BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus
Liberibacter asiaticus str. psy62]
(123 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
Length = 123
Score = 248 bits (634), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MSNICILKKRRQFALVKKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRM 60
MSNICILKKRRQFALVKKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRM
Sbjct: 1 MSNICILKKRRQFALVKKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRM 60
Query: 61 RRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNKRSYYSGKNFS 120
RRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNKRSYYSGKNFS
Sbjct: 61 RRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNKRSYYSGKNFS 120
Query: 121 RKS 123
RKS
Sbjct: 121 RKS 123
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 24.6 bits (52), Expect = 0.53, Method: Composition-based stats.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 83 VLIAKRDALFIPFKEL 98
V++ R ALF+PFK+L
Sbjct: 300 VIVGVRSALFLPFKKL 315
>gi|254780811|ref|YP_003065224.1| hypothetical protein CLIBASIA_03510 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 178
Score = 21.9 bits (45), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 89 DALFIPFKELCNHFVERVRRNKRSYYSGKNF 119
LF+ F + FV R R+K+ ++S K F
Sbjct: 125 SVLFLSFYHVYLSFVMRKFRDKKLFHSPKYF 155
>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 864
Score = 21.6 bits (44), Expect = 5.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 39 LLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHD 81
+L RVG Q + R L V L AEGV+ HG +
Sbjct: 415 MLSRVGIDKEAIQRINKMPLKERMELLSDVGLYAEGVVAHGRN 457
>gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 129
Score = 21.6 bits (44), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 10 RRQFALVKKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERN 58
+R++ L + ++R+ S L + +S + P +TK + A+ER
Sbjct: 64 KRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALERE 112
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 598
Score = 21.2 bits (43), Expect = 5.7, Method: Composition-based stats.
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 26 FFSLEVLNNNNSNL 39
FFS+ +L+N+N N+
Sbjct: 14 FFSMGILHNHNMNM 27
>gi|254780498|ref|YP_003064911.1| putative glycerol-3-phosphate acyltransferase PlsX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 364
Score = 21.2 bits (43), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 36 NSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHGH 80
N LL R+G + KK V+ R V L +G++ GH
Sbjct: 268 NRTLLSRIGCLLIKKSLREVKEGFDPRNFNGGVLLGVDGLVVKGH 312
>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 282
Score = 20.8 bits (42), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 100 NHFVERVRRNKRSYYSGKNFSRKS 123
+H+ ++RRN R Y ++F++KS
Sbjct: 18 SHYA-KLRRNHRDYKKMQSFNQKS 40
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,251
Number of Sequences: 1233
Number of extensions: 2844
Number of successful extensions: 13
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 123
length of database: 328,796
effective HSP length: 64
effective length of query: 59
effective length of database: 249,884
effective search space: 14743156
effective search space used: 14743156
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 33 (17.3 bits)