Query         gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 367
No_of_seqs    242 out of 475
Neff          5.3 
Searched_HMMs 13730
Date          Wed Jun  1 06:58:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780480.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1xs1a_ b.85.4.1 (A:) Deoxycyt 100.0 9.7E-41   7E-45  282.8  13.9  156    4-166     1-165 (193)
  2 d1pkha_ b.85.4.1 (A:) Bifuncti 100.0 1.5E-39 1.1E-43  275.1  16.4  156    4-166     1-171 (182)
  3 d1xs1a_ b.85.4.1 (A:) Deoxycyt 100.0 4.9E-34 3.6E-38  239.0  13.7  184  166-365     1-193 (193)
  4 d1pkha_ b.85.4.1 (A:) Bifuncti  99.9   6E-25 4.4E-29  179.7   9.8  164  166-347     1-180 (182)
  5 d1duna_ b.85.4.1 (A:) Deoxyuri  99.6   4E-15 2.9E-19  115.6   8.1   84   74-165    24-108 (120)
  6 d1f7da_ b.85.4.1 (A:) Deoxyuri  99.5 1.3E-13 9.2E-18  105.8   8.7   83   74-164    23-106 (118)
  7 d2bsya2 b.85.4.1 (A:121-256) M  99.3 2.2E-12 1.6E-16   97.6   7.3   82   74-166    19-101 (136)
  8 d2bsya1 b.85.4.1 (A:4-116) Mon  99.3 2.6E-11 1.9E-15   90.7  11.3   81   74-165    28-109 (113)
  9 d1duna_ b.85.4.1 (A:) Deoxyuri  99.2 6.5E-11 4.7E-15   88.1  10.7   90  249-346    26-117 (120)
 10 d3ehwa1 b.85.4.1 (A:24-159) De  99.2 4.5E-11 3.3E-15   89.1   9.2   83   74-164    30-114 (136)
 11 d1vyqa1 b.85.4.1 (A:1-159) Deo  99.1 2.7E-10   2E-14   84.0   9.2  120   32-165    25-145 (159)
 12 d1euwa_ b.85.4.1 (A:) Deoxyuri  99.1 4.4E-10 3.2E-14   82.6   9.3   85   74-164    38-125 (136)
 13 d1sixa_ b.85.4.1 (A:) Deoxyuri  99.0 6.4E-10 4.7E-14   81.6   7.9   85   74-164    41-128 (153)
 14 d1f7da_ b.85.4.1 (A:) Deoxyuri  98.9 2.9E-09 2.1E-13   77.3   9.7   83  249-337    25-107 (118)
 15 d2bsya1 b.85.4.1 (A:4-116) Mon  98.8 4.1E-08   3E-12   69.8  12.0   84  247-339    28-111 (113)
 16 d3ehwa1 b.85.4.1 (A:24-159) De  98.6 1.4E-07 1.1E-11   66.2   9.7   85  249-339    32-117 (136)
 17 d1sixa_ b.85.4.1 (A:) Deoxyuri  98.5 8.3E-07   6E-11   61.3  10.0   86  249-340    43-132 (153)
 18 d2bsya2 b.85.4.1 (A:121-256) M  98.4 1.2E-06 8.4E-11   60.3   9.5   98  249-358    21-120 (136)
 19 d1euwa_ b.85.4.1 (A:) Deoxyuri  98.4 2.4E-06 1.8E-10   58.2  11.1   86  247-338    38-127 (136)
 20 d1vyqa1 b.85.4.1 (A:1-159) Deo  97.9 2.2E-05 1.6E-09   52.0   8.2   77  256-338    68-146 (159)
 21 d2caya1 b.55.1.12 (A:1-99,A:25  50.7     2.5 0.00018   19.0   1.1   31  235-268     2-32  (130)
 22 d1r57a_ d.108.1.1 (A:) Hypothe  48.1     6.9  0.0005   16.1   3.0   35  323-357    18-52  (102)
 23 d2a1xa1 b.82.2.9 (A:43-338) Ph  45.1     4.8 0.00035   17.2   1.8   32    1-32      6-37  (296)
 24 d1go3e2 d.230.1.1 (E:1-78) N-t  31.3      10 0.00073   15.0   1.7   69  257-333     2-72  (78)

No 1  
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=9.7e-41  Score=282.81  Aligned_cols=156  Identities=22%  Similarity=0.343  Sum_probs=132.8

Q ss_pred             CCCCHHHHHHHHHCCCEEECCCCCH-HHCCCCEEEEEECCEEEEEECCCCCCCC-----CCHHHHCCCC--EEEEEECCC
Q ss_conf             6158689999998798498178986-5657122588758989998123157888-----6211000240--478873688
Q gi|254780480|r    4 GVLPDKAIATLAERGDIVSEHPLEK-NQIQPASIDLRLSSKAYRVRASFLPNID-----GLVSDKIKHF--KLREIDLSG   75 (367)
Q Consensus         4 GILsd~~I~~li~~g~I~i~~p~~~-~QIQPaSiDLRLG~~~~rv~asflp~~~-----~~v~~~l~~~--~~~eidl~~   75 (367)
                      |||||++|++++++|.|.++ |+++ +||||||+|||||+++++++.+.-+..+     ..+.+.++..  ....++.++
T Consensus         1 MiLSd~~I~~~i~~g~I~i~-P~~~~~qiqp~s~DLrLg~~~~v~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (193)
T d1xs1a_           1 MRLCDRDIEAWLDEGRLSIN-PRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGE   79 (193)
T ss_dssp             CBCCHHHHHHHHHHTSSEEE-SCCCGGGEETTEEEEEBCSEEBCBCGGGCSCEETTSCHHHHHHHHHHHBCCCEECCTTC
T ss_pred             CCCCHHHHHHHHHCCCEEEC-CCCHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC
T ss_conf             95788999999986995871-68721015784599873667999954465203567775023333221034215505786


Q ss_pred             CEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEECCC
Q ss_conf             6486687329999888998499827998601343112503423207877554236674438999951686-527983398
Q gi|254780480|r   76 GTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVRVGS  154 (367)
Q Consensus        76 g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~~G~  154 (367)
                      +|+|+||++||++|+|+|+||+|++|.++||||+||+||++|++++      +|||||+|++||||.|.+ +||++++||
T Consensus        80 ~~~L~Pg~~~L~~T~E~v~lP~~~~a~~~~rSS~~R~Gl~~~~~ag------~~dpG~~G~ltlel~n~~~~pi~i~~g~  153 (193)
T d1xs1a_          80 AFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAH------RIDPGWSGCIVLEFYNSGKLPLALRPGM  153 (193)
T ss_dssp             CEEECTTCCEEEEEEEEEECCTTEEEEEECCHHHHTTTEESCSSCC------EECTTCEEEEEEEEEECSSSCEEECTTS
T ss_pred             EEEEECCCEEEEEEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC------EECCCCCEEEEEEEEECCCCEEEECCCC
T ss_conf             1998189899999777886483548999814660005778851354------8779976069999996774269975899


Q ss_pred             EEEEEEEEECCC
Q ss_conf             035689850887
Q gi|254780480|r  155 RLSQIRFVKERK  166 (367)
Q Consensus       155 rl~Qi~f~~g~~  166 (367)
                      |||||+|++...
T Consensus       154 ~i~Qlvf~~~~~  165 (193)
T d1xs1a_         154 LIGALSFEPLSG  165 (193)
T ss_dssp             EEEEEEEEECSS
T ss_pred             EEEEEEEEECCC
T ss_conf             899999998878


No 2  
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00  E-value=1.5e-39  Score=275.07  Aligned_cols=156  Identities=22%  Similarity=0.233  Sum_probs=135.7

Q ss_pred             CCCCHHHHHHHHHCCCEEECCCCCHHHCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHCCCCEEE--------------
Q ss_conf             615868999999879849817898656571225887589899981231578886211000240478--------------
Q gi|254780480|r    4 GVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLR--------------   69 (367)
Q Consensus         4 GILsd~~I~~li~~g~I~i~~p~~~~QIQPaSiDLRLG~~~~rv~asflp~~~~~v~~~l~~~~~~--------------   69 (367)
                      |||||++|++++++|.|.++ ||+++||||||+|||||+.++++..+.++..+....+++......              
T Consensus         1 MiLsd~~I~~~~~~g~i~i~-Pf~~~qiqp~s~DLrLg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (182)
T d1pkha_           1 MILSDKDIIDYVTSKRIIIK-PFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKI   79 (182)
T ss_dssp             CBCCHHHHHHHHHTTSSEEE-SCCGGGBCSSCEEEEBCSEEEEECCSSCCTTSCCCEEEEECSSEEEEECTTCCCCHHHH
T ss_pred             CCCCHHHHHHHHHCCCEEEC-CCCHHHCCCCCCCEEECCEEEEEECCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCE
T ss_conf             91688999999974994684-89878838661243742389999442367445665311135543042454344454431


Q ss_pred             -EEECCCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCE
Q ss_conf             -8736886486687329999888998499827998601343112503423207877554236674438999951686527
Q gi|254780480|r   70 -EIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPI  148 (367)
Q Consensus        70 -eidl~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~sfpI  148 (367)
                       .+..+++++|.|+.+||++|+|+|++|+|++|.++||||++|+|++++.+++      +|||||+|++||||+|.++||
T Consensus        80 ~~~~~~~~~~l~p~~~~L~~t~E~v~lp~~~~~~~~~kSS~aR~G~~~~~ta~------~iDpGy~G~ltlei~n~~~pi  153 (182)
T d1pkha_          80 NYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAG------WIDAGFKGKITLEIVAFDKPV  153 (182)
T ss_dssp             HHHHHHHCCSEEEESCEEEEEEEEEECCTTEEEEEEECHHHHTTTEESCSSCC------EECTTCEEEEEEEEEESSSCE
T ss_pred             EEEECCCCEEECCCCEEEEEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCE------EECCCCCCEEEEEEEECCCCE
T ss_conf             68734786077179879999976999547215899734402443100212332------889998766999999789898


Q ss_pred             EEECCCEEEEEEEEECCC
Q ss_conf             983398035689850887
Q gi|254780480|r  149 VVRVGSRLSQIRFVKERK  166 (367)
Q Consensus       149 ~v~~G~rl~Qi~f~~g~~  166 (367)
                      +||+|||||||+|++.+.
T Consensus       154 ~I~~g~ri~Ql~F~~~~~  171 (182)
T d1pkha_         154 ILYKNQRIGQLIFSKLLS  171 (182)
T ss_dssp             EEETTCEEEEEEEEECSS
T ss_pred             EECCCCEEEEEEEEECCC
T ss_conf             980899899999998777


No 3  
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=4.9e-34  Score=239.04  Aligned_cols=184  Identities=21%  Similarity=0.300  Sum_probs=146.2

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHH----HHHHC
Q ss_conf             76899999998752786036655443373167888145545666630455126775130156555587786----64311
Q gi|254780480|r  166 KFCSQEELSALHELSPLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDF----WDPLF  241 (367)
Q Consensus       166 ~~LsD~eL~~lh~~~~LV~~~~~~~~~~Gl~~sVdL~~~~~~~~~iiGyrAkkht~~IDl~k~~~y~~~df----we~i~  241 (367)
                      ++|||.+++++.++..++.++.++. .+..+.|+||+..    +.+.-|++. +++.||++.+..-..+.+    |++..
T Consensus         1 MiLSd~~I~~~i~~g~I~i~P~~~~-~qiqp~s~DLrLg----~~~~v~~~~-~~~~id~~~~~~~~~~~~~~~~~~~~~   74 (193)
T d1xs1a_           1 MRLCDRDIEAWLDEGRLSINPRPPV-ERINGATVDVRLG----NKFRTFRGH-TAAFIDLSGPKDEVSAALDRVMSDEIV   74 (193)
T ss_dssp             CBCCHHHHHHHHHHTSSEEESCCCG-GGEETTEEEEEBC----SEEBCBCGG-GCSCEETTSCHHHHHHHHHHHBCCCEE
T ss_pred             CCCCHHHHHHHHHCCCEEECCCCHH-HCCCCCEEEEECC----CEEEEEECC-CCCCCCCCCCCCHHHHHHHHCCCCEEE
T ss_conf             9578899999998699587168721-0157845998736----679999544-652035677750233332210342155


Q ss_pred             CCCCCCCEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCC--CCCEEEECCEEECCCCCCCCCCCCCCEEEEEECC--C
Q ss_conf             35577753998899789998633444283401644530433--3421342160456886654345667504788617--8
Q gi|254780480|r  242 SWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHS--IGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRS--S  317 (367)
Q Consensus       242 ~~~~~~~~~~l~p~~F~l~~s~E~v~iP~~~aae~~~~~~~--~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~--~  317 (367)
                      .  ..++.++|+||+|||+.|.|+|++|+|++|.+.+.++.  .|.+.+.+|||+||||.|..        +||+.|  .
T Consensus        75 ~--~~~~~~~L~Pg~~~L~~T~E~v~lP~~~~a~~~~rSS~~R~Gl~~~~~ag~~dpG~~G~l--------tlel~n~~~  144 (193)
T d1xs1a_          75 L--DEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCI--------VLEFYNSGK  144 (193)
T ss_dssp             C--CTTCCEEECTTCCEEEEEEEEEECCTTEEEEEECCHHHHTTTEESCSSCCEECTTCEEEE--------EEEEEECSS
T ss_pred             E--CCCCEEEEECCCEEEEEEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCEECCCCCEEE--------EEEEEECCC
T ss_conf             0--578619981898999997778864835489998146600057788513548779976069--------999996774


Q ss_pred             CCEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCHHHHHHH
Q ss_conf             88899479888999997637664222375434723266-6773443430
Q gi|254780480|r  318 VPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ-ALKLSKHFHQ  365 (367)
Q Consensus       318 ~p~~l~~g~~i~~l~~~~~~~~p~~~Yg~~~~s~Yq~Q-gl~lsk~f~~  365 (367)
                      .|+.|++||+||||+|++|+++++++|+...+||||+| |+++||+|+.
T Consensus       145 ~pi~i~~g~~i~Qlvf~~~~~~~~~~Y~~~~~gkYq~q~g~~~sk~~~d  193 (193)
T d1xs1a_         145 LPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYRNQQGAVASRIDKD  193 (193)
T ss_dssp             SCEEECTTSEEEEEEEEECSSCCSSCGGGCTTCSCSSBCSCCCCCGGGC
T ss_pred             CEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             2699758998999999988787543457777985789889876363579


No 4  
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.91  E-value=6e-25  Score=179.71  Aligned_cols=164  Identities=16%  Similarity=0.138  Sum_probs=120.1

Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECC-----CC--------CEEECCCCCCCC
Q ss_conf             76899999998752786036655443373167888145545666630455126-----77--------513015655558
Q gi|254780480|r  166 KFCSQEELSALHELSPLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKR-----HT--------AAIDVDSENKYD  232 (367)
Q Consensus       166 ~~LsD~eL~~lh~~~~LV~~~~~~~~~~Gl~~sVdL~~~~~~~~~iiGyrAkk-----ht--------~~IDl~k~~~y~  232 (367)
                      ++|||.+++++.++..++.++.++  ++-.+.|+||+..    +...-|.+..     ..        ....++..+.+.
T Consensus         1 MiLsd~~I~~~~~~g~i~i~Pf~~--~qiqp~s~DLrLg----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (182)
T d1pkha_           1 MILSDKDIIDYVTSKRIIIKPFNK--DFVGPCSYDVTLG----DEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNL   74 (182)
T ss_dssp             CBCCHHHHHHHHHTTSSEEESCCG--GGBCSSCEEEEBC----SEEEEECCSSCCTTSCCCEEEEECSSEEEEECTTCCC
T ss_pred             CCCCHHHHHHHHHCCCEEECCCCH--HHCCCCCCCEEEC----CEEEEEECCCCCCCCCCCHHHCCCCCCEEECCCCCCC
T ss_conf             916889999999749946848987--8838661243742----3899994423674456653111355430424543444


Q ss_pred             HHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCEEEEEEE--CCCCCCEEEECCEEECCCCCCCCCCCCCCEE
Q ss_conf             77866431135577753998899789998633444283401644530--4333421342160456886654345667504
Q gi|254780480|r  233 ESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPY--DHSIGEFRVHYAGFFDPGFGCVLPQEVGAKA  310 (367)
Q Consensus       233 ~~dfwe~i~~~~~~~~~~~l~p~~F~l~~s~E~v~iP~~~aae~~~~--~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~  310 (367)
                      ....+..+..    ++.++|.|++|||+.|.|+|++|+|++|.+.+.  .+|.|.+.+++|||+||||.|.+        
T Consensus        75 ~~~~~~~~~~----~~~~~l~p~~~~L~~t~E~v~lp~~~~~~~~~kSS~aR~G~~~~~ta~~iDpGy~G~l--------  142 (182)
T d1pkha_          75 TEEKINYFKE----KYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKI--------  142 (182)
T ss_dssp             CHHHHHHHHH----HHCCSEEEESCEEEEEEEEEECCTTEEEEEEECHHHHTTTEESCSSCCEECTTCEEEE--------
T ss_pred             CCCCEEEEEC----CCCEEECCCCEEEEEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEECCCCCCEE--------
T ss_conf             5443168734----7860771798799999769995472158997344024431002123328899987669--------


Q ss_pred             EEEECC-CCCEEEECCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf             788617-8888994798889999976376642223754
Q gi|254780480|r  311 VLEVRS-SVPFVLEHGQIIGRLKYESMDGEPERLYGEA  347 (367)
Q Consensus       311 vLevr~-~~p~~l~~g~~i~~l~~~~~~~~p~~~Yg~~  347 (367)
                      +||+.+ ..|+.|++||+||||+|++|+++++.+|+..
T Consensus       143 tlei~n~~~pi~I~~g~ri~Ql~F~~~~~~~~~~Y~~r  180 (182)
T d1pkha_         143 TLEIVAFDKPVILYKNQRIGQLIFSKLLSPADVGYSER  180 (182)
T ss_dssp             EEEEEESSSCEEEETTCEEEEEEEEECSSCCCCSEEEE
T ss_pred             EEEEEECCCCEEECCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf             99999789898980899899999998777665786767


No 5  
>d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Equine infectious anemia virus [TaxId: 11665]}
Probab=99.57  E-value=4e-15  Score=115.62  Aligned_cols=84  Identities=13%  Similarity=0.189  Sum_probs=75.9

Q ss_pred             CCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEEC
Q ss_conf             886486687329999888998499827998601343112503423207877554236674438999951686-5279833
Q gi|254780480|r   74 SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVRV  152 (367)
Q Consensus        74 ~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~~  152 (367)
                      .+..+++|++..+++|.+.+++|++.+|++.||||++|-|+.++.        ..||+||+|+|++++.|.+ -|+.+++
T Consensus        24 ~ed~~i~p~~~~~i~tg~~i~iP~g~~g~i~~RSsla~~gl~v~~--------GvID~gY~Gei~v~l~N~~~~~~~i~~   95 (120)
T d1duna_          24 PYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLING--------GIIDEGYTGEIQVICTNIGKSNIKLIE   95 (120)
T ss_dssp             SSCEEECTTCEEEEECCCEEECCTTEEEEEECCHHHHHTTEEEEC--------CEEETTCCSCCEEEEEECSSSCEEECT
T ss_pred             CCCEEECCCCEEEEEECEEEECCCCCEEEEEECCCEEECCCCCCC--------CEEECCCCCCEEEEEEECCCCCEEECC
T ss_conf             988899999999999150998589848999613652322885545--------586036668679999978998689879


Q ss_pred             CCEEEEEEEEECC
Q ss_conf             9803568985088
Q gi|254780480|r  153 GSRLSQIRFVKER  165 (367)
Q Consensus       153 G~rl~Qi~f~~g~  165 (367)
                      |+||+||.|.+-.
T Consensus        96 G~rIaQlv~~~~~  108 (120)
T d1duna_          96 GQKFAQLIILQHH  108 (120)
T ss_dssp             TCEEEEEEEEECC
T ss_pred             CCEEEEEEEEECC
T ss_conf             9989999999877


No 6  
>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Feline immunodeficiency virus [TaxId: 11673]}
Probab=99.46  E-value=1.3e-13  Score=105.81  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=75.7

Q ss_pred             CCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEEC
Q ss_conf             886486687329999888998499827998601343112503423207877554236674438999951686-5279833
Q gi|254780480|r   74 SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVRV  152 (367)
Q Consensus        74 ~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~~  152 (367)
                      .+.++++|++.++++|.+++.+|++..|.+.||||++|.|+.+..        ..||+||.|+|++.+.|.+ .|+.+.+
T Consensus        23 ~~~~~I~P~~~~~i~tg~~v~ip~g~~~~i~~RSsl~~~gl~v~~--------GvID~gYrGei~v~l~N~~~~~~~i~~   94 (118)
T d1f7da_          23 AKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLG--------GVIDEGYRGEIGVIMINVSRKSITLME   94 (118)
T ss_dssp             SSCEEECTTCEEEEECCCEECCCTTEEEEEECCHHHHTTTEEEEC--------CEECTTCCSCCEEEEEECSSSCEEECT
T ss_pred             CCCEEECCCCEEEEECCEEEECCCCCEEEEEECCCCEEEEEEECC--------CCCCCCCCCCCEEEEEECCCCCEEECC
T ss_conf             977899999999998786998289966889732220202684110--------121833378728999978998879889


Q ss_pred             CCEEEEEEEEEC
Q ss_conf             980356898508
Q gi|254780480|r  153 GSRLSQIRFVKE  164 (367)
Q Consensus       153 G~rl~Qi~f~~g  164 (367)
                      |+||+|+.|..-
T Consensus        95 G~rIaQlv~~p~  106 (118)
T d1f7da_          95 RQKIAQLIILPC  106 (118)
T ss_dssp             TCEEEEEEEEEC
T ss_pred             CCEEEEEEEEEE
T ss_conf             998999999870


No 7  
>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]}
Probab=99.31  E-value=2.2e-12  Score=97.64  Aligned_cols=82  Identities=9%  Similarity=0.027  Sum_probs=73.5

Q ss_pred             CCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEEC
Q ss_conf             886486687329999888998499827998601343112503423207877554236674438999951686-5279833
Q gi|254780480|r   74 SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVRV  152 (367)
Q Consensus        74 ~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~~  152 (367)
                      .+..+++|++.++++|.+.+.+|++.+|.+.||||++|.|+.+.           ..+||.|+|.+++.|.| -|+.+.+
T Consensus        19 ~e~~~I~P~~~~~v~tgi~~~ip~g~~~~i~~RSsla~kGl~v~-----------~~~~~~Gei~v~l~N~s~~~~~I~~   87 (136)
T d2bsya2          19 PKDLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILVK-----------PCRWRRGGVDVSLTNFSDQTVFLNK   87 (136)
T ss_dssp             SSCEEECTTCEEEEEECSCCCCCTTEEEEEECCHHHHHTTEEEC-----------CEECBTTBEEEEEEECSSSCEEECT
T ss_pred             CCCEEECCCCEEEECCEEEEEECCCEEEEEEECCCCCCCCEEEE-----------CCCEECCEEEEEEEECCCCCEEECC
T ss_conf             98879999998960456899807980899980021030897991-----------9976566799999989897789869


Q ss_pred             CCEEEEEEEEECCC
Q ss_conf             98035689850887
Q gi|254780480|r  153 GSRLSQIRFVKERK  166 (367)
Q Consensus       153 G~rl~Qi~f~~g~~  166 (367)
                      |+|||||.|.+...
T Consensus        88 G~RIaQlVf~~~~~  101 (136)
T d2bsya2          88 YRRFCQLVYLHKHH  101 (136)
T ss_dssp             TCEEEEEEEEEGGG
T ss_pred             CCEEEEEEEEECCC
T ss_conf             99899999984443


No 8  
>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]}
Probab=99.28  E-value=2.6e-11  Score=90.71  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=72.1

Q ss_pred             CCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEEC
Q ss_conf             886486687329999888998499827998601343112503423207877554236674438999951686-5279833
Q gi|254780480|r   74 SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVRV  152 (367)
Q Consensus        74 ~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~~  152 (367)
                      .+..+++|++..+++|-.++.+|++..+.+.+|||.|   |.++.        ..||+||+|+|++++.|.+ .++.+++
T Consensus        28 ~~~i~i~P~e~~~v~tGl~i~iP~g~~~~l~~RSs~g---l~~~~--------GvID~gY~Gei~v~l~N~~~~~~~i~~   96 (113)
T d2bsya1          28 KTTILLRPMKTTTVDLGLYARPPEGHGLMLWGSTSRP---VTSHV--------GIIDPGYTGELRLILQNQRRYNSTLRP   96 (113)
T ss_dssp             SSCEEECTTSEEEEEEEEEEECCTTEEEEEEEECSSS---EEECC--------EEECTTCCSCEEEEEEESSSSCEEECT
T ss_pred             CCCEEECCCCEEEECCCEEEECCCCCEEEEEHHCCCE---EEECC--------EEECCCCEEEEEEEEEECCCCCEEECC
T ss_conf             9998989998899606729984999766531114740---66012--------166888800499999968996099868


Q ss_pred             CCEEEEEEEEECC
Q ss_conf             9803568985088
Q gi|254780480|r  153 GSRLSQIRFVKER  165 (367)
Q Consensus       153 G~rl~Qi~f~~g~  165 (367)
                      |+|+.|+.++...
T Consensus        97 G~~~~qlv~~~~~  109 (113)
T d2bsya1          97 SELKIHLAAFRYA  109 (113)
T ss_dssp             TSCEEEEEEEEEE
T ss_pred             CCEEEEEEEEECC
T ss_conf             9999999999723


No 9  
>d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Equine infectious anemia virus [TaxId: 11665]}
Probab=99.21  E-value=6.5e-11  Score=88.11  Aligned_cols=90  Identities=16%  Similarity=0.214  Sum_probs=73.9

Q ss_pred             EEEECCCCEEEEEEEEEEECCCCCEEEEE--EECCCCCCEEEECCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
Q ss_conf             39988997899986334442834016445--3043334213421604568866543456675047886178888994798
Q gi|254780480|r  249 QFILDPNEFYIFASREFIQIPPSLVAEMI--PYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQ  326 (367)
Q Consensus       249 ~~~l~p~~F~l~~s~E~v~iP~~~aae~~--~~~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l~~g~  326 (367)
                      .++|+|+++.+..|.+.+.+|+++++...  ++.++-|. .+ .+|.+||||.|.+..      .|-+.++.|+.++.|+
T Consensus        26 d~~i~p~~~~~i~tg~~i~iP~g~~g~i~~RSsla~~gl-~v-~~GvID~gY~Gei~v------~l~N~~~~~~~i~~G~   97 (120)
T d1duna_          26 DIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGL-LI-NGGIIDEGYTGEIQV------ICTNIGKSNIKLIEGQ   97 (120)
T ss_dssp             CEEECTTCEEEEECCCEEECCTTEEEEEECCHHHHHTTE-EE-ECCEEETTCCSCCEE------EEEECSSSCEEECTTC
T ss_pred             CEEECCCCEEEEEECEEEECCCCCEEEEEECCCEEECCC-CC-CCCEEECCCCCCEEE------EEEECCCCCEEECCCC
T ss_conf             889999999999915099858984899961365232288-55-455860366686799------9997899868987999


Q ss_pred             EEEEEEEEECCCCCCCCCCC
Q ss_conf             88999997637664222375
Q gi|254780480|r  327 IIGRLKYESMDGEPERLYGE  346 (367)
Q Consensus       327 ~i~~l~~~~~~~~p~~~Yg~  346 (367)
                      +||||+|.++..+..++|++
T Consensus        98 rIaQlv~~~~~~~~~~~~~e  117 (120)
T d1duna_          98 KFAQLIILQHHSNSRQPWDE  117 (120)
T ss_dssp             EEEEEEEEECCCCCCCCCCT
T ss_pred             EEEEEEEEECCCCCEEEECC
T ss_conf             89999999877885688433


No 10 
>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.20  E-value=4.5e-11  Score=89.13  Aligned_cols=83  Identities=14%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             CCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEE
Q ss_conf             88648668732999988899849982799860134311-2503423207877554236674438999951686-527983
Q gi|254780480|r   74 SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR-IDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVR  151 (367)
Q Consensus        74 ~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GR-Lgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~  151 (367)
                      .+..++.|++..+++|...+.+|++..|++.||||++. .+|.+.  .      ..||+||.|+|.+-+.|.+ -|+.+.
T Consensus        30 ~ed~~i~p~~~~~i~tgi~~~ip~g~~~~i~~RSs~~~k~~l~~~--~------GvID~dYrGei~v~l~N~~~~~~~i~  101 (136)
T d3ehwa1          30 AYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVG--A------GVIDEDYRGNVGVVLFNFGKEKFEVK  101 (136)
T ss_dssp             SSCEEECTTEEEEEECCEEEECCTTEEEEEECCHHHHHHHCEEEE--C------CEECTTBCSCCEEEEEECSSSCEEEC
T ss_pred             CEEEEEECCCEEEEECCCEEEECCCCEEEEEEECCCCCCCEEEEC--C------EEECCCCCCEEEEEEEECCCCCEEEE
T ss_conf             754999736328999784886048958878640355664459807--8------79748887329999996156332772


Q ss_pred             CCCEEEEEEEEEC
Q ss_conf             3980356898508
Q gi|254780480|r  152 VGSRLSQIRFVKE  164 (367)
Q Consensus       152 ~G~rl~Qi~f~~g  164 (367)
                      +|+||+||.|..-
T Consensus       102 ~G~riaQlv~~~~  114 (136)
T d3ehwa1         102 KGDRIAQLICERI  114 (136)
T ss_dssp             TTCEEEEEEEEEB
T ss_pred             CCCEEEEEEECCC
T ss_conf             4973899998167


No 11 
>d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Plasmodium falciparum [TaxId: 5833]}
Probab=99.09  E-value=2.7e-10  Score=84.03  Aligned_cols=120  Identities=13%  Similarity=0.086  Sum_probs=85.7

Q ss_pred             CCCEEEEEECCEEEEEECCCCCCCCCCHHHHCCCCEEEEEECCCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCC
Q ss_conf             71225887589899981231578886211000240478873688648668732999988899849982799860134311
Q gi|254780480|r   32 QPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR  111 (367)
Q Consensus        32 QPaSiDLRLG~~~~rv~asflp~~~~~v~~~l~~~~~~eidl~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GR  111 (367)
                      +-|++||..-+... +    .|+....+.  + ......+....+++..+.......+...+..|.++.+++.||||+++
T Consensus        25 gdAG~DL~~~~d~~-i----~p~~~~~i~--t-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pRSslaK   96 (159)
T d1vyqa1          25 GDSGLDLFIVKDEV-L----KPKSTTFVK--L-GIKAIALQYKSNYYYKCEKSENKKKDDDKSNIVNTSFLLFPRSSISK   96 (159)
T ss_dssp             -CCEEEECCCSCEE-E----CTTEEEEEE--E-EEEEEEEECCCCC------------------CEECCEEEEECGGGGG
T ss_pred             CCEEEEEECCCCEE-E----CCCCEEEEE--C-CCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             90599797587879-8----999889982--7-88889976055604420123344444433467881699973488001


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEECCCEEEEEEEEECC
Q ss_conf             2503423207877554236674438999951686-52798339803568985088
Q gi|254780480|r  112 IDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVRVGSRLSQIRFVKER  165 (367)
Q Consensus       112 Lgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~~G~rl~Qi~f~~g~  165 (367)
                      .++.....+      ..||+||.|+|.+.+.|.+ -|+.+..|+||+||.|..-.
T Consensus        97 ~~l~l~n~~------GIIDsgYrGei~v~l~N~~~~~~~I~~GdRIaQlv~~~~~  145 (159)
T d1vyqa1          97 TPLRLANSI------GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLVSFTGE  145 (159)
T ss_dssp             TTEEETTSS------EEECTTCCSEEEEEEEECSSSCEEECTTCCCEEEECTTCC
T ss_pred             CCEEECCCC------CCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEEEEECC
T ss_conf             572564647------6679766636999999689975697799949999962148


No 12 
>d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId: 562]}
Probab=99.06  E-value=4.4e-10  Score=82.65  Aligned_cols=85  Identities=20%  Similarity=0.370  Sum_probs=71.6

Q ss_pred             CCCEEECCCCEEEEEEEEEEECCC-CCEEEEECCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEE
Q ss_conf             886486687329999888998499-82799860134311-2503423207877554236674438999951686-52798
Q gi|254780480|r   74 SGGTVLDANCVYIVPLMESLNLKN-GISAYANPKSSIGR-IDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVV  150 (367)
Q Consensus        74 ~~g~vLepg~~yLv~t~E~i~LP~-di~a~~~pKSS~GR-Lgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v  150 (367)
                      ++..++.|++..+++|.-.+.+|+ +..|.+.||||+++ .++.....+      ..||+||+|+|.+-+.|.+ -|+.+
T Consensus        38 ~~~i~i~p~~~~~i~tGi~~~~p~~~~~~~i~~RSs~~~K~~l~~~n~~------GvID~dYrGei~v~l~N~~~~~~~i  111 (136)
T d1euwa_          38 NDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLV------GLIDSDYQGQLMISVWNRGQDSFTI  111 (136)
T ss_dssp             SSCEEECTTCEEEEEEEEEEECCCTTEEEEEEECHHHHHHHCEEETTSS------EEECTTCCSEEEEEEEECSSSCEEE
T ss_pred             CCCEECCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCC------CCCCCCCCCCEEEEEEECCCCEEEE
T ss_conf             7706229996398620389984389816799701573234017515644------5334677884599999799972698


Q ss_pred             ECCCEEEEEEEEEC
Q ss_conf             33980356898508
Q gi|254780480|r  151 RVGSRLSQIRFVKE  164 (367)
Q Consensus       151 ~~G~rl~Qi~f~~g  164 (367)
                      .+|+||+|+.|..-
T Consensus       112 ~~GdRIaQlv~~~~  125 (136)
T d1euwa_         112 QPGERIAQMIFVPV  125 (136)
T ss_dssp             CTTCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEC
T ss_conf             69998999998674


No 13 
>d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Mycobacterium tuberculosis, rv2697c [TaxId: 1773]}
Probab=99.00  E-value=6.4e-10  Score=81.61  Aligned_cols=85  Identities=18%  Similarity=0.292  Sum_probs=72.7

Q ss_pred             CCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCC-CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC--CCEEE
Q ss_conf             88648668732999988899849982799860134311-2503423207877554236674438999951686--52798
Q gi|254780480|r   74 SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR-IDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT--FPIVV  150 (367)
Q Consensus        74 ~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GR-Lgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s--fpI~v  150 (367)
                      .+..++.|++..+++|...+.+|++..+.+.||||++. -+|.+...+      ..||+||+|+|.+-+.|.+  -|+.+
T Consensus        41 ~ed~~i~p~~~~~i~tgi~~~~p~g~~~~i~~RSs~~~k~gl~l~n~~------GiID~dYrGel~v~l~N~~~~~~~~i  114 (153)
T d1sixa_          41 AEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSP------GTIDAGYRGEIKVALINLDPAAPIVV  114 (153)
T ss_dssp             SSCEEECTTCEEEEECSEEEECCTTEEEEEECCHHHHHHHCEEETTSS------EEEETTCCSCCEEEEEECCSSCCEEE
T ss_pred             CCCEEECCCCEEEEEECCEEEECCCCEEEECCCCHHHHCCCCEEECCC------CEEECCCCCCEEEEEEECCCCCCEEE
T ss_conf             641483776069999365732046855525065434220574970688------47754668830899996998857698


Q ss_pred             ECCCEEEEEEEEEC
Q ss_conf             33980356898508
Q gi|254780480|r  151 RVGSRLSQIRFVKE  164 (367)
Q Consensus       151 ~~G~rl~Qi~f~~g  164 (367)
                      .+|+||+||.|..-
T Consensus       115 ~~G~RIaQlv~~~~  128 (153)
T d1sixa_         115 HRGDRIAQLLVQRV  128 (153)
T ss_dssp             CTTCEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEC
T ss_conf             58981999997104


No 14 
>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Feline immunodeficiency virus [TaxId: 11673]}
Probab=98.95  E-value=2.9e-09  Score=77.28  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             EEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEECCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCCEE
Q ss_conf             39988997899986334442834016445304333421342160456886654345667504788617888899479888
Q gi|254780480|r  249 QFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQII  328 (367)
Q Consensus       249 ~~~l~p~~F~l~~s~E~v~iP~~~aae~~~~~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l~~g~~i  328 (367)
                      .++|+|++.++..|.+++.+|+++.+...|.++.......-.+|.+||||.|.+..      .|.+.++.|+.++.|++|
T Consensus        25 ~~~I~P~~~~~i~tg~~v~ip~g~~~~i~~RSsl~~~gl~v~~GvID~gYrGei~v------~l~N~~~~~~~i~~G~rI   98 (118)
T d1f7da_          25 EIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEIGV------IMINVSRKSITLMERQKI   98 (118)
T ss_dssp             CEEECTTCEEEEECCCEECCCTTEEEEEECCHHHHTTTEEEECCEECTTCCSCCEE------EEEECSSSCEEECTTCEE
T ss_pred             CEEECCCCEEEEECCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCEE------EEEECCCCCEEECCCCEE
T ss_conf             78999999999987869982899668897322202026841101218333787289------999789988798899989


Q ss_pred             EEEEEEECC
Q ss_conf             999997637
Q gi|254780480|r  329 GRLKYESMD  337 (367)
Q Consensus       329 ~~l~~~~~~  337 (367)
                      |||+|.+..
T Consensus        99 aQlv~~p~~  107 (118)
T d1f7da_          99 AQLIILPCK  107 (118)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEEEC
T ss_conf             999998706


No 15 
>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]}
Probab=98.82  E-value=4.1e-08  Score=69.84  Aligned_cols=84  Identities=13%  Similarity=0.108  Sum_probs=70.1

Q ss_pred             CCEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEECCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
Q ss_conf             75399889978999863344428340164453043334213421604568866543456675047886178888994798
Q gi|254780480|r  247 EGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQ  326 (367)
Q Consensus       247 ~~~~~l~p~~F~l~~s~E~v~iP~~~aae~~~~~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l~~g~  326 (367)
                      +..++|+|+|..+..|-.++.+|+++++...+.++. |  ...-+|.+||||.|.+.      ..|.+.++.|+.++.||
T Consensus        28 ~~~i~i~P~e~~~v~tGl~i~iP~g~~~~l~~RSs~-g--l~~~~GvID~gY~Gei~------v~l~N~~~~~~~i~~G~   98 (113)
T d2bsya1          28 KTTILLRPMKTTTVDLGLYARPPEGHGLMLWGSTSR-P--VTSHVGIIDPGYTGELR------LILQNQRRYNSTLRPSE   98 (113)
T ss_dssp             SSCEEECTTSEEEEEEEEEEECCTTEEEEEEEECSS-S--EEECCEEECTTCCSCEE------EEEEESSSSCEEECTTS
T ss_pred             CCCEEECCCCEEEECCCEEEECCCCCEEEEEHHCCC-E--EEECCEEECCCCEEEEE------EEEEECCCCCEEECCCC
T ss_conf             999898999889960672998499976653111474-0--66012166888800499------99996899609986899


Q ss_pred             EEEEEEEEECCCC
Q ss_conf             8899999763766
Q gi|254780480|r  327 IIGRLKYESMDGE  339 (367)
Q Consensus       327 ~i~~l~~~~~~~~  339 (367)
                      +++||++++..++
T Consensus        99 ~~~qlv~~~~~tP  111 (113)
T d2bsya1          99 LKIHLAAFRYATP  111 (113)
T ss_dssp             CEEEEEEEEEECC
T ss_pred             EEEEEEEEECCCC
T ss_conf             9999999972368


No 16 
>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.62  E-value=1.4e-07  Score=66.23  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             EEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCC-EEEECCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCCE
Q ss_conf             3998899789998633444283401644530433342-134216045688665434566750478861788889947988
Q gi|254780480|r  249 QFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGE-FRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQI  327 (367)
Q Consensus       249 ~~~l~p~~F~l~~s~E~v~iP~~~aae~~~~~~~~g~-~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l~~g~~  327 (367)
                      ..+|.|++..+..|..++.+|+++.+.+.|.++..-- +.....|.+|+||.|.+.      ..|...++.|+.++.|++
T Consensus        32 d~~i~p~~~~~i~tgi~~~ip~g~~~~i~~RSs~~~k~~l~~~~GvID~dYrGei~------v~l~N~~~~~~~i~~G~r  105 (136)
T d3ehwa1          32 DYTIPPMEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNVG------VVLFNFGKEKFEVKKGDR  105 (136)
T ss_dssp             CEEECTTEEEEEECCEEEECCTTEEEEEECCHHHHHHHCEEEECCEECTTBCSCCE------EEEEECSSSCEEECTTCE
T ss_pred             EEEEECCCEEEEECCCEEEECCCCEEEEEEECCCCCCCEEEECCEEECCCCCCEEE------EEEEECCCCCEEEECCCE
T ss_conf             49997363289997848860489588786403556644598078797488873299------999961563327724973


Q ss_pred             EEEEEEEECCCC
Q ss_conf             899999763766
Q gi|254780480|r  328 IGRLKYESMDGE  339 (367)
Q Consensus       328 i~~l~~~~~~~~  339 (367)
                      ||||++.++..+
T Consensus       106 iaQlv~~~~~~~  117 (136)
T d3ehwa1         106 IAQLICERIFYP  117 (136)
T ss_dssp             EEEEEEEEBCCC
T ss_pred             EEEEEECCCCCE
T ss_conf             899998167852


No 17 
>d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Mycobacterium tuberculosis, rv2697c [TaxId: 1773]}
Probab=98.46  E-value=8.3e-07  Score=61.29  Aligned_cols=86  Identities=19%  Similarity=0.267  Sum_probs=67.4

Q ss_pred             EEEECCCCEEEEEEEEEEECCCCCEEEEEEECCC---CCCEEEECCEEECCCCCCCCCCCCCCEEEEEECC-CCCEEEEC
Q ss_conf             3998899789998633444283401644530433---3421342160456886654345667504788617-88889947
Q gi|254780480|r  249 QFILDPNEFYIFASREFIQIPPSLVAEMIPYDHS---IGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRS-SVPFVLEH  324 (367)
Q Consensus       249 ~~~l~p~~F~l~~s~E~v~iP~~~aae~~~~~~~---~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~-~~p~~l~~  324 (367)
                      .++|.|++..+..|-..+.+|+++.+...|.+..   -|......+|.+|+||.|.+.      ..|..-+ +.|+.++.
T Consensus        43 d~~i~p~~~~~i~tgi~~~~p~g~~~~i~~RSs~~~k~gl~l~n~~GiID~dYrGel~------v~l~N~~~~~~~~i~~  116 (153)
T d1sixa_          43 DVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIK------VALINLDPAAPIVVHR  116 (153)
T ss_dssp             CEEECTTCEEEEECSEEEECCTTEEEEEECCHHHHHHHCEEETTSSEEEETTCCSCCE------EEEEECCSSCCEEECT
T ss_pred             CEEECCCCEEEEEECCEEEECCCCEEEECCCCHHHHCCCCEEECCCCEEECCCCCCEE------EEEEECCCCCCEEECC
T ss_conf             1483776069999365732046855525065434220574970688477546688308------9999699885769858


Q ss_pred             CCEEEEEEEEECCCCC
Q ss_conf             9888999997637664
Q gi|254780480|r  325 GQIIGRLKYESMDGEP  340 (367)
Q Consensus       325 g~~i~~l~~~~~~~~p  340 (367)
                      |++||||++.+.....
T Consensus       117 G~RIaQlv~~~~~~~~  132 (153)
T d1sixa_         117 GDRIAQLLVQRVELVE  132 (153)
T ss_dssp             TCEEEEEEEEECCCCC
T ss_pred             CCCEEEEEEEECCCCE
T ss_conf             9819999971047515


No 18 
>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]}
Probab=98.40  E-value=1.2e-06  Score=60.35  Aligned_cols=98  Identities=11%  Similarity=-0.075  Sum_probs=67.4

Q ss_pred             EEEECCCCEEEEEEEEEEECCCCCEEEE--EEECCCCCCEEEECCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
Q ss_conf             3998899789998633444283401644--53043334213421604568866543456675047886178888994798
Q gi|254780480|r  249 QFILDPNEFYIFASREFIQIPPSLVAEM--IPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQ  326 (367)
Q Consensus       249 ~~~l~p~~F~l~~s~E~v~iP~~~aae~--~~~~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l~~g~  326 (367)
                      .++|+|+++.+..|.+++.+|+++++.+  |++.++-|.. ++.+    +|+.|.+.      ..|-+.++.|+.++.|+
T Consensus        21 ~~~I~P~~~~~v~tgi~~~ip~g~~~~i~~RSsla~kGl~-v~~~----~~~~Gei~------v~l~N~s~~~~~I~~G~   89 (136)
T d2bsya2          21 DLALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGIL-VKPC----RWRRGGVD------VSLTNFSDQTVFLNKYR   89 (136)
T ss_dssp             CEEECTTCEEEEEECSCCCCCTTEEEEEECCHHHHHTTEE-ECCE----ECBTTBEE------EEEEECSSSCEEECTTC
T ss_pred             CEEECCCCEEEECCEEEEEECCCEEEEEEECCCCCCCCEE-EECC----CEECCEEE------EEEEECCCCCEEECCCC
T ss_conf             8799999989604568998079808999800210308979-9199----76566799------99998989778986999


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88999997637664222375434723266677
Q gi|254780480|r  327 IIGRLKYESMDGEPERLYGEARGSHYQSQALK  358 (367)
Q Consensus       327 ~i~~l~~~~~~~~p~~~Yg~~~~s~Yq~Qgl~  358 (367)
                      +||||+|.+-...|.. |..-..+.+.+.+.+
T Consensus        90 RIaQlVf~~~~~~~~~-~~~~~~~~~~~~~~~  120 (136)
T d2bsya2          90 RFCQLVYLHKHHLTSF-YSPHSDAGVLGPRSL  120 (136)
T ss_dssp             EEEEEEEEEGGGEESC-CSTTEETTTTCSSSE
T ss_pred             EEEEEEEEECCCCCEE-EECCCCCCCCCCCCC
T ss_conf             8999999844434374-202346346488855


No 19 
>d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId: 562]}
Probab=98.40  E-value=2.4e-06  Score=58.24  Aligned_cols=86  Identities=20%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             CCEEEECCCCEEEEEEEEEEECC-CCCEEEEEEECCCC--CCEEEE-CCEEECCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf             75399889978999863344428-34016445304333--421342-160456886654345667504788617888899
Q gi|254780480|r  247 EGQFILDPNEFYIFASREFIQIP-PSLVAEMIPYDHSI--GEFRVH-YAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVL  322 (367)
Q Consensus       247 ~~~~~l~p~~F~l~~s~E~v~iP-~~~aae~~~~~~~~--g~~r~h-~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l  322 (367)
                      +..+.++|++-.+..|--.+.+| +++.+...+.++..  +-..++ -+|.+|+||.|.+.      ..|...++.|+.+
T Consensus        38 ~~~i~i~p~~~~~i~tGi~~~~p~~~~~~~i~~RSs~~~K~~l~~~n~~GvID~dYrGei~------v~l~N~~~~~~~i  111 (136)
T d1euwa_          38 NDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLM------ISVWNRGQDSFTI  111 (136)
T ss_dssp             SSCEEECTTCEEEEEEEEEEECCCTTEEEEEEECHHHHHHHCEEETTSSEEECTTCCSEEE------EEEEECSSSCEEE
T ss_pred             CCCEECCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEE------EEEEECCCCEEEE
T ss_conf             7706229996398620389984389816799701573234017515644533467788459------9999799972698


Q ss_pred             ECCCEEEEEEEEECCC
Q ss_conf             4798889999976376
Q gi|254780480|r  323 EHGQIIGRLKYESMDG  338 (367)
Q Consensus       323 ~~g~~i~~l~~~~~~~  338 (367)
                      +.|+|||||+|.+...
T Consensus       112 ~~GdRIaQlv~~~~~~  127 (136)
T d1euwa_         112 QPGERIAQMIFVPVVQ  127 (136)
T ss_dssp             CTTCEEEEEEEEECCC
T ss_pred             CCCCEEEEEEEEECCC
T ss_conf             6999899999867471


No 20 
>d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Plasmodium falciparum [TaxId: 5833]}
Probab=97.94  E-value=2.2e-05  Score=52.03  Aligned_cols=77  Identities=12%  Similarity=0.064  Sum_probs=51.0

Q ss_pred             CEEEEEEEEEEECCCCCEEEEEEECCCCCC-EEEE-CCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCCEEEEEEE
Q ss_conf             789998633444283401644530433342-1342-16045688665434566750478861788889947988899999
Q gi|254780480|r  256 EFYIFASREFIQIPPSLVAEMIPYDHSIGE-FRVH-YAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKY  333 (367)
Q Consensus       256 ~F~l~~s~E~v~iP~~~aae~~~~~~~~g~-~r~h-~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l~~g~~i~~l~~  333 (367)
                      .+....+...+..|+++.+-..|.++.... +++. ..|.+|+||.|.+.      +.|-..++.|+.++.|+|||||++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~l~pRSslaK~~l~l~n~~GIIDsgYrGei~------v~l~N~~~~~~~I~~GdRIaQlv~  141 (159)
T d1vyqa1          68 KSENKKKDDDKSNIVNTSFLLFPRSSISKTPLRLANSIGLIDAGYRGEII------AALDNTSDQEYHIKKNDKLVQLVS  141 (159)
T ss_dssp             -------------CEECCEEEEECGGGGGTTEEETTSSEEECTTCCSEEE------EEEEECSSSCEEECTTCCCEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCEEE------EEEEECCCCCEEECCCCEEEEEEE
T ss_conf             23344444433467881699973488001572564647667976663699------999968997569779994999996


Q ss_pred             EECCC
Q ss_conf             76376
Q gi|254780480|r  334 ESMDG  338 (367)
Q Consensus       334 ~~~~~  338 (367)
                      .+...
T Consensus       142 ~~~~~  146 (159)
T d1vyqa1         142 FTGEP  146 (159)
T ss_dssp             TTCCC
T ss_pred             EECCC
T ss_conf             21486


No 21 
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.66  E-value=2.5  Score=18.99  Aligned_cols=31  Identities=16%  Similarity=0.266  Sum_probs=13.1

Q ss_pred             HHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEEC
Q ss_conf             8664311355777539988997899986334442
Q gi|254780480|r  235 DFWDPLFSWDAPEGQFILDPNEFYIFASREFIQI  268 (367)
Q Consensus       235 dfwe~i~~~~~~~~~~~l~p~~F~l~~s~E~v~i  268 (367)
                      +||.++..+  .+|.-+|.+||. ++.++..|.+
T Consensus         2 ~~w~~~~~t--~sg~p~L~~~E~-~l~~qd~V~L   32 (130)
T d2caya1           2 EYWHYVETT--SSGQPLLREGEK-DIFIDQSVGL   32 (130)
T ss_dssp             GTCEECCBC--TTSCBCCCTTCC-EEEEEEEEEE
T ss_pred             CCCCHHHCC--CCCCEECCCCEE-EEEEECCEEE
T ss_conf             632110012--689767159907-9998277787


No 22 
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=48.06  E-value=6.9  Score=16.10  Aligned_cols=35  Identities=9%  Similarity=0.219  Sum_probs=18.3

Q ss_pred             ECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             47988899999763766422237543472326667
Q gi|254780480|r  323 EHGQIIGRLKYESMDGEPERLYGEARGSHYQSQAL  357 (367)
Q Consensus       323 ~~g~~i~~l~~~~~~~~p~~~Yg~~~~s~Yq~Qgl  357 (367)
                      .+|+.||.+.|.+.+...-..+-.....+|+|||+
T Consensus        18 ~~g~~vg~~~~~~~~~~~~~i~~~~V~p~~RG~Gi   52 (102)
T d1r57a_          18 DENNALAEITYRFVDNNEINIDHTGVSDELGGQGV   52 (102)
T ss_dssp             SSTTEEEEEEEEESSSSEEEEEEEEECCSSSTTCT
T ss_pred             ECCCEEEEEEEEECCCCEEEEEEEEECHHHCCCCH
T ss_conf             48960799999982799899999998967779548


No 23 
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.14  E-value=4.8  Score=17.16  Aligned_cols=32  Identities=22%  Similarity=0.265  Sum_probs=27.6

Q ss_pred             CCCCCCCHHHHHHHHHCCCEEECCCCCHHHCC
Q ss_conf             98761586899999987984981789865657
Q gi|254780480|r    1 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQ   32 (367)
Q Consensus         1 ~~~GILsd~~I~~li~~g~I~i~~p~~~~QIQ   32 (367)
                      |++.+||+.+++..-++|.+++..-+++++++
T Consensus         6 ~~~~~Lt~eq~~~f~~~Gyvvi~~~l~~~~~~   37 (296)
T d2a1xa1           6 LDNNVLTLEQRKFYEENGFLVIKNLVPDADIQ   37 (296)
T ss_dssp             CCC--CCSTHHHHHHHHSEEEETTCSCHHHHH
T ss_pred             CCCCCCCHHHHHHHHHCCEEECCCCCCHHHHH
T ss_conf             68899999999999879999815958999999


No 24 
>d1go3e2 d.230.1.1 (E:1-78) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=31.27  E-value=10  Score=15.05  Aligned_cols=69  Identities=17%  Similarity=0.351  Sum_probs=39.9

Q ss_pred             EEEEEEEEEEECCCCCEEEEEEECCCCCCEEEECCEEECCCCCCCCCCCCCCEEEEEECC-CCCEEEE-CCCEEEEEEE
Q ss_conf             899986334442834016445304333421342160456886654345667504788617-8888994-7988899999
Q gi|254780480|r  257 FYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRS-SVPFVLE-HGQIIGRLKY  333 (367)
Q Consensus       257 F~l~~s~E~v~iP~~~aae~~~~~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~-~~p~~l~-~g~~i~~l~~  333 (367)
                      |++..=...|+|||++-++. ......-..+.-|+|-+++..|.-+       +|+++.. ....++. +|...-+..|
T Consensus         2 F~~~~l~d~v~i~P~~~g~~-~~~~i~~~L~~~~egkv~~~~G~ii-------~v~di~~i~eG~I~~gdG~~~~~V~F   72 (78)
T d1go3e2           2 YKILEIADVVKVPPEEFGKD-LKETVKKILMEKYEGRLDKDVGFVL-------SIVDVKDIGEGKVVHGDGSAYHPVVF   72 (78)
T ss_dssp             EEEEEEEEEEEECGGGTTSC-HHHHHHHHHHHHHTTCEETTTEEEE-------EEEEEEEECCCBCCTTCCSEEEEEEE
T ss_pred             CEEEEEEEEEEECHHHHCCC-HHHHHHHHHHHHHCCCCCCCCCEEE-------EEEEEEEECCCEEECCCCCEEEEEEE
T ss_conf             09999999999998993957-8999999998985894948857999-------99880682389898698889999999


Done!