Query gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 120 out of 1136
Neff 7.2
Searched_HMMs 13730
Date Wed Jun 1 06:45:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780482.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6fa_ d.14.1.2 (A:) RNase P 100.0 2.5E-29 1.8E-33 179.9 12.7 107 1-110 3-110 (113)
2 d1d6ta_ d.14.1.2 (A:) RNase P 100.0 3E-29 2.2E-33 179.5 9.4 108 1-111 3-111 (117)
3 d1nz0a_ d.14.1.2 (A:) RNase P 99.9 1.3E-27 9.2E-32 170.5 9.2 103 5-110 1-108 (109)
4 d1lvga_ c.37.1.1 (A:) Guanylat 18.7 26 0.0019 13.7 3.6 25 78-108 159-183 (190)
5 d1gzga_ c.1.10.3 (A:) 5-aminol 14.2 35 0.0025 13.0 4.4 25 4-28 9-33 (329)
6 d1h7na_ c.1.10.3 (A:) 5-aminol 13.7 36 0.0026 13.0 3.9 23 65-89 243-265 (340)
7 d1loua_ d.58.14.1 (A:) Ribosom 13.6 36 0.0026 12.9 2.5 29 80-108 4-32 (97)
8 d2c1ha1 c.1.10.3 (A:10-328) 5- 12.6 39 0.0028 12.8 3.8 23 6-28 6-28 (319)
9 d2go8a1 d.58.4.5 (A:3-110) Hyp 11.8 41 0.003 12.6 2.3 34 77-110 8-42 (108)
10 d1pv8a_ c.1.10.3 (A:) 5-aminol 11.5 42 0.0031 12.6 3.6 34 65-103 222-255 (320)
No 1
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=99.96 E-value=2.5e-29 Score=179.94 Aligned_cols=107 Identities=31% Similarity=0.412 Sum_probs=97.8
Q ss_pred CCCEEECCCHHHHHHHHH-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 986132489899999970-9851368579999966876677379999607877512436689999999999754213488
Q gi|254780482|r 1 MSNICILKKRRQFALVKK-GELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHG 79 (123)
Q Consensus 1 m~~~~rLk~~~dF~~v~k-g~~~~~~~~~i~~~~~~~~~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~ 79 (123)
|++.+||+++.||+.|++ |.++.+++++++++++++ .+++|+||+||||+|+||+||++||+|||+||.+.+.+ ++
T Consensus 3 l~k~~RL~~~~dF~~v~k~g~~~~~~~~~l~~~~~~~-~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~r~~~~~~--~~ 79 (113)
T d1a6fa_ 3 LKKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQPE-NDELRVGLSVSKKIGNAVMRNRIKRLIRQAFLEEKERL--KE 79 (113)
T ss_dssp CCGGGBCCSHHHHHHHHHHSEEEECSSEEEEECCCTT-CSSCEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTTB--CS
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEECCCEEEEEECCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_conf 9741427998999999986958748978999972898-98836999992222446888999999999999752338--99
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3399985720037998999999999999986
Q gi|254780482|r 80 HDYVLIAKRDALFIPFKELCNHFVERVRRNK 110 (123)
Q Consensus 80 ~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~ 110 (123)
+||||++++++.+.+|++|+++|..+|+++.
T Consensus 80 ~d~Vvi~~~~~~~~~~~~l~~~l~~ll~k~~ 110 (113)
T d1a6fa_ 80 KDYIIIARKPASQLTYEETKKSLQHLFRKSS 110 (113)
T ss_dssp SEEEEEECGGGTTCCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 8699997077675999999999999999816
No 2
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=99.96 E-value=3e-29 Score=179.48 Aligned_cols=108 Identities=24% Similarity=0.329 Sum_probs=97.9
Q ss_pred CCCEEECCCHHHHHHHHH-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 986132489899999970-9851368579999966876677379999607877512436689999999999754213488
Q gi|254780482|r 1 MSNICILKKRRQFALVKK-GELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHG 79 (123)
Q Consensus 1 m~~~~rLk~~~dF~~v~k-g~~~~~~~~~i~~~~~~~~~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~ 79 (123)
|.+.+||++++||+.|++ |.++.++++++++.++++. +++|+||+||||+|+||+||++||++||+||.+.+.+ +|
T Consensus 3 l~k~~RL~~~~dF~~v~~~G~~~~~~~~~l~~~~~~~~-~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~--~~ 79 (117)
T d1d6ta_ 3 LEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEI-DHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHI--LA 79 (117)
T ss_dssp CCGGGBCCSSHHHHHHHHHCEECCSSSEECEECSTTCC-SSCCEEEECCSSSCSTTHHHHHHHHHHHHHHHGGGTC--CS
T ss_pred CCHHHHCCCHHHHHHHHHCCCEEECCCEEEEEECCCCC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_conf 86466658989999999869888689789999738988-8856999993567645798999999999998632137--99
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 33999857200379989999999999999864
Q gi|254780482|r 80 HDYVLIAKRDALFIPFKELCNHFVERVRRNKR 111 (123)
Q Consensus 80 ~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~~ 111 (123)
+|||+++++++.+.+|++|.++|..+|+++.-
T Consensus 80 ~d~Vvi~~~~~~~~~~~el~~~l~~llkk~~l 111 (117)
T d1d6ta_ 80 KDIIVIARQPAKDMTTLQIQNSLEHVLKIAKV 111 (117)
T ss_dssp SCEEEEECSGGGGCCTTHHHHHHTTHHHHHTC
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 53999971664659999999999999999626
No 3
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.94 E-value=1.3e-27 Score=170.51 Aligned_cols=103 Identities=25% Similarity=0.403 Sum_probs=91.1
Q ss_pred EECCCHHHHHHHHH-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 32489899999970-98513685799999668766773799996078775124366899999999997542134883399
Q gi|254780482|r 5 CILKKRRQFALVKK-GELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHDYV 83 (123)
Q Consensus 5 ~rLk~~~dF~~v~k-g~~~~~~~~~i~~~~~~~~~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~~d~V 83 (123)
.||+++.||+.|++ |.++.++++++++.+++. +.+|+||+||||+|+||.||++||+|||++|.+.+.+ ++|+|||
T Consensus 1 eRLk~~~dF~~v~~~g~~~~~~~~~l~~~~~~~--~~~R~G~~vsKKvg~AV~RNriKR~lRe~~r~~~~~l-~~~~div 77 (109)
T d1nz0a_ 1 ERLRLRRDFLLIFKEGKSLQNEYFVVLFRKNGM--DYSRLGIVVKRKFGKATRRNKLKRWVREIFRRNKGVI-PKGFDIV 77 (109)
T ss_dssp CCCCHHHHHHHHHHHSEEEECSSEEEEEEECSS--SSCEEEECCCGGGCSHHHHHHHHHHHHHHHHHHTTTS-CSSEEEE
T ss_pred CCCCCHHHHHHHHHCCCEEECCCEEEEEECCCC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEE
T ss_conf 989988999999986988768978999983899--9857999991545158888899999999999978607-8987799
Q ss_pred EEECCCC----CCCCHHHHHHHHHHHHHHHH
Q ss_conf 9857200----37998999999999999986
Q gi|254780482|r 84 LIAKRDA----LFIPFKELCNHFVERVRRNK 110 (123)
Q Consensus 84 iiar~~~----~~~~~~~l~~~l~~~l~k~~ 110 (123)
+++++++ ...+|++|.++|..++++++
T Consensus 78 vi~r~~~~~~~~~~~~~~l~~~l~~l~kki~ 108 (109)
T d1nz0a_ 78 VIPRKKLSEEFERVDFWTVREKLLNLLKRIE 108 (109)
T ss_dssp EEECHHHHHHGGGSCHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9972442212210449999999999999715
No 4
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.73 E-value=26 Score=13.69 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=13.2
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8833999857200379989999999999999
Q gi|254780482|r 78 HGHDYVLIAKRDALFIPFKELCNHFVERVRR 108 (123)
Q Consensus 78 ~~~d~Viiar~~~~~~~~~~l~~~l~~~l~k 108 (123)
..||+||+.. ++++..+++..++..
T Consensus 159 ~~fd~iI~N~------dle~a~~~l~~iI~~ 183 (190)
T d1lvga_ 159 GLFDLVIIND------DLDKAYATLKQALSE 183 (190)
T ss_dssp TTCSEEEECS------SHHHHHHHHHHHTHH
T ss_pred CCCCEEEECC------CHHHHHHHHHHHHHH
T ss_conf 8998899892------999999999999999
No 5
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.18 E-value=35 Score=13.03 Aligned_cols=25 Identities=0% Similarity=-0.182 Sum_probs=12.5
Q ss_pred EEECCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 1324898999999709851368579
Q gi|254780482|r 4 ICILKKRRQFALVKKGELRKGPFFS 28 (123)
Q Consensus 4 ~~rLk~~~dF~~v~kg~~~~~~~~~ 28 (123)
.-||+++.-.......-.+....|+
T Consensus 9 ~RRlR~~~~iR~Lv~Et~Ls~~dLI 33 (329)
T d1gzga_ 9 LRRNRRDDFSRRLVRENVLTVDDLI 33 (329)
T ss_dssp THHHHSSHHHHHHHCCCCCCGGGEE
T ss_pred CCCCCCCHHHHHHHHCCCCCHHHCE
T ss_conf 6656898789999840787789926
No 6
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.74 E-value=36 Score=12.96 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 9999997542134883399985720
Q gi|254780482|r 65 KEAVRLCAEGVLKHGHDYVLIAKRD 89 (123)
Q Consensus 65 Re~~R~~~~~~~~~~~d~Viiar~~ 89 (123)
+|++|+...++ ..|.|+|++ ||+
T Consensus 243 ~eAl~e~~~D~-~EGAD~lMV-KPa 265 (340)
T d1h7na_ 243 GLARRALERDM-SEGADGIIV-KPS 265 (340)
T ss_dssp HHHHHHHHHHH-HTTCSEEEE-ESS
T ss_pred HHHHHHHHHHH-HCCCCEEEE-CCH
T ss_conf 79999999987-348876984-304
No 7
>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]}
Probab=13.62 E-value=36 Score=12.94 Aligned_cols=29 Identities=0% Similarity=-0.155 Sum_probs=14.1
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 33999857200379989999999999999
Q gi|254780482|r 80 HDYVLIAKRDALFIPFKELCNHFVERVRR 108 (123)
Q Consensus 80 ~d~Viiar~~~~~~~~~~l~~~l~~~l~k 108 (123)
|..++|.+|+..+....++.+.+..++.+
T Consensus 4 YE~~~i~~p~l~~~~~~~~~~~~~~~i~~ 32 (97)
T d1loua_ 4 YEVNIVLNPNLDQSQLALEKEIIQRAAEN 32 (97)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 13999989999989999999999999986
No 8
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]}
Probab=12.64 E-value=39 Score=12.78 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=8.6
Q ss_pred ECCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 24898999999709851368579
Q gi|254780482|r 6 ILKKRRQFALVKKGELRKGPFFS 28 (123)
Q Consensus 6 rLk~~~dF~~v~kg~~~~~~~~~ 28 (123)
||+++.-.......-.+....|+
T Consensus 6 RlR~~~~iR~Lv~Et~Ls~~dLI 28 (319)
T d2c1ha1 6 RLRRTAALRNLVQENTLTVNDLV 28 (319)
T ss_dssp GGSSCHHHHHHHCCCCCCGGGEE
T ss_pred CCCCCHHHHHHHHHCCCCHHHCE
T ss_conf 47898799999861798889916
No 9
>d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus subtilis [TaxId: 1423]}
Probab=11.78 E-value=41 Score=12.62 Aligned_cols=34 Identities=6% Similarity=-0.016 Sum_probs=18.7
Q ss_pred CCCCEE-EEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 488339-9985720037998999999999999986
Q gi|254780482|r 77 KHGHDY-VLIAKRDALFIPFKELCNHFVERVRRNK 110 (123)
Q Consensus 77 ~~~~d~-Viiar~~~~~~~~~~l~~~l~~~l~k~~ 110 (123)
.|+|.. ||..........|.++.+.|..++....
T Consensus 8 ~ppyyaViF~~~~~~~~~~Y~~~a~~m~~la~~~p 42 (108)
T d2go8a1 8 EPPYYAVIFSSVKSENDTGYGETAERMVSLAADQP 42 (108)
T ss_dssp SSCEEEEEEEEECC------CHHHHHHHHHHHHST
T ss_pred CCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99989999999837886169999999999997688
No 10
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.52 E-value=42 Score=12.57 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 999999754213488339998572003799899999999
Q gi|254780482|r 65 KEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFV 103 (123)
Q Consensus 65 Re~~R~~~~~~~~~~~d~Viiar~~~~~~~~~~l~~~l~ 103 (123)
+|++|+...++ ..|.|++++ ||+.. |-++-.++.
T Consensus 222 ~eA~~e~~~D~-~EGAD~lMV-KPa~~---yLDiI~~~k 255 (320)
T d1pv8a_ 222 GLALRAVDRDV-REGADMLMV-KPGMP---YLDIVREVK 255 (320)
T ss_dssp HHHHHHHHHHH-HTTCSBEEE-ESCGG---GHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCCEEEE-EHHHH---HHHHHHHHH
T ss_conf 78999999987-548765762-04688---999999988
Done!