HHsearch alignment for GI: 254780483 and conserved domain: pfam00558

>pfam00558 Vpu Vpu protein. The Vpu protein contains an N-terminal transmembrane spanning region and a C-terminal cytoplasmic region. The HIV-1 Vpu protein stimulates virus production by enhancing the release of viral particles from infected cells. The VPU protein binds specifically to CD4.

Probab=92.30  E-value=0.83  Score=24.30  Aligned_cols=68  Identities=16%  Similarity=0.447  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHH-HHHHHHHHHHHHCCC-CHH
Q ss_conf             63999999999999888999999999998887788899999731451--156-789999999850487-867
Q gi|254780483|r  360 FGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQS--PPQ-VLQKAMIQLYKTHNI-NPL  427 (581)
Q Consensus       360 yGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d--~~~-~~~~e~m~ly~~~~v-nP~  427 (581)
T Consensus         7 ~~ii~l~v~liiaIvVW~iv~~ey~k~~rqrkI~~l~~RIrEraEDSgnES~Gd~Ee~L~~Lv~~~gfdnPm   78 (81)
T pfam00558         7 IGLIALIVALIINIVVWTIVYREYRKIKKQREILRLIKRIRERAEDSGNESNGDEEEELADLVHSHGFDNPM   78 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999999999999999999999999999999999603678878870889999998807998755