RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine
5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str.
psy62]
         (367 letters)



>gnl|CDD|31061 COG0717, Dcd, Deoxycytidine deaminase [Nucleotide transport and
           metabolism].
          Length = 183

 Score =  108 bits (272), Expect = 2e-24
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 22/168 (13%)

Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNE 256
             DL+ GNE                 ID D+ ++ D     + L      +G+FIL P E
Sbjct: 33  GYDLRLGNEFR------VFRNEGAGVIDPDNPDEEDPLVEEEEL-----EDGEFILPPGE 81

Query: 257 FYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRS 316
           FY+  + E+++IP  + A             + + G  DPGF        G   +  V S
Sbjct: 82  FYLAVTLEYVEIPEDVAAFCTGRSSLARLGLIVHVGVIDPGFE-------GRITLELVNS 134

Query: 317 S-VPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLSKHF 363
             +P  L  G+ I +L +  +D   ER Y   RG  YQ Q   ++   
Sbjct: 135 GPLPIRLYPGERIAQLVFLELDSPAERPYSG-RGGKYQGQ-RGVTPSR 180



 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 5   VLPDKAIATLAERGDIVSE-HPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKI 63
           +L D+ I  + E G ++ E    ++ QIQPA  DLRL ++    R      ID    D+ 
Sbjct: 2   ILSDRDIRKMVEEGRLLIEPFEDKEYQIQPAGYDLRLGNEFRVFRNEGAGVIDPDNPDEE 61

Query: 64  KHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRS 123
                 E    G  +L     Y+   +E + +   ++A+   +SS+ R+ +         
Sbjct: 62  DPLVEEEELEDGEFILPPGEFYLAVTLEYVEIPEDVAAFCTGRSSLARLGLIV------- 114

Query: 124 QEFDSISPNYSGPLYLEILPRT-FPIVVRVGSRLSQIRFVK 163
                I P + G + LE++     PI +  G R++Q+ F++
Sbjct: 115 -HVGVIDPGFEGRITLELVNSGPLPIRLYPGERIAQLVFLE 154


>gnl|CDD|143638 cd07557, trimeric_dUTPase, Trimeric dUTP diphosphatases.  Trimeric
           dUTP diphosphatases, or dUTPases, are the most common
           family of dUTPase, found in bacteria, eukaryotes, and
           archaea. They catalyze the hydrolysis of the dUTP-Mg
           complex (dUTP-Mg) into dUMP and pyrophosphate. This
           reaction is crucial for the preservation of chromosomal
           integrity as it removes dUTP and therefore reduces the
           cellular dUTP/dTTP ratio, and prevents dUTP from being
           incorporated into DNA.  It also provides dUMP as the
           precursor for dTTP synthesis via the thymidylate
           synthase pathway. dUTPases are homotrimeric, except some
           monomeric viral dUTPases, which have been shown to mimic
           a trimer. Active sites are located at the subunit
           interface.
          Length = 92

 Score = 54.0 bits (131), Expect = 6e-08
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 247 EGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIG--EFRVHYAGFFDPGF-GCVLP 303
               +L P E  +  + E I++P   V  + P   S+      VH AG  DPG+ G +  
Sbjct: 11  FEGIVLPPGETVLVPTGEAIELPEGYVGLVFPRS-SLARKGITVHNAGVIDPGYRGEI-- 67

Query: 304 QEVGAKAVLEVRSSVPFVLEHGQIIGRL 331
                   L      P V++ G  I +L
Sbjct: 68  -----TLELYNLGPEPVVIKKGDRIAQL 90



 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 17/99 (17%)

Query: 71  IDLS-----GGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR--IDVFARVIGDRS 123
            DL       G VL      +VP  E++ L  G      P+SS+ R  I V    + D  
Sbjct: 3   YDLRLGEDFEGIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSLARKGITVHNAGVID-- 60

Query: 124 QEFDSISPNYSGPLYLEILPRT-FPIVVRVGSRLSQIRF 161
                  P Y G + LE+      P+V++ G R++Q+ F
Sbjct: 61  -------PGYRGEITLELYNLGPEPVVIKKGDRIAQLVF 92


>gnl|CDD|185736 cd08995, GH32_Aec43_like, Glycosyl hydrolase family 32.  This
           glycosyl hydrolase family 32 (GH32) includes
           characterized as well as uncharacterized proteins. GH32
           enzymes cleave sucrose into fructose and glucose via
           beta-fructofuranosidase activity, producing invert sugar
           that is a mixture of dextrorotatory D-glucose and
           levorotatory D-fructose, thus named invertase (EC
           3.2.1.26). GH32 family also contains other
           fructofuranosidases such as inulinase (EC 3.2.1.7),
           exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and
           transfructosidases such sucrose:sucrose
           1-fructosyltransferase (EC 2.4.1.99), fructan:fructan
           1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan
           6-fructosyltransferase (EC 2.4.1.10), fructan:fructan
           6G-fructosyltransferase (EC 2.4.1.243) and levan
           fructosyltransferases (EC 2.4.1.-). These retaining
           enzymes (i.e. they retain the configuration at anomeric
           carbon atom of the substrate) catalyze hydrolysis in two
           steps involving a covalent glycosyl enzyme intermediate:
           an aspartate located close to the N-terminus acts as the
           catalytic nucleophile and a glutamate acts as the
           general acid/base; a conserved aspartate residue in the
           Arg-Asp-Pro (RDP) motif stabilizes the transition state.
           These enzymes are predicted to display a 5-fold
           beta-propeller fold as found for GH43 and CH68. The
           breakdown of sucrose is widely used as a carbon or
           energy source by bacteria, fungi, and plants. Invertase
           is used commercially in the confectionery industry,
           since fructose has a sweeter taste than sucrose and a
           lower tendency to crystallize.
          Length = 280

 Score = 29.2 bits (66), Expect = 1.7
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 218 RHTAAIDVDSENKYDESDFWDPLFSWDAPEGQF 250
           +    I +     Y+++D+ DP   W+  EG +
Sbjct: 104 KDPEFILIADGEGYEKNDWRDPFVFWNEEEGCY 136


>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
           assembly pathway, ATPase PilB [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 500

 Score = 28.4 bits (63), Expect = 3.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 27  EKNQIQPASIDLRLSSKAYRVRASFLPNIDG 57
           E+   Q   I L+L+ +    R S LP   G
Sbjct: 190 ERRLPQDGRIRLKLNGRKVDFRVSTLPTFYG 220


>gnl|CDD|35731 KOG0511, KOG0511, KOG0511, Ankyrin repeat protein [General function
           prediction only].
          Length = 516

 Score = 28.1 bits (62), Expect = 3.7
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 14  LAERGDIVSEHPLEKNQIQPASIDLRLS--------SKAYRVRASFLPNIDGLVSDKIKH 65
           L E G I S    + ++    +++ R+          KA+  R     +I   + D    
Sbjct: 88  LLENGAICSRDTFDGDRCHYGALNDRIRRMLLSYDILKAFDARQPPAAHIQSSLRDTFLG 147

Query: 66  FKLREIDLSG--GTVLDAN 82
               +ID     G   DA+
Sbjct: 148 CC-HDIDFLQQEGANFDAH 165


>gnl|CDD|144334 pfam00692, dUTPase, dUTPase.  dUTPase hydrolyses dUTP to dUMP and
           pyrophosphate.
          Length = 129

 Score = 28.0 bits (63), Expect = 4.8
 Identities = 7/39 (17%), Positives = 12/39 (30%)

Query: 77  TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVF 115
             L      +VP    + L  G       +SS+    + 
Sbjct: 24  FTLPPGGTVLVPTDIRIPLPPGTFGLILGRSSLAAKGLI 62


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,567,061
Number of extensions: 249218
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 10
Length of query: 367
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,210,882
Effective search space: 1145359904
Effective search space used: 1145359904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)