRARNLKK  100 (356)
Q Consensus        35 ~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~-------------~P~~~~la~a~~~~vl~~w~gLGy-y~Rar~l~~  100 (356)
                      ..-|||..+|.-|.-||..|+.....+.++.++             |||++.+|+++++++    ..+|. .+||+.|+.
T Consensus       109 ~~~d~fE~lvraIlgQQvS~~aA~~i~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~L----r~~Gls~~ka~~i~~  184 (282)
T 1mpg_A          109 GCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQAL----KALGMPLKRAEALIH  184 (282)
T ss_dssp             CCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHH----HHTTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCHHHH----HHCCCCCHHHHHHHH
T ss_conf             9999999999999827451999999999999986887776765457777999974999999----654886047999999


Q ss_pred             HHHHHHHCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EC-CCCHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             767543005-786----87314568888877787766776643496313-12-431466657651975457356899987
Q gi|254780479|r  101 CADIIVKKY-EGN----FPHKVEILKKLPGIGDYTASAIVAIAFNHFAV-VV-DTNIERIISRYFDIIKPAPLYHKTIKN  173 (356)
Q Consensus       101 ~a~~i~~~~-~g~----~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~-~v-D~Nv~RVl~R~~~~~~~~~~~~k~l~~  173 (356)
                      .|+.+.+.- +-.    ..+-.+.|++|||||+.||..|+-++++.+.. ++ |-.++|.+.++         ..+.+..
T Consensus       185 lA~~~~~g~l~~~~~~~~ee~~~~L~~l~GIGpWTA~~vll~~lg~~D~fp~~Dl~l~~~~~~l---------~~~~~~~  255 (282)
T 1mpg_A          185 LANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGM---------TPAQIRR  255 (282)
T ss_dssp             HHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTTC---------CHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC---------CHHHHHH
T ss_conf             9999974984213436889999999976798869999999997699883874349999874108---------9999999


Q ss_pred             HHHCCCCC
Q ss_conf             41025785
Q gi|254780479|r  174 YARKITST  181 (356)
Q Consensus       174 ~~~~~~~~  181 (356)
                      +++.+-|-
T Consensus       256 ~ae~w~P~  263 (282)
T 1mpg_A          256 YAERWKPW  263 (282)
T ss_dssp             HHGGGTTC
T ss_pred             HHHHCCCH
T ss_conf             99855699


No 20 
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=99.07  E-value=4.2e-10  Score=90.15  Aligned_cols=108  Identities=14%  Similarity=0.086  Sum_probs=80.1

Q ss_pred             EEEECCCEEEEEECCCC--HHHHCCCCCCCCCCCCCCCHHHH------HHCCCCCCCCEECCCEEEEEEEEEEEEEEEEE
Q ss_conf             03413760577645720--13204744211113467215888------63010100002137358998315999999999
Q gi|254780479|r  244 IAITNDNRILLRKRTNT--RLLEGMDELPGSAWSSTKDGNID------THSAPFTANWILCNTITHTFTHFTLTLFVWKT  315 (356)
Q Consensus       244 vii~~~~kiLL~KRp~~--gll~GLwEFP~~e~~~~~~~~~~------~~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~  315 (356)
                      .++.+++++||.||...  ..++|+|+||++..+.+++....      ++..........+..+.|.++++.+.+.+|.+
T Consensus        11 aii~~~~~~Ll~~R~~~~~~~~~g~W~~PGG~ie~gEs~~ea~~RE~~EE~Gi~v~~~~~l~~~~~~~~~~~~~~~~f~~   90 (140)
T 3gwy_A           11 AVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLC   90 (140)
T ss_dssp             EEEEETTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEEEEEEEE
T ss_pred             EEEEECCEEEEEEECCCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEEEEEEEEE
T ss_conf             99997999999997798888879929898979969999899999999885096414201788998617996899999999


Q ss_pred             ECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             8077----67667813322788874799878999998448
Q gi|254780479|r  316 IVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAGG  351 (356)
Q Consensus       316 ~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg  351 (356)
                      ....    .....+++|++++++.+++|+.+.++||+.|-
T Consensus        91 ~~~~~~~~~~E~~~~~Wv~~~el~~l~~~~ad~~il~~L~  130 (140)
T 3gwy_A           91 HPVGQRYVLKEHIAAQWLSTREMAILDWAEADKPIVRKIS  130 (140)
T ss_dssp             EECCSCCCCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHH
T ss_pred             EEECCCCCCCCEEEEEEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf             9828954788100479977999723899851799999999


No 21 
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.70A {Methanosarcina mazei}
Probab=98.77  E-value=5.2e-08  Score=75.40  Aligned_cols=115  Identities=12%  Similarity=0.151  Sum_probs=79.8

Q ss_pred             CCEEEEEEEEEECCCEEEEEECCC-CHHHHCCCCCCCCCCCCCCCHHHHH------HCCCCCCCCEECCCEEEEEEEEEE
Q ss_conf             211232000341376057764572-0132047442111134672158886------301010000213735899831599
Q gi|254780479|r  236 PMRTGAVFIAITNDNRILLRKRTN-TRLLEGMDELPGSAWSSTKDGNIDT------HSAPFTANWILCNTITHTFTHFTL  308 (356)
Q Consensus       236 ~~r~~~~~vii~~~~kiLL~KRp~-~gll~GLwEFP~~e~~~~~~~~~~~------~~~~~~~~~~~l~~ikH~fTH~~L  308 (356)
                      |......++|.+.+|++||.||.. ++.++|+|+||++..+.+++.....      +..........++.+.|.+++.+.
T Consensus         6 p~~~~V~aii~n~~g~iLl~kR~~~~~~~~g~W~~PgG~ie~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~   85 (153)
T 3grn_A            6 PYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKV   85 (153)
T ss_dssp             CEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEE
T ss_pred             CEEEEEEEEEEECCCEEEEEEECCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEE
T ss_conf             87899999999899929999944889999991999773140898957733167999879813120699999888699879


Q ss_pred             EEEEEEEECCCC-----CCCCCCEEECHHHHHHCC-CCHHHHHHHHHC
Q ss_conf             999999980776-----766781332278887479-987899999844
Q gi|254780479|r  309 TLFVWKTIVPQI-----VIIPDSTWHDAQNLANAA-LPTVMKKALSAG  350 (356)
Q Consensus       309 ~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~~~-LPs~~kKIL~al  350 (356)
                      ...+|.+.....     ....+++|++.+++.++. +|...+.+++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~p~~~~~~~~~~  133 (153)
T 3grn_A           86 IAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFERF  133 (153)
T ss_dssp             EEEEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHH
T ss_pred             EEEEEEEEEECCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHH
T ss_conf             999999998079626994224789977999842899937899999999


No 22 
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=98.70  E-value=1.1e-07  Score=73.02  Aligned_cols=111  Identities=15%  Similarity=0.136  Sum_probs=68.5

Q ss_pred             EEEEEECCCEEEEEECCCC-HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEC-----CCE------------EEEE
Q ss_conf             0003413760577645720-132047442111134672158886301010000213-----735------------8998
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNT-RLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILC-----NTI------------THTF  303 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l-----~~i------------kH~f  303 (356)
                      +..+++.+|++||.||+++ +.+.|+|+||++..+.++........+..++....+     ..+            .+..
T Consensus        31 v~~ii~~~gkvLL~kR~~~~~~~~g~W~~PGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (165)
T 3oga_A           31 VCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQ  110 (165)
T ss_dssp             EEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--CCE
T ss_pred             EEEEEECCCEEEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEECCEEEEEEECCCEEEECCCCCC
T ss_conf             99999889989999917999999992999793895998978988899999879705631112268613301220147886


Q ss_pred             EEEEEEEEEEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             3159999999998077-----676678133227888747998789999984482
Q gi|254780479|r  304 THFTLTLFVWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMKKALSAGGI  352 (356)
Q Consensus       304 TH~~L~i~v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~  352 (356)
                      .++.....+|.+....     ..+..++.|++++++.+++++..+|++|...|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~l~~~~r~~l~~~~~  164 (165)
T 3oga_A          111 EEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGL  164 (165)
T ss_dssp             EEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGGSCBCHHHHHHHHHTTC
T ss_pred             CEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCHHHHHHHHHHCC
T ss_conf             349999999999617897069831578999879997159999899999886104


No 23 
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=98.13  E-value=2.7e-05  Score=56.28  Aligned_cols=104  Identities=11%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEEE-EE----EEEEEE
Q ss_conf             00341376057764572013204744211113467215888630101000------02137358998-31----599999
Q gi|254780479|r  243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTITHTF-TH----FTLTLF  311 (356)
Q Consensus       243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~f-TH----~~L~i~  311 (356)
                      .+++.+++++||.||+..    |.|.||++..+.++.......++..++.      ....+.+.+.+ .+    ....+.
T Consensus         8 ~ciI~~~~kvLL~~r~~~----g~W~~PGG~ie~gEt~~eAa~REv~EEtGl~v~~~~l~~v~~~~~~~~~~~~~~~~~~   83 (188)
T 3fk9_A            8 NCIVVDHDQVLLLQKPRR----GWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLF   83 (188)
T ss_dssp             EEEEEETTEEEEEECTTT----CCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEECCEEEEEEECCC----CEEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCEEEEEEE
T ss_conf             999996999999997899----9698943395799899999999989986876667369999989844799604699999


Q ss_pred             EEEEECCCC-----CCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             999980776-----766781332278887479987899999844
Q gi|254780479|r  312 VWKTIVPQI-----VIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       312 v~~~~~~~~-----~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      +|.+.....     ....+.+|++.+++.+++++..+++++..+
T Consensus        84 ~f~~~~~~g~~~~~~e~~~~~Wv~~del~~l~l~~~d~~il~~~  127 (188)
T 3fk9_A           84 TFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDKWIFKHV  127 (188)
T ss_dssp             EEEESCEESCCCSEETTEEEEEEEGGGGGGSCCCHHHHHHHHHH
T ss_pred             EEEEECCCCEECCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHH
T ss_conf             99998787817699942247998899952699982289999999


No 24 
>1iry_A HMTH1; nudix motif(G37-L59), hydrolase; NMR {Homo sapiens} SCOP: d.113.1.1
Probab=98.09  E-value=4.5e-06  Score=61.72  Aligned_cols=106  Identities=8%  Similarity=-0.047  Sum_probs=64.8

Q ss_pred             EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCC------CCEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf             0034137605776457201320474421111346721588863010100------0021373589983159999999998
Q gi|254780479|r  243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTA------NWILCNTITHTFTHFTLTLFVWKTI  316 (356)
Q Consensus       243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~------~~~~l~~ikH~fTH~~L~i~v~~~~  316 (356)
                      .+++.++|++||.+|. ++..+|+|+||++..+.+++......++...+      .....+.+.|.+......+.++...
T Consensus         9 ~v~i~~~~~vLL~~r~-~~~~~G~W~~PGG~ie~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (156)
T 1iry_A            9 LVLVLQPQRVLLGMKK-RGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFC   87 (156)
T ss_dssp             EECEECSSEEEEEEES-SSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCEEEEEEEC
T ss_pred             EEEEEECCEEEEEEEC-CCCCCCEEECCEEEEECCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEECCCCCEEEEEEEEE
T ss_conf             9999989999999907-899999599817657689998999999999975907567668868998618998899999999


Q ss_pred             CC------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH
Q ss_conf             07------7676678133227888747998789999984
Q gi|254780479|r  317 VP------QIVIIPDSTWHDAQNLANAALPTVMKKALSA  349 (356)
Q Consensus       317 ~~------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a  349 (356)
                      ..      ......+..|++.+++..++++...++++..
T Consensus        88 ~~~~~~~~~~~e~~~~~w~~~~~l~~~~~~~~~~~~l~~  126 (156)
T 1iry_A           88 TDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPL  126 (156)
T ss_dssp             CCCBCSCCCCCSSEEEEEEETTCCCSTTTCSSHHHHHHH
T ss_pred             EEECCCCCCCCCHHHEEEEEHHHCCCCCCCCHHHHHHHH
T ss_conf             950256408994260468459997868899018999999


No 25 
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=98.07  E-value=8.2e-05  Score=52.88  Aligned_cols=106  Identities=9%  Similarity=-0.035  Sum_probs=61.5

Q ss_pred             EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCC------CCCCCEECCCEEEEEEE----EEEE
Q ss_conf             3200034137605776457201320474421111346721588863010------10000213735899831----5999
Q gi|254780479|r  240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAP------FTANWILCNTITHTFTH----FTLT  309 (356)
Q Consensus       240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~------~~~~~~~l~~ikH~fTH----~~L~  309 (356)
                      ..+..++.++|++||.||..     |.|.||++..+.+++.......+.      .......++.+.+.+++    ....
T Consensus         5 ~aag~vv~~~~kiLl~~r~~-----g~W~lPgG~~e~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (134)
T 2pbt_A            5 FSAGGVLFKDGEVLLIKTPS-----NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKT   79 (134)
T ss_dssp             EEEEEEEEETTEEEEEECTT-----SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEECC-----CCEECCEEEECCCCCHHHHHHHHHHHEECEEEEEEEEEEEEEEEECCCCCEEEEE
T ss_conf             99999999999999999579-----9899974361799899999987654312527898325645667853799708899


Q ss_pred             EEEEEEECC----C-CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             999999807----7-6766781332278887479987899999844
Q gi|254780479|r  310 LFVWKTIVP----Q-IVIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       310 i~v~~~~~~----~-~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      +.+|.+...    . .....+.+|++.+++.++......+++|+.+
T Consensus        80 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~r~il~~~  125 (134)
T 2pbt_A           80 VKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKA  125 (134)
T ss_dssp             EEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHCCSHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCCCCHHHEEEEEEEHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999659958579133388998699987541896699999999


No 26 
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=97.98  E-value=2.9e-05  Score=56.08  Aligned_cols=116  Identities=9%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             CCCEEEEEEEEEE-CCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEEEE--E
Q ss_conf             2211232000341-376057764572013204744211113467215888630101000------021373589983--1
Q gi|254780479|r  235 RPMRTGAVFIAIT-NDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTITHTFT--H  305 (356)
Q Consensus       235 k~~r~~~~~vii~-~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~fT--H  305 (356)
                      .|.......+|.+ .++++||.||. +.-|.|.|+||++..+.+++.......+...+.      ...++.+.+.++  +
T Consensus         7 ~p~~~~~~v~I~~~~~~~lLl~~r~-~~~~~~~W~~PGG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T 3exq_A            7 QPVELVTMVMVTDPETQRVLVEDKV-NVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ   85 (161)
T ss_dssp             CCEEEEEEEEEBCTTTCCEEEECCC-CCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS
T ss_pred             CCEEEEEEEEEEECCCCEEEEEEEC-CCCCCCCEECCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCC
T ss_conf             7737999999997999999999969-999899499966536189998999999999986981412599999976228998


Q ss_pred             EEEEEEEEEEECC----CCCCCCCCEEECHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             5999999999807----767667813322788874799878999998448
Q gi|254780479|r  306 FTLTLFVWKTIVP----QIVIIPDSTWHDAQNLANAALPTVMKKALSAGG  351 (356)
Q Consensus       306 ~~L~i~v~~~~~~----~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg  351 (356)
                      .+....+|.+...    ......+.+|++.+++.++.++..+++++....
T Consensus        86 ~~~~~~~f~~~~~~~~~~~~e~~e~~Wv~~~el~~~~~~~~~~~~l~~~~  135 (161)
T 3exq_A           86 HRKLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAASLPEFLQVFT  135 (161)
T ss_dssp             SEEEEEEEEECCEESCCCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHT
T ss_pred             EEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHH
T ss_conf             39999999997166610799874689989999876889566999999862


No 27 
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=97.93  E-value=5e-05  Score=54.40  Aligned_cols=111  Identities=11%  Similarity=0.113  Sum_probs=64.3

Q ss_pred             CEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEC--CCEEEEE---EEEEEEEE
Q ss_conf             112320003413760577645720132047442111134672158886301010000213--7358998---31599999
Q gi|254780479|r  237 MRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILC--NTITHTF---THFTLTLF  311 (356)
Q Consensus       237 ~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l--~~ikH~f---TH~~L~i~  311 (356)
                      .......++++.+|++||.||.. +-+.|.|+||++..+.++........+..++.....  ..+...+   .|+.  ..
T Consensus        19 ~~~~v~~vi~~~~~~vLl~~r~~-~~~~g~W~~PGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~--~~   95 (156)
T 3gg6_A           19 VCYVVLAVFLSEQDEVLLIQEAK-RECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERGPSWV--RF   95 (156)
T ss_dssp             CEEEEEEECBCTTSEEEEEECCC-TTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESSTTEE--EE
T ss_pred             CCEEEEEEEEECCCEEEEEEECC-CCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEECCCCEE--EE
T ss_conf             76899999996899999999768-9999969997864608999899887888886484778624999981699899--99


Q ss_pred             EEEEE-----CCCC----CCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             99998-----0776----766781332278887479987899999844
Q gi|254780479|r  312 VWKTI-----VPQI----VIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       312 v~~~~-----~~~~----~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      +|.+.     ....    ....+..|++++++.....+.-+.++++.+
T Consensus        96 ~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~  143 (156)
T 3gg6_A           96 VFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELA  143 (156)
T ss_dssp             EEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCHHHHHHHH
T ss_conf             999999278214788898546999998499935566798469999999


No 28 
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=97.91  E-value=9.7e-05  Score=52.36  Aligned_cols=112  Identities=8%  Similarity=-0.015  Sum_probs=63.6

Q ss_pred             EEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE-EEEEEE
Q ss_conf             2320003413760577645720132047442111134672158886301010000------213735899831-599999
Q gi|254780479|r  239 TGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH-FTLTLF  311 (356)
Q Consensus       239 ~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH-~~L~i~  311 (356)
                      ....+++++.++++||.||..     |.|+||++..+.+++......++...+..      ..+..+.|...+ ....++
T Consensus         3 v~agavv~~~~~~vLl~~~~~-----g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   77 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVH   77 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT-----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred             EEEEEEEEECCCEEEEEECCC-----CCEECCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEECCCCEEEEEE
T ss_conf             999999998998999999079-----949998823559989999999999887380589866777899768997599999


Q ss_pred             EEEEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf             99998077----676678133227888747998789999984482379
Q gi|254780479|r  312 VWKTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAGGIKVP  355 (356)
Q Consensus       312 v~~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~~~p  355 (356)
                      .|.+....    .....+.+|++.+++.++......+++|+.+-.+.|
T Consensus        78 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~~~lp  125 (126)
T 1vcd_A           78 WFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLP  125 (126)
T ss_dssp             EEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCCCCCEEEEEEEHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf             999997699679845228999889997632299669999999998679


No 29 
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=97.89  E-value=3e-05  Score=55.95  Aligned_cols=113  Identities=5%  Similarity=0.002  Sum_probs=60.5

Q ss_pred             EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEE----------------
Q ss_conf             3200034137605776457201320474421111346721588863010100002137358998----------------
Q gi|254780479|r  240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTF----------------  303 (356)
Q Consensus       240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~f----------------  303 (356)
                      ....+|++.+|++||.||...    |.|+||++..+.++........+...+.......+....                
T Consensus        10 ~Vg~vi~n~~gkvLl~kR~~~----g~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (164)
T 2kdv_A           10 NVGIVICNRQGQVMWARRFGQ----HSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVR   85 (164)
T ss_dssp             EEEEEEECTTSEEEEEEETTC----CCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTCC
T ss_pred             EEEEEEEECCCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEE
T ss_conf             189999968992999998899----9189991660799898999999999875645444431268804302457642010


Q ss_pred             -----EEEEEEEEEEEEECC-----------CCCCCCCCEEECHHHHHHCCCCH---H-------HHHHHHHCCCCCCC
Q ss_conf             -----315999999999807-----------76766781332278887479987---8-------99999844823799
Q gi|254780479|r  304 -----THFTLTLFVWKTIVP-----------QIVIIPDSTWHDAQNLANAALPT---V-------MKKALSAGGIKVPQ  356 (356)
Q Consensus       304 -----TH~~L~i~v~~~~~~-----------~~~~~~~~~Wv~~~el~~~~LPs---~-------~kKIL~alg~~~p~  356 (356)
                           ..+....+.|.+...           ......+++|++++++.+..+|-   .       .+|+|..+-...||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~fk~~v~~~~l~~f~~~i~~~~~~~p~  164 (164)
T 2kdv_A           86 WDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQENTPK  164 (164)
T ss_dssp             TTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             0035652230799999999358653035779983315748677999877511106999999999999999988753899


No 30 
>2b06_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=97.87  E-value=9.5e-05  Score=52.42  Aligned_cols=114  Identities=11%  Similarity=0.068  Sum_probs=64.9

Q ss_pred             EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE-EEEEE
Q ss_conf             12320003413760577645720132047442111134672158886301010000------213735899831-59999
Q gi|254780479|r  238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH-FTLTL  310 (356)
Q Consensus       238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH-~~L~i  310 (356)
                      ....++++-+.++++||.+|..++-..|.|+||++..+.++.......++..++..      ..++.+.+.+.. .+..+
T Consensus         9 ~~~i~~i~~~~~~~vLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   88 (155)
T 2b06_A            9 LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIV   88 (155)
T ss_dssp             EEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEECCCCCCCCCEECCEEEECCCCCHHHHHHHHHHHHHCCEEECCEEEEEEEEECCCCCEEEE
T ss_conf             98999999899999999998899999988999303286999999999999999869334312699999775399989999


Q ss_pred             EEEEEEC----CCCCCCCCCEEECHHHHHHCCCCHHHHHHHHHCC
Q ss_conf             9999980----7767667813322788874799878999998448
Q gi|254780479|r  311 FVWKTIV----PQIVIIPDSTWHDAQNLANAALPTVMKKALSAGG  351 (356)
Q Consensus       311 ~v~~~~~----~~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg  351 (356)
                      .+|.+..    .......+..|++.+++.++.++..+..+++.+-
T Consensus        89 ~~~~~~~~~~~~~~~e~~~~~w~~~~el~~l~~~~~~~~~~~~~~  133 (155)
T 2b06_A           89 ICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMME  133 (155)
T ss_dssp             EEEEECEEEECCCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHH
T ss_conf             999999668723899406599988999136999833599999976


No 31 
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=97.85  E-value=3.7e-05  Score=55.33  Aligned_cols=108  Identities=14%  Similarity=0.024  Sum_probs=61.3

Q ss_pred             EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEEEEEEEE
Q ss_conf             12320003413760577645720132047442111134672158886301010000------213735899831599999
Q gi|254780479|r  238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTHFTLTLF  311 (356)
Q Consensus       238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH~~L~i~  311 (356)
                      +....++++ +++++||.||...   .|.|+||++..+.+++.......+..++..      ..+..+.+...+.+....
T Consensus        23 ~v~v~aii~-~d~kvLL~kr~~~---~~~W~lPGG~ie~gEs~~eaa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   98 (171)
T 3id9_A           23 QVRVTGILI-EDEKVLLVKQKVA---NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLLHI   98 (171)
T ss_dssp             EEEEEEEEE-ETTEEEEEECSST---TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEEEE
T ss_pred             EEEEEEEEE-ECCEEEEEEEECC---CCCEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEE
T ss_conf             769999999-8999999997089---995989445770897989999999999869446883699999017899979999


Q ss_pred             EEEEECC-----------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH
Q ss_conf             9999807-----------7676678133227888747998789999984
Q gi|254780479|r  312 VWKTIVP-----------QIVIIPDSTWHDAQNLANAALPTVMKKALSA  349 (356)
Q Consensus       312 v~~~~~~-----------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a  349 (356)
                      +|.+...           ......+..|++.++|..+.+|..+.++|+.
T Consensus        99 ~f~~~~~~~~~~~~~~e~~~~e~~~~~Wv~~~eL~~~~~~~~~~~~i~~  147 (171)
T 3id9_A           99 TFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETFINLISG  147 (171)
T ss_dssp             EEEEEEC-------------CCCCCEEEEETGGGGGGTCCTTCSHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCHHHEEEEEEEEHHHCCCCCCCHHHHHHHHH
T ss_conf             9999992683258976335112135788429992869999789999998


No 32 
>2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4}
Probab=97.66  E-value=0.0003  Score=48.91  Aligned_cols=101  Identities=18%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             EEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC------CCCEECCCEEEEEEE----EEEEEEEE
Q ss_conf             03413760577645720132047442111134672158886301010------000213735899831----59999999
Q gi|254780479|r  244 IAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT------ANWILCNTITHTFTH----FTLTLFVW  313 (356)
Q Consensus       244 vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~------~~~~~l~~ikH~fTH----~~L~i~v~  313 (356)
                      .++.++|++||.|+.      |.|.||++..+.++........+...      .....++...+.+.+    ++....+|
T Consensus        24 ~ii~~~~kvLl~r~~------g~w~~PGG~ve~gEt~~~aa~RE~~EEtGl~i~~~~~~~~~~~~~~~~~~~~~~~~~~f   97 (154)
T 2pqv_A           24 ALIVQNHKLLVTKDK------GKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHY   97 (154)
T ss_dssp             ECCEETTEEEEEEET------TEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEECCEEEEEEEC------CEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEECCEEEEEEEECCCCCCEEEEEEEEE
T ss_conf             999999999999869------98999802881998989988899999869536862399999877146994179999999


Q ss_pred             EEECCCCC--------CCCCCEEECHHHHHHCCC-CHHHHHHHHHC
Q ss_conf             99807767--------667813322788874799-87899999844
Q gi|254780479|r  314 KTIVPQIV--------IIPDSTWHDAQNLANAAL-PTVMKKALSAG  350 (356)
Q Consensus       314 ~~~~~~~~--------~~~~~~Wv~~~el~~~~L-Ps~~kKIL~al  350 (356)
                      .+......        ...++.|++.+++.++++ |...+.+|..+
T Consensus        98 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~P~~l~~~L~~~  143 (154)
T 2pqv_A           98 LVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDW  143 (154)
T ss_dssp             EEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEESTTHHHHTTTC
T ss_pred             EEEECCCCCCCCCCCCCEEEEEEEEHHHHHHCCCCCHHHHHHHHHH
T ss_conf             9997689623369973478999989999514768948999999887


No 33 
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=97.66  E-value=0.00011  Score=51.89  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=64.6

Q ss_pred             EEEEEEEE--ECCCEEEEEECCCC-HHHHCCCCCCCCCCCCCCCHHHH------HHCCCCCCCCEECCCEEEEEEEEEEE
Q ss_conf             23200034--13760577645720-13204744211113467215888------63010100002137358998315999
Q gi|254780479|r  239 TGAVFIAI--TNDNRILLRKRTNT-RLLEGMDELPGSAWSSTKDGNID------THSAPFTANWILCNTITHTFTHFTLT  309 (356)
Q Consensus       239 ~~~~~vii--~~~~kiLL~KRp~~-gll~GLwEFP~~e~~~~~~~~~~------~~~~~~~~~~~~l~~ikH~fTH~~L~  309 (356)
                      ...+++++  +.+.++||.||+.. +.++|.|+||++..+.+++....      ++..........++.+.+.+|+....
T Consensus        35 ~aaVli~l~~~~~~~vll~~Rs~~l~~h~G~~sfPGG~ie~gEt~~~aA~RE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~  114 (194)
T 1nqz_A           35 RAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFH  114 (194)
T ss_dssp             EEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEE
T ss_pred             EEEEEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCE
T ss_conf             14999999979997899998588889999979588756546765789999999997564652367740256277136647


Q ss_pred             EEEEEEECCC--------CCCCCCCEEECHHHHHHCCC
Q ss_conf             9999998077--------67667813322788874799
Q gi|254780479|r  310 LFVWKTIVPQ--------IVIIPDSTWHDAQNLANAAL  339 (356)
Q Consensus       310 i~v~~~~~~~--------~~~~~~~~Wv~~~el~~~~L  339 (356)
                      +++|.+.+..        ..+..+..|++++++.+.+.
T Consensus       115 V~p~v~~~~~~~~~~~~~~~EV~~v~~vpl~~L~~~~~  152 (194)
T 1nqz_A          115 VTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             EEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             EEEEEEEECCCCCCCCCCCCCEEEEEECCHHHHHCCCC
T ss_conf             99999998475443447898368999716999606754


No 34 
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=97.64  E-value=5.4e-05  Score=54.13  Aligned_cols=110  Identities=14%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEE-----------------
Q ss_conf             123200034137605776457201320474421111346721588863010100002137358-----------------
Q gi|254780479|r  238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTIT-----------------  300 (356)
Q Consensus       238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ik-----------------  300 (356)
                      |.....+|+|.+|++||.||...   .|.|+||++..+.+++.......+...+.......+.                 
T Consensus        14 R~~Vgvvi~n~~~~vLl~kR~~~---~~~W~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   90 (165)
T 1f3y_A           14 RRNVGICLMNNDKKIFAASRLDI---PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVRE   90 (165)
T ss_dssp             CCEEEEEEECTTSCEEEEEETTE---EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHH
T ss_pred             CCCEEEEEEECCCEEEEEEECCC---CCCEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEECCCHHHCC
T ss_conf             66479999948994999997799---997889902675999878999999998761334332011145235425401001


Q ss_pred             -----E--EEEEEEEEEEEEEEE--CCC---------CCCCCCCEEECHHHHHHCCCC--H-HHHHHHHHC
Q ss_conf             -----9--983159999999998--077---------676678133227888747998--7-899999844
Q gi|254780479|r  301 -----H--TFTHFTLTLFVWKTI--VPQ---------IVIIPDSTWHDAQNLANAALP--T-VMKKALSAG  350 (356)
Q Consensus       301 -----H--~fTH~~L~i~v~~~~--~~~---------~~~~~~~~Wv~~~el~~~~LP--s-~~kKIL~al  350 (356)
                           +  .+.............  ...         .....+++|++.+++.+..+|  . ..+++|+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~E~~e~rW~~~~el~~~iv~fKk~vy~~~l~~f  161 (165)
T 1f3y_A           91 KLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVF  161 (165)
T ss_dssp             HHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCEEEEEEEEEEECCCCEEEECCCCCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             00055068634316799999992686226414889998503783878799977650021599999999998


No 35 
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=97.63  E-value=0.00046  Score=47.63  Aligned_cols=100  Identities=11%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             CEEEEEEEEEECCCEEEEEECCCC-HHHHCCCCCC-CCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEEEEEEEE
Q ss_conf             112320003413760577645720-1320474421-1113467215888630101000------0213735899831599
Q gi|254780479|r  237 MRTGAVFIAITNDNRILLRKRTNT-RLLEGMDELP-GSAWSSTKDGNIDTHSAPFTAN------WILCNTITHTFTHFTL  308 (356)
Q Consensus       237 ~r~~~~~vii~~~~kiLL~KRp~~-gll~GLwEFP-~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~fTH~~L  308 (356)
                      .+... .++.+.+|++||.||+.. ..+.|+|++| ++..+.+++...........+.      ...++.+.+.-.+...
T Consensus        37 h~~v~-v~v~~~~g~iLl~rRs~~k~~~pg~W~~~~GG~ve~GEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~  115 (180)
T 2fkb_A           37 HRATY-IVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRV  115 (180)
T ss_dssp             EEEEE-EEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEE
T ss_pred             EEEEE-EEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCEE
T ss_conf             57999-99995999799999179888999847267884458997989999999999869612121388899952898579


Q ss_pred             EEEEEEEECCCC-----CCCCCCEEECHHHHHHC
Q ss_conf             999999980776-----76678133227888747
Q gi|254780479|r  309 TLFVWKTIVPQI-----VIIPDSTWHDAQNLANA  337 (356)
Q Consensus       309 ~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~~  337 (356)
                      ...+|.+.....     ....++.|++.+++...
T Consensus       116 ~~~~~~~~~~~~~~~~~~Ev~e~~W~~~~el~~~  149 (180)
T 2fkb_A          116 WGALFSCVSHGPFALQEDEVSEVCWLTPEEITAR  149 (180)
T ss_dssp             EEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTT
T ss_pred             EEEEEEEEECCCCCCCHHHEEEEEEEEHHHHHHH
T ss_conf             9999999889986699679259999769998632


No 36 
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=97.63  E-value=0.00012  Score=51.78  Aligned_cols=101  Identities=12%  Similarity=0.116  Sum_probs=61.8

Q ss_pred             EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCC----EEEEEEEEEEEEEEEEE
Q ss_conf             32000341376057764572013204744211113467215888630101000021373----58998315999999999
Q gi|254780479|r  240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNT----ITHTFTHFTLTLFVWKT  315 (356)
Q Consensus       240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~----ikH~fTH~~L~i~v~~~  315 (356)
                      ..+.+++..++++||.||... -..|.|.+|++..+.+++.......+..++....+..    ..+.+.+.+..+.+|.+
T Consensus        41 v~v~~ii~~~~~vLLv~r~~~-~~~g~W~lPGG~ve~GEs~eeaa~REv~EEtGl~v~~~~l~~~~~~~~~~~~~~~f~~  119 (189)
T 3cng_A           41 VIVGCIPEWENKVLLCKRAIA-PYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLPHISQVYMLFRA  119 (189)
T ss_dssp             EEEEEEEEETTEEEEEEESSS-SSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EEEEEEEECCCCEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCEEEEEEEE
T ss_conf             599999984992889963689-9998582884235689899999889988754926887589889715889736999999


Q ss_pred             ECCCC-----CCCCCCEEECHHHHH--HCCCCH
Q ss_conf             80776-----766781332278887--479987
Q gi|254780479|r  316 IVPQI-----VIIPDSTWHDAQNLA--NAALPT  341 (356)
Q Consensus       316 ~~~~~-----~~~~~~~Wv~~~el~--~~~LPs  341 (356)
                      .+...     ....+.+|++.++|.  .+++|+
T Consensus       120 ~~~~~~~~~~~E~~e~~wf~~~elp~~~laf~~  152 (189)
T 3cng_A          120 KLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRV  152 (189)
T ss_dssp             EECCSCCCCCTTEEEEEEECTTTCCGGGBSCHH
T ss_pred             EECCCCCCCCCCCCCCEEEEHHHCCCCCCCCHH
T ss_conf             825894447870102579879999850017668


No 37 
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=97.61  E-value=0.0002  Score=50.08  Aligned_cols=104  Identities=13%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC------CEEEEEEEEEEEEEEEE
Q ss_conf             200034137605776457201320474421111346721588863010100002137------35899831599999999
Q gi|254780479|r  241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN------TITHTFTHFTLTLFVWK  314 (356)
Q Consensus       241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~------~ikH~fTH~~L~i~v~~  314 (356)
                      .+.+++.+++++||.++...  -+|+|.||++..+.++........+..++......      +....|.|.  -+..|.
T Consensus       142 ~vivli~~~~~iLL~R~~~~--~~g~WslPgGfVE~GEt~eeAa~REv~EEtGl~v~~~~~~~s~~~~~~~~--l~~~F~  217 (269)
T 1vk6_A          142 CIIVAIRRDDSILLAQHTRH--RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQS--LMTAFM  217 (269)
T ss_dssp             EEEEEEEETTEEEEEEETTT--CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEE--EEEEEE
T ss_pred             EEEEEEEECCEEEEEEECCC--CCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCE--EEEEEE
T ss_conf             59999983998999973368--99857601665438998999988987652234998667999953798887--999999


Q ss_pred             EECC------CCCCCCCCEEECHHHHHHCCCCH-HHHHHHH
Q ss_conf             9807------76766781332278887479987-8999998
Q gi|254780479|r  315 TIVP------QIVIIPDSTWHDAQNLANAALPT-VMKKALS  348 (356)
Q Consensus       315 ~~~~------~~~~~~~~~Wv~~~el~~~~LPs-~~kKIL~  348 (356)
                      +...      +..+..+.+|++.+++..+|.+. ..+++|+
T Consensus       218 a~~~~gei~~d~~Ei~ea~WFs~deLp~LP~~~sIAr~LI~  258 (269)
T 1vk6_A          218 AEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIE  258 (269)
T ss_dssp             EEEEECCCCCCTTTEEEEEEEETTSCCSCCCTTSHHHHHHH
T ss_pred             EEECCCCCCCCCCCEEEEEEECHHHCCCCCCCCCHHHHHHH
T ss_conf             99878954699324527889878983107996129999999


No 38 
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneopterin triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=97.59  E-value=0.00033  Score=48.60  Aligned_cols=107  Identities=14%  Similarity=0.082  Sum_probs=61.6

Q ss_pred             EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCC-------------EEE
Q ss_conf             200034137605776457201320474421111346721588863010100002------1373-------------589
Q gi|254780479|r  241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNT-------------ITH  301 (356)
Q Consensus       241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~-------------ikH  301 (356)
                      .+.++.++++++||.+|...   .|+|.||++..+.+++.......+..++...      ....             ..|
T Consensus        13 ~vvi~~~~~~~vLl~~r~~~---~~~W~~PgG~ve~gEs~~~aa~RE~~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (150)
T 2o1c_A           13 LVVIYAQDTKRVLMLQRRDD---PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRH   89 (150)
T ss_dssp             EEEEEETTTCEEEEEECSSS---TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCGGGGG
T ss_pred             EEEEEECCCCEEEEEEEECC---CCCEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEE
T ss_conf             99999808998999998089---995999850466998999999899999859720012156765201001101205656


Q ss_pred             EEE--EEEEEEEEEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             983--159999999998077-----6766781332278887479987899999844
Q gi|254780479|r  302 TFT--HFTLTLFVWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       302 ~fT--H~~L~i~v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      .+.  .+......+....+.     ..+..+++|++.+++.++.++-.++++|...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~i~~~  145 (150)
T 2o1c_A           90 RYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQF  145 (150)
T ss_dssp             GBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHH
T ss_pred             EECCCCCCEEEEEEEEECCCCCCCCCCHHCEEEEEEHHHHHHCCCCHHHHHHHHHH
T ss_conf             63475332189999997388887787300057990499997546998899999999


No 39 
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=97.59  E-value=0.00031  Score=48.82  Aligned_cols=113  Identities=13%  Similarity=0.128  Sum_probs=61.0

Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE--EEEEEEEE
Q ss_conf             0003413760577645720132047442111134672158886301010000------213735899831--59999999
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH--FTLTLFVW  313 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH--~~L~i~v~  313 (356)
                      +.+++..+|++||.||...+ ..|.|+||++..+.++.......++..++..      ...+.+.+.++.  ......+|
T Consensus        11 V~~vi~~~~kvLlv~r~~~~-~~~~w~~PgG~ie~gEs~~~aa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (153)
T 2b0v_A           11 VAAVIEQDDKYLLVEEIPRG-TAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTF   89 (153)
T ss_dssp             EEEECEETTEEEEEEECSSS-SCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEECCEEEEEEEECCC-CCCEEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEE
T ss_conf             99999969999999984699-99989998237669979899999999998786663535888998740689948999999


Q ss_pred             EEECC----C---CCCCCCCEEECHHHHHHCCC---CHHHHHHHHHC--CCCCC
Q ss_conf             99807----7---67667813322788874799---87899999844--82379
Q gi|254780479|r  314 KTIVP----Q---IVIIPDSTWHDAQNLANAAL---PTVMKKALSAG--GIKVP  355 (356)
Q Consensus       314 ~~~~~----~---~~~~~~~~Wv~~~el~~~~L---Ps~~kKIL~al--g~~~p  355 (356)
                      .+...    .   .....+..|++.+++.+...   +..+.+.|...  |.+.|
T Consensus        90 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~p~v~~~l~~~~~~~~~p  143 (153)
T 2b0v_A           90 SGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAGKRYP  143 (153)
T ss_dssp             EEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHHTTCCBC
T ss_pred             EEEECCCCCCCCCCCCEEEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             999857986758986568999831999753841358989999999998589988


No 40 
>3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB, nucleoside triphosphatase; 2.69A {Escherichia coli apec O1}
Probab=97.59  E-value=0.00057  Score=46.92  Aligned_cols=106  Identities=11%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCEEEEEEE-EEEEEEEE
Q ss_conf             200034137605776457201320474421111346721588863010100002------13735899831-59999999
Q gi|254780479|r  241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTITHTFTH-FTLTLFVW  313 (356)
Q Consensus       241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~ikH~fTH-~~L~i~v~  313 (356)
                      .+.+++.++|++||.||...+  +|+|+||++..+.+++.......+..++...      .++.+.....+ ......+|
T Consensus         7 ~v~~vi~~~gkvLlv~r~~~~--~~~W~lPgG~ve~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~f   84 (153)
T 3dku_A            7 TVACVVHAEGKFLVVEETING--KALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLF   84 (153)
T ss_dssp             EEEEEEEETTEEEEEEEESSS--CEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECTTCCEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEECCCC--CCCEECCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEEEE
T ss_conf             999999909999999977899--980999776851899999999899999855435443588999887799971799999


Q ss_pred             EEECCCC-------CCCCCCEEECHHHHHHCCC--CHHHHHHHH
Q ss_conf             9980776-------7667813322788874799--878999998
Q gi|254780479|r  314 KTIVPQI-------VIIPDSTWHDAQNLANAAL--PTVMKKALS  348 (356)
Q Consensus       314 ~~~~~~~-------~~~~~~~Wv~~~el~~~~L--Ps~~kKIL~  348 (356)
                      .+.....       ....+..|++.+++.+..-  +-.+.+++.
T Consensus        85 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~r~p~v~~~~~  128 (153)
T 3dku_A           85 AIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIR  128 (153)
T ss_dssp             EEECSSCCCBCCSSTTCCEEEEECHHHHHHCSCBSSTHHHHHHH
T ss_pred             EEEECCCCCCCCCCCCEEEEEEECHHHHHCCCCCCCHHHHHHHH
T ss_conf             99965788777898653889981499975382018989999999


No 41 
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative nudix hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=97.55  E-value=0.00018  Score=50.39  Aligned_cols=100  Identities=15%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCE---------------E
Q ss_conf             00034137605776457201320474421111346721588863010100002------13735---------------8
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTI---------------T  300 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~i---------------k  300 (356)
                      .++++ .+|++||.+|+..    |.|+||++..+.+++......++..++...      ....+               .
T Consensus         5 ~~iv~-~d~~vLL~~r~~~----g~W~~PgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T 1k2e_A            5 SGVLV-ENGKVLLVKHKRL----GVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE   79 (156)
T ss_dssp             EEECE-ETTEEEEEECTTT----CSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE
T ss_pred             EEEEE-ECCEEEEEEECCC----CEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCCCEEEEEE
T ss_conf             99999-9999999998799----959998022628989788777889999897016746888880444556664189999


Q ss_pred             EEE-----EEEEEEEEEEEEECCCCCCCCCCEEECHHHHHHCCCCHHHHHHHH
Q ss_conf             998-----315999999999807767667813322788874799878999998
Q gi|254780479|r  301 HTF-----THFTLTLFVWKTIVPQIVIIPDSTWHDAQNLANAALPTVMKKALS  348 (356)
Q Consensus       301 H~f-----TH~~L~i~v~~~~~~~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~  348 (356)
                      ..+     .|..+.. .+.+.. ......+.+|++.+++.++.+...+++++.
T Consensus        80 ~~~~~~~~~~~~~~~-~~~~~~-~~~E~~~~~W~~~~el~~~~~~~~~~~~~~  130 (156)
T 1k2e_A           80 EVVKYPEETHIHFDL-IYLVKR-VGGDLKNGEWIDVREIDRIETFPNVRKVVS  130 (156)
T ss_dssp             EEEECSSCEEEEEEE-EEEEEE-EEECCCSCEEEEGGGGGGSCBSTTHHHHHH
T ss_pred             EEEECCCCCEEEEEE-EEEECC-CCCCEEEEEEEEHHHHHHCCCCHHHHHHHH
T ss_conf             986037774389988-885035-899703349974999864889868999999


No 42 
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=97.52  E-value=0.00019  Score=50.31  Aligned_cols=102  Identities=12%  Similarity=-0.028  Sum_probs=61.5

Q ss_pred             EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEE--EEEEEEEEEEEEEEECCCC
Q ss_conf             00341376057764572013204744211113467215888630101000021373589--9831599999999980776
Q gi|254780479|r  243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITH--TFTHFTLTLFVWKTIVPQI  320 (356)
Q Consensus       243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH--~fTH~~L~i~v~~~~~~~~  320 (356)
                      .+++..++++||.+|.     .|.|+||++..+.+++.......+..++.......+.+  .+++......+|.+.....
T Consensus        20 ~~ii~~~~~vLLv~~~-----~G~W~lPGG~ve~gEt~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~v~~~~~~~~   94 (163)
T 3f13_A           20 TAIIEMPDGVLVTASR-----GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPFNAHKVYLCIAQGQ   94 (163)
T ss_dssp             EEECEETTEEEEEECC--------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSSEEEEEEEEEC-CC
T ss_pred             EEEEEECCEEEEEEEC-----CCEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCEEEEEEEEEECCC
T ss_conf             9999819999999951-----99898990035699898999989999986933027899999916860499999997784


Q ss_pred             ----CCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             ----766781332278887479987899999844
Q gi|254780479|r  321 ----VIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       321 ----~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                          ....+..|++.+++. ..++...+.++.++
T Consensus        95 ~~~~~E~~~~~W~~~~el~-~~~~~~~r~il~~~  127 (163)
T 3f13_A           95 PKPQNEIERIALVSSPDTD-MDLFVEGRAILRRY  127 (163)
T ss_dssp             CCCCTTCCEEEEESSTTCS-SCBCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEECHHHCC-CCCCHHHHHHHHHH
T ss_conf             1488443469997299988-87882159999999


No 43 
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, protein structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis V583} SCOP: d.113.1.1
Probab=97.47  E-value=0.0022  Score=42.78  Aligned_cols=110  Identities=12%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             CCEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHC------CCCCCCCEECCCEEEEEE-----
Q ss_conf             211232000341376057764572013204744211113467215888630------101000021373589983-----
Q gi|254780479|r  236 PMRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHS------APFTANWILCNTITHTFT-----  304 (356)
Q Consensus       236 ~~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~------~~~~~~~~~l~~ikH~fT-----  304 (356)
                      ..+.....|+++.+++++|..|...    |.|.||++..+.+++.......      .........++.+.+.+.     
T Consensus        16 ~~r~~~~~vi~~~~~~~lLl~~~~~----g~W~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2azw_A           16 QTRYAAYIIVSKPENNTMVLVQAPN----GAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQ   91 (148)
T ss_dssp             EECCEEEEECEEGGGTEEEEEECTT----SCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTT
T ss_pred             CCCCEEEEEEEECCCCEEEEEECCC----CCEECCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCC
T ss_conf             4687299999988999999999499----929995523259979899999999998696003205999998773146898


Q ss_pred             -EEEEEEEEEEEECC-----CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH
Q ss_conf             -15999999999807-----7676678133227888747998789999984
Q gi|254780479|r  305 -HFTLTLFVWKTIVP-----QIVIIPDSTWHDAQNLANAALPTVMKKALSA  349 (356)
Q Consensus       305 -H~~L~i~v~~~~~~-----~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a  349 (356)
                       ++.....+|.+...     ......+..|++.+++.++-.+..++-+++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~r~~v~~  142 (148)
T 2azw_A           92 TAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEK  142 (148)
T ss_dssp             EEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHH
T ss_pred             CEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHH
T ss_conf             458999999999631366688765518999779999877479679999999


No 44 
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=97.46  E-value=0.00094  Score=45.41  Aligned_cols=109  Identities=12%  Similarity=0.089  Sum_probs=61.9

Q ss_pred             EEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCE--EEEEEE-----
Q ss_conf             232000341376057764572013204744211113467215888630101000------0213735--899831-----
Q gi|254780479|r  239 TGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTI--THTFTH-----  305 (356)
Q Consensus       239 ~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~i--kH~fTH-----  305 (356)
                      ...-.| +..+|++||.||.. .-+.|+|+||++..+.+++.......+..++.      ...++.+  .+.|++     
T Consensus       204 ~~v~av-v~~~~~vLL~~R~~-~~~~g~W~lPGG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~  281 (341)
T 2qjo_A          204 ITTDAV-VVQAGHVLMVRRQA-KPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSL  281 (341)
T ss_dssp             EEEEEE-EEETTEEEEEECCS-SSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCT
T ss_pred             EEEEEE-EEECCEEEEEECCC-CCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCCC
T ss_conf             224499-99899999998569-9999949998104689949899998999998686354204888984015416888886


Q ss_pred             -EEEEEEEEEEECCCC--------CCCCCCEEECHHHHHHCC--CCHHHHHHHHH
Q ss_conf             -599999999980776--------766781332278887479--98789999984
Q gi|254780479|r  306 -FTLTLFVWKTIVPQI--------VIIPDSTWHDAQNLANAA--LPTVMKKALSA  349 (356)
Q Consensus       306 -~~L~i~v~~~~~~~~--------~~~~~~~Wv~~~el~~~~--LPs~~kKIL~a  349 (356)
                       .+....+|.+.+...        ....+.+|++.+++...+  +.-=+++||..
T Consensus       282 ~~~~v~~~~~~~~~~~~~~~~~~~dE~~~~~W~~~~el~~~~~~l~~DH~~il~~  336 (341)
T 2qjo_A          282 RGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQH  336 (341)
T ss_dssp             TSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTHHHHHHH
T ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHCCCCCCCCCHHHHHHH
T ss_conf             5249999999998379757778997156899976999212760336359999999


No 45 
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.20A {Listeria innocua}
Probab=97.43  E-value=0.0011  Score=44.88  Aligned_cols=98  Identities=15%  Similarity=0.035  Sum_probs=56.2

Q ss_pred             EEEEEECCCC------HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEEE------EEEEEEEEEEE
Q ss_conf             0577645720------1320474421111346721588863010100002137--35899831------59999999998
Q gi|254780479|r  251 RILLRKRTNT------RLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFTH------FTLTLFVWKTI  316 (356)
Q Consensus       251 kiLL~KRp~~------gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH------~~L~i~v~~~~  316 (356)
                      ++||.||...      .+.+|+|.||++..+.++........+..++......  .....+++      ......+|.+.
T Consensus        47 ~VLLikR~~~~~~~~~~~~~G~W~lPGG~ve~gEt~~eAa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (187)
T 3i9x_A           47 HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAI  126 (187)
T ss_dssp             EEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEEEEE
T ss_pred             EEEEEECCCCCCCCCCCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEE
T ss_conf             89999647864346878899979898403689979999999999998697642036776633543579952899999999


Q ss_pred             CC--------CCCCCCCCEEECHHHHHHCCCCHHHHHHHH
Q ss_conf             07--------767667813322788874799878999998
Q gi|254780479|r  317 VP--------QIVIIPDSTWHDAQNLANAALPTVMKKALS  348 (356)
Q Consensus       317 ~~--------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~  348 (356)
                      +.        ......+..|++++++.+++|.--+++||.
T Consensus       127 ~~~~~~~~~~~~~E~~~~~W~~l~el~~~~LafdH~~ii~  166 (187)
T 3i9x_A          127 VPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLK  166 (187)
T ss_dssp             CCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHH
T ss_pred             EECCCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCHHHHHH
T ss_conf             8067676568987123679998999746887778999999


No 46 
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=97.40  E-value=0.0006  Score=46.76  Aligned_cols=95  Identities=8%  Similarity=-0.032  Sum_probs=55.1

Q ss_pred             EEEEECCCEEEEEECCCC-HHHHCCCC-CCCCCCCCCCCHHHHHHCCCCCCCCEECC-------CEEEEEE-----EEEE
Q ss_conf             003413760577645720-13204744-21111346721588863010100002137-------3589983-----1599
Q gi|254780479|r  243 FIAITNDNRILLRKRTNT-RLLEGMDE-LPGSAWSSTKDGNIDTHSAPFTANWILCN-------TITHTFT-----HFTL  308 (356)
Q Consensus       243 ~vii~~~~kiLL~KRp~~-gll~GLwE-FP~~e~~~~~~~~~~~~~~~~~~~~~~l~-------~ikH~fT-----H~~L  308 (356)
                      .++++.+|++||+||... ..+.|+|. +|++..+.+++.......+...+......       .+.|..+     +...
T Consensus        37 v~l~n~~g~lLl~kRs~~k~~~pg~w~~~~gG~ve~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~~~~  116 (190)
T 1hzt_A           37 SWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENE  116 (190)
T ss_dssp             EEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEE
T ss_pred             EEEEECCCEEEEEEECCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCEEEE
T ss_conf             99997999799999289999999734224386665897799999999999729844324026676788640599844799


Q ss_pred             EEEEEEEECCCC-----CCCCCCEEECHHHHHHC
Q ss_conf             999999980776-----76678133227888747
Q gi|254780479|r  309 TLFVWKTIVPQI-----VIIPDSTWHDAQNLANA  337 (356)
Q Consensus       309 ~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~~  337 (356)
                      ...+|....+..     ....+++|++++++.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~Ev~e~~Wv~~~eL~~~  150 (190)
T 1hzt_A          117 VCPVFAARTTSALQINDDEVMDYQWCDLADVLHG  150 (190)
T ss_dssp             ECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             EEEEEEEEECCCCCCCHHHHHEEEEECHHHHHHH
T ss_conf             9999999827987799778415899549999999


No 47 
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural genomics, structural genomics consortium; HET: FLC; 1.70A {Homo sapiens}
Probab=97.33  E-value=0.0016  Score=43.88  Aligned_cols=111  Identities=16%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             CEEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC-----CEEEEEEE---EE-
Q ss_conf             1123200034137605776457201320474421111346721588863010100002137-----35899831---59-
Q gi|254780479|r  237 MRTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN-----TITHTFTH---FT-  307 (356)
Q Consensus       237 ~r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~-----~ikH~fTH---~~-  307 (356)
                      .+.....+|++.++++||.+|.. .-..|+|+||++..+.+++......++..++......     .+.+....   +. 
T Consensus        25 h~v~V~~vi~~~~~~~lLv~r~~-~~~~~~W~lPGG~ve~gEs~~eaa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~  103 (199)
T 3h95_A           25 HQVGVAGAVFDESTRKILVVQDR-NKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGK  103 (199)
T ss_dssp             -CCEEEEEEEETTTTEEEEEEES-SSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC--------
T ss_pred             CCCEEEEEEEECCCCEEEEEEEC-CCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCCCCCE
T ss_conf             84069999995799999999888-89999199983211189998999999999977724354359899986317887651


Q ss_pred             -EEEEEEEEECC--C----CCCCCCCEEECHHHHHHCCCCHHHHHHHH
Q ss_conf             -99999999807--7----67667813322788874799878999998
Q gi|254780479|r  308 -LTLFVWKTIVP--Q----IVIIPDSTWHDAQNLANAALPTVMKKALS  348 (356)
Q Consensus       308 -L~i~v~~~~~~--~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~  348 (356)
                       ....++.+...  .    .....+..|++++++.+.....++.+.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~p~~~~i~  151 (199)
T 3h95_A          104 SDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSRVA  151 (199)
T ss_dssp             -CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHHHH
T ss_pred             EEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHHH
T ss_conf             679999995277776678960568999986999756867885899999


No 48 
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=97.32  E-value=0.0022  Score=42.86  Aligned_cols=103  Identities=16%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC--------EECCCEEEEEEE--------
Q ss_conf             0003413760577645720132047442111134672158886301010000--------213735899831--------
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW--------ILCNTITHTFTH--------  305 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~--------~~l~~ikH~fTH--------  305 (356)
                      ..+|.+.+|++||.||... -+.|+|+||++..+.+++......++...+..        .....+.|.+..        
T Consensus        22 ~~vi~~~~~~vLL~~R~~~-~~~g~W~lPgG~ve~gEt~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (160)
T 1rya_A           22 DFIVENSRGEFLLGKRTNR-PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFT  100 (160)
T ss_dssp             EEEEECTTSCEEEEEECSS-SSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSC
T ss_pred             EEEEEECCCEEEEEEECCC-CCCCCEECCEEECCCCCCHHHHHHHHHHHHHCCCEEECCEEEEEEEEEECCCCCCCCCCC
T ss_conf             9999969990999994799-999979997740139999788888999998698333021057889988656766778764


Q ss_pred             EEEEEEEEEEECCC------CCCCCCCEEECHHHHHHCCC-CHHHHH
Q ss_conf             59999999998077------67667813322788874799-878999
Q gi|254780479|r  306 FTLTLFVWKTIVPQ------IVIIPDSTWHDAQNLANAAL-PTVMKK  345 (356)
Q Consensus       306 ~~L~i~v~~~~~~~------~~~~~~~~Wv~~~el~~~~L-Ps~~kK  345 (356)
                      .+.-..+|.+....      .....+.+|++.+++.+.+. +..+|.
T Consensus       101 ~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~r~  147 (160)
T 1rya_A          101 THYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRA  147 (160)
T ss_dssp             EEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHG
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHH
T ss_conf             59999999999668765589522568899889995428667689999


No 49 
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=97.31  E-value=0.0013  Score=44.40  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             EEEEEEECCCEEEEEECCCC---HHHHCCCCCCCCCCCCCCCHHHHHHCCCC------CCCCEECCCEEEEEEE-EEEEE
Q ss_conf             20003413760577645720---13204744211113467215888630101------0000213735899831-59999
Q gi|254780479|r  241 AVFIAITNDNRILLRKRTNT---RLLEGMDELPGSAWSSTKDGNIDTHSAPF------TANWILCNTITHTFTH-FTLTL  310 (356)
Q Consensus       241 ~~~vii~~~~kiLL~KRp~~---gll~GLwEFP~~e~~~~~~~~~~~~~~~~------~~~~~~l~~ikH~fTH-~~L~i  310 (356)
                      ...++++.+|++||.||...   ....|.|+||++..+.+++.......+..      ......++.+.+.+.. .....
T Consensus        16 a~~iv~~~~g~vLLv~r~~~~~~~~~~g~W~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~   95 (159)
T 1sjy_A           16 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILR   95 (159)
T ss_dssp             EEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSCEEEE
T ss_pred             EEEEEEECCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCEEEE
T ss_conf             99999968998999998057888888994999812157997999999999999849341565899999788699989999


Q ss_pred             EEEEEECC--CC------CCCCCCEEECHHHHHHC
Q ss_conf             99999807--76------76678133227888747
Q gi|254780479|r  311 FVWKTIVP--QI------VIIPDSTWHDAQNLANA  337 (356)
Q Consensus       311 ~v~~~~~~--~~------~~~~~~~Wv~~~el~~~  337 (356)
                      ++|.+...  ..      ....+.+|++.+++.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~e~~~l  130 (159)
T 1sjy_A           96 HVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQL  130 (159)
T ss_dssp             EEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             99999984785457799852688999869998641


No 50 
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str}
Probab=97.27  E-value=0.0004  Score=48.02  Aligned_cols=105  Identities=12%  Similarity=0.051  Sum_probs=57.6

Q ss_pred             EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECC-----CEEEEEEE---
Q ss_conf             3200034137605776457201320474421111346721588863010100002------137-----35899831---
Q gi|254780479|r  240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCN-----TITHTFTH---  305 (356)
Q Consensus       240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~-----~ikH~fTH---  305 (356)
                      ....++++.++.+|+.+|.     .|.|.||++..+.++.......++..++...      .++     ...+.+++   
T Consensus        23 ~v~~vv~~~~~~lLl~~~~-----~~~W~lPgG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   97 (153)
T 3eds_A           23 SVAAVIKNEQGEILFQYPG-----GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYSNGDE   97 (153)
T ss_dssp             EEEEEEBCTTCCEEEECC--------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECTTSCE
T ss_pred             EEEEEEEECCCEEEEEEEC-----CCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCEEEECCCCCE
T ss_conf             8999999899899999939-----99399980421699698999899999975914674069999813536563689976


Q ss_pred             EEEEEEEEEEECC------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH
Q ss_conf             5999999999807------7676678133227888747998789999984
Q gi|254780479|r  306 FTLTLFVWKTIVP------QIVIIPDSTWHDAQNLANAALPTVMKKALSA  349 (356)
Q Consensus       306 ~~L~i~v~~~~~~------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a  349 (356)
                      ......+|.+...      ......+.+|++.+++.++.+|-+.+.+|+-
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~~~~~fleg  147 (153)
T 3eds_A           98 VEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPPLALPYPDKIFLEG  147 (153)
T ss_dssp             EEEEEEEEEEEEEEECCC-------CEEEECGGGCCCBSSCCCGGGCC--
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCEEEEC
T ss_conf             89999999999668976689971799999879997358999998689957


No 51 
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.27A {Streptococcus suis}
Probab=97.27  E-value=0.00067  Score=46.43  Aligned_cols=97  Identities=11%  Similarity=0.057  Sum_probs=50.3

Q ss_pred             EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEE-----EEEEEEEEEEE
Q ss_conf             003413760577645720132047442111134672158886301010000------2137358-----99831599999
Q gi|254780479|r  243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTIT-----HTFTHFTLTLF  311 (356)
Q Consensus       243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ik-----H~fTH~~L~i~  311 (356)
                      .+|+ +++++||.+|.     .|.|.||++..+.++........+...+..      ..++.+.     +....+.+...
T Consensus        75 avI~-~d~kiLLv~r~-----~G~W~lPGG~ve~gEs~~eaa~REv~EEtGl~v~~~~~l~v~~~~~~~~~~~~~~~~~~  148 (206)
T 3o8s_A           75 AAIF-QEDKILLVQEN-----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKV  148 (206)
T ss_dssp             EEEE-ETTEEEEEECT-----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC-----CEEEE
T ss_pred             EEEE-ECCEEEEEEEC-----CCCEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCEEEEEE
T ss_conf             9999-89999999908-----99789988236699899999999999987884142069999830113689985289999


Q ss_pred             EEEEECC-----CCCCCCCCEEECHHHHHHCCCCHHHHH
Q ss_conf             9999807-----767667813322788874799878999
Q gi|254780479|r  312 VWKTIVP-----QIVIIPDSTWHDAQNLANAALPTVMKK  345 (356)
Q Consensus       312 v~~~~~~-----~~~~~~~~~Wv~~~el~~~~LPs~~kK  345 (356)
                      +|.+...     ......+..|++.++|..+.+......
T Consensus       149 ~~~~~~~~~~~~~~~E~~e~~Wf~~deLp~L~~~~~~~~  187 (206)
T 3o8s_A          149 FILCRLLGGEFQPNSETVASGFFSLDDLPPLYLGKNTAE  187 (206)
T ss_dssp             EEEEEEEEECCCCCSSCSEEEEECTTSCCCBCTTTCCHH
T ss_pred             EEEEEECCCCCCCCCHHHEEEEEEHHHCCCCCCCCCHHH
T ss_conf             999996589615982010379984998848765847699


No 52 
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=97.08  E-value=0.0024  Score=42.53  Aligned_cols=105  Identities=10%  Similarity=0.125  Sum_probs=58.2

Q ss_pred             EEEEECCCEEEEEECCCC-HHHHCCCCCC-CCCCCCCCCHHHHHHCCCCCCCCEECC--CEEE--EEE----EEEEEEEE
Q ss_conf             003413760577645720-1320474421-111346721588863010100002137--3589--983----15999999
Q gi|254780479|r  243 FIAITNDNRILLRKRTNT-RLLEGMDELP-GSAWSSTKDGNIDTHSAPFTANWILCN--TITH--TFT----HFTLTLFV  312 (356)
Q Consensus       243 ~vii~~~~kiLL~KRp~~-gll~GLwEFP-~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH--~fT----H~~L~i~v  312 (356)
                      .++.+.+|++||.||+.. ..+.|+|++| ++..+.++........+...+......  .+..  .++    .....+.+
T Consensus        39 ~~v~~~~g~~Ll~~Rs~~k~~~pg~w~~~~GG~ve~gEt~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (171)
T 1q27_A           39 AFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCV  118 (171)
T ss_dssp             EEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCSSEEEE
T ss_pred             EEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEEE
T ss_conf             99985999799998189998999863468998777897989999799889759741026789999964778752589999


Q ss_pred             EEEECCC-----CCCCCCCEEECHHHHHHC-----CCCHHHHHHH
Q ss_conf             9998077-----676678133227888747-----9987899999
Q gi|254780479|r  313 WKTIVPQ-----IVIIPDSTWHDAQNLANA-----ALPTVMKKAL  347 (356)
Q Consensus       313 ~~~~~~~-----~~~~~~~~Wv~~~el~~~-----~LPs~~kKIL  347 (356)
                      |.+....     .....+..|++.+++...     ..|.....++
T Consensus       119 ~~~~~~~~~~~~~~Ev~~~~W~~~eEl~~~~~~ge~~~~~l~~~l  163 (171)
T 1q27_A          119 YELRSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELV  163 (171)
T ss_dssp             EEEECCCCCCSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             EEEECCCCCCCCHHHEEEEEEEEHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             999438886599468048899229999989877998816899999


No 53 
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=97.06  E-value=0.0028  Score=42.07  Aligned_cols=108  Identities=11%  Similarity=0.044  Sum_probs=56.4

Q ss_pred             EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEE------CCCE------------
Q ss_conf             1232000341376057764572013204744211113467215888630101000021------3735------------
Q gi|254780479|r  238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWIL------CNTI------------  299 (356)
Q Consensus       238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~------l~~i------------  299 (356)
                      ....++|+-+.++++||.+++.    .|.|.||++..+.++.......++..++....      .+.+            
T Consensus        46 ~t~~a~i~~~~~~~vLLv~~~~----~~~W~lPGG~ve~gEs~~~aa~REl~EEtGi~~~~~~~~~~~~~~~~~~~~~~~  121 (197)
T 3fcm_A           46 LTSSAFAVNKERNKFLMIHHNI----YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIK  121 (197)
T ss_dssp             EEEEEEEECTTSCEEEEEEETT----TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEE
T ss_pred             EEEEEEEEECCCCEEEEEEECC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             8899999988999899998679----992779844378996999999999999979985223111210013302456444


Q ss_pred             --EEEEEEEEEEEEEEEEEC-C-----CCCCCCCCEEECHHHHHHCCCCH----HHHHHHHH
Q ss_conf             --899831599999999980-7-----76766781332278887479987----89999984
Q gi|254780479|r  300 --THTFTHFTLTLFVWKTIV-P-----QIVIIPDSTWHDAQNLANAALPT----VMKKALSA  349 (356)
Q Consensus       300 --kH~fTH~~L~i~v~~~~~-~-----~~~~~~~~~Wv~~~el~~~~LPs----~~kKIL~a  349 (356)
                        ...-.|+.+.+..+.... .     ......+++|++.+++.++....    ..+|+++.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~kli~k  183 (197)
T 3fcm_A          122 RGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINK  183 (197)
T ss_dssp             TTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             46556643566667887431145566898640479997799997564987899999999999


No 54 
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=96.90  E-value=0.0043  Score=40.78  Aligned_cols=91  Identities=13%  Similarity=0.089  Sum_probs=49.5

Q ss_pred             EEEE-CCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCE-EEEEEEEEEEEEEEEE
Q ss_conf             0341-37605776457201320474421111346721588863010100002------13735-8998315999999999
Q gi|254780479|r  244 IAIT-NDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTI-THTFTHFTLTLFVWKT  315 (356)
Q Consensus       244 vii~-~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~i-kH~fTH~~L~i~v~~~  315 (356)
                      ++++ .++++||.+|...    |.|+||++..+.+++.......+...+...      ....+ .+.+......+.++..
T Consensus        10 ii~~~~~~~vLLv~~~~~----~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (146)
T 2jvb_A           10 AIFNENLSKILLVQGTES----DSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISG   85 (146)
T ss_dssp             EEBCTTSSEEEEECCSSS----SCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEEEECC
T ss_pred             EEEECCCCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCEEEEEEEEE
T ss_conf             999899999999994399----9399981143699799999999999997953030261205772365551799999999


Q ss_pred             ECC-------CCCCCCCCEEECHHHHHHCC
Q ss_conf             807-------76766781332278887479
Q gi|254780479|r  316 IVP-------QIVIIPDSTWHDAQNLANAA  338 (356)
Q Consensus       316 ~~~-------~~~~~~~~~Wv~~~el~~~~  338 (356)
                      ...       ......+..|++.+++.+..
T Consensus        86 ~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  115 (146)
T 2jvb_A           86 VSEVFNFKPQVRNEIDKIEWFDFKKISKTM  115 (146)
T ss_dssp             CCSSSCCCCCCSSSCCCEEEEEHHHHHTGG
T ss_pred             ECCCCCCCCCCCCCEEEEEEEEHHHHHHHH
T ss_conf             625644644598516899998699976442


No 55 
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=96.86  E-value=0.011  Score=37.91  Aligned_cols=100  Identities=10%  Similarity=-0.011  Sum_probs=54.1

Q ss_pred             CCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE----EEEEEEEEEEEC
Q ss_conf             3760577645720132047442111134672158886301010000------213735899831----599999999980
Q gi|254780479|r  248 NDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH----FTLTLFVWKTIV  317 (356)
Q Consensus       248 ~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH----~~L~i~v~~~~~  317 (356)
                      .+.++||.+|...   .|.|.||++..+.+++.......+..++..      .......+.+.+    .......|.+..
T Consensus        16 ~~~~vLl~~r~~~---~g~W~~PgG~~e~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (138)
T 1ktg_A           16 GKIEFLLLQASYP---PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKL   92 (138)
T ss_dssp             TEEEEEEEEESST---TCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCC---CCCEECCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEEEEE
T ss_conf             9779999997389---9979997236827999999999998887286512567765543345306999369999999996


Q ss_pred             CCC------CCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             776------766781332278887479987899999844
Q gi|254780479|r  318 PQI------VIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       318 ~~~------~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                      ...      ....++.|++++++.+.....-++++|+..
T Consensus        93 ~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~  131 (138)
T 1ktg_A           93 NNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKF  131 (138)
T ss_dssp             CSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEEEEHHHHHHHCCCHHHHHHHHHH
T ss_conf             688875898002578997699987662997799999999


No 56 
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=96.81  E-value=0.0058  Score=39.83  Aligned_cols=107  Identities=14%  Similarity=0.078  Sum_probs=55.5

Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECC--CEEEEEEEE------E
Q ss_conf             00034137605776457201320474421111346721588863010100002------137--358998315------9
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCN--TITHTFTHF------T  307 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~--~ikH~fTH~------~  307 (356)
                      +..++..+|++||.+|... -..|+|.+|++..+.+++.......+..++...      ..+  ...+.|+|.      +
T Consensus       211 ~~~vv~~~~~VLLv~R~~~-p~~g~W~LPGG~ve~gEs~~~aa~REl~EETGi~~~~~~~~~~~~~~~~~~~~~r~~~g~  289 (352)
T 2qjt_B          211 VDALVIVNDHILMVQRKAH-PGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGR  289 (352)
T ss_dssp             EEEEEEETTEEEEEEESSS-SSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSE
T ss_pred             EEEEEEECCEEEEEEECCC-CCCCEEECCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCE
T ss_conf             6799998999999996689-999838998020079979899999999999778641104788886312125777888843


Q ss_pred             EEEEEEEEECC------CCC---CCCCCEEECHHHHHHCC---CCHHHHHHHHH
Q ss_conf             99999999807------767---66781332278887479---98789999984
Q gi|254780479|r  308 LTLFVWKTIVP------QIV---IIPDSTWHDAQNLANAA---LPTVMKKALSA  349 (356)
Q Consensus       308 L~i~v~~~~~~------~~~---~~~~~~Wv~~~el~~~~---LPs~~kKIL~a  349 (356)
                      ...+.+.+...      ...   ...+.+|++++++....   +.-=+.+||+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~dE~~~~~Wvpl~el~~~~~~~l~~Dh~~Il~~  343 (352)
T 2qjt_B          290 TISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITI  343 (352)
T ss_dssp             EEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHH
T ss_pred             EEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             999999999853677777279860327999779995533253014539999999


No 57 
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=96.64  E-value=0.0031  Score=41.79  Aligned_cols=109  Identities=17%  Similarity=0.124  Sum_probs=58.7

Q ss_pred             EEEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECC--------------
Q ss_conf             123200034137605776457201320474421111346721588863010100002------137--------------
Q gi|254780479|r  238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCN--------------  297 (356)
Q Consensus       238 r~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~--------------  297 (356)
                      |...+.+++.+++++||.+|+..    |.|.||++..+.+++.......+...+...      .+.              
T Consensus         5 rh~~~~v~i~~~~kvLL~~~~~~----g~W~~PGG~ie~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (159)
T 3f6a_A            5 RHFTVSVFIVCKDKVLLHLHKKA----KKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKL   80 (159)
T ss_dssp             SCEEEEEEEEETTEEEEEECSSS----CCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEE
T ss_pred             CEEEEEEEEEECCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEE
T ss_conf             23899999998999999998189----90899814158889999999999999869951344688888510014677403


Q ss_pred             --CEEEEE------EEEEEEEEEEEEECC------CCCCCCCCEEECHHHHHHCC-CCH----HHHHHHHHCC
Q ss_conf             --358998------315999999999807------76766781332278887479-987----8999998448
Q gi|254780479|r  298 --TITHTF------THFTLTLFVWKTIVP------QIVIIPDSTWHDAQNLANAA-LPT----VMKKALSAGG  351 (356)
Q Consensus       298 --~ikH~f------TH~~L~i~v~~~~~~------~~~~~~~~~Wv~~~el~~~~-LPs----~~kKIL~alg  351 (356)
                        ...|..      .|..+ ..+|.+...      ......+.+|++.+++.+.+ ++.    ..+++|+.+-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~al~~le  152 (159)
T 3f6a_A           81 LINPIHTILGDVSPNHSHI-DFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILVMATEALDLLE  152 (159)
T ss_dssp             ECCCSEEEEECSSSSSCEE-EEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHHHHHHCC
T ss_pred             EEEEEEEECCCCCCCEEEE-EEEEEEEECCCCCCCCCCCEEEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf             4553231104676546999-99999980588755898724788997599974074588769999999998853


No 58 
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=96.59  E-value=0.012  Score=37.53  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             EEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCC--CCCHHHHHHCCCCCCCCEECC--CEEEEEEE-----EEEEE-EE
Q ss_conf             0034137605776457201320474421111346--721588863010100002137--35899831-----59999-99
Q gi|254780479|r  243 FIAITNDNRILLRKRTNTRLLEGMDELPGSAWSS--TKDGNIDTHSAPFTANWILCN--TITHTFTH-----FTLTL-FV  312 (356)
Q Consensus       243 ~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~--~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH-----~~L~i-~v  312 (356)
                      +-+.+.+.+|||.||... -..|.|.||++..+.  +++...........+......  ..-++|++     ....+ .+
T Consensus        30 f~~~~~~lkVLLvkR~~~-P~~G~WaLPGG~ve~~~gEsl~eAA~Rel~EETGl~~~~leql~~f~~~~Rdp~~~~isv~  108 (240)
T 3gz5_A           30 FTYHDQQLKVLLVQRSNH-PFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWSVTVC  108 (240)
T ss_dssp             EEEETTEEEEEEEECCSS-SSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSSTTSCEEEEE
T ss_pred             EEEECCCCEEEEEECCCC-CCCCCEECCCEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEE
T ss_conf             998789868999974689-9999788994577788897999999999987507876402588897654358998305899


Q ss_pred             EEEECC------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHH
Q ss_conf             999807------7676678133227888747998789999984
Q gi|254780479|r  313 WKTIVP------QIVIIPDSTWHDAQNLANAALPTVMKKALSA  349 (356)
Q Consensus       313 ~~~~~~------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a  349 (356)
                      |.+.++      ......+..|+..+++....+.--++.||+.
T Consensus       109 y~~l~~~~~~~~~~~e~~~~~w~~~~d~~~~~lafdh~~II~~  151 (240)
T 3gz5_A          109 YTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQ  151 (240)
T ss_dssp             EEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCHHHHHHH
T ss_conf             9998457765667654353399848877678776369999999


No 59 
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=96.58  E-value=0.004  Score=41.01  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             EEEEECC-CEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------EC-CCEEEEEEEEEEEEEEEE
Q ss_conf             0034137-605776457201320474421111346721588863010100002------13-735899831599999999
Q gi|254780479|r  243 FIAITND-NRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LC-NTITHTFTHFTLTLFVWK  314 (356)
Q Consensus       243 ~vii~~~-~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l-~~ikH~fTH~~L~i~v~~  314 (356)
                      +++++.+ +++||.|+..+   .|-|+||+|..+.+++......++..++...      .. ..+.+.+......+.++.
T Consensus       106 aIiln~~~~kvLLVk~~~~---~~~W~fPgGkie~gEs~~~aAiREv~EETGidi~~~~~~~~~~~~~~~~~~~~~y~~~  182 (271)
T 2a6t_A          106 AIMLDMSMQQCVLVKGWKA---SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIP  182 (271)
T ss_dssp             EEEBCSSSSEEEEEEESST---TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEEEEEEEEC
T ss_pred             EEEEECCCCEEEEEEECCC---CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEE
T ss_conf             9999789998999996189---9908898111289989999999999999687220102022046640468568999999


Q ss_pred             EECC-C------CCCCCCCEEECHHHHHHC
Q ss_conf             9807-7------676678133227888747
Q gi|254780479|r  315 TIVP-Q------IVIIPDSTWHDAQNLANA  337 (356)
Q Consensus       315 ~~~~-~------~~~~~~~~Wv~~~el~~~  337 (356)
                      .... .      ..+.++..|++.++|.++
T Consensus       183 ~v~~~~~~~p~~~~EI~eikW~~iddLp~~  212 (271)
T 2a6t_A          183 GISLDTRFESRTRKEISKIEWHNLMDLPTF  212 (271)
T ss_dssp             CCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred             EECCCCCCCCCCCCCCEEEEEEEHHHHHHH
T ss_conf             955787767468403469999759994657


No 60 
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=96.54  E-value=0.0056  Score=39.93  Aligned_cols=102  Identities=9%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEE----EEEEEEEEEEEE-CC
Q ss_conf             4137605776457201320474421111346721588863010100002137--3589983----159999999998-07
Q gi|254780479|r  246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFT----HFTLTLFVWKTI-VP  318 (356)
Q Consensus       246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fT----H~~L~i~v~~~~-~~  318 (356)
                      .++++++||.+|...   .|.|+||++..+.+++.......+..++......  .+...|.    .....+.++.+. ..
T Consensus        50 ~~~~~~vLlv~~~~~---~~~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~  126 (194)
T 2fvv_A           50 SESEEEVLLVSSSRH---PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVL  126 (194)
T ss_dssp             STTCCEEEEEECSSC---TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEC
T ss_pred             ECCCCEEEEEEECCC---CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEC
T ss_conf             789988999994179---99098974005799799999999999986973403169999867899857999999998704


Q ss_pred             C-----CCCCCCCEEECHHHHHHC-CCCHH-HHHHHHHC
Q ss_conf             7-----676678133227888747-99878-99999844
Q gi|254780479|r  319 Q-----IVIIPDSTWHDAQNLANA-ALPTV-MKKALSAG  350 (356)
Q Consensus       319 ~-----~~~~~~~~Wv~~~el~~~-~LPs~-~kKIL~al  350 (356)
                      .     .....+.+|++.+|+.++ ....+ +..+++.+
T Consensus       127 ~~~~~~~~E~~~~~W~~~~Ea~~ll~~~~p~~~~~l~~L  165 (194)
T 2fvv_A          127 EDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQASYFETL  165 (194)
T ss_dssp             SSCHHHHHHCCCEEEEEHHHHHHHHTTTCHHHHHHTCC-
T ss_pred             CCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             788899873448899529999998756759999999999


No 61 
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=96.52  E-value=0.011  Score=37.93  Aligned_cols=96  Identities=11%  Similarity=0.075  Sum_probs=53.7

Q ss_pred             EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEE------EEEEEEEEEE
Q ss_conf             2000341376057764572013204744211113467215888630101000021373589983------1599999999
Q gi|254780479|r  241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFT------HFTLTLFVWK  314 (356)
Q Consensus       241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fT------H~~L~i~v~~  314 (356)
                      .+.++...+|++||.++-..++-.++||||.+..+.+++.......+..++.... ..+.|.++      ..+-.+++|.
T Consensus        36 av~vl~~~~~~ilLvkq~R~~~~~~~~elPaG~ve~gEs~~~aa~REl~EEtG~~-~~~~~l~~~~~~~g~~~~~~~~f~  114 (170)
T 1v8y_A           36 AVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS-GDLTYLFSYFVSPGFTDEKTHVFL  114 (170)
T ss_dssp             EEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEE-EEEEEEEEEESCTTTBCCEEEEEE
T ss_pred             EEEEEEEECCEEEEEEEEECCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCE-EEEEEEEEECCCCCCCCCEEEEEE
T ss_conf             9999999999999999166588994599975881899799999999987876988-799998776258984640899999


Q ss_pred             EEC----CC---CCCCCCCEEECHHHHHHC
Q ss_conf             980----77---676678133227888747
Q gi|254780479|r  315 TIV----PQ---IVIIPDSTWHDAQNLANA  337 (356)
Q Consensus       315 ~~~----~~---~~~~~~~~Wv~~~el~~~  337 (356)
                      +..    ..   .....+..|++.+++.++
T Consensus       115 a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~  144 (170)
T 1v8y_A          115 AENLKEVEAHPDEDEAIEVVWMRPEEALER  144 (170)
T ss_dssp             EEEEEECC--------CEEEEECHHHHHHH
T ss_pred             EEECCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             966731367999994589999999999999


No 62 
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA; 1.80A {Aquifex aeolicus VF5}
Probab=96.52  E-value=0.0078  Score=38.93  Aligned_cols=95  Identities=12%  Similarity=0.006  Sum_probs=51.2

Q ss_pred             EEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEEE------EEEEEEEEEEECCCC--
Q ss_conf             05776457201320474421111346721588863010100002137--35899831------599999999980776--
Q gi|254780479|r  251 RILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFTH------FTLTLFVWKTIVPQI--  320 (356)
Q Consensus       251 kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH------~~L~i~v~~~~~~~~--  320 (356)
                      .+||.||...   .+.|+||++..+.++.......++..++......  .+-++|++      ...-...|.+.....  
T Consensus        26 ~iLL~~r~~~---p~~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (139)
T 2yyh_A           26 GIVLIERKYP---PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQGEPK  102 (139)
T ss_dssp             EEEEEEECSS---SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSCTTSCEEEEEEEEEEESCCC
T ss_pred             EEEEEEECCC---CCCEECCEECEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCC
T ss_conf             9999996689---9969896113318989899999998774184278879999983567765169999999992589632


Q ss_pred             --CCCCCCEEECHHHHHHCCCCHHHHHHHH
Q ss_conf             --7667813322788874799878999998
Q gi|254780479|r  321 --VIIPDSTWHDAQNLANAALPTVMKKALS  348 (356)
Q Consensus       321 --~~~~~~~Wv~~~el~~~~LPs~~kKIL~  348 (356)
                        ....+.+|++.+++....|.-.++++|.
T Consensus       103 ~~~E~~~~~W~~~~elp~~~l~fdh~~ii~  132 (139)
T 2yyh_A          103 AGSDAKKVKVYRLEEIPLDKLVFDHKKIIL  132 (139)
T ss_dssp             CCTTEEEEEEECTTSCCGGGBCTTHHHHHH
T ss_pred             CCCCHHEEEEEEHHHCCCCCCCCCHHHHHH
T ss_conf             898111589998999877877838999999


No 63 
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A*
Probab=96.20  E-value=0.0036  Score=41.26  Aligned_cols=103  Identities=13%  Similarity=0.021  Sum_probs=54.7

Q ss_pred             EEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCC------CCCCEECCCEEEEE------EEEEEEEE
Q ss_conf             0341376057764572013204744211113467215888630101------00002137358998------31599999
Q gi|254780479|r  244 IAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPF------TANWILCNTITHTF------THFTLTLF  311 (356)
Q Consensus       244 vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~------~~~~~~l~~ikH~f------TH~~L~i~  311 (356)
                      .+.+.+.++||.||..+   .+.|.||++..+.+++......+...      .........+...+      ++......
T Consensus        23 ~~~~~~~~~LLi~~~~~---~~~W~~PgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   99 (153)
T 1xsa_A           23 KVDNNAIEFLLLQASDG---IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYW   99 (153)
T ss_dssp             CSSSCSEEEEEEEETTT---TCCEECSEEECCSSSCHHHHHHHHHHHHTCCCGGGEEECCSSCCEEECCTTTCCCEEEEE
T ss_pred             CEECCCCEEEEEEECCC---CCCEECCEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCEEEEEE
T ss_conf             25089868999996399---995899733134998999999999998755221035662231002210479961899999


Q ss_pred             EEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHHHHHHH
Q ss_conf             99998077-----676678133227888747998789999984
Q gi|254780479|r  312 VWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMKKALSA  349 (356)
Q Consensus       312 v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~a  349 (356)
                      ++......     .....++.|++.+++.+...+--++.+|..
T Consensus       100 ~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~il~~  142 (153)
T 1xsa_A          100 LAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQE  142 (153)
T ss_dssp             EEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCEEEEEEEHHHHHHHCCCHHHHHHHHH
T ss_conf             9999526675389864106899649999987299889999999


No 64 
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=96.12  E-value=0.053  Score=33.07  Aligned_cols=39  Identities=21%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             CCCEEEEEEEEEECCCEEEEEECCCC-HHHHCCCCCCCCCC
Q ss_conf             22112320003413760577645720-13204744211113
Q gi|254780479|r  235 RPMRTGAVFIAITNDNRILLRKRTNT-RLLEGMDELPGSAW  274 (356)
Q Consensus       235 k~~r~~~~~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~  274 (356)
                      ...+.+.++ +.+.+|++||+||+.. ..+.|+|..+.+..
T Consensus        57 l~HRa~~v~-v~n~~g~lLLQkRs~~K~~~Pg~Wd~s~gGH   96 (235)
T 2dho_A           57 LLHRAFSVF-LFNTENKLLLQQRSDAKITFPGCFTNTCCSH   96 (235)
T ss_dssp             CCEEEEEEE-EECTTCCEEEEEECTTCSSSTTCEESSEEEC
T ss_pred             CEEEEEEEE-EEECCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             648899999-9958984899976798878998501256764


No 65 
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6
Probab=95.97  E-value=0.024  Score=35.45  Aligned_cols=99  Identities=10%  Similarity=0.054  Sum_probs=57.6

Q ss_pred             EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--CEEEEEEE-------EEEEEEEEEEE
Q ss_conf             4137605776457201320474421111346721588863010100002137--35899831-------59999999998
Q gi|254780479|r  246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--TITHTFTH-------FTLTLFVWKTI  316 (356)
Q Consensus       246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~ikH~fTH-------~~L~i~v~~~~  316 (356)
                      .+.+.++||.||... -+.|.|.+|++..+.+++.......+..++......  ..-++|++       ..+.+ +|.+.
T Consensus        24 ~~~~l~VLLvkR~~~-P~~g~WaLPGG~ve~gEs~~~Aa~Rel~EEtGl~~~~leql~~~~~~~Rdp~~~~isv-~y~al  101 (226)
T 2fb1_A           24 NEGEISLLLLKRNFE-PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVVSI-AYYAL  101 (226)
T ss_dssp             ETTEEEEEEEECSSS-SSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSSSSCEEEE-EEEEE
T ss_pred             ECCCCEEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEE-EEEEE
T ss_conf             799658999984689-8999787980047799898899999999874666652389645258767787734789-99999


Q ss_pred             CCCCC------CCCCCEEECHHHHHHCCCCHHHHHHHH
Q ss_conf             07767------667813322788874799878999998
Q gi|254780479|r  317 VPQIV------IIPDSTWHDAQNLANAALPTVMKKALS  348 (356)
Q Consensus       317 ~~~~~------~~~~~~Wv~~~el~~~~LPs~~kKIL~  348 (356)
                      ++...      ...+..|++.+++.++++.  +..|++
T Consensus       102 v~~~~~~~~~~e~~~~~w~~~~~lp~LafD--H~~ii~  137 (226)
T 2fb1_A          102 ININEYDRELVQKHNAYWVNINELPALIFD--HPEMVD  137 (226)
T ss_dssp             CCTTSSCHHHHHHTTEEEEETTSCCCBSTT--HHHHHH
T ss_pred             ECCCCCCCCCCCCCCCEEECHHHHHHHHHH--HHHHHH
T ss_conf             648876666531001346445652000002--699999


No 66 
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=95.67  E-value=0.075  Score=32.03  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             EEEEEEEECCCEEEEEECCCC---HHHHCCCCCC-CCCCCCC------CC------HHHHHHCCCCCCCCEECCCEEEEE
Q ss_conf             320003413760577645720---1320474421-1113467------21------588863010100002137358998
Q gi|254780479|r  240 GAVFIAITNDNRILLRKRTNT---RLLEGMDELP-GSAWSST------KD------GNIDTHSAPFTANWILCNTITHTF  303 (356)
Q Consensus       240 ~~~~vii~~~~kiLL~KRp~~---gll~GLwEFP-~~e~~~~------~~------~~~~~~~~~~~~~~~~l~~ikH~f  303 (356)
                      ...+++++.+|++|+.+|..+   +.|.|+|++| ++-.+..      +.      .++.++..........++.+....
T Consensus        69 ~ipyvv~~~~~~~ll~~R~~~~ge~rl~~~~sigvGGHv~~gd~~~~~Es~~~Aa~REl~EEtGI~~~~~~~lG~i~~~~  148 (211)
T 3e57_A           69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSST  148 (211)
T ss_dssp             EEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCS
T ss_pred             CEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf             24799996599999999568886554578500466725567766789958999999999898594067727999992688


Q ss_pred             E---EEEEEEEEEEEECC----CCCCCCCCEEECHHHHHHCC
Q ss_conf             3---15999999999807----76766781332278887479
Q gi|254780479|r  304 T---HFTLTLFVWKTIVP----QIVIIPDSTWHDAQNLANAA  338 (356)
Q Consensus       304 T---H~~L~i~v~~~~~~----~~~~~~~~~Wv~~~el~~~~  338 (356)
                      +   ...+ ..+|.+...    +.....+..|+++++|.++.
T Consensus       149 ~~~~~vh~-~vvf~~~~~~~~~~e~E~~e~~Wv~~eEL~~~~  189 (211)
T 3e57_A          149 TEVSRVHL-GALFLGRGKFFSVKEKDLFEWELIKLEELEKFS  189 (211)
T ss_dssp             SHHHHTEE-EEEEEEEEEEEEESCTTTCEEEEEEHHHHHHHG
T ss_pred             CCCCEEEE-EEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHH
T ss_conf             99876999-999984168888895412278998799974547


No 67 
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=95.14  E-value=0.043  Score=33.72  Aligned_cols=90  Identities=8%  Similarity=0.082  Sum_probs=48.7

Q ss_pred             EEEECCCEEEEEE--CCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC------CCCEECCCEEEE--EEEEEEEEEEE
Q ss_conf             0341376057764--5720132047442111134672158886301010------000213735899--83159999999
Q gi|254780479|r  244 IAITNDNRILLRK--RTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT------ANWILCNTITHT--FTHFTLTLFVW  313 (356)
Q Consensus       244 vii~~~~kiLL~K--Rp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~------~~~~~l~~ikH~--fTH~~L~i~v~  313 (356)
                      +.++.+|+++|.+  |...+-|  .||||.+..+.+++.......+...      ..+..++.+...  ++...  +++|
T Consensus        11 lp~~~~~~vlLvrq~R~~~~~~--~~e~P~G~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~g~~~~~--~~~~   86 (145)
T 2w4e_A           11 LPVTAQGEAVLIRQFRYPLRAT--ITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVV--FYPL   86 (145)
T ss_dssp             EEEETTSEEEEEEEEETTTTEE--EEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCE--EEEE
T ss_pred             EEECCCCEEEEEEEEECCCCCC--EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEE--EEEE
T ss_conf             9986999899998077489994--58666446899849999999998874388677369999996456307649--9999


Q ss_pred             EEEC--CC-----CCCCCCCEEECHHHHHHC
Q ss_conf             9980--77-----676678133227888747
Q gi|254780479|r  314 KTIV--PQ-----IVIIPDSTWHDAQNLANA  337 (356)
Q Consensus       314 ~~~~--~~-----~~~~~~~~Wv~~~el~~~  337 (356)
                      .+..  ..     .....+..|++.+++.++
T Consensus        87 ~a~~~~~~~~~~~~~E~~~~~~~~~~e~~~~  117 (145)
T 2w4e_A           87 LALGVTLGAAQLEDTETIERVVLPLAEVYRM  117 (145)
T ss_dssp             EEEEEEEC--------CEEEEEEEHHHHHHH
T ss_pred             EEEECCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             9965305786899984699999889999999


No 68 
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II(PSI II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis ATCC15703}
Probab=95.13  E-value=0.059  Score=32.77  Aligned_cols=102  Identities=9%  Similarity=0.014  Sum_probs=54.1

Q ss_pred             EEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEEE------------
Q ss_conf             3413760577645720132047442111134672158886301010000------2137358998315------------
Q gi|254780479|r  245 AITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTHF------------  306 (356)
Q Consensus       245 ii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH~------------  306 (356)
                      ....+.++||.+|+..|    -|.||.+..+.++........+..++..      ..++.+.+.|++-            
T Consensus        33 ~~~~~~eVlLv~r~~~~----~W~lPkG~ie~GE~~~~aA~REv~EETGl~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~  108 (364)
T 3fjy_A           33 EQLDSIEVCIVHRPKYD----DWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTA  108 (364)
T ss_dssp             HHHTTEEEEEEEETTTT----EEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC------------------
T ss_pred             CCCCCEEEEEEECCCCC----CEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCCC
T ss_conf             26897089999248999----87798522699979999999999998698310024001498871677734663136777


Q ss_pred             -EEEEEEEEEECC------------------CCCCCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf             -999999999807------------------76766781332278887479987899999844
Q gi|254780479|r  307 -TLTLFVWKTIVP------------------QIVIIPDSTWHDAQNLANAALPTVMKKALSAG  350 (356)
Q Consensus       307 -~L~i~v~~~~~~------------------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL~al  350 (356)
                       .-.+..|.....                  ...+..+.+|++.++..+.-...-.+++|..+
T Consensus       109 ~~k~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~EA~~~lt~~~dr~vl~~~  171 (364)
T 3fjy_A          109 DTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVF  171 (364)
T ss_dssp             ---CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHHHHHHHHHH
T ss_pred             CCEEEEEEEEEEECCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHH
T ss_conf             745999999999536421000124578788887735579981399999873898899999998


No 69 
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=95.08  E-value=0.1  Score=31.09  Aligned_cols=117  Identities=9%  Similarity=0.127  Sum_probs=58.1

Q ss_pred             CCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECC--CEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf             0013431011001234432222221123200034137--60577645720132047442111134672158886301010
Q gi|254780479|r  213 KNCLTFSEGKSHLLGINTIKKKRPMRTGAVFIAITND--NRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFT  290 (356)
Q Consensus       213 ~~C~~~~~~~~~~~P~kk~KKkk~~r~~~~~vii~~~--~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~  290 (356)
                      +++..|+......||.+..     .--..++.+...+  -+|||.||... -+.|.|.+|++..+.+++...........
T Consensus        22 ~~~~~y~~~~~~~y~~P~v-----avd~vif~~~~~~~~LkVLLv~R~~~-P~~g~WaLPGG~ve~gEsl~~Aa~REl~E   95 (273)
T 2fml_A           22 EFLTWYHQQELPEYEKPSL-----TVDMVLLCYNKEADQLKVLLIQRKGH-PFRNSWALPGGFVNRNESTEDSVLRETKE   95 (273)
T ss_dssp             HHHHHHTTSCCCCCCCCEE-----EEEEEEEEEETTTTEEEEEEEEECSS-SSTTCEECCEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCCCCCCC-----EEEEEEEEEECCCCEEEEEEEECCCC-CCCCCEECCEECCCCCCCHHHHHHHHHHH
T ss_conf             9999656022468999962-----79899999957889048999974689-89998889841016998999999999999


Q ss_pred             CCCEEC--CCE--EEEEEE-------EEEEEEEEEEECCCC-----CCCCCCEEECHHHHHH
Q ss_conf             000213--735--899831-------599999999980776-----7667813322788874
Q gi|254780479|r  291 ANWILC--NTI--THTFTH-------FTLTLFVWKTIVPQI-----VIIPDSTWHDAQNLAN  336 (356)
Q Consensus       291 ~~~~~l--~~i--kH~fTH-------~~L~i~v~~~~~~~~-----~~~~~~~Wv~~~el~~  336 (356)
                      +....+  ..+  -++|+.       ..+. ..|.+.++..     ....+..|++.+++..
T Consensus        96 EtGl~l~~~~l~ql~~f~~~~rdp~~~~vs-v~y~a~~~~~~~~~~~e~~~~~Wf~ldelp~  156 (273)
T 2fml_A           96 ETGVVISQENIEQLHSFSRPDRDPRGWVVT-VSYLAFIGEEPLIAGDDAKEVHWFNLERHGQ  156 (273)
T ss_dssp             HHCCCCCGGGEEEEEEECCTTSSTTSSEEE-EEEEEECCCCCCCCCTTEEEEEEEEEEEETT
T ss_pred             HHCCCCCCCCEEEEEEECCCCCCCCCEEEE-EEEEEEECCCCCCCCCCEEEEEEEEHHHCCC
T ss_conf             856555564114578621578888841899-9999996898758997723679981898840


No 70 
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isoprene biosynthesis, lipid synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens}
Probab=95.04  E-value=0.2  Score=29.05  Aligned_cols=40  Identities=25%  Similarity=0.278  Sum_probs=29.8

Q ss_pred             CCCCEEEEEEEEEECCCEEEEEECCCC-HHHHCCCCCCCCCC
Q ss_conf             222112320003413760577645720-13204744211113
Q gi|254780479|r  234 KRPMRTGAVFIAITNDNRILLRKRTNT-RLLEGMDELPGSAW  274 (356)
Q Consensus       234 kk~~r~~~~~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~  274 (356)
                      -...|.+.++| .+.+|++||+||+.. ..+.|+|....+..
T Consensus        67 Gl~HRa~~v~v-~n~~g~lLLQrRs~~K~~~Pg~wd~s~~GH  107 (246)
T 2pny_A           67 GLLHRAFSVVL-FNTKNRILIQQRSDTKVTFPGYFTDSCSSH  107 (246)
T ss_dssp             TCCEEEEEEEE-ECTTCCEEEEEECTTCSSSTTCBCCSEEEC
T ss_pred             CCEEEEEEEEE-EECCCCEEEEECCCCCCCCCCCEECCCCCC
T ss_conf             96588999999-968997999964899878998563167776


No 71 
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrolase, structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus HB8} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=94.98  E-value=0.037  Score=34.18  Aligned_cols=90  Identities=12%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             EEEECCCEEEEEE--CCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCC------CCEECCCEEEE--EEEEEEEEEEE
Q ss_conf             0341376057764--57201320474421111346721588863010100------00213735899--83159999999
Q gi|254780479|r  244 IAITNDNRILLRK--RTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTA------NWILCNTITHT--FTHFTLTLFVW  313 (356)
Q Consensus       244 vii~~~~kiLL~K--Rp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~------~~~~l~~ikH~--fTH~~L~i~v~  313 (356)
                      +.++.+|+++|.|  |+..  =..+||||.+..+.+++.......+..++      .+..++.+...  +|..  .+++|
T Consensus        47 ~~~~~~~~vlLvrq~R~~~--~~~~~elP~G~ve~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~--~~~~f  122 (182)
T 2yvp_A           47 LPVTERGTALLVRQYRHPT--GKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAV--VFHPF  122 (182)
T ss_dssp             EEBCTTSEEEEEEEEEGGG--TEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCC--EEEEE
T ss_pred             EEECCCCEEEEEEEEECCC--CCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCE--EEEEE
T ss_conf             9984899899999775468--9878987744678997999999998626447836427992367017952425--99999


Q ss_pred             EEECC---CCC-----CCCCCEEECHHHHHHC
Q ss_conf             99807---767-----6678133227888747
Q gi|254780479|r  314 KTIVP---QIV-----IIPDSTWHDAQNLANA  337 (356)
Q Consensus       314 ~~~~~---~~~-----~~~~~~Wv~~~el~~~  337 (356)
                      .+...   ...     ...+..|++.+++..+
T Consensus       123 ~a~~~~~~~~~~~d~~E~~e~~~v~~~e~~~~  154 (182)
T 2yvp_A          123 LALKARVVTPPTLEEGELLESLELPLTEVYAL  154 (182)
T ss_dssp             EECSCEECSCCCCCTTCCEEEEEEEHHHHHHH
T ss_pred             EEEECCCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             99722206899999790689999809999999


No 72 
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine diphospho-ribose, RV1700; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=94.77  E-value=0.049  Score=33.32  Aligned_cols=94  Identities=10%  Similarity=0.013  Sum_probs=48.0

Q ss_pred             EEEECCCEEEEEECCCCHHHHCCCCCCCCCCC-CCCCHHHHHHCCCCCCCCEECCCEEEEE------EEEEEEEEEEEEE
Q ss_conf             03413760577645720132047442111134-6721588863010100002137358998------3159999999998
Q gi|254780479|r  244 IAITNDNRILLRKRTNTRLLEGMDELPGSAWS-STKDGNIDTHSAPFTANWILCNTITHTF------THFTLTLFVWKTI  316 (356)
Q Consensus       244 vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~-~~~~~~~~~~~~~~~~~~~~l~~ikH~f------TH~~L~i~v~~~~  316 (356)
                      +.++.+|+++|.+.-..+.-..+||||.+..+ .+++.......+..++.....+.+++..      +...-.+++|.+.
T Consensus        49 l~~~~~g~vlLvrq~R~~~~~~~~elPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~~~~~~~~~~fla~  128 (207)
T 1mk1_A           49 VAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLAT  128 (207)
T ss_dssp             EECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEE
T ss_pred             EEECCCCEEEEEEEEECCCCCEEEECCCEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEE
T ss_conf             99958999999992600379828845740026688899999999999873971562799989922796166079999998


Q ss_pred             C----CCCC--C---CCCCEEECHHHHHHC
Q ss_conf             0----7767--6---678133227888747
Q gi|254780479|r  317 V----PQIV--I---IPDSTWHDAQNLANA  337 (356)
Q Consensus       317 ~----~~~~--~---~~~~~Wv~~~el~~~  337 (356)
                      .    ....  .   .-+..|++.+|+..+
T Consensus       129 ~~~~~~~~~~~~eeE~iev~w~~~~E~~~~  158 (207)
T 1mk1_A          129 GLREVGRPEAHHEEADMTMGWYPIAEAARR  158 (207)
T ss_dssp             EEEECCC----------CEEEEEHHHHHHH
T ss_pred             ECCCCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             642257788899983289999989999999


No 73 
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A
Probab=94.67  E-value=0.035  Score=34.35  Aligned_cols=88  Identities=14%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             CCEEEEEECCCCHHHHCCCCCCCCCCCCCCCH-HH------HHHCCCCCCCCEECC---CEEEEEEEEEEEEEEEEEECC
Q ss_conf             76057764572013204744211113467215-88------863010100002137---358998315999999999807
Q gi|254780479|r  249 DNRILLRKRTNTRLLEGMDELPGSAWSSTKDG-NI------DTHSAPFTANWILCN---TITHTFTHFTLTLFVWKTIVP  318 (356)
Q Consensus       249 ~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~-~~------~~~~~~~~~~~~~l~---~ikH~fTH~~L~i~v~~~~~~  318 (356)
                      ++.+|+.+|     +.|.|.||++..+..+.. ..      .++..........+.   ...|..++.++..++|.+.+.
T Consensus        64 ~~~vl~~~r-----~~g~~~~PgG~~~~~e~~~~~~~~Re~~Ee~Gl~~~~~~~l~~~y~~~h~~~~~~vv~h~Y~~~vt  138 (217)
T 2xsq_A           64 RYAILMQMR-----FDGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLT  138 (217)
T ss_dssp             EEEEEEEEE-----TTSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECC
T ss_pred             CCEEEEEEE-----CCCEEECCCEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEEEEEEECC
T ss_conf             216899995-----699696897402799987999999999998587643137875357524548997299999999833


Q ss_pred             C----------------CCCCCCCEEECHHHHHH--CCCCH
Q ss_conf             7----------------67667813322788874--79987
Q gi|254780479|r  319 Q----------------IVIIPDSTWHDAQNLAN--AALPT  341 (356)
Q Consensus       319 ~----------------~~~~~~~~Wv~~~el~~--~~LPs  341 (356)
                      .                .....+..|+++..+.+  +++|.
T Consensus       139 ~~~l~~iE~~~~~a~d~~~E~l~l~~VPl~~L~d~~~~LPa  179 (217)
T 2xsq_A          139 LEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPT  179 (217)
T ss_dssp             HHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTTSSTBHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCH
T ss_conf             65654644035444668723103499864773005578727


No 74 
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=94.58  E-value=0.1  Score=31.03  Aligned_cols=94  Identities=5%  Similarity=-0.053  Sum_probs=51.5

Q ss_pred             EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCC------CEECCCEEEE--EEEEEEEEEEE
Q ss_conf             000341376057764572013204744211113467215888630101000------0213735899--83159999999
Q gi|254780479|r  242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTAN------WILCNTITHT--FTHFTLTLFVW  313 (356)
Q Consensus       242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~------~~~l~~ikH~--fTH~~L~i~v~  313 (356)
                      +.++...+++++|.+.---+.-..+||||.+..+.+++.......+..++.      +..++.+..+  |+...  +++|
T Consensus        52 v~vv~~~~~~ilLv~qyR~~~~~~~~elPaG~id~gEsp~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~--~~~~  129 (198)
T 1vhz_A           52 VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSK--MNIV  129 (198)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCE--EEEE
T ss_pred             EEEEEEECCEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCEECCCCCEEEEE--EEEE
T ss_conf             99999209999999823268884599788369999919899877999997599865589986021279700368--9999


Q ss_pred             EEEC--CC-----CCCCCCCEEECHHHHHHC
Q ss_conf             9980--77-----676678133227888747
Q gi|254780479|r  314 KTIV--PQ-----IVIIPDSTWHDAQNLANA  337 (356)
Q Consensus       314 ~~~~--~~-----~~~~~~~~Wv~~~el~~~  337 (356)
                      .+..  +.     .....+..|++.+++.++
T Consensus       130 ~a~~~~~~~~~~de~E~i~v~~~~~~e~~~l  160 (198)
T 1vhz_A          130 VAQDLYPESLEGDEPEPLPQVRWPLAHMMDL  160 (198)
T ss_dssp             EEEEEEECCCCCCCSSCCCEEEEEGGGGGGG
T ss_pred             EEEECCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             9977536777999694589999899999999


No 75 
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=94.38  E-value=0.032  Score=34.58  Aligned_cols=90  Identities=11%  Similarity=0.057  Sum_probs=48.6

Q ss_pred             EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCH-HHH------HHCCCCCCCCEECCCEEEEEEEE-----EEEEEEE
Q ss_conf             41376057764572013204744211113467215-888------63010100002137358998315-----9999999
Q gi|254780479|r  246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDG-NID------THSAPFTANWILCNTITHTFTHF-----TLTLFVW  313 (356)
Q Consensus       246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~-~~~------~~~~~~~~~~~~l~~ikH~fTH~-----~L~i~v~  313 (356)
                      +..+..+|+++|.     .|.|+||++..+.++.. ...      ++......... +....|.+||.     ++-.++|
T Consensus        52 ~~~~~~vl~~~r~-----~g~~~~pgG~~~~~e~~~~~~~~re~~ee~g~~~~~~~-l~~~~y~~s~~~~~~~~~v~hfy  125 (212)
T 1u20_A           52 VPIRRVLLMMMRF-----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE-VTEDDYRSSQVREHPQKCVTHFY  125 (212)
T ss_dssp             EECCEEEEEEEET-----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCC-CCGGGEEEEEEECTTSCEEEEEE
T ss_pred             EECCCEEEEEEEC-----CCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE-EEECCEEEECCCCCCCEEEEEEE
T ss_conf             6257678999945-----99286997213799863999888899998587532157-65412486378789976999999


Q ss_pred             EEECCC----------------CCCCCCCEEECHHHHHH--CCCCH
Q ss_conf             998077----------------67667813322788874--79987
Q gi|254780479|r  314 KTIVPQ----------------IVIIPDSTWHDAQNLAN--AALPT  341 (356)
Q Consensus       314 ~~~~~~----------------~~~~~~~~Wv~~~el~~--~~LPs  341 (356)
                      ...+..                ..+..+..|++..++.+  +++|.
T Consensus       126 ~~~lt~~el~~~E~~~~~a~~~~~Evl~~~wVPl~~L~~~~~~lP~  171 (212)
T 1u20_A          126 IKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPA  171 (212)
T ss_dssp             EEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHH
T ss_pred             EEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCHH
T ss_conf             7864788888876134446667633234214579996352367512


No 76 
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=92.37  E-value=0.13  Score=30.41  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=39.3

Q ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             7898729989999997404634588999877675430057868731456888887778776677
Q gi|254780479|r   71 IFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAI  134 (356)
Q Consensus        71 ~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai  134 (356)
                      +..+=.|+.+|+..+ .|+|+. +|+.+.+--.     -.|.| .+.++|..+||||+.|..-|
T Consensus        31 L~~iNtAs~~eL~~l-pgIg~~-~A~~Iv~~R~-----~~G~f-~sledL~~v~Gi~~k~~eki   86 (98)
T 2edu_A           31 LDLLNEGSARDLRSL-QRIGPK-KAQLIVGWRE-----LHGPF-SQVEDLERVEGITGKQMESF   86 (98)
T ss_dssp             HHHHHHSCHHHHHHS-TTCCHH-HHHHHHHHHH-----HHCCC-SSGGGGGGSTTCCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHC-CCCCHH-HHHHHHHHHH-----HCCCC-CCHHHHHCCCCCCHHHHHHH
T ss_conf             100437899999647-998999-9999999999-----85992-88999844899899999999


No 77 
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=89.05  E-value=0.1  Score=31.13  Aligned_cols=42  Identities=26%  Similarity=0.310  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HCCC-EEEECCCCHHHHHHHHHCC
Q ss_conf             56888887778776677664-3496-3131243146665765197
Q gi|254780479|r  118 EILKKLPGIGDYTASAIVAI-AFNH-FAVVVDTNIERIISRYFDI  160 (356)
Q Consensus       118 ~~l~~LpGiG~yta~ai~s~-a~~~-~~~~vD~Nv~RVl~R~~~~  160 (356)
                      +.|++..||||.||=+|+|. ..++ ..++..+|+.. |+++-||
T Consensus        88 ~~Li~VsGIGPK~AL~ILs~~~~~~l~~aI~~~D~~~-L~~vpGI  131 (212)
T 2ztd_A           88 LTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAA-LTRVPGI  131 (212)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHH-HHTSTTC
T ss_pred             HHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHH-HHHCCCC
T ss_conf             9998348977467878885499999999998089999-8517782


No 78 
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A
Probab=88.92  E-value=0.72  Score=25.08  Aligned_cols=87  Identities=8%  Similarity=-0.052  Sum_probs=45.8

Q ss_pred             CEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCC------CCCCCCEECCCEEE--EEEEEEEEEEEEEEECCCC-
Q ss_conf             60577645720132047442111134672158886301------01000021373589--9831599999999980776-
Q gi|254780479|r  250 NRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSA------PFTANWILCNTITH--TFTHFTLTLFVWKTIVPQI-  320 (356)
Q Consensus       250 ~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~------~~~~~~~~l~~ikH--~fTH~~L~i~v~~~~~~~~-  320 (356)
                      ++++|.+.---++-+.+||||.+..+.+++.......+      .....+..++.+-.  .++.-.+++.+........ 
T Consensus        77 ~~vlLvrQ~R~~~~~~~~ElPaG~ie~gE~~~~aA~REL~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~~a~~~~~~~~  156 (212)
T 2dsc_A           77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAE  156 (212)
T ss_dssp             CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGG
T ss_pred             CEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCHHC
T ss_conf             88999994545888807866774788998999999999999769882047896369616732687199999999740203


Q ss_pred             -----C-----CCCCCEEECHHHHHH
Q ss_conf             -----7-----667813322788874
Q gi|254780479|r  321 -----V-----IIPDSTWHDAQNLAN  336 (356)
Q Consensus       321 -----~-----~~~~~~Wv~~~el~~  336 (356)
                           .     ..-+..|++.+++.+
T Consensus       157 ~~~~~~~~de~E~iev~~vp~~e~~~  182 (212)
T 2dsc_A          157 NARPKPKPGDGEFVEVISLPKNDLLQ  182 (212)
T ss_dssp             GSSCCCCCCTTCCCEEEEEEGGGHHH
T ss_pred             CCCCCCCCCCCCEEEEEEEEHHHHHH
T ss_conf             47788789999469999987999999


No 79 
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=87.81  E-value=0.26  Score=28.18  Aligned_cols=30  Identities=17%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             HCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0057868---73145688888777877667766
Q gi|254780479|r  107 KKYEGNF---PHKVEILKKLPGIGDYTASAIVA  136 (356)
Q Consensus       107 ~~~~g~~---P~~~~~l~~LpGiG~yta~ai~s  136 (356)
                      .++++++   -.+.++|.+|||||+.+|.+|..
T Consensus        49 ~~~g~kidlN~A~~~eL~~lpGig~~~A~~Iv~   81 (134)
T 1s5l_U           49 TAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVK   81 (134)
T ss_dssp             TTSTTSEETTTSCGGGGGGSTTCTHHHHHHHHH
T ss_pred             HCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             034770416407899997710346999999998


No 80 
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural genomics, protein structure initiative; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=87.47  E-value=0.75  Score=24.97  Aligned_cols=110  Identities=14%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             EEEEEEEEECCCEEEEEECCC-CHHHHCCCCCC-CCCCCCCCCHHH------HHHCCCCC---CCCEECCCEEEEEE--E
Q ss_conf             232000341376057764572-01320474421-111346721588------86301010---00021373589983--1
Q gi|254780479|r  239 TGAVFIAITNDNRILLRKRTN-TRLLEGMDELP-GSAWSSTKDGNI------DTHSAPFT---ANWILCNTITHTFT--H  305 (356)
Q Consensus       239 ~~~~~vii~~~~kiLL~KRp~-~gll~GLwEFP-~~e~~~~~~~~~------~~~~~~~~---~~~~~l~~ikH~fT--H  305 (356)
                      ..+.++.-+.+++++|.||.. +..+.|+|..+ .+....++....      .++.....   ......+.+...+.  +
T Consensus       122 h~~~~~~~~~~~~lwl~rRS~~K~~~PG~~D~~~aG~~~~Ges~~eaa~RE~~EEaGl~~~~~~~l~~~g~v~y~~~~~~  201 (300)
T 3dup_A          122 HLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPA  201 (300)
T ss_dssp             EEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETT
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCC
T ss_conf             89999955997699987356866779985323424321889888999999999981998788875134522899951589


Q ss_pred             -E-EEEEEEEEEECCC-------CCCCCCCEEECHHHHHHC-----C-CCHHHHHHHH
Q ss_conf             -5-9999999998077-------676678133227888747-----9-9878999998
Q gi|254780479|r  306 -F-TLTLFVWKTIVPQ-------IVIIPDSTWHDAQNLANA-----A-LPTVMKKALS  348 (356)
Q Consensus       306 -~-~L~i~v~~~~~~~-------~~~~~~~~Wv~~~el~~~-----~-LPs~~kKIL~  348 (356)
                       + .-.+.+|...++.       ..+.+++.|++.+|+.+.     . -|...--+|+
T Consensus       202 ~~~~e~~~vy~l~l~~d~~p~~~d~EVe~f~~~~~~Ev~~~l~~~e~fkpn~~lvilD  259 (300)
T 3dup_A          202 GIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVID  259 (300)
T ss_dssp             EEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBCTTHHHHHHH
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCHHHEEEEEEECHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf             9776799999999679986269822677899955999999987879748200889989


No 81 
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=87.36  E-value=0.15  Score=29.92  Aligned_cols=42  Identities=21%  Similarity=0.222  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HCCC-EEEECCCCHHHHHHHHHCC
Q ss_conf             56888887778776677664-3496-3131243146665765197
Q gi|254780479|r  118 EILKKLPGIGDYTASAIVAI-AFNH-FAVVVDTNIERIISRYFDI  160 (356)
Q Consensus       118 ~~l~~LpGiG~yta~ai~s~-a~~~-~~~~vD~Nv~RVl~R~~~~  160 (356)
                      +.|++..||||.+|=+|+|- ..++ ..++.++++.. |+++-|+
T Consensus        73 ~~Li~VsGIGPK~AL~ILs~~~~~~l~~aI~~~D~~~-L~~vpGI  116 (203)
T 1cuk_A           73 KELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGA-LVKLPGI  116 (203)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHH-HHTSTTC
T ss_pred             HHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCHHH-HHCCCCC
T ss_conf             9985768857566888861279899999987189988-6069987


No 82 
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=86.62  E-value=0.078  Score=31.88  Aligned_cols=60  Identities=13%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HCC-CEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             456888887778776677664-349-631312431466657651975457356899987410257
Q gi|254780479|r  117 VEILKKLPGIGDYTASAIVAI-AFN-HFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKIT  179 (356)
Q Consensus       117 ~~~l~~LpGiG~yta~ai~s~-a~~-~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~~~~~  179 (356)
                      ++.|++..||||.+|=+|+|. .-+ ...++..+|+.. |+++-|+-.  +.+++.+-++.+++.
T Consensus        71 F~~Li~V~GIGpK~Al~ILs~~~~~~l~~aI~~~D~~~-L~~vpGIGk--KtAerIilELk~K~~  132 (191)
T 1ixr_A           71 FELLLSVSGVGPKVALALLSALPPRLLARALLEGDARL-LTSASGVGR--RLAERIALELKGKVP  132 (191)
T ss_dssp             HHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHH-HTTSTTCCH--HHHHHHHHHHTTTSC
T ss_pred             HHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHH-HHCCCCCCH--HHHHHHHHHHHHHCC
T ss_conf             99985768837788988872599999999998399999-501888468--899999999986434


No 83 
>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U*
Probab=86.30  E-value=0.16  Score=29.72  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=15.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3145688888777877667766
Q gi|254780479|r  115 HKVEILKKLPGIGDYTASAIVA  136 (356)
Q Consensus       115 ~~~~~l~~LpGiG~yta~ai~s  136 (356)
                      .+.++|.+|||||+.+|.+|..
T Consensus        30 As~~eL~~lpGig~~~A~~Iv~   51 (104)
T 3bz1_U           30 TNIAAFIQYRGLYPTLAKLIVK   51 (104)
T ss_dssp             SCGGGGGGSTTTTHHHHHHHHH
T ss_pred             CCHHHHHHCCCCCHHHHHHHHH
T ss_conf             8999996589979999999997


No 84 
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=86.01  E-value=0.18  Score=29.29  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31456888887778776677664
Q gi|254780479|r  115 HKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus       115 ~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      .+.++|.+|||||+.+|.+|...
T Consensus        37 As~~eL~~lpgIg~~~A~~Iv~~   59 (98)
T 2edu_A           37 GSARDLRSLQRIGPKKAQLIVGW   59 (98)
T ss_dssp             SCHHHHHHSTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHH
T ss_conf             89999964799899999999999


No 85 
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=85.04  E-value=0.15  Score=29.92  Aligned_cols=107  Identities=13%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             04676644673116120332658998774899789872998999999740463458899987767543005786873145
Q gi|254780479|r   39 PYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVE  118 (356)
Q Consensus        39 py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~  118 (356)
                      |+....+-.-.|+++.  ..++=+.+++.|-.+.++.+..         |-.  -|++--.++|..|. .+...+ .+.+
T Consensus        16 ~~~~~~~~~~c~r~~~--~~~~N~~i~~~l~~la~~~e~~---------gd~--fr~~AY~rAa~~i~-~l~~~i-~~~~   80 (381)
T 1jms_A           16 PAVKKISQYACQRRTT--LNNYNQLFTDALDILAENDELR---------ENE--GSCLAFMRASSVLK-SLPFPI-TSMK   80 (381)
T ss_dssp             ---CCCCSCGGGSCBC--SCCTTHHHHHHHHHHHHHHHHT---------TCH--HHHHHHHHHHHHHH-TCSSCC-CSGG
T ss_pred             CCCCCCCCCEEECCCC--CCCCCHHHHHHHHHHHHHHHHC---------CCC--HHHHHHHHHHHHHH-HCCCCC-CCHH
T ss_conf             8523677612408999--9897699999999999999973---------980--87999999999998-589777-9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEECC-------CCHHHHHHHHHCC
Q ss_conf             68888877787766776643496313124-------3146665765197
Q gi|254780479|r  119 ILKKLPGIGDYTASAIVAIAFNHFAVVVD-------TNIERIISRYFDI  160 (356)
Q Consensus       119 ~l~~LpGiG~yta~ai~s~a~~~~~~~vD-------~Nv~RVl~R~~~~  160 (356)
                      +|..|||||+.+|.-|--|.-.-...-++       ..+..-|.+++|+
T Consensus        81 ~l~~ipGIG~~i~~kI~Eil~tG~l~~le~l~~~~~~~~l~~l~~I~Gi  129 (381)
T 1jms_A           81 DTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGV  129 (381)
T ss_dssp             GGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTC
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf             9836999519999999999984985889998701533688998737787


No 86 
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=84.27  E-value=1.3  Score=23.33  Aligned_cols=45  Identities=24%  Similarity=0.353  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999877675430057868731456888887778776677664349
Q gi|254780479|r   94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFN  140 (356)
Q Consensus        94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~  140 (356)
                      |+|--.++|..| +.+...+ .+.++|..|||||+.+|..|.-|.-.
T Consensus        35 r~~AY~rAa~~l-~~l~~~i-~~~~~l~~ipGIGk~i~~kI~Eil~t   79 (335)
T 2bcq_A           35 RALGYAKAINAL-KSFHKPV-TSYQEACSIPGIGKRMAEKIIEILES   79 (335)
T ss_dssp             HHHHHHHHHHHH-HSCCSCC-CCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHH-HHCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             799999999999-8599766-89999717999758999999999973


No 87 
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=83.26  E-value=0.64  Score=25.44  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88999877675430057868731456888887778776677664
Q gi|254780479|r   94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus        94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      |++-..+|+..| ..|...+ .+.+++..|||||+.+|.-|--+
T Consensus        36 ~~~aY~kA~~sL-k~~p~~I-~s~~~l~~l~GIG~~i~~ki~e~   77 (87)
T 2kp7_A           36 TRFVFQKALRSL-QRYPLPL-RSGKEAKILQHFGDRLCRMLDEK   77 (87)
T ss_dssp             THHHHHHHHHHH-HHCCSCC-CSHHHHHTCTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHCCCCC-CCHHHHHHCCCCCHHHHHHHHHH
T ss_conf             799999999999-9789988-88999972799778999999999


No 88 
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=83.16  E-value=2.4  Score=21.36  Aligned_cols=94  Identities=3%  Similarity=-0.084  Sum_probs=46.8

Q ss_pred             EEEE-CCCEEEEEECCCCHHH-----HCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEEE------EEEEEE
Q ss_conf             0341-3760577645720132-----047442111134672158886301010000213735899831------599999
Q gi|254780479|r  244 IAIT-NDNRILLRKRTNTRLL-----EGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFTH------FTLTLF  311 (356)
Q Consensus       244 vii~-~~~kiLL~KRp~~gll-----~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fTH------~~L~i~  311 (356)
                      ++++ .+++++|.+.---++.     +-+||||.+..+.+++.......+...+..-..+.+.+..+-      -.-.++
T Consensus        63 l~~~~~~~~vvLvrQ~R~~~~~~~~~~~~lElPaG~ie~gEsp~~aA~REL~EEtG~~~~~~~~l~~~~~spg~~~e~~~  142 (209)
T 1g0s_A           63 LPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSS  142 (209)
T ss_dssp             EEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTBCCEEE
T ss_pred             EEEECCCCEEEEEEEEEECCCCCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCEE
T ss_conf             99976899899999997274027898607865755048988999999989998658976556884268607854487269


Q ss_pred             EEEEECC--CCC---------CCCCCEEECHHHHHHC
Q ss_conf             9999807--767---------6678133227888747
Q gi|254780479|r  312 VWKTIVP--QIV---------IIPDSTWHDAQNLANA  337 (356)
Q Consensus       312 v~~~~~~--~~~---------~~~~~~Wv~~~el~~~  337 (356)
                      +|.+.+.  ...         ..-+..|++.+++.++
T Consensus       143 ~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~  179 (209)
T 1g0s_A          143 IMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  179 (209)
T ss_dssp             EEEEECCGGGCC--------CCSCEEEEEEHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             9999980333547789999995069999879999999


No 89 
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} SCOP: a.60.2.7
Probab=81.51  E-value=0.27  Score=28.14  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=15.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31456888887778776677664
Q gi|254780479|r  115 HKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus       115 ~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      .+.++|.+|||||+..|.+|...
T Consensus        24 As~~eL~~lpGig~~~A~~Iv~~   46 (75)
T 2duy_A           24 ASLEELMALPGIGPVLARRIVEG   46 (75)
T ss_dssp             CCHHHHTTSTTCCHHHHHHHHHT
T ss_pred             CCHHHHHHCCCCCHHHHHHHHHC
T ss_conf             87999977789899999999985


No 90 
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=80.56  E-value=0.43  Score=26.70  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=17.1

Q ss_pred             CCCHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             873145----6888887778776677664
Q gi|254780479|r  113 FPHKVE----ILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus       113 ~P~~~~----~l~~LpGiG~yta~ai~s~  137 (356)
                      +|...+    .|.+|||||+.||--++-+
T Consensus         3 ~p~~ie~LI~~l~kLPGIG~KsA~RlA~~   31 (228)
T 1vdd_A            3 YPPSLVSLIRELSRLPGIGPKSAQRLAFH   31 (228)
T ss_dssp             CCHHHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             95999999999966899988999999999


No 91 
>3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U*
Probab=80.47  E-value=0.39  Score=26.98  Aligned_cols=56  Identities=18%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             CHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             97898729989999997404634588999877675430057868731456888887778776677664
Q gi|254780479|r   70 TIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus        70 ~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      .--+|=.|+.+|+.++ .|+| ...|+.+.       +  +|.| .+.++|+..+|||+.+...|-..
T Consensus        23 ~kidlN~As~~eL~~l-pGig-~~~A~~Iv-------~--~gpf-~s~~dL~~V~Gig~~~~e~ik~y   78 (104)
T 3bz1_U           23 EKIDLNNTNIAAFIQY-RGLY-PTLAKLIV-------K--NAPY-ESVEDVLNIPGLTERQKQILREN   78 (104)
T ss_dssp             TBEETTSSCGGGGGGS-TTTT-HHHHHHHH-------H--SCCC-SSGGGGGGCTTCCHHHHHHHHHH
T ss_pred             CCEECCCCCHHHHHHC-CCCC-HHHHHHHH-------H--CCCC-CCHHHHHCCCCCCHHHHHHHHHH
T ss_conf             8357840899999658-9979-99999999-------7--4997-98999963899899999999986


No 92 
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=80.03  E-value=1.8  Score=22.29  Aligned_cols=45  Identities=16%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88999877675430057868731456888887778776677664349
Q gi|254780479|r   94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFN  140 (356)
Q Consensus        94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~  140 (356)
                      |++--.++|..|. .+...+ .+.+++..|||||..+|..|.-|.-.
T Consensus        39 r~~aY~~Aa~~i~-~l~~~i-~~~~~~~~i~gIG~~i~~kI~e~l~t   83 (360)
T 2ihm_A           39 RLLSFSRAASVLK-SLPCPV-ASLSQLHGLPYFGEHSTRVIQELLEH   83 (360)
T ss_dssp             HHHHHHHHHHHHH-HCSSCC-CSGGGGTTCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCCC-CCHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             7999999999998-599778-99999836999878999999999953


No 93 
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=79.62  E-value=0.29  Score=27.85  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCH
Q ss_conf             7314568888877787766776643496313124314
Q gi|254780479|r  114 PHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNI  150 (356)
Q Consensus       114 P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv  150 (356)
                      -.+.++|.++||||+.+|.+|..+- .+|..-.+|++
T Consensus        47 ~As~eeL~~i~GiG~~~A~~I~~~f-~~pf~~~~~g~   82 (89)
T 1z00_A           47 AASREDLALCPGLGPQKARRLFDVL-HEPFLKVPGGL   82 (89)
T ss_dssp             HCCHHHHHTSTTCCHHHHHHHHHHH-HSCSSSCSSSS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHH-CCHHCCCCCCC
T ss_conf             9878777268996999999999998-08420488974


No 94 
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=78.37  E-value=0.43  Score=26.67  Aligned_cols=52  Identities=31%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99997404634588999877--675430057868731456888887778776677664
Q gi|254780479|r   82 ILSAWAGLGYYTRARNLKKC--ADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus        82 vl~~w~gLGyy~Rar~l~~~--a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      .|.-.+|.|-- -|-++...  ...+.+-   ..=.|.+.|.++||||+.||.-|..=
T Consensus        74 ~Li~VsGIGPK-~AL~ILs~~~~~~l~~a---I~~~D~~~L~~vpGIGkKtA~rIilE  127 (203)
T 1cuk_A           74 ELIKTNGVGPK-LALAILSGMSAQQFVNA---VEREEVGALVKLPGIGKKTAERLIVE  127 (203)
T ss_dssp             HHHHSSSCCHH-HHHHHHHHSCHHHHHHH---HHTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred             HHHCCCCCCHH-HHHHHHHCCCHHHHHHH---HHHCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf             98576885756-68888612798999999---87189988606998779999999999


No 95 
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=77.76  E-value=2.8  Score=20.95  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=26.7

Q ss_pred             HHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             58998774899789872998999999740463458899987
Q gi|254780479|r   60 YFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKK  100 (356)
Q Consensus        60 ~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~  100 (356)
                      -..+.+++|-+++.|++|+++|+... .| | -..|+.++.
T Consensus        16 ~~~~Ll~~fgSi~~l~~as~eeL~~v-~G-~-~~~A~~i~~   53 (63)
T 2a1j_A           16 NCRSLMHHVKNIAELAALSQDELTSI-LG-N-AANAKQLYD   53 (63)
T ss_dssp             HHHHHHHHCSSHHHHHTCCHHHHHHH-HS-C-HHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHCCHHHHHHC-CC-C-HHHHHHHHH
T ss_conf             99999998679999987999999878-69-8-999999999


No 96 
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=75.98  E-value=4  Score=19.82  Aligned_cols=30  Identities=13%  Similarity=0.137  Sum_probs=22.3

Q ss_pred             EEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             0577645720132047442111134672158886
Q gi|254780479|r  251 RILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDT  284 (356)
Q Consensus       251 kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~  284 (356)
                      ++|+.+|+..|    .|.||++..+.++......
T Consensus       140 evLlI~R~d~g----~WaLPGG~Vd~GEs~~~Aa  169 (292)
T 1q33_A          140 QFVAIKRKDCG----EWAIPGGMVDPGEKISATL  169 (292)
T ss_dssp             EEEEEECTTTC----SEECCCEECCTTCCHHHHH
T ss_pred             EEEEEEECCCC----CEECCCCCCCCCCCHHHHH
T ss_conf             89999966999----7869965478999989999


No 97 
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=75.87  E-value=0.51  Score=26.17  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=14.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             731456888887778776677664
Q gi|254780479|r  114 PHKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus       114 P~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      -.+.++|..+||||+-+|.+|..+
T Consensus        60 ~As~eeL~~i~GIG~~~A~~I~~~   83 (91)
T 2a1j_B           60 AASREDLALCPGLGPQKARRLFDV   83 (91)
T ss_dssp             SCCHHHHHTSSSCCSHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             989997557799699999999999


No 98 
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=75.76  E-value=0.35  Score=27.29  Aligned_cols=43  Identities=30%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889998776754300578687314568888877787766776643
Q gi|254780479|r   94 RARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIA  138 (356)
Q Consensus        94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a  138 (356)
                      |++--.++|..|. .+...+ .+.+++..|||||+.+|..|--|.
T Consensus        35 k~~AY~rAa~~i~-~l~~~i-~~~~~l~~i~GiG~~i~~kI~Eil   77 (335)
T 2fmp_A           35 KYNAYRKAASVIA-KYPHKI-KSGAEAKKLPGVGTKIAEKIDEFL   77 (335)
T ss_dssp             HHHHHHHHHHHHH-HCSSCC-CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCCC-CCHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             8999999999998-599566-788988369997489999999999


No 99 
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA binding, oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=75.45  E-value=0.61  Score=25.58  Aligned_cols=55  Identities=24%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             HHHHHCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9997404634588999877--6754300578687314568888877787766776643496
Q gi|254780479|r   83 LSAWAGLGYYTRARNLKKC--ADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH  141 (356)
Q Consensus        83 l~~w~gLGyy~Rar~l~~~--a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~  141 (356)
                      |.-.+|.|-- -|-.+...  ...+..-   ..=.|...|.++||||+.||.-|..=--++
T Consensus        90 Li~VsGIGPK-~AL~ILs~~~~~~l~~a---I~~~D~~~L~~vpGIGkKtAeRIilELkdK  146 (212)
T 2ztd_A           90 LLSVSGVGPR-LAMAALAVHDAPALRQV---LADGNVAALTRVPGIGKRGAERMVLELRDK  146 (212)
T ss_dssp             HHTSTTCCHH-HHHHHHHHSCHHHHHHH---HHTTCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred             HHHCCCCCHH-HHHHHHHCCCHHHHHHH---HHHCCHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             9834897746-78788854999999999---980899998517782488899999999754


No 100
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=74.88  E-value=0.53  Score=26.03  Aligned_cols=55  Identities=18%  Similarity=0.231  Sum_probs=33.8

Q ss_pred             HHHHHCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9997404634588999877--6754300578687314568888877787766776643496
Q gi|254780479|r   83 LSAWAGLGYYTRARNLKKC--ADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNH  141 (356)
Q Consensus        83 l~~w~gLGyy~Rar~l~~~--a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~  141 (356)
                      |.-.+|.|- .-|-++...  ...+..-   ..=.|...|.++||||+.||.-|..=--++
T Consensus        74 Li~V~GIGp-K~Al~ILs~~~~~~l~~a---I~~~D~~~L~~vpGIGkKtAerIilELk~K  130 (191)
T 1ixr_A           74 LLSVSGVGP-KVALALLSALPPRLLARA---LLEGDARLLTSASGVGRRLAERIALELKGK  130 (191)
T ss_dssp             HHSSSCCCH-HHHHHHHHHSCHHHHHHH---HHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred             HHCCCCCCH-HHHHHHHHCCCHHHHHHH---HHCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             857688377-889888725999999999---983999995018884688999999999864


No 101
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=74.53  E-value=4.3  Score=19.64  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHCCHHHCCH-HHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             46766446731161203326-589987748997898729989999997404634588999877
Q gi|254780479|r   40 YKVWISEIMLQQTTVKTVEP-YFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKC  101 (356)
Q Consensus        40 y~v~vseimlqqT~v~~v~~-~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~  101 (356)
                      |..-+-++++   .+.-|-+ -+.+.+++|.+++.|++|+++|+... .| | -..|+.|+..
T Consensus        12 ~n~~~~~~L~---~iPGIg~k~~~~Ll~~f~sl~~i~~AS~eeL~~v-~G-~-~~~Ak~i~~~   68 (84)
T 1z00_B           12 YNPGPQDFLL---KMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI-LG-N-AANAKQLYDF   68 (84)
T ss_dssp             SCHHHHHHHH---TCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH-HS-C-HHHHHHHHHH
T ss_pred             HCCHHHHHHH---CCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHC-CC-C-HHHHHHHHHH
T ss_conf             3211999998---3899999999999999669999985999999887-59-7-9999999999


No 102
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=73.85  E-value=0.42  Score=26.73  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=16.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             314568888877787766776643
Q gi|254780479|r  115 HKVEILKKLPGIGDYTASAIVAIA  138 (356)
Q Consensus       115 ~~~~~l~~LpGiG~yta~ai~s~a  138 (356)
                      .+.++|..+||||+-+|..|..+-
T Consensus        43 As~eeL~~v~GIG~~~a~~i~~~~   66 (75)
T 1x2i_A           43 ASVAELMKVEGIGEKIAKEIRRVI   66 (75)
T ss_dssp             CCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             789999855897999999999998


No 103
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=71.26  E-value=0.91  Score=24.38  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=16.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6873145688888777877667766
Q gi|254780479|r  112 NFPHKVEILKKLPGIGDYTASAIVA  136 (356)
Q Consensus       112 ~~P~~~~~l~~LpGiG~yta~ai~s  136 (356)
                      ..|....+|+++||||+.||..+-.
T Consensus        91 ~~~~~~~~l~~I~GvGpk~A~~l~~  115 (578)
T 2w9m_A           91 QLPPGLLDLLGVRGLGPKKIRSLWL  115 (578)
T ss_dssp             HSCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             4617799984789868999999998


No 104
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=60.56  E-value=1.6  Score=22.64  Aligned_cols=21  Identities=38%  Similarity=0.457  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             145688888777877667766
Q gi|254780479|r  116 KVEILKKLPGIGDYTASAIVA  136 (356)
Q Consensus       116 ~~~~l~~LpGiG~yta~ai~s  136 (356)
                      +.++|.++||||+-+|..|..
T Consensus        54 s~eeL~~v~GIg~~~A~~I~~   74 (78)
T 1kft_A           54 SVEEIAKVPGISQGLAEKIFW   74 (78)
T ss_dssp             CHHHHTTSSSTTSHHHHHHHH
T ss_pred             CHHHHHCCCCCCHHHHHHHHH
T ss_conf             799998079989999999999


No 105
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=60.53  E-value=3.5  Score=20.29  Aligned_cols=46  Identities=15%  Similarity=0.219  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCC
Q ss_conf             731456888887778776677664349631312431466657651975
Q gi|254780479|r  114 PHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDII  161 (356)
Q Consensus       114 P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~  161 (356)
                      |...+.|.. +|||+-|+.-+-.-+|+--.-+....... |+.+-|+.
T Consensus        22 ~~~I~~L~~-~Gvg~~~i~KL~~aG~~Tv~~Ia~~t~~e-L~~i~Gi~   67 (114)
T 1b22_A           22 PQPISRLEQ-CGINANDVKKLEEAGFHTVEAVAYAPKKE-LINIKGIS   67 (114)
T ss_dssp             CCCHHHHHH-TTCSHHHHHHHHTTCCSSGGGBTSSBHHH-HHTTTTCS
T ss_pred             CCCHHHHHH-CCCCHHHHHHHHHCCCCHHHHHHHCCHHH-HHHCCCCC
T ss_conf             822899976-89999999999996974499998489999-97666988


No 106
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=60.22  E-value=8.3  Score=17.62  Aligned_cols=45  Identities=16%  Similarity=0.222  Sum_probs=36.1

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4046345889998776754300578687314568888877787766776
Q gi|254780479|r   87 AGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIV  135 (356)
Q Consensus        87 ~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~  135 (356)
                      ...|+++-+.++...+|.|...   .+|. ...|+.||++|+..+..+.
T Consensus       134 ~~~~~~~~~~~~l~l~q~i~q~---~w~~-~~pL~Qlp~i~~~~~~~l~  178 (339)
T 2q0z_X          134 SSNGWLSPALAAMELAQMVTQA---MWSK-DSYLKQLPHFTSEHIKRCT  178 (339)
T ss_dssp             HHTTBHHHHHHHHHHHHHHHHT---CCTT-SCGGGGSTTCCHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHH---CCCC-CCHHHCCCCCCHHHHHHHH
T ss_conf             8659899999999999998866---3899-7732324658999999998


No 107
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=57.75  E-value=1.7  Score=22.39  Aligned_cols=47  Identities=26%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             740463458899987767543005786873145688888777877667766
Q gi|254780479|r   86 WAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVA  136 (356)
Q Consensus        86 w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s  136 (356)
                      -.|+|- ..|+.|..+-  + ......+=.+.++|.++||||+.+|.-|..
T Consensus        20 i~gvG~-~~~~~l~~~g--~-~~~~~i~~~~~~~L~~~~g~g~k~a~~i~~   66 (241)
T 1vq8_Y           20 ISGVGP-SKAESLREAG--F-ESVEDVRGADQSALADVSGIGNALAARIKA   66 (241)
T ss_dssp             ---------------------------------------------------
T ss_pred             CCCCCH-HHHHHHHHCC--C-CCHHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             899899-9999999768--9-999999869999997468957999999999


No 108
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=57.54  E-value=1.9  Score=22.16  Aligned_cols=95  Identities=17%  Similarity=0.177  Sum_probs=44.1

Q ss_pred             HCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             48997898729989999997404634588999877675430057868731--4568888877787766776643496313
Q gi|254780479|r   67 KWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHK--VEILKKLPGIGDYTASAIVAIAFNHFAV  144 (356)
Q Consensus        67 ~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~--~~~l~~LpGiG~yta~ai~s~a~~~~~~  144 (356)
                      +|-++.+-|.+.+..++..-           ..+-.+.-++=||-.-|-+  .-.|.-|||||..|+-.|+----..|--
T Consensus        90 ~y~dLt~~Ak~eL~~vv~~i-----------V~~nE~~FV~FfN~A~pItlrlH~leLLPGIGKK~~~~IleeR~k~~Fe  158 (205)
T 2i5h_A           90 RYEDLTPAAKTELPYVIEHI-----------IKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFE  158 (205)
T ss_dssp             CGGGSCHHHHHHHHHHHHHH-----------HHTTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCC
T ss_pred             CHHHCCHHHHHHHHHHHHHH-----------HHHCCHHCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             28760789999899999999-----------9959020101324688861878888752350589999999996558988


Q ss_pred             ECCCCHHHHHHHHHCCCCCCCH-HHHHHHHHHH
Q ss_conf             1243146665765197545735-6899987410
Q gi|254780479|r  145 VVDTNIERIISRYFDIIKPAPL-YHKTIKNYAR  176 (356)
Q Consensus       145 ~vD~Nv~RVl~R~~~~~~~~~~-~~k~l~~~~~  176 (356)
                      -    ..-+-.|+-|+..+... .+..+.++.+
T Consensus       159 S----Fedi~~Rv~gi~dp~~lia~Ri~~El~~  187 (205)
T 2i5h_A          159 S----FEDIAQRVKGIQRPEKLIVSRIIYEIKN  187 (205)
T ss_dssp             S----HHHHHHHSTTCCCHHHHHHHHHHHHHHC
T ss_pred             C----HHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             9----9999988446789999999999999649


No 109
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=57.52  E-value=9.2  Score=17.31  Aligned_cols=19  Identities=16%  Similarity=0.230  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHCC-CC-CCCCC
Q ss_conf             999999999628-99-88754
Q gi|254780479|r    9 QSKILDWYDTNH-RV-LPWRT   27 (356)
Q Consensus         9 ~~~ll~w~~~~~-R~-lpwr~   27 (356)
                      .+.+++.+++.| .. .||+.
T Consensus        16 p~~l~~~l~~~g~~~l~p~Q~   36 (715)
T 2va8_A           16 PSNVIEIIKKRGIKKLNPPQT   36 (715)
T ss_dssp             CHHHHHHHHTTSCCBCCHHHH
T ss_pred             CHHHHHHHHHCCCCCCCHHHH
T ss_conf             999999999769999999999


No 110
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=53.93  E-value=5.8  Score=18.74  Aligned_cols=40  Identities=20%  Similarity=0.394  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHC---CCEEEECCCCHHH-HHHHHHCCCCC
Q ss_conf             8777877667766434---9631312431466-65765197545
Q gi|254780479|r  124 PGIGDYTASAIVAIAF---NHFAVVVDTNIER-IISRYFDIIKP  163 (356)
Q Consensus       124 pGiG~yta~ai~s~a~---~~~~~~vD~Nv~R-Vl~R~~~~~~~  163 (356)
                      .|||..|-++-++.++   |+++.+||.++.. -+..++++...
T Consensus        28 GGvGKTT~a~NLA~aLA~~GkkVllvD~D~~~~~~~~~~g~~~~   71 (262)
T 2ph1_A           28 GGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNA   71 (262)
T ss_dssp             SCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             98879999999999999779925764787788854210355533


No 111
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=53.13  E-value=6.2  Score=18.49  Aligned_cols=42  Identities=17%  Similarity=0.329  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHC---CCEEEECCCCHHH-HHHHHHCCCCC
Q ss_conf             888777877667766434---9631312431466-65765197545
Q gi|254780479|r  122 KLPGIGDYTASAIVAIAF---NHFAVVVDTNIER-IISRYFDIIKP  163 (356)
Q Consensus       122 ~LpGiG~yta~ai~s~a~---~~~~~~vD~Nv~R-Vl~R~~~~~~~  163 (356)
                      ..||+|..|-++=++.++   |+++.+||++..+ -++++|+++..
T Consensus       112 ~~~G~GKTtva~nLA~~lA~~GkrVLLID~D~r~~~l~~~~~~~~~  157 (299)
T 3cio_A          112 ATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE  157 (299)
T ss_dssp             SSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCCCCC
T ss_conf             9999988999999999999779968999169899870222034678


No 112
>1viu_A ADP-ribose pyrophosphatase; structural genomics, hydrolase; 2.40A {Escherichia coli} SCOP: d.113.1.1
Probab=52.79  E-value=11  Score=16.80  Aligned_cols=89  Identities=7%  Similarity=-0.032  Sum_probs=43.3

Q ss_pred             CCCEEEEEE--CCCCHH----HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEEEE------EEEEEEEEEE
Q ss_conf             376057764--572013----2047442111134672158886301010000213735899831------5999999999
Q gi|254780479|r  248 NDNRILLRK--RTNTRL----LEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTFTH------FTLTLFVWKT  315 (356)
Q Consensus       248 ~~~kiLL~K--Rp~~gl----l~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~fTH------~~L~i~v~~~  315 (356)
                      .+++++|.+  |+.-.+    =.-+||||.+..+.++.. .....+..++..-..+.+.+..+-      -+-.+++|.+
T Consensus        58 ~~~~vlLvrQfR~~~~~~~~~~~~~~ElPaG~id~eep~-~aA~REL~EETG~~~~~l~~l~~~~~spG~s~~~~~~f~a  136 (203)
T 1viu_A           58 KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPE-VCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIA  136 (203)
T ss_dssp             TTTEEEEEEEECHHHHTTTCSSCEEEECEEEECTTSCHH-HHHHHHHHHHHSCCCCCCEEEEEEESCTTTBCCEEEEEEE
T ss_pred             CCCEEEEEEEECCCEECCCCCCCEEEEEEEEECCCCCHH-HHHHHHHHHHHCCCCCEEEECCEECCCCCCCCCEEEEEEE
T ss_conf             899999999731652226887777999413605899979-9999998776478542489923274688423742589999


Q ss_pred             ECCCCC--C--------CCCCEEECHHHHHHC
Q ss_conf             807767--6--------678133227888747
Q gi|254780479|r  316 IVPQIV--I--------IPDSTWHDAQNLANA  337 (356)
Q Consensus       316 ~~~~~~--~--------~~~~~Wv~~~el~~~  337 (356)
                      .+....  .        .-+..|++.+++.++
T Consensus       137 ~~~~~~~~~~~~~de~E~Iev~~~~~~e~~~~  168 (203)
T 1viu_A          137 EYSDNQRANAGGGVEDEDIEVLELPFSQALEM  168 (203)
T ss_dssp             ECCTTCC---------CCEEEEEEEHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCCEEEEEEEHHHHHHH
T ss_conf             98750044578999997279999989999999


No 113
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A*
Probab=48.34  E-value=2.6  Score=21.11  Aligned_cols=43  Identities=14%  Similarity=0.213  Sum_probs=26.3

Q ss_pred             HHHHHH-CCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             998774-899789872998999999740463458899987767543
Q gi|254780479|r   62 KKFMQK-WPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIV  106 (356)
Q Consensus        62 ~~~~~~-~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~  106 (356)
                      ++..+. |-|+++|+.++.+|+.+. .|+.| ..|..+...++.++
T Consensus        17 ~kL~~ag~~t~~~l~~~~~~~l~~~-~~~~~-~~~~~i~~~~~~~~   60 (322)
T 2i1q_A           17 EKLVEAGYIDFMKIATATVGELTDI-EGISE-KAAAKMIMGARDLC   60 (322)
T ss_dssp             HHHHHHTCCSHHHHHTCCHHHHHTS-TTCCH-HHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCHHHHHCCCHHHHHHH-HCCCH-HHHHHHHHHHHHHH
T ss_conf             9999869960999973999999987-49999-99999999999873


No 114
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=47.15  E-value=12  Score=16.38  Aligned_cols=50  Identities=28%  Similarity=0.417  Sum_probs=29.3

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999997404634588999877675430057868731456888887778776677664
Q gi|254780479|r   81 EILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus        81 ~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      .+|...+||| -+.|.+|.+.-+    . +|.| .+.++|++.+|+|+.+---.++|
T Consensus       508 ~lL~~VsGLg-prkA~~iv~~r~----~-~g~f-~~R~~L~~v~~lG~k~F~q~AgF  557 (785)
T 3bzc_A          508 ALLARISGLN-STLAQNIVAHRD----A-NGAF-RTRDELKKVSRLGEKTFEQAAGF  557 (785)
T ss_dssp             HHHHTSTTCC-HHHHHHHHHHHH----H-HCCC-SSGGGGGGSTTCCHHHHHHHGGG
T ss_pred             HHHHCCCCCC-HHHHHHHHHHHH----H-CCCC-CCHHHHHHCCCCCHHHHHHCCEE
T ss_conf             7753257878-899999999999----5-7995-77999973678660217652567


No 115
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1
Probab=47.00  E-value=3.7  Score=20.12  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=18.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             6873145688888777877667
Q gi|254780479|r  112 NFPHKVEILKKLPGIGDYTASA  133 (356)
Q Consensus       112 ~~P~~~~~l~~LpGiG~yta~a  133 (356)
                      ..|.|.++|.+++|||+..+.-
T Consensus        42 ~~P~t~~eL~~I~Gvg~~k~~k   63 (81)
T 1d8b_A           42 ILPMNDSAFATLGTVEDKYRRR   63 (81)
T ss_dssp             HCCCSHHHHGGGSCCCHHHHHH
T ss_pred             HCCCCHHHHCCCCCCCHHHHHH
T ss_conf             6899999982799999899999


No 116
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=46.69  E-value=6.5  Score=18.35  Aligned_cols=12  Identities=33%  Similarity=0.542  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             877787766776
Q gi|254780479|r  124 PGIGDYTASAIV  135 (356)
Q Consensus       124 pGiG~yta~ai~  135 (356)
                      ||||+.||..++
T Consensus       209 ~GiG~KtA~kLl  220 (290)
T 1exn_A          209 EGIGAKRGYNII  220 (290)
T ss_dssp             TTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
T ss_conf             985899999999


No 117
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase, nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans R1}
Probab=46.29  E-value=3.6  Score=20.21  Aligned_cols=21  Identities=24%  Similarity=0.558  Sum_probs=18.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             687314568888877787766
Q gi|254780479|r  112 NFPHKVEILKKLPGIGDYTAS  132 (356)
Q Consensus       112 ~~P~~~~~l~~LpGiG~yta~  132 (356)
                      ..|.|.++|..++|||+..+.
T Consensus        41 ~~P~t~~eL~~I~Gig~~k~~   61 (77)
T 2rhf_A           41 RQPRTLAELAEVPGLGEKRIE   61 (77)
T ss_dssp             HCCCSHHHHTTSTTTCHHHHH
T ss_pred             HCCCCHHHHHCCCCCCHHHHH
T ss_conf             397899998079997999999


No 118
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=45.86  E-value=9.3  Score=17.26  Aligned_cols=53  Identities=13%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEECCCCHHH-HHHHHHCCCCCC
Q ss_conf             6873145688888777877667766434---9631312431466-657651975457
Q gi|254780479|r  112 NFPHKVEILKKLPGIGDYTASAIVAIAF---NHFAVVVDTNIER-IISRYFDIIKPA  164 (356)
Q Consensus       112 ~~P~~~~~l~~LpGiG~yta~ai~s~a~---~~~~~~vD~Nv~R-Vl~R~~~~~~~~  164 (356)
                      .-|+..---=..||+|..|-++=++.++   |+++..||++..| .++++++++...
T Consensus        90 ~~~kvi~VtS~~~G~GKTtia~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~  146 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN  146 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTT
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             998189997799999889999999999997799189983688899610036653335


No 119
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=45.42  E-value=5  Score=19.18  Aligned_cols=57  Identities=12%  Similarity=0.189  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             45688888777877667766434963131243146665765197545735689998741
Q gi|254780479|r  117 VEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYA  175 (356)
Q Consensus       117 ~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~~~~~~k~l~~~~  175 (356)
                      -.+|..||+||+-++.....++...+.-..+.+....+.|+-....+.  ....+|.+.
T Consensus         3 m~~L~~LPNig~~~e~~L~~iGI~~~~~L~~~ga~~~y~rLk~~~~~~--~~~~L~aL~   59 (93)
T 3bqs_A            3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSV--CMSELYALE   59 (93)
T ss_dssp             CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTC--CHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCCC--CHHHHHHHH
T ss_conf             677724899999999999993999899998679999999999868996--099999999


No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=43.50  E-value=4  Score=19.83  Aligned_cols=82  Identities=18%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             HHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------CCCCCCCC-H
Q ss_conf             748997898729989999997404634588999877675430----------------------------05786873-1
Q gi|254780479|r   66 QKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVK----------------------------KYEGNFPH-K  116 (356)
Q Consensus        66 ~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~----------------------------~~~g~~P~-~  116 (356)
                      ..|=|+++|+.++.+++.+. .||.| ..|+.+...|+..+.                            -.+|.+|. .
T Consensus        31 ~g~~t~~~l~~~~~~~L~~~-~gls~-~~a~kil~~a~~~~~~~~~ta~~l~~~~~~~~~isTG~~~LD~lLgGGi~~G~  108 (324)
T 2z43_A           31 AGYSSLETLAVASPQDLSVA-AGIPL-STAQKIIKEARDALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRT  108 (324)
T ss_dssp             -------------------------------------------CCCCHHHHHHHHCSCCEECCSCHHHHHHTTTSEETTS
T ss_pred             CCCCCHHHHHCCCHHHHHHH-HCCCH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEECCCCHHHCCCCCCCCCCCE
T ss_conf             69961999971899999987-49899-99999999998742578863999999751797278896775567789741787


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------CCCEEEECCCC
Q ss_conf             4568888877787766776643---------49631312431
Q gi|254780479|r  117 VEILKKLPGIGDYTASAIVAIA---------FNHFAVVVDTN  149 (356)
Q Consensus       117 ~~~l~~LpGiG~yta~ai~s~a---------~~~~~~~vD~N  149 (356)
                      .-++---||.|..+-+.-++..         .+..+.-+|+.
T Consensus       109 itei~G~~GsGKT~l~l~l~~~~~~~~~~gg~~~~vvyidtE  150 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE  150 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             999875888880479999999975479748988649999743


No 121
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics, NPPSFA; 2.00A {Thermotoga maritima MSB8}
Probab=41.60  E-value=8.1  Score=17.68  Aligned_cols=28  Identities=21%  Similarity=0.309  Sum_probs=18.1

Q ss_pred             HHHHHHHHCCCHHHHHCCCHHHHHHHHH
Q ss_conf             5899877489978987299899999974
Q gi|254780479|r   60 YFKKFMQKWPTIFCLSSAKDEEILSAWA   87 (356)
Q Consensus        60 ~~~~~~~~~P~~~~la~a~~~~vl~~w~   87 (356)
                      .-.+|+.|+|-+..=..++.+++.+.|+
T Consensus        83 ~~~K~irRhPhVf~~~~~s~ee~~~~We  110 (116)
T 2yxh_A           83 VVEKISHRKPWLFWEEKISLEEAEKIWK  110 (116)
T ss_dssp             HHHHHHHHCGGGGCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             9999986586545888899999999999


No 122
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=41.08  E-value=5.1  Score=19.13  Aligned_cols=21  Identities=14%  Similarity=0.344  Sum_probs=18.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             687314568888877787766
Q gi|254780479|r  112 NFPHKVEILKKLPGIGDYTAS  132 (356)
Q Consensus       112 ~~P~~~~~l~~LpGiG~yta~  132 (356)
                      ..|.|.++|..++|||++.+.
T Consensus        58 ~~P~t~~eL~~I~Gv~~~k~~   78 (101)
T 2rrd_A           58 SLSSDPEVLLQIDGVTEDKLE   78 (101)
T ss_dssp             HCCCCHHHHHTSTTCCHHHHH
T ss_pred             HCCCCHHHHHCCCCCCHHHHH
T ss_conf             685999998267787999999


No 123
>2zkq_m 40S ribosomal protein S18E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_M 3jyv_M*
Probab=40.89  E-value=7.4  Score=17.96  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             HHCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             300578687314---568888877787766776643
Q gi|254780479|r  106 VKKYEGNFPHKV---EILKKLPGIGDYTASAIVAIA  138 (356)
Q Consensus       106 ~~~~~g~~P~~~---~~l~~LpGiG~yta~ai~s~a  138 (356)
                      +-=.|-.+|.+.   -.|..+-|||+.+|.+|+..+
T Consensus        13 vRI~g~dI~g~K~v~~aLt~I~GIG~~~A~~Ic~~l   48 (152)
T 2zkq_m           13 LRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKA   48 (152)
T ss_dssp             CCCSTTCCCCSSBHHHHGGGSTTCCHHHHHHHHHHH
T ss_pred             HHEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             413285279997887650021065899999999993


No 124
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=39.12  E-value=7.9  Score=17.75  Aligned_cols=39  Identities=15%  Similarity=0.278  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCCC
Q ss_conf             777877667766434---963131243146665765197545
Q gi|254780479|r  125 GIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIKP  163 (356)
Q Consensus       125 GiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~~  163 (356)
                      |||..|..+=++.+.   |.++.+||....+-++..++...+
T Consensus        47 GvGKTT~a~nlA~~LA~~G~rVllID~D~q~~lt~~l~~~~~   88 (298)
T 2oze_A           47 GVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFK   88 (298)
T ss_dssp             SSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCC
T ss_conf             818999999999999977990899946878886566464334


No 125
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=38.07  E-value=6.1  Score=18.58  Aligned_cols=21  Identities=14%  Similarity=0.283  Sum_probs=18.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             687314568888877787766
Q gi|254780479|r  112 NFPHKVEILKKLPGIGDYTAS  132 (356)
Q Consensus       112 ~~P~~~~~l~~LpGiG~yta~  132 (356)
                      ..|.+.++|..++|||+..+.
T Consensus        49 ~~P~t~~eL~~I~Gvg~~k~~   69 (89)
T 1wud_A           49 QMPITASEMLSVNGVGMRKLE   69 (89)
T ss_dssp             HCCCSHHHHHTSTTCCHHHHH
T ss_pred             HCCCCHHHHCCCCCCCHHHHH
T ss_conf             788999998079998999999


No 126
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=37.48  E-value=9.8  Score=17.11  Aligned_cols=12  Identities=17%  Similarity=0.138  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999962
Q gi|254780479|r    8 IQSKILDWYDTN   19 (356)
Q Consensus         8 ~~~~ll~w~~~~   19 (356)
                      +...++.=+.+-
T Consensus        10 l~~~~~~~l~~~   21 (702)
T 2p6r_A           10 ISSYAVGILKEE   21 (702)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HCHHHHHHHHHC
T ss_conf             369999999977


No 127
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=36.36  E-value=5.8  Score=18.71  Aligned_cols=11  Identities=36%  Similarity=0.857  Sum_probs=5.6

Q ss_pred             CCCC-CCCCCCC
Q ss_conf             2899-8875485
Q gi|254780479|r   19 NHRV-LPWRTSP   29 (356)
Q Consensus        19 ~~R~-lpwr~~~   29 (356)
                      .+|. .+||-.|
T Consensus         4 ~~~~~~~~~~~p   15 (311)
T 2ziu_A            4 TGRTAMGWHLSP   15 (311)
T ss_dssp             ------CCCBCT
T ss_pred             CCCCCCCCCCCC
T ss_conf             665366633389


No 128
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=36.36  E-value=17  Score=15.37  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCC
Q ss_conf             8777877667766434---96313124314666576519754
Q gi|254780479|r  124 PGIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIK  162 (356)
Q Consensus       124 pGiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~  162 (356)
                      .|||..|.++=++..+   |.++.+||.....=++.+++++.
T Consensus         9 GGvGKTt~a~~lA~~la~~g~~VlliD~D~~~~l~~~lg~~~   50 (254)
T 3kjh_A            9 GGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSI   50 (254)
T ss_dssp             SSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCC
T ss_conf             822799999999999996899689997899969688829875


No 129
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=35.97  E-value=12  Score=16.42  Aligned_cols=31  Identities=10%  Similarity=-0.077  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf             5688888777877667766434963131243
Q gi|254780479|r  118 EILKKLPGIGDYTASAIVAIAFNHFAVVVDT  148 (356)
Q Consensus       118 ~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~  148 (356)
                      +++..+..+..+...++....-+-...++|+
T Consensus       137 ~e~~~l~~~~~~l~~~~~~~~~~yD~IviDt  167 (354)
T 2woj_A          137 DEALSFMEVMKHIKRQEQGEGETFDTVIFDT  167 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCSCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             7788699999999997753324677465348


No 130
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Probab=35.12  E-value=15  Score=15.82  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             88999877675430057868731456888
Q gi|254780479|r   94 RARNLKKCADIIVKKYEGNFPHKVEILKK  122 (356)
Q Consensus        94 Rar~l~~~a~~i~~~~~g~~P~~~~~l~~  122 (356)
                      |-+.+.++|+.|+++|...|-.|++.=..
T Consensus         5 r~k~iKr~a~~lieky~~~ft~DF~~NK~   33 (62)
T 1rq6_A            5 RTSFVKRIAKEMIETHPGKFTDDFDTNKK   33 (62)
T ss_dssp             CCHHHHHHHHHHHTTSCCCCCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCHHCCCHHHHHH
T ss_conf             41799999999999871540478889889


No 131
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=33.76  E-value=21  Score=14.80  Aligned_cols=40  Identities=15%  Similarity=0.188  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCCCC
Q ss_conf             777877667766434---9631312431466657651975457
Q gi|254780479|r  125 GIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIKPA  164 (356)
Q Consensus       125 GiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~~~  164 (356)
                      |||..|-++=++.++   |.++.++|.+..--+..+++.....
T Consensus        17 GvGKTTia~nlA~~La~~g~~VllID~D~q~~~~~~l~~~~~~   59 (257)
T 1wcv_1           17 GVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAER   59 (257)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCCSC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC
T ss_conf             8769999999999999779988999648999833331676433


No 132
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis}
Probab=32.84  E-value=11  Score=16.77  Aligned_cols=49  Identities=20%  Similarity=0.118  Sum_probs=35.1

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             404634588999877675430057868731456888887778776677664
Q gi|254780479|r   87 AGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAI  137 (356)
Q Consensus        87 ~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~  137 (356)
                      +-|+.-.|++|-.+.+.+.--  +--+-.+.++|+.+||+|+.+..-|-.+
T Consensus        19 ~~L~LS~R~~n~L~~~gI~tv--~dL~~~s~~dLl~i~n~G~kSl~EI~~~   67 (79)
T 3gfk_B           19 EELDLSVRSYNCLKRAGINTV--QELANKTEEDMMKVRNLGRKSLEEVKAK   67 (79)
T ss_dssp             GGSCCBHHHHHHHHHTTCCBH--HHHTTCCHHHHTTSTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCCH--HHHHHCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf             984798999999989289679--9998688999975789867379999999


No 133
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=30.36  E-value=6.4  Score=18.42  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=19.9

Q ss_pred             CCCCHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             687314---568888877787766776643
Q gi|254780479|r  112 NFPHKV---EILKKLPGIGDYTASAIVAIA  138 (356)
Q Consensus       112 ~~P~~~---~~l~~LpGiG~yta~ai~s~a  138 (356)
                      .+|.+.   -.|..+-|||+.+|.+|+..+
T Consensus         8 ~i~~~K~v~~aLt~I~GIG~~~A~~Ic~~l   37 (126)
T 2vqe_M            8 EIPRNKRVDVALTYIYGIGKARAKEALEKT   37 (126)
T ss_dssp             CCCCSSBHHHHHTTSSSCCSHHHHHHTTTT
T ss_pred             CCCCCCEEEEEECCEECCCHHHHHHHHHHC
T ss_conf             489997878762043483899999999985


No 134
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular modeling; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=29.69  E-value=24  Score=14.34  Aligned_cols=43  Identities=14%  Similarity=0.247  Sum_probs=32.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046345889998776754300578687314568888877787766776
Q gi|254780479|r   88 GLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIV  135 (356)
Q Consensus        88 gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~  135 (356)
                      ..||. .|.+....+|.|+..   .+| +-..|+.||+||+..+..+.
T Consensus       132 ~~~~~-~a~~~l~l~q~i~q~---~w~-~~~~L~Qlp~i~~~~~~~l~  174 (328)
T 3im1_A          132 ANGYL-NATTAMDLAQMLIQG---VWD-VDNPLRQIPHFNNKILEKCK  174 (328)
T ss_dssp             HTTBT-THHHHHHHHHHHHHT---SCT-TSCGGGGSTTCCHHHHHHHH
T ss_pred             CCCHH-HHHHHHHHHHHHHHH---CCC-CCCHHHHHHHCCHHHHHHHH
T ss_conf             16879-999999999998865---589-98666766207999999999


No 135
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=28.13  E-value=15  Score=15.90  Aligned_cols=100  Identities=20%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             HHHHHHH--HHHHHHCCHHHCCH----HHHHHHHHCCCHHHHHCCCHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             0467664--46731161203326----58998774899789872998999999--7404634588999877675430057
Q gi|254780479|r   39 PYKVWIS--EIMLQQTTVKTVEP----YFKKFMQKWPTIFCLSSAKDEEILSA--WAGLGYYTRARNLKKCADIIVKKYE  110 (356)
Q Consensus        39 py~v~vs--eimlqqT~v~~v~~----~~~~~~~~~P~~~~la~a~~~~vl~~--w~gLGyy~Rar~l~~~a~~i~~~~~  110 (356)
                      -|+|+|-  -+-|--.+|+.|-|    -|++.+++|.-+-+-..-..-++|..  |..-  ---||+|--....+.   |
T Consensus       142 lyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtph--deiarrlglsvseve---g  216 (519)
T 2csb_A          142 LYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPH--DEIARRLGLSVSEVE---G  216 (519)
T ss_dssp             HHHHHHHTTCTTTSCSSGGGCCGGGTTTTHHHHHHTTCCCCHHHHHHHHHHHHCTTCCH--HHHHHHHTCCHHHHH---C
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH--HHHHHHHCCCHHHHC---C
T ss_conf             99999996552303300054895550179999997179977378999999960899972--899998488533413---7


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf             868731456888887778776677664349631312431466
Q gi|254780479|r  111 GNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIER  152 (356)
Q Consensus       111 g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~R  152 (356)
                      .+=|++       .||-.--+..+..|.|++..+  .-+|+|
T Consensus       217 ekdpes-------sgiyslwsrvvvnieyderta--krhvkr  249 (519)
T 2csb_A          217 EKDPES-------SGIYSLWSRVVVNIEYDERTA--KRHVKR  249 (519)
T ss_dssp             CSSSSS-------CSHHHHHHHHHTTSCCCHHHH--HHHHHH
T ss_pred             CCCCCC-------CCHHHHHHHHEEEEEECHHHH--HHHHHH
T ss_conf             779420-------118887666347533235678--888778


No 136
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=27.92  E-value=17  Score=15.45  Aligned_cols=88  Identities=10%  Similarity=0.104  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHH---CCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHC--CCCC
Q ss_conf             0467664467311---6120332658998774899789872998999999740463-45889998776754300--5786
Q gi|254780479|r   39 PYKVWISEIMLQQ---TTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGY-YTRARNLKKCADIIVKK--YEGN  112 (356)
Q Consensus        39 py~v~vseimlqq---T~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGy-y~Rar~l~~~a~~i~~~--~~g~  112 (356)
                      -+..|+.+-..+.   ++..+...+|++++.-|.+. .|.+-+..+|.....++++ ++-+++.+..-+.+.+.  -.|.
T Consensus         7 ~~~~wl~~~~~~~~~~~T~~~~~~~~~~~~~~lg~~-~l~~It~~~i~~~l~~~~~s~~t~~~~~~~l~~~f~~Av~~~~   85 (108)
T 2kob_A            7 WAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMK-SLSEILPADIQSIINETKLAKNTLKAIRNTASQIFRLAIENRA   85 (108)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHTSHHHHTS-BGGGCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999974728989999999999999999998688-1999878899999987332668999999999999999998888


Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             873145688888777
Q gi|254780479|r  113 FPHKVEILKKLPGIG  127 (356)
Q Consensus       113 ~P~~~~~l~~LpGiG  127 (356)
                      ++.+..+-+++|=++
T Consensus        86 i~~NP~~~vk~Pk~~  100 (108)
T 2kob_A           86 IDFNPADYVRIPKIA  100 (108)
T ss_dssp             SSSCGGGTCCCCCCC
T ss_pred             CCCCHHHCCCCCCCC
T ss_conf             022916238689998


No 137
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=27.46  E-value=26  Score=14.08  Aligned_cols=37  Identities=24%  Similarity=0.382  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHH---CCCEEEECCCCHH-HHHHHHHCCC
Q ss_conf             77787766776643---4963131243146-6657651975
Q gi|254780479|r  125 GIGDYTASAIVAIA---FNHFAVVVDTNIE-RIISRYFDII  161 (356)
Q Consensus       125 GiG~yta~ai~s~a---~~~~~~~vD~Nv~-RVl~R~~~~~  161 (356)
                      |||..|.++=++.+   .|.++.++|.+.. ..++.++|++
T Consensus        13 GvGKTtia~nlA~~la~~g~kVlliD~D~~~~~~~~~lg~~   53 (263)
T 1hyq_A           13 GTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGME   53 (263)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC
T ss_conf             87199999999999996899899995889989878981987


No 138
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=26.77  E-value=27  Score=14.00  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCC
Q ss_conf             8777877667766434---9631312431466657651975
Q gi|254780479|r  124 PGIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDII  161 (356)
Q Consensus       124 pGiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~  161 (356)
                      =|||..|.+|-++.++   |.++.+||.....=++.++|++
T Consensus        25 GGVGKTT~aanlA~~lA~~G~rVLlvD~Dpq~~ls~~lg~~   65 (334)
T 3iqw_A           25 GGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQK   65 (334)
T ss_dssp             TTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCC
T ss_conf             97719999999999999789948999389998878871987


No 139
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=25.57  E-value=5.1  Score=19.08  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             HCCCCCCCCHHHHHHHH-----------HHHHHHHHHHHHHH
Q ss_conf             00578687314568888-----------87778776677664
Q gi|254780479|r  107 KKYEGNFPHKVEILKKL-----------PGIGDYTASAIVAI  137 (356)
Q Consensus       107 ~~~~g~~P~~~~~l~~L-----------pGiG~yta~ai~s~  137 (356)
                      ++| |.-|+.+-++++|           ||||+.||..++.-
T Consensus       170 ~~~-gv~p~~~~d~~~l~GD~sDnipGv~giG~ktA~~ll~~  210 (832)
T 1bgx_T          170 EKY-GLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEE  210 (832)
T ss_dssp             HHT-CCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGG
T ss_pred             HHH-CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             997-77962677788870875457888665574779999861


No 140
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.86  E-value=6.8  Score=18.20  Aligned_cols=16  Identities=13%  Similarity=0.310  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8888877787766776
Q gi|254780479|r  120 LKKLPGIGDYTASAIV  135 (356)
Q Consensus       120 l~~LpGiG~yta~ai~  135 (356)
                      +..|+|||+.+|.+..
T Consensus       117 i~~lkGVGpk~a~~L~  132 (780)
T 1gm5_A          117 IQYAKGVGPNRKKKLK  132 (780)
T ss_dssp             SSSSSSCCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHH
T ss_conf             6017881599999999


No 141
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=24.44  E-value=10  Score=16.99  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             HHHHHCCHHHCCHHHHHHHHHCCCHHH-HHCCCHH
Q ss_conf             673116120332658998774899789-8729989
Q gi|254780479|r   47 IMLQQTTVKTVEPYFKKFMQKWPTIFC-LSSAKDE   80 (356)
Q Consensus        47 imlqqT~v~~v~~~~~~~~~~~P~~~~-la~a~~~   80 (356)
                      -.|||-||+     |-.|++.|-++++ +|.|.+|
T Consensus        30 e~lqqlr~~-----ygs~~se~dDLeEkla~aKeE   59 (77)
T 3mtu_E           30 EALQQLRVN-----YGSFVSEYNDLEEKVAHAKEE   59 (77)
T ss_dssp             HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999988-----757989986899999998876


No 142
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=24.04  E-value=13  Score=16.32  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=18.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             8687314568888877787766
Q gi|254780479|r  111 GNFPHKVEILKKLPGIGDYTAS  132 (356)
Q Consensus       111 g~~P~~~~~l~~LpGiG~yta~  132 (356)
                      ...|.|.++|..++|||...+.
T Consensus        50 ~~~P~t~~eL~~I~G~g~~k~~   71 (103)
T 2e1f_A           50 KMRPTTVENVKRIDGVSEGKAA   71 (103)
T ss_dssp             HHCCCSHHHHTTSTTCCHHHHH
T ss_pred             HHCCCCHHHHHCCCCCCHHHHH
T ss_conf             8789999999378998999999


No 143
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A*
Probab=23.37  E-value=31  Score=13.57  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEE-C-CCCHHHHHHHHHCC
Q ss_conf             88888777877667766434963131-2-43146665765197
Q gi|254780479|r  120 LKKLPGIGDYTASAIVAIAFNHFAVV-V-DTNIERIISRYFDI  160 (356)
Q Consensus       120 l~~LpGiG~yta~ai~s~a~~~~~~~-v-D~Nv~RVl~R~~~~  160 (356)
                      +..|||||+.|+..+.+..+|..... + +..-...|.+.||.
T Consensus       243 v~~LpGIG~~~~~kL~~~~~Gi~ti~DL~~~~~~~~L~~~fG~  285 (434)
T 2aq4_A          243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGS  285 (434)
T ss_dssp             GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCS
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCEEHHHHHHHCCHHHHHHHHCC
T ss_conf             2106686789999999876588079997632829899999674


No 144
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=22.80  E-value=15  Score=15.90  Aligned_cols=17  Identities=12%  Similarity=0.176  Sum_probs=10.6

Q ss_pred             CCCCHHHHHHHHHCCCC
Q ss_conf             24314666576519754
Q gi|254780479|r  146 VDTNIERIISRYFDIIK  162 (356)
Q Consensus       146 vD~Nv~RVl~R~~~~~~  162 (356)
                      .||--.+=..|-|.+..
T Consensus        38 ~~g~~~K~~YR~f~ik~   54 (226)
T 3c65_A           38 LDGKPAKKEYRKYKVKT   54 (226)
T ss_dssp             ETTEECGGGCEEEECCC
T ss_pred             ECCCCCHHHCCCCCCCC
T ss_conf             78953867660226567


No 145
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=22.50  E-value=32  Score=13.46  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHCCCCCCC
Q ss_conf             88777877667766434---96313124314666576519754573
Q gi|254780479|r  123 LPGIGDYTASAIVAIAF---NHFAVVVDTNIERIISRYFDIIKPAP  165 (356)
Q Consensus       123 LpGiG~yta~ai~s~a~---~~~~~~vD~Nv~RVl~R~~~~~~~~~  165 (356)
                      --|+|..|-++-++.++   |.++..||.+-..=++.+|+.+....
T Consensus       152 kGGvGKTT~A~~LA~~LA~~g~kVLliD~D~~~~~~~~l~~~~~~~  197 (373)
T 3fkq_A          152 CGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNAT  197 (373)
T ss_dssp             STTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCCCC
T ss_conf             9995199999999999983899599993899999689729988987


No 146
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=22.01  E-value=14  Score=15.94  Aligned_cols=48  Identities=21%  Similarity=0.139  Sum_probs=33.0

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             40463458899987767543005786873145688888777877667766
Q gi|254780479|r   87 AGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVA  136 (356)
Q Consensus        87 ~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s  136 (356)
                      +-|+.-.|+.|-.+.+.+.-  .+--+--+.++|+.+||+|+.+-.-|-.
T Consensus        12 ~~L~LS~R~~N~L~~~~I~t--v~dL~~~s~~dLl~i~n~G~kSl~EI~~   59 (73)
T 1z3e_B           12 EELDLSVRSYNCLKRAGINT--VQELANKTEEDMMKVRNLGRKSLEEVKA   59 (73)
T ss_dssp             GGSCCBHHHHHHHHHTTCCB--HHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCC--HHHHHHCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             88469899999998948967--9999868999997478986605999999


No 147
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=21.94  E-value=22  Score=14.67  Aligned_cols=37  Identities=27%  Similarity=0.187  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCC
Q ss_conf             88888777877667766434963131243146665765197
Q gi|254780479|r  120 LKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDI  160 (356)
Q Consensus       120 l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~  160 (356)
                      |.-+||+|..|-+-.+|-.+|.+..=+|    +++.+.+|.
T Consensus         7 l~G~~GsGKSTiak~La~~L~~~~iD~D----~~ie~~~g~   43 (184)
T 2iyv_A            7 LVGLPGSGKSTIGRRLAKALGVGLLDTD----VAIEQRTGR   43 (184)
T ss_dssp             EECSTTSSHHHHHHHHHHHHTCCEEEHH----HHHHHHHSS
T ss_pred             EECCCCCCHHHHHHHHHHHHCCCEEECC----HHHHHHHCC
T ss_conf             9879999889999999999698968388----789987548


No 148
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=21.61  E-value=34  Score=13.34  Aligned_cols=23  Identities=13%  Similarity=0.257  Sum_probs=16.5

Q ss_pred             ECHHHHHHCC-CCHHHHHHHHHCC
Q ss_conf             2278887479-9878999998448
Q gi|254780479|r  329 HDAQNLANAA-LPTVMKKALSAGG  351 (356)
Q Consensus       329 v~~~el~~~~-LPs~~kKIL~alg  351 (356)
                      .+.+||.+++ .++.-++|.+.+|
T Consensus       197 As~eeL~~v~g~~k~A~~I~~~l~  220 (220)
T 2nrt_A          197 ASLEEIARVIGSTEIARRVLDILG  220 (220)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHHC-
T ss_pred             CCHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             899999868695999999999719


No 149
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=21.09  E-value=34  Score=13.26  Aligned_cols=82  Identities=15%  Similarity=0.217  Sum_probs=43.9

Q ss_pred             HHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             11612033265899877489978987299899999974046345889998776754300578687314568888877787
Q gi|254780479|r   50 QQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDY  129 (356)
Q Consensus        50 qqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~y  129 (356)
                      ...++...+.|+.||+.+.+-..       +++             .-+-.+|=.|..++....|-..+++..+-+ |.|
T Consensus        74 ~~et~~lAv~~lDRfl~~~~v~~-------~~l-------------qLia~acL~IAsK~ee~~~~~~~~l~~~~~-~~~  132 (271)
T 2w96_A           74 EEEVFPLAMNYLDRFLSLEPVKK-------SRL-------------QLLGATCMFVASKMKETIPLTAEKLCIYTD-NSI  132 (271)
T ss_dssp             CTTHHHHHHHHHHHHHTTSCCCT-------TTH-------------HHHHHHHHHHHHHHHCSSCCCHHHHHHHTT-TSS
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCH-------HHH-------------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHC-CCC
T ss_conf             88899999999999856786667-------899-------------999999999999634577996999999963-889


Q ss_pred             HHHHHHH--------HHCCCEEEECCCCHHH
Q ss_conf             7667766--------4349631312431466
Q gi|254780479|r  130 TASAIVA--------IAFNHFAVVVDTNIER  152 (356)
Q Consensus       130 ta~ai~s--------~a~~~~~~~vD~Nv~R  152 (356)
                      |...|..        +.|+...|....-+.+
T Consensus       133 t~~~i~~mE~~IL~~L~f~l~~pTp~~fl~~  163 (271)
T 2w96_A          133 RPEELLQMELLLVNKLKWNLAAMTPHDFIEH  163 (271)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             8999999999999981888889985999999


Done!