HHsearch alignment for GI: 254780483 and conserved domain: PRK01622
>PRK01622 OxaA-like protein precursor; Validated.
Probab=100.00 E-value=0 Score=482.88 Aligned_cols=212 Identities=35% Similarity=0.657 Sum_probs=188.1
Q ss_pred HHCCHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC--C
Q ss_conf 201103-56899999999887632-016399999999999988899999999999----888778889999973145--1
Q gi|254780483|r 335 DWGWFY-FIAKPMFMLMSYFYNLV-GNFGIAIMLTTVFVKLLFFPLAKKQYVSTA----NMKNIQPKIDELREKFKQ--S 406 (581)
Q Consensus 335 d~Gwf~-~i~kplf~~L~~l~~~i-~NyGiaIIllTilikli~~PLt~ks~~Sm~----kM~~lqP~i~~i~ekyk~--d 406 (581)
T Consensus 33 ~~g~~~~~~v~p~~~~i~~~a~~~~gnyGlaIIl~TiivRlil~PL~~kq~ks~~~mq~KM~~lqPel~~Iq~Kyk~~kd 112 (266)
T PRK01622 33 SDGFFHHYFVYPFSFLIQFVAHHIHGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKDTKD 112 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
T ss_conf 99707999999999999999987588499999999999999998702999999999999999828426899998468988
Q ss_pred H--HHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 1--567899999998504878678-8999999999999999999876986288753410000335725666764102222
Q gi|254780483|r 407 P--PQVLQKAMIQLYKTHNINPLA-GCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFY 483 (581)
Q Consensus 407 ~--~~~~~~e~m~ly~~~~vnP~~-GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~ 483 (581)
T Consensus 113 ~~~q~~~qqEmm~LYke~gvNPla~GCLP~LIQmPIf~aLy~~i~~~~~l~~~~F-lw~-~L~~~d--~----------- 177 (266)
T PRK01622 113 LEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTEEIATHSF-LWF-NLGHAD--H----------- 177 (266)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEE-ECCCCC--H-----------
T ss_conf 8999999999999999849996134578999999999999999985598717981-123-258630--9-----------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 027899999999999999999752887-7468999---9999-9689999999878799999999999999999999987
Q gi|254780483|r 484 LPGFMHVGIWPIIMSLSMFIQMKMSPP-PADKGQA---MILN-WMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMK 558 (581)
Q Consensus 484 ~~~~~~~~ilp~l~~~~m~~~~k~~p~-~~d~~q~---~~~~-~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~ 558 (581)
T Consensus 178 --------ilpila~~~~~~q~~l~~~~~~~~~q~~~~k~M~~~mPim~~~~~~~~PagL~LYW~vsnlf~i~Qq~ii~k 249 (266)
T PRK01622 178 --------ILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGFMMPAMILFMSFAAPSALVLYWITGGLFLMVQTIVLRK 249 (266)
T ss_pred --------HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------999999999999999758899996899999999999999999999844899999999979999999999998
Q ss_pred HCCCCCCHHHH
Q ss_conf 47998347989
Q gi|254780483|r 559 MHGAEIGLIDR 569 (581)
Q Consensus 559 ~~~~~~~~~~~ 569 (581)
T Consensus 250 ~~~k~~~~~~~ 260 (266)
T PRK01622 250 VMEKEEKQLQK 260 (266)
T ss_pred HHHHHHHHHHH
T ss_conf 86588999999