RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine
5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str.
psy62]
         (367 letters)



>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural
           genomics, MCSG, PSI-2, protein structure initiative;
           2.20A {Agrobacterium tumefaciens str}
          Length = 370

 Score =  391 bits (1006), Expect = e-109
 Identities = 207/363 (57%), Positives = 251/363 (69%), Gaps = 5/363 (1%)

Query: 2   NKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSD 61
             G+L D AI  L     + SE  L+ +Q+QPAS+DLRL SKAYRVRASF+P     V D
Sbjct: 9   TTGILADGAIRALFAGDKLKSEADLDVDQVQPASLDLRLGSKAYRVRASFMPGPGTRVID 68

Query: 62  KIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGD 121
           K+  F L E+DLS G VL+  CVYIVPLMESL L   +SA ANPKSS GR+D+F RV+ D
Sbjct: 69  KLNRFSLHEVDLSQGAVLETGCVYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTD 128

Query: 122 RSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELSP 181
            +QEFD I   Y+GPLYLEI PRTFPIVVR GSRLSQIRF       ++ E+  LHE   
Sbjct: 129 NAQEFDKIPAGYTGPLYLEISPRTFPIVVRRGSRLSQIRFRIGHALLNESEVLKLHETET 188

Query: 182 LVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLF 241
           LV     + +G G+ALS+DLKG   G+  +IGYR K HTA +DVD + ++D  DFW+PLF
Sbjct: 189 LVASENPNVTGGGIALSIDLKG--FGENGLIGYRGKHHTAVVDVDKKAQHDVLDFWEPLF 246

Query: 242 SWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCV 301
           +      + ILDP+EFYI  SRE + +PP   AEM P+D  +GEFRVHYAGFFDPGFG  
Sbjct: 247 AR--GRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHA 304

Query: 302 LPQEVGAKAVLEVRSS-VPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360
                G++AVLEVRS  VPF+LEHGQI+GRL YE M  +PE LYG   GS+YQ+Q LKLS
Sbjct: 305 QAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYEHMLEKPEGLYGTGLGSNYQAQGLKLS 364

Query: 361 KHF 363
           KHF
Sbjct: 365 KHF 367


>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase,
           DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A
           {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB:
           1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A*
          Length = 204

 Score =  108 bits (270), Expect = 3e-24
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
           +L DK I        I+ + P  K+ + P S D+ L  +              L   +IK
Sbjct: 2   ILSDKDIIDYVTSKRIIIK-PFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIK 60

Query: 65  HF---------------KLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSI 109
                            K+                 +    E + L N ISA    +SS+
Sbjct: 61  IKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSL 120

Query: 110 GRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
           GR+ + +            I   + G + LEI+    P+++    R+ Q+ F K
Sbjct: 121 GRVFLTSHQTAGW------IDAGFKGKITLEIVAFDKPVILYKNQRIGQLIFSK 168



 Score = 75.1 bits (184), Expect = 3e-14
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 20/181 (11%)

Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAAIDVDSENKY----DESDFWDPLFSWDAPEGQFIL 252
           S D+  G+E        Y   +      +  +N         +  +   ++   +     
Sbjct: 31  SYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKINYFKEKYNVDY 90

Query: 253 DPNEFYIFASREFIQIPPSLVAEMIPYDH--SIGEFRVHYAGFFDPGFGCVLPQEVGAKA 310
                 +  + E+I++P  + A+         +       AG+ D GF          K 
Sbjct: 91  VVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFK--------GKI 142

Query: 311 VLEVR-SSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ----ALKLSKHFHQ 365
            LE+     P +L   Q IG+L +  +    +  Y E + S Y  Q       +    H+
Sbjct: 143 TLEIVAFDKPVILYKNQRIGQLIFSKLLSPADVGYSERKTSKYAYQKSVMPSLIHLDNHK 202

Query: 366 T 366
            
Sbjct: 203 K 203


>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted
           beta barrel, hydrolase, nucleotide metabolism; HET: TTP
           1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB:
           2qlp_A*
          Length = 190

 Score = 92.5 bits (229), Expect = 1e-19
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 9/160 (5%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
           +L D+ +      G +  + P +   +QP+SID+RL         +   +ID     + +
Sbjct: 2   LLSDRDLRAEISSGRLGID-PFDDTLVQPSSIDVRLDCLFRVFNNTRYTHID-PAKQQDE 59

Query: 65  HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124
              L +       VL      +   +E   L + ++     KSS+GR+ +          
Sbjct: 60  LTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHST----- 114

Query: 125 EFDSISPNYSGPLYLEILP-RTFPIVVRVGSRLSQIRFVK 163
               I P +SG + LE+      PI +  G ++ Q+  ++
Sbjct: 115 -AGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLR 153



 Score = 67.9 bits (165), Expect = 3e-12
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 26/177 (14%)

Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNE 256
           S+D++                         ++ + + +    P+         F+L P E
Sbjct: 31  SIDVRLDCLF-------RVFNNTRYTHIDPAKQQDELTSLVQPV-----DGEPFVLHPGE 78

Query: 257 FYIFASREFIQIPPSLVAEMIPYDHSIGEFRV--HYAGFFDPGFGCVLPQEVGAKAVLEV 314
           F + ++ E   +P +L   +           +    AGF DPGF   +  E      L  
Sbjct: 79  FVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLE------LSN 132

Query: 315 RSSVPFVLEHGQIIGRLKYESMDGEPERLYGEAR-GSHYQSQ----ALKLSKHFHQT 366
            +++P  L  G  IG+L    +    E  YG +R GS YQ Q      +  ++F ++
Sbjct: 133 VANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSYQNFIRS 189


>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide
           metabolism, trimer, hydrolase; HET: DUT; 1.80A
           {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A*
           1xs4_A* 2j4q_A* 2j4h_A*
          Length = 193

 Score = 91.4 bits (226), Expect = 3e-19
 Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 14/167 (8%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDG------- 57
            L D+ I    + G +         +I  A++D+RL +K    R      ID        
Sbjct: 2   RLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEV 61

Query: 58  LVSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117
             +          +D      L    + +   +ES+ L   +  + + +SS+ R+ +   
Sbjct: 62  SAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVH 121

Query: 118 VIGDRSQEFDSISPNYSGPLYLEILP-RTFPIVVRVGSRLSQIRFVK 163
           V   R        P +SG + LE       P+ +R G  +  + F  
Sbjct: 122 VTAHRID------PGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEP 162



 Score = 78.3 bits (192), Expect = 3e-15
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 16/171 (9%)

Query: 198 SVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSW--DAPEGQFILDPN 255
           +VD++   +G K           A ID+        +     +           F L P 
Sbjct: 32  TVDVR---LGNK--FRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPG 86

Query: 256 EFYIFASREFIQIPPSLVAEMIPYD--HSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLE 313
           E  +  + E + +P  LV  +        +G      A   DPG+               
Sbjct: 87  ELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWS------GCIVLEFY 140

Query: 314 VRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ-ALKLSKHF 363
               +P  L  G +IG L +E + G   R Y     + Y++Q     S+  
Sbjct: 141 NSGKLPLALRPGMLIGALSFEPLSGPAVRPYNRREDAKYRNQQGAVASRID 191


>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical
           protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii}
           PDB: 2zdc_A
          Length = 169

 Score = 86.6 bits (214), Expect = 9e-18
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
           +L  ++I  L  +  +       +  ++    DLR+    Y         + G    + K
Sbjct: 12  ILSHQSIKNLLGKVIL----NYSEENVRENGYDLRICGDKYY------ELVQGAELPE-K 60

Query: 65  HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124
              LREI+     +L AN  Y+    E  N+   ++     KS++ R    A        
Sbjct: 61  KATLREIEFKERAILSANHTYLFESCEEFNMPADLAVLITLKSTLARNGFLAP------- 113

Query: 125 EFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
               I   Y G + + I    +   ++ G     + F+K
Sbjct: 114 -PTVIDAGYKGKVNVAITA-VYNSSLKKGMATHHLIFLK 150


>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH,
           niaid, SBRI, UW, decode, iodide phasing, hydrolase;
           2.10A {Anaplasma phagocytophilum HZ}
          Length = 206

 Score = 79.0 bits (194), Expect = 1e-15
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 9/138 (6%)

Query: 219 HTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIP 278
           +   I  ++ +   +   +      D      I+ PN F +  + E+  IP  ++   + 
Sbjct: 68  NKFKIFANTHSVVVDPKNFSQDSFVDREGDFCIIPPNSFMLAKTVEYFNIPRDVMVVCVG 127

Query: 279 YDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSS-VPFVLEHGQIIGRLKYESMD 337
                    V      +PG+        G   +    +S +P  +   +   +  + S  
Sbjct: 128 KSTYARCGIVVNVTPLEPGWS-------GYVTLEFSNTSPLPVKVYAFEGACQFLFFSGK 180

Query: 338 GEPERLYGEARGSHYQSQ 355
               + Y E  G  Y  Q
Sbjct: 181 ERCSKSYDE-AGGKYMGQ 197



 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 16/166 (9%)

Query: 4   GVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRAS-----FLPNIDGL 58
            V+PD  I   A +  ++S  P   ++     +   LSS  Y  R       F      +
Sbjct: 23  SVMPDHWIKERALKDGMIS--PFVDHKEGTGVLSYGLSSYGYDARLDNKFKIFANTHSVV 80

Query: 59  VSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARV 118
           V  K               ++  N   +   +E  N+   +      KS+  R  +    
Sbjct: 81  VDPKNFSQDSFVDREGDFCIIPPNSFMLAKTVEYFNIPRDVMVVCVGKSTYARCGIV--- 137

Query: 119 IGDRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163
                     + P +SG + LE       P+ V       Q  F  
Sbjct: 138 -----VNVTPLEPGWSGYVTLEFSNTSPLPVKVYAFEGACQFLFFS 178


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 60/323 (18%), Positives = 91/323 (28%), Gaps = 120/323 (37%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
            L ++    L E  +              A+ D   ++ A  V   FL    G VS    
Sbjct: 32  QLQEQFNKILPEPTE------------GFAA-DDEPTTPAELV-GKFL----GYVSS--- 70

Query: 65  HFKLREIDLSGGTVLDANCVYIVPLM----ESLNLK-NGISAYA--NPKSSIGRIDVFAR 117
                      G         ++ L     E+  L+ N I A A    + +   +     
Sbjct: 71  ----LVEPSKVGQFDQ-----VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121

Query: 118 VIGDRSQEFDSISPNYSGPLY--LEILPRTFPIVVRVGSRLSQIRFVKERK------FCS 169
           +I            NY         +  R F       S L   R V E        F  
Sbjct: 122 LIK-----------NY----ITARIMAKRPFDKKSN--SAL--FRAVGEGNAQLVAIFGG 162

Query: 170 Q-------EELSALHEL-SPLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTA 221
           Q       EEL  L++    LV D L  FS +   LS  ++              K  T 
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGD-LIKFSAE--TLSELIRTTL--------DAEKVFTQ 211

Query: 222 AIDVDSENKYDESDFWDPLFSW-DAPEGQFILDPNEFYIFASREFIQIPPSL----VAEM 276
            +++                 W + P       P++ Y+  S     IP S     V ++
Sbjct: 212 GLNI---------------LEWLENPSNT----PDKDYL-LS-----IPISCPLIGVIQL 246

Query: 277 IPY-------DHSIGEFRVHYAG 292
             Y         + GE R +  G
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKG 269



 Score = 35.3 bits (81), Expect = 0.020
 Identities = 66/385 (17%), Positives = 120/385 (31%), Gaps = 149/385 (38%)

Query: 6   LPDKAIATLAERGDIV---------SEHPLEKNQIQPASIDLR-LSSKAYRVRASFLPNI 55
           L  +   TL +  +++         ++ P +K   +  S   R +     ++ A F    
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDK---KSNSALFRAVGEGNAQLVAIF--GG 162

Query: 56  DGLVSDKIKHFK-LREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDV 114
            G   D   +F+ LR++             Y   L+  L     I   A   S + R  +
Sbjct: 163 QGNTDD---YFEELRDL----------YQTY-HVLVGDL-----IKFSAETLSELIRTTL 203

Query: 115 FARVIGDRSQEFDSIS--------PNYSGPLYLEILPRTFPIVVRVGSRLSQI-RF-VKE 164
            A  +   +Q  + +         P+     YL  +P + P++   G  + Q+  + V  
Sbjct: 204 DAEKV--FTQGLNILEWLENPSNTPDKD---YLLSIPISCPLI---G--VIQLAHYVVT- 252

Query: 165 RKFCSQEELSALHELSPLVQDG-LRD-FSG-----KGVALSVDLKGNEIGKKSIIGYRAK 217
                      L   +P    G LR    G     +G+  +                   
Sbjct: 253 ---AK-----LLG-FTP----GELRSYLKGATGHSQGLVTA------------------- 280

Query: 218 RHTAAIDVDSENKYDESDFWDPLF--SWDAPEGQFILDPNEFYI-FASREF---IQIPPS 271
               AI          +D W+  F     A     +L    F+I     E      +PPS
Sbjct: 281 ---VAIAE--------TDSWESFFVSVRKAIT---VL----FFIGVRCYEAYPNTSLPPS 322

Query: 272 LVAEMIPYDHSIGEFRVHY----AGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQI 327
           ++ + +  ++   E         +          L QE     V +  S +P      Q+
Sbjct: 323 ILEDSL--EN--NEGVPSPMLSISN---------LTQEQVQDYVNKTNSHLP---AGKQV 366

Query: 328 -I----GRLKYESM--DGEPERLYG 345
            I    G    +++   G P+ LYG
Sbjct: 367 EISLVNGA---KNLVVSGPPQSLYG 388



 Score = 34.9 bits (80), Expect = 0.027
 Identities = 55/298 (18%), Positives = 86/298 (28%), Gaps = 135/298 (45%)

Query: 11  IATLAERGDIVSEHPLEKNQIQPASIDLR--LS------SKAYRVRA--SFLPNIDGLVS 60
           I   AE    +    L+  ++    +++   L        K Y +    S  P I G++ 
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC-PLI-GVIQ 245

Query: 61  DKIKHF------------KLREIDLSGGT-----VLDANCVYIVPLMESLNLKNGISAYA 103
             + H+            +LR   L G T     ++ A  +      ES         + 
Sbjct: 246 --LAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLVTAVAIAETDSWESF--------FV 294

Query: 104 NPKSSIGRIDVFARVIGDRSQEF------------DSI-------SP------------- 131
           + + +I  + +F   IG R  E             DS+       SP             
Sbjct: 295 SVRKAI-TV-LFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350

Query: 132 -------------------------NY--SGP---LY-LEILPRTFPIVVRVGSRLSQIR 160
                                    N   SGP   LY L +  R      +  S L Q R
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK----AKAPSGLDQSR 406

Query: 161 --FVKERK------FCSQEEL---SALHELSPLVQDG----LRDFSGKGVALSV-DLK 202
             F  ERK      F     L   S  H  S L+        +D     V+ +  D++
Sbjct: 407 IPF-SERKLKFSNRF-----LPVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQ 456



 Score = 28.8 bits (64), Expect = 2.0
 Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 21/66 (31%)

Query: 241 FSWDAPEGQFIL-----DPNEFY--------IFASREFIQIPPSLVAEMIPY------DH 281
                P   F +     +  +F          FA+ +    P  LV + + Y        
Sbjct: 18  HVLLVPTASFFIASQLQE--QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75

Query: 282 SIGEFR 287
            +G+F 
Sbjct: 76  KVGQFD 81



 Score = 27.2 bits (60), Expect = 5.8
 Identities = 4/9 (44%), Positives = 5/9 (55%)

Query: 319 PFVLEHGQI 327
           P  L HG +
Sbjct: 8   PLTLSHGSL 16


>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein,
           hydrolase; 1.40A {Feline immunodeficiency virus} SCOP:
           b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A*
           1f7r_A* 1dut_A
          Length = 136

 Score = 35.9 bits (83), Expect = 0.014
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 77  TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR--IDVFARVIGDRSQEFDSISPNYS 134
             L    V ++P    L L  G       KSSIG   +DV   V          I   Y 
Sbjct: 26  IHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGV----------IDEGYR 75

Query: 135 GPLYLEILPRT-FPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
           G + + ++  +   I +    +++Q+  +     C  E L     + 
Sbjct: 76  GEIGVIMINVSRKSITLMERQKIAQLIILP----CKHEVLEQGKVVM 118



 Score = 27.1 bits (60), Expect = 6.4
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 12/106 (11%)

Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGF-GCVLPQEVGA 308
             L P E  +  +   + +P      +I       +      G  D G+ G +       
Sbjct: 26  IHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRGEI------- 78

Query: 309 KAVLEVRSSVPFVLEHGQIIGRL---KYESMDGEP-ERLYGEARGS 350
             ++   S     L   Q I +L     +    E  + +    RG 
Sbjct: 79  GVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGD 124


>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
          hydrogen ION transport, inner membrane, ION transport,
          membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
          3dze_A 3e2j_A
          Length = 176

 Score = 29.7 bits (66), Expect = 1.1
 Identities = 6/47 (12%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 51 FLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCVYI--VPLMESLNL 95
          +  + + L +  +  +K++ ID +   ++     ++  +  +E + L
Sbjct: 46 WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRL 92


>3nyh_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
           bromide, chloride, I MPD, thiocyanate ION; HET: SEP HEM
           NAG MAN; 1.77A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A*
           2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A*
           3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3erh_A* 3faq_A*
           3fnl_A* 2z5z_A* 2o86_A* ...
          Length = 595

 Score = 28.6 bits (63), Expect = 2.5
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
            + EH ++   LK  +     E+LY EAR   G+  Q
Sbjct: 269 LLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQ 305


>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
           anti-inflammatory drug, peroxidase, prostaglandin
           synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL
           HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB:
           1diy_A* 2ayl_A* 3kk6_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A*
           1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A*
           1pth_A* 1u67_A* 1ht8_A* 1ebv_A* 1ht5_A* 1prh_A*
          Length = 553

 Score = 28.3 bits (63), Expect = 2.9
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
           ++ EH ++   LK E      E+L+  AR        
Sbjct: 274 WLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETI 310


>2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein; HET:
           NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A* 2ips_A*
           2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A*
           3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A* 3faq_A*
           2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ...
          Length = 583

 Score = 28.1 bits (62), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR 348
            + EH ++   LK  +     E+LY EAR
Sbjct: 257 LLREHNRLARELKKLNPHWNGEKLYQEAR 285


>3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald
           biostructures, ALS collaborative crystallography; 1.30A
           {Entamoeba histolytica}
          Length = 163

 Score = 27.9 bits (62), Expect = 3.7
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 77  TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGP 136
            ++  +  ++V    S+ + +       P+SS+          G        I  +Y G 
Sbjct: 56  FIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALKYGIDVGAG-------VIDEDYRGE 108

Query: 137 LYLEILPRT-FPIVVRVGSRLSQIRFVKER--KFCSQEELS 174
           + + +   +      R G R++Q+   +    +    +EL+
Sbjct: 109 IKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELN 149


>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase- bromide
           complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens}
           SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C*
           1dnw_C* 1mhl_C* 1myp_C* 3f9p_C*
          Length = 466

 Score = 27.3 bits (60), Expect = 5.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR 348
            + EH ++   LK  +   + ERLY EAR
Sbjct: 141 LLREHNRLATELKSLNPRWDGERLYQEAR 169


>2ost_A Putative endonuclease; protein-DNA complex, restriction enzyme
           fold,PD-(D/E)-XK motif, homing endonuclease, group I
           intron; 3.10A {Synechocystis SP}
          Length = 151

 Score = 27.2 bits (60), Expect = 5.5
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 11/110 (10%)

Query: 9   KAIATLAERGDIVSEHPLEKNQI--------QPASIDLRLSSK---AYRVRASFLPNIDG 57
            AI    + G  V +   ++               + ++ S K                 
Sbjct: 14  AAIMRALKMGWGVLKPLGDRLSYDLVFDVEGILLKVQVKSSWKSEKTGNYVVDNRRTRTN 73

Query: 58  LVSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKS 107
             +     ++  + D +   V +    Y+ P+   ++  + I      K 
Sbjct: 74  RRNIVRSPYRGNDFDFAVAYVEELELFYVFPVDVFISYGSEIHLVETDKR 123


>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer,
           nucleotide metabolism, structural proteomics in europe,
           spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP:
           b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A*
           2we3_A*
          Length = 278

 Score = 27.3 bits (60), Expect = 6.1
 Identities = 9/94 (9%), Positives = 22/94 (23%), Gaps = 16/94 (17%)

Query: 77  TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR--IDVFARVIGDRSQEFDSISPNYS 134
             L  +    V L                +S +    I V                    
Sbjct: 142 LALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILVKPCRW-------------RR 188

Query: 135 GPLYLEILPRT-FPIVVRVGSRLSQIRFVKERKF 167
           G + + +   +   + +    R  Q+ ++ +   
Sbjct: 189 GGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHL 222


>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
           transport, cytoplasm, endoplasmic reticulum, ER-golgi
           transport, golgi apparatus; 2.35A {Homo sapiens}
          Length = 766

 Score = 26.9 bits (59), Expect = 7.2
 Identities = 8/55 (14%), Positives = 22/55 (40%)

Query: 310 AVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLSKHFH 364
            +    +S+P     G++  R   + ++ + E+   + +   YQ+ A +      
Sbjct: 310 KLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGC 364


>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural
           genomics, midwest center for structural genomics; HET:
           PGE; 2.49A {Geobacter sulfurreducens}
          Length = 114

 Score = 26.7 bits (58), Expect = 8.2
 Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 11/95 (11%)

Query: 245 APEGQFILDPNEFYIFASREFIQI----------PPSLVAEMIPYDHSIGEFRVHYAGFF 294
           AP    + D    Y+  SR + +                      +      R   AG  
Sbjct: 12  APAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEV 71

Query: 295 DPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIG 329
                    +  G    L      P+    G++ G
Sbjct: 72  IRVEEDCFVRADGRTQWLRWEVR-PWYEGEGRVGG 105


>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
           GTP-binding, motor protein, cell division, cell cycle,
           microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
           {Drosophila melanogaster}
          Length = 373

 Score = 26.8 bits (58), Expect = 8.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 90  MESLNLKNGISAYANPKSSIGRIDVFARV 118
           M S+++  G ++    K S   I V+ RV
Sbjct: 3   MASMDISGGNTSRQPQKKSNQNIQVYVRV 31


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,230,413
Number of extensions: 155086
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 33
Length of query: 367
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 273
Effective length of database: 3,414,294
Effective search space: 932102262
Effective search space used: 932102262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)