HHsearch alignment for GI: 254780482 and conserved domain: COG0594

>COG0594 RnpA RNase P protein component [Translation, ribosomal structure and biogenesis].
Probab=99.94  E-value=4.3e-26  Score=164.57  Aligned_cols=108  Identities=41%  Similarity=0.585  Sum_probs=92.8

Q ss_pred             CCCEEECCCHHHHHHHHH-CCCCCCCC-EEEEEEECCCCCCCCEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             986132489899999970-98513685-79999966876677379999607-8775124366899999999997542134
Q gi|254780482|r    1 MSNICILKKRRQFALVKK-GELRKGPF-FSLEVLNNNNSNLLPRVGFTVTK-KQGCAVERNRMRRRLKEAVRLCAEGVLK   77 (123)
Q Consensus         1 m~~~~rLk~~~dF~~v~k-g~~~~~~~-~~i~~~~~~~~~~~~R~G~~vsK-Kvg~AV~RNriKR~lRe~~R~~~~~~~~   77 (123)
T Consensus         1 ~~k~~RLk~~~eF~~V~k~g~~~~~~~~~v~~~--~~~~~~~~RiGlsVsKkk~~~AV~RNRiKR~iRe~~r~-~~~~-~   76 (117)
T COG0594           1 FKKELRLKKRKEFQAVFKKGKRRRNSLFFVLYG--RNNGLDHPRIGLTVSKKKVGNAVERNRIKRLIREAFRL-LQHL-L   76 (117)
T ss_pred             CCHHHHCCCHHHHHHHHHCCCEEECCCEEEEEE--CCCCCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHH-HHHH-C
T ss_conf             954443368899999996586241786699996--68899985699999860024124678999999999996-2531-8


Q ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88339998572003799899999999999998644
Q gi|254780482|r   78 HGHDYVLIAKRDALFIPFKELCNHFVERVRRNKRS  112 (123)
Q Consensus        78 ~~~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~~~  112 (123)
T Consensus        77 ~~~d~Viiar~~~~~~~~~~l~~~L~~~l~~~~~~  111 (117)
T COG0594          77 PGFDIVIIARKGFLELDFSELEKELSQLLKRAKRL  111 (117)
T ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             98609999778867779899999999999861403