RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str. psy62] (367 letters) >2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str} Length = 370 Score = 391 bits (1006), Expect = e-109 Identities = 207/363 (57%), Positives = 251/363 (69%), Gaps = 5/363 (1%) Query: 2 NKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSD 61 G+L D AI L + SE L+ +Q+QPAS+DLRL SKAYRVRASF+P V D Sbjct: 9 TTGILADGAIRALFAGDKLKSEADLDVDQVQPASLDLRLGSKAYRVRASFMPGPGTRVID 68 Query: 62 KIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGD 121 K+ F L E+DLS G VL+ CVYIVPLMESL L +SA ANPKSS GR+D+F RV+ D Sbjct: 69 KLNRFSLHEVDLSQGAVLETGCVYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTD 128 Query: 122 RSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELSP 181 +QEFD I Y+GPLYLEI PRTFPIVVR GSRLSQIRF ++ E+ LHE Sbjct: 129 NAQEFDKIPAGYTGPLYLEISPRTFPIVVRRGSRLSQIRFRIGHALLNESEVLKLHETET 188 Query: 182 LVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLF 241 LV + +G G+ALS+DLKG G+ +IGYR K HTA +DVD + ++D DFW+PLF Sbjct: 189 LVASENPNVTGGGIALSIDLKG--FGENGLIGYRGKHHTAVVDVDKKAQHDVLDFWEPLF 246 Query: 242 SWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCV 301 + + ILDP+EFYI SRE + +PP AEM P+D +GEFRVHYAGFFDPGFG Sbjct: 247 AR--GRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHA 304 Query: 302 LPQEVGAKAVLEVRSS-VPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360 G++AVLEVRS VPF+LEHGQI+GRL YE M +PE LYG GS+YQ+Q LKLS Sbjct: 305 QAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYEHMLEKPEGLYGTGLGSNYQAQGLKLS 364 Query: 361 KHF 363 KHF Sbjct: 365 KHF 367 >1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB: 1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A* Length = 204 Score = 108 bits (270), Expect = 3e-24 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 22/174 (12%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L DK I I+ + P K+ + P S D+ L + L +IK Sbjct: 2 ILSDKDIIDYVTSKRIIIK-PFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIK 60 Query: 65 HF---------------KLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSI 109 K+ + E + L N ISA +SS+ Sbjct: 61 IKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSL 120 Query: 110 GRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163 GR+ + + I + G + LEI+ P+++ R+ Q+ F K Sbjct: 121 GRVFLTSHQTAGW------IDAGFKGKITLEIVAFDKPVILYKNQRIGQLIFSK 168 Score = 75.1 bits (184), Expect = 3e-14 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 20/181 (11%) Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAAIDVDSENKY----DESDFWDPLFSWDAPEGQFIL 252 S D+ G+E Y + + +N + + ++ + Sbjct: 31 SYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKINYFKEKYNVDY 90 Query: 253 DPNEFYIFASREFIQIPPSLVAEMIPYDH--SIGEFRVHYAGFFDPGFGCVLPQEVGAKA 310 + + E+I++P + A+ + AG+ D GF K Sbjct: 91 VVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFK--------GKI 142 Query: 311 VLEVR-SSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ----ALKLSKHFHQ 365 LE+ P +L Q IG+L + + + Y E + S Y Q + H+ Sbjct: 143 TLEIVAFDKPVILYKNQRIGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHK 202 Query: 366 T 366 Sbjct: 203 K 203 >2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A* Length = 190 Score = 92.5 bits (229), Expect = 1e-19 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 9/160 (5%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L D+ + G + + P + +QP+SID+RL + +ID + + Sbjct: 2 LLSDRDLRAEISSGRLGID-PFDDTLVQPSSIDVRLDCLFRVFNNTRYTHID-PAKQQDE 59 Query: 65 HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124 L + VL + +E L + ++ KSS+GR+ + Sbjct: 60 LTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHST----- 114 Query: 125 EFDSISPNYSGPLYLEILP-RTFPIVVRVGSRLSQIRFVK 163 I P +SG + LE+ PI + G ++ Q+ ++ Sbjct: 115 -AGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLR 153 Score = 67.9 bits (165), Expect = 3e-12 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 26/177 (14%) Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNE 256 S+D++ ++ + + + P+ F+L P E Sbjct: 31 SIDVRLDCLF-------RVFNNTRYTHIDPAKQQDELTSLVQPV-----DGEPFVLHPGE 78 Query: 257 FYIFASREFIQIPPSLVAEMIPYDHSIGEFRV--HYAGFFDPGFGCVLPQEVGAKAVLEV 314 F + ++ E +P +L + + AGF DPGF + E L Sbjct: 79 FVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLE------LSN 132 Query: 315 RSSVPFVLEHGQIIGRLKYESMDGEPERLYGEAR-GSHYQSQ----ALKLSKHFHQT 366 +++P L G IG+L + E YG +R GS YQ Q + ++F ++ Sbjct: 133 VANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSYQNFIRS 189 >1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A* 1xs4_A* 2j4q_A* 2j4h_A* Length = 193 Score = 91.4 bits (226), Expect = 3e-19 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 14/167 (8%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDG------- 57 L D+ I + G + +I A++D+RL +K R ID Sbjct: 2 RLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEV 61 Query: 58 LVSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117 + +D L + + +ES+ L + + + +SS+ R+ + Sbjct: 62 SAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVH 121 Query: 118 VIGDRSQEFDSISPNYSGPLYLEILP-RTFPIVVRVGSRLSQIRFVK 163 V R P +SG + LE P+ +R G + + F Sbjct: 122 VTAHRID------PGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEP 162 Score = 78.3 bits (192), Expect = 3e-15 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 16/171 (9%) Query: 198 SVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSW--DAPEGQFILDPN 255 +VD++ +G K A ID+ + + F L P Sbjct: 32 TVDVR---LGNK--FRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPG 86 Query: 256 EFYIFASREFIQIPPSLVAEMIPYD--HSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLE 313 E + + E + +P LV + +G A DPG+ Sbjct: 87 ELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWS------GCIVLEFY 140 Query: 314 VRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ-ALKLSKHF 363 +P L G +IG L +E + G R Y + Y++Q S+ Sbjct: 141 NSGKLPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYRNQQGAVASRID 191 >2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii} PDB: 2zdc_A Length = 169 Score = 86.6 bits (214), Expect = 9e-18 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L ++I L + + + ++ DLR+ Y + G + K Sbjct: 12 ILSHQSIKNLLGKVIL----NYSEENVRENGYDLRICGDKYY------ELVQGAELPE-K 60 Query: 65 HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124 LREI+ +L AN Y+ E N+ ++ KS++ R A Sbjct: 61 KATLREIEFKERAILSANHTYLFESCEEFNMPADLAVLITLKSTLARNGFLAP------- 113 Query: 125 EFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163 I Y G + + I + ++ G + F+K Sbjct: 114 -PTVIDAGYKGKVNVAITA-VYNSSLKKGMATHHLIFLK 150 >3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ} Length = 206 Score = 79.0 bits (194), Expect = 1e-15 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 9/138 (6%) Query: 219 HTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIP 278 + I ++ + + + D I+ PN F + + E+ IP ++ + Sbjct: 68 NKFKIFANTHSVVVDPKNFSQDSFVDREGDFCIIPPNSFMLAKTVEYFNIPRDVMVVCVG 127 Query: 279 YDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSS-VPFVLEHGQIIGRLKYESMD 337 V +PG+ G + +S +P + + + + S Sbjct: 128 KSTYARCGIVVNVTPLEPGWS-------GYVTLEFSNTSPLPVKVYAFEGACQFLFFSGK 180 Query: 338 GEPERLYGEARGSHYQSQ 355 + Y E G Y Q Sbjct: 181 ERCSKSYDE-AGGKYMGQ 197 Score = 54.7 bits (131), Expect = 3e-08 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 16/166 (9%) Query: 4 GVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRAS-----FLPNIDGL 58 V+PD I A + ++S P ++ + LSS Y R F + Sbjct: 23 SVMPDHWIKERALKDGMIS--PFVDHKEGTGVLSYGLSSYGYDARLDNKFKIFANTHSVV 80 Query: 59 VSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARV 118 V K ++ N + +E N+ + KS+ R + Sbjct: 81 VDPKNFSQDSFVDREGDFCIIPPNSFMLAKTVEYFNIPRDVMVVCVGKSTYARCGIV--- 137 Query: 119 IGDRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163 + P +SG + LE P+ V Q F Sbjct: 138 -----VNVTPLEPGWSGYVTLEFSNTSPLPVKVYAFEGACQFLFFS 178 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.5 bits (92), Expect = 0.001 Identities = 60/323 (18%), Positives = 91/323 (28%), Gaps = 120/323 (37%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 L ++ L E + A+ D ++ A V FL G VS Sbjct: 32 QLQEQFNKILPEPTE------------GFAA-DDEPTTPAELV-GKFL----GYVSS--- 70 Query: 65 HFKLREIDLSGGTVLDANCVYIVPLM----ESLNLK-NGISAYA--NPKSSIGRIDVFAR 117 G ++ L E+ L+ N I A A + + + Sbjct: 71 ----LVEPSKVGQFDQ-----VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121 Query: 118 VIGDRSQEFDSISPNYSGPLY--LEILPRTFPIVVRVGSRLSQIRFVKERK------FCS 169 +I NY + R F S L R V E F Sbjct: 122 LIK-----------NY----ITARIMAKRPFDKKSN--SAL--FRAVGEGNAQLVAIFGG 162 Query: 170 Q-------EELSALHEL-SPLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTA 221 Q EEL L++ LV D L FS + LS ++ K T Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGD-LIKFSAE--TLSELIRTTL--------DAEKVFTQ 211 Query: 222 AIDVDSENKYDESDFWDPLFSW-DAPEGQFILDPNEFYIFASREFIQIPPSL----VAEM 276 +++ W + P P++ Y+ S IP S V ++ Sbjct: 212 GLNI---------------LEWLENPSNT----PDKDYL-LS-----IPISCPLIGVIQL 246 Query: 277 IPY-------DHSIGEFRVHYAG 292 Y + GE R + G Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKG 269 Score = 35.3 bits (81), Expect = 0.020 Identities = 66/385 (17%), Positives = 120/385 (31%), Gaps = 149/385 (38%) Query: 6 LPDKAIATLAERGDIV---------SEHPLEKNQIQPASIDLR-LSSKAYRVRASFLPNI 55 L + TL + +++ ++ P +K + S R + ++ A F Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDK---KSNSALFRAVGEGNAQLVAIF--GG 162 Query: 56 DGLVSDKIKHFK-LREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDV 114 G D +F+ LR++ Y L+ L I A S + R + Sbjct: 163 QGNTDD---YFEELRDL----------YQTY-HVLVGDL-----IKFSAETLSELIRTTL 203 Query: 115 FARVIGDRSQEFDSIS--------PNYSGPLYLEILPRTFPIVVRVGSRLSQI-RF-VKE 164 A + +Q + + P+ YL +P + P++ G + Q+ + V Sbjct: 204 DAEKV--FTQGLNILEWLENPSNTPDKD---YLLSIPISCPLI---G--VIQLAHYVVT- 252 Query: 165 RKFCSQEELSALHELSPLVQDG-LRD-FSG-----KGVALSVDLKGNEIGKKSIIGYRAK 217 L +P G LR G +G+ + Sbjct: 253 ---AK-----LLG-FTP----GELRSYLKGATGHSQGLVTA------------------- 280 Query: 218 RHTAAIDVDSENKYDESDFWDPLF--SWDAPEGQFILDPNEFYI-FASREF---IQIPPS 271 AI +D W+ F A +L F+I E +PPS Sbjct: 281 ---VAIAE--------TDSWESFFVSVRKAIT---VL----FFIGVRCYEAYPNTSLPPS 322 Query: 272 LVAEMIPYDHSIGEFRVHY----AGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQI 327 ++ + + ++ E + L QE V + S +P Q+ Sbjct: 323 ILEDSL--EN--NEGVPSPMLSISN---------LTQEQVQDYVNKTNSHLP---AGKQV 366 Query: 328 -I----GRLKYESM--DGEPERLYG 345 I G +++ G P+ LYG Sbjct: 367 EISLVNGA---KNLVVSGPPQSLYG 388 Score = 34.9 bits (80), Expect = 0.027 Identities = 55/298 (18%), Positives = 86/298 (28%), Gaps = 135/298 (45%) Query: 11 IATLAERGDIVSEHPLEKNQIQPASIDLR--LS------SKAYRVRA--SFLPNIDGLVS 60 I AE + L+ ++ +++ L K Y + S P I G++ Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-PLI-GVIQ 245 Query: 61 DKIKHF------------KLREIDLSGGT-----VLDANCVYIVPLMESLNLKNGISAYA 103 + H+ +LR L G T ++ A + ES + Sbjct: 246 --LAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLVTAVAIAETDSWESF--------FV 294 Query: 104 NPKSSIGRIDVFARVIGDRSQEF------------DSI-------SP------------- 131 + + +I + +F IG R E DS+ SP Sbjct: 295 SVRKAI-TV-LFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350 Query: 132 -------------------------NY--SGP---LY-LEILPRTFPIVVRVGSRLSQIR 160 N SGP LY L + R + S L Q R Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK----AKAPSGLDQSR 406 Query: 161 --FVKERK------FCSQEEL---SALHELSPLVQDG----LRDFSGKGVALSV-DLK 202 F ERK F L S H S L+ +D V+ + D++ Sbjct: 407 IPF-SERKLKFSNRF-----LPVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQ 456 Score = 28.8 bits (64), Expect = 2.0 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 21/66 (31%) Query: 241 FSWDAPEGQFIL-----DPNEFY--------IFASREFIQIPPSLVAEMIPY------DH 281 P F + + +F FA+ + P LV + + Y Sbjct: 18 HVLLVPTASFFIASQLQE--QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75 Query: 282 SIGEFR 287 +G+F Sbjct: 76 KVGQFD 81 Score = 27.2 bits (60), Expect = 5.8 Identities = 4/9 (44%), Positives = 5/9 (55%) Query: 319 PFVLEHGQI 327 P L HG + Sbjct: 8 PLTLSHGSL 16 >1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A Length = 136 Score = 35.9 bits (83), Expect = 0.014 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%) Query: 77 TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR--IDVFARVIGDRSQEFDSISPNYS 134 L V ++P L L G KSSIG +DV V I Y Sbjct: 26 IHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGV----------IDEGYR 75 Query: 135 GPLYLEILPRT-FPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180 G + + ++ + I + +++Q+ + C E L + Sbjct: 76 GEIGVIMINVSRKSITLMERQKIAQLIILP----CKHEVLEQGKVVM 118 Score = 27.1 bits (60), Expect = 6.4 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 12/106 (11%) Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGF-GCVLPQEVGA 308 L P E + + + +P +I + G D G+ G + Sbjct: 26 IHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEI------- 78 Query: 309 KAVLEVRSSVPFVLEHGQIIGRL---KYESMDGEP-ERLYGEARGS 350 ++ S L Q I +L + E + + RG Sbjct: 79 GVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGD 124 >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Score = 29.7 bits (66), Expect = 1.1 Identities = 6/47 (12%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 51 FLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCVYI--VPLMESLNL 95 + + + L + + +K++ ID + ++ ++ + +E + L Sbjct: 46 WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRL 92 >3nyh_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, bromide, chloride, I MPD, thiocyanate ION; HET: SEP HEM NAG MAN; 1.77A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3erh_A* 3faq_A* 3fnl_A* 2z5z_A* 2o86_A* ... Length = 595 Score = 28.6 bits (63), Expect = 2.5 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%) Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353 + EH ++ LK + E+LY EAR G+ Q Sbjct: 269 LLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQ 305 >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxidase, prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 1pth_A* 1u67_A* 1ht8_A* 1ebv_A* 1ht5_A* 1prh_A* Length = 553 Score = 28.3 bits (63), Expect = 2.9 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353 ++ EH ++ LK E E+L+ AR Sbjct: 274 WLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETI 310 >2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein; HET: NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A* 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A* 3faq_A* 2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ... Length = 583 Score = 28.1 bits (62), Expect = 3.1 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR 348 + EH ++ LK + E+LY EAR Sbjct: 257 LLREHNRLARELKKLNPHWNGEKLYQEAR 285 >3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald biostructures, ALS collaborative crystallography; 1.30A {Entamoeba histolytica} Length = 163 Score = 27.9 bits (62), Expect = 3.7 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 10/101 (9%) Query: 77 TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGP 136 ++ + ++V S+ + + P+SS+ G I +Y G Sbjct: 56 FIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALKYGIDVGAG-------VIDEDYRGE 108 Query: 137 LYLEILPRT-FPIVVRVGSRLSQIRFVKER--KFCSQEELS 174 + + + + R G R++Q+ + + +EL+ Sbjct: 109 IKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELN 149 >1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 3f9p_C* Length = 466 Score = 27.3 bits (60), Expect = 5.1 Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR 348 + EH ++ LK + + ERLY EAR Sbjct: 141 LLREHNRLATELKSLNPRWDGERLYQEAR 169 >2ost_A Putative endonuclease; protein-DNA complex, restriction enzyme fold,PD-(D/E)-XK motif, homing endonuclease, group I intron; 3.10A {Synechocystis SP} Length = 151 Score = 27.2 bits (60), Expect = 5.5 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 11/110 (10%) Query: 9 KAIATLAERGDIVSEHPLEKNQI--------QPASIDLRLSSK---AYRVRASFLPNIDG 57 AI + G V + ++ + ++ S K Sbjct: 14 AAIMRALKMGWGVLKPLGDRLSYDLVFDVEGILLKVQVKSSWKSEKTGNYVVDNRRTRTN 73 Query: 58 LVSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKS 107 + ++ + D + V + Y+ P+ ++ + I K Sbjct: 74 RRNIVRSPYRGNDFDFAVAYVEELELFYVFPVDVFISYGSEIHLVETDKR 123 >2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer, nucleotide metabolism, structural proteomics in europe, spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP: b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A* 2we3_A* Length = 278 Score = 27.3 bits (60), Expect = 6.1 Identities = 9/94 (9%), Positives = 22/94 (23%), Gaps = 16/94 (17%) Query: 77 TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR--IDVFARVIGDRSQEFDSISPNYS 134 L + V L +S + I V Sbjct: 142 LALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILVKPCRW-------------RR 188 Query: 135 GPLYLEILPRT-FPIVVRVGSRLSQIRFVKERKF 167 G + + + + + + R Q+ ++ + Sbjct: 189 GGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHL 222 >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Score = 26.9 bits (59), Expect = 7.2 Identities = 8/55 (14%), Positives = 22/55 (40%) Query: 310 AVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLSKHFH 364 + +S+P G++ R + ++ + E+ + + YQ+ A + Sbjct: 310 KLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGC 364 >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} Length = 114 Score = 26.7 bits (58), Expect = 8.2 Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 11/95 (11%) Query: 245 APEGQFILDPNEFYIFASREFIQI----------PPSLVAEMIPYDHSIGEFRVHYAGFF 294 AP + D Y+ SR + + + R AG Sbjct: 12 APAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEV 71 Query: 295 DPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIG 329 + G L P+ G++ G Sbjct: 72 IRVEEDCFVRADGRTQWLRWEVR-PWYEGEGRVGG 105 >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Score = 26.8 bits (58), Expect = 8.6 Identities = 9/29 (31%), Positives = 15/29 (51%) Query: 90 MESLNLKNGISAYANPKSSIGRIDVFARV 118 M S+++ G ++ K S I V+ RV Sbjct: 3 MASMDISGGNTSRQPQKKSNQNIQVYVRV 31 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,230,413 Number of extensions: 155086 Number of successful extensions: 338 Number of sequences better than 10.0: 1 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 33 Length of query: 367 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 273 Effective length of database: 3,414,294 Effective search space: 932102262 Effective search space used: 932102262 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.3 bits)