BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine
5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str.
psy62]
(367 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS 60
MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS
Sbjct: 1 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS 60
Query: 61 DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG 120
DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG
Sbjct: 61 DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG 120
Query: 121 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS
Sbjct: 121 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
Query: 181 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL 240
PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL
Sbjct: 181 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL 240
Query: 241 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC 300
FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC
Sbjct: 241 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC 300
Query: 301 VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360
VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS
Sbjct: 301 VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360
Query: 361 KHFHQTQ 367
KHFHQTQ
Sbjct: 361 KHFHQTQ 367
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 154 SRLSQIRFVKERKFCSQEELSALHELSPL 182
+R+S+IR KE + + EL L +++PL
Sbjct: 273 ARISKIRLSKEAREKALSELQKLRQMNPL 301
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 305 EVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE 346
E G +LE S + ++ RL E M GE LYG+
Sbjct: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160
>gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
Length = 349
Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 89 LMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNY 133
++E + NGI N + G I V +I + D ++P+Y
Sbjct: 171 ILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHY 215
>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 369
Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 274 AEMIPYDHSIGEFRVHYAGFFDPGFG 299
A ++PY HS+ + ++H A + G G
Sbjct: 282 AILVPYPHSVDQDQLHNAYYLQEGGG 307
>gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 136
Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 86 IVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT 145
IV + +L K G+ + S IG +DV ++ G ++ + S YL I+ R
Sbjct: 47 IVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGG-----YLRIMKRG 101
Query: 146 F 146
F
Sbjct: 102 F 102
>gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 252
Score = 23.5 bits (49), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 89 LMESLNLKNGISA 101
L+E+LNLKNG+ A
Sbjct: 125 LIETLNLKNGLQA 137
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 70 EIDLSGGTVLDANCVYIVPL 89
+I LS GT L+ + VY VPL
Sbjct: 112 KIPLSQGTYLNLHAVYHVPL 131
>gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 229
Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 302 LPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKL 359
L +++G KA++ + P + +I+G +K + + ER+ A+ + + AL++
Sbjct: 59 LERDIGDKAIITIAKRQPMASDLREIVGSIK---IAADLERIGDLAKNTAKRVLALQM 113
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,973
Number of Sequences: 1233
Number of extensions: 10729
Number of successful extensions: 26
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 367
length of database: 328,796
effective HSP length: 75
effective length of query: 292
effective length of database: 236,321
effective search space: 69005732
effective search space used: 69005732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)